ID:

dsi_156

 Coordinate:

3l:3015955-3015997 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-29.0 -28.5

Flybase annnotation

Antisense to exon [3l_3015357_3016599_+]; Antisense to three_prime_UTR [3l_3015744_3016599_+]

No Repeatable elements found

Sense Strand Reads

GCACGACTCAAAAAACAATTCTCCGGCGCCACATGGCGCCCTCTCCGGCAGTCCATGTGCCCGGGCTCCGGTCCGGATGCACAGTGGGACTGGGACAACAAATGAAATTTGGGTGCAGTTCGTGAGCGCGCTTTCTTCGCGCT
***********************************........(((..((((((.(((((((((((....))))))..)))))...))))))))).............*********************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
.......................................................................TCCGGATGCACAGTGGGACTG................................................... 21 0 1 6.00 6 3 3 0 0 0 0 0 0
..........................................................GACCGGGGTCCGGTGCGGA.................................................................. 19 3 9 2.00 18 0 0 0 12 0 0 6 0
........................................................................................................AAATTTGGGTGCAGTTCGTGA.................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0
.............................................................................................................TGGGTGCAGTTCGTGAGCGCG............. 21 0 1 1.00 1 0 0 1 0 0 0 0 0
..........................................................................................TGGGACAACAAATGAAATTTG................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0
.............................................CGGCAGTCCATGTGCCCGGGC............................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................................TGAAATTTGGGTGCAGTTCGTGAGCGCGC............ 29 0 1 1.00 1 0 0 1 0 0 0 0 0
.......................................................................TCCGGATGCACAGTGGGACTGT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................CGGATGCACAGTGGGACTG................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................GTCCGGATGCACAGTGGGACT.................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.............................................................................TGCACAGTGGGACTGGGACA.............................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0
................................................................................ACATTGGGACTGGGACAC............................................. 18 2 6 0.50 3 2 1 0 0 0 0 0 0
............................................................CCGGGGTCCGGTGCGGA.................................................................. 17 2 10 0.50 5 0 0 0 2 2 0 1 0
...............................................................................CACATTGGGACTGAGACAA............................................. 19 2 4 0.50 2 1 1 0 0 0 0 0 0
........................................CTGTCCGTCAGTCCATGTGC................................................................................... 20 2 3 0.33 1 0 0 0 0 1 0 0 0
...............................................................................CACATTGGGACTGGGACAC............................................. 19 2 3 0.33 1 1 0 0 0 0 0 0 0
..............................................................................GCACATTGGGACTGAGACA.............................................. 19 2 3 0.33 1 0 0 0 0 1 0 0 0
.........................................................GGACCGGGGTCCGGTCCGGA.................................................................. 20 3 5 0.20 1 0 0 0 1 0 0 0 0
.............................................CGTCCGTCCATGTGCCCGCG.............................................................................. 20 3 6 0.17 1 0 0 0 0 1 0 0 0
..........................................................GACCGGGGTCCGGTGCGG................................................................... 18 3 20 0.10 2 0 0 0 2 0 0 0 0
.....................................................................................................GTGGAATTTGGGTGCAGT........................ 18 2 12 0.08 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

###############################################################################################################################################
CGTGCTGAGTTTTTTGTTAAGAGGCCGCGGTGTACCGCGGGAGAGGCCGTCAGGTACACGGGCCCGAGGCCAGGCCTACGTGTCACCCTGACCCTGTTGTTTACTTTAAACCCACGTCAAGCACTCGCGCGAAAGAAGCGCGA
***********************************........(((..((((((.(((((((((((....))))))..)))))...))))))))).............*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 M024
male body		 SRR902009
testis
 M023
head
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR553488
RT_0-2 hours eggs
.........................CGCGGTGTACCGCGGGAGAGGCCGT............................................................................................. 25 0 1 14.00 14 14 0 0 0 0 0 0 0 0 0 0
...............................................................CCGAGGCCAGGCCTACGTGTCACCCT...................................................... 26 0 1 5.00 5 1 3 1 0 0 0 0 0 0 0 0
.................................ACCGCGGGAGAGGCCGTCAGGTACACGGGC................................................................................ 30 0 1 3.00 3 0 0 2 1 0 0 0 0 0 0 0
.................................................................................GTCACCCTGACCCTGTTGTTT......................................... 21 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0
..................................................CAGGTACACGGGCCCGAGGCCAGGCCT.................................................................. 27 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................TTACTTTAAACCCACGTCAAGCACT.................. 25 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
...........................................AGGCAGGCAGGTACACGGGCGC.............................................................................. 22 3 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
.......................AACGCGGTGTACCGCGGGAG.................................................................................................... 20 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
....................................GCGGGAGAGGCCGTCAGGTACACGGGC................................................................................ 27 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0
........................ACGCGGTGTACCGCGGGAGAGGCCGT............................................................................................. 26 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.............................................................................ACGTGTCACCCTGACCCTGTT............................................. 21 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0
...........................................AGGCCGTCAGGTACACGGGCCCGAGG.......................................................................... 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
........................ACGCGGTGTACCGCGGGAGAGGCCGTC............................................................................................ 27 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.............................................GCAGGCAGGTACACGGGCGC.............................................................................. 20 3 6 1.50 9 0 9 0 0 0 0 0 0 0 0 0
............................................GGCAGGCAGGTACACGGGCGC.............................................................................. 21 3 3 1.33 4 0 4 0 0 0 0 0 0 0 0 0
...................................................................GGCCAGGCCTACGTGTCACC........................................................ 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................GTCACCCTGACCCTGTTGTTTACTT..................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
...........................................................................CTACGTGTCACCCTGACCCTGTTGTTT......................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................GTACCGCGGGAGAGGCCGTCAGGT........................................................................................ 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...........................CGGTGTACCGCGGGAGAGGCCGTCAGGT........................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................CTGTTGTTTACTTTAAACCCACGT.......................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
..........................................GAGGCCGTCAGGTACACGGGCCCGAGGCC........................................................................ 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........TTTTTGTTAAGAGGCCGCGGT................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...................................CGCGGGAGAGGCCGTCAGGTACA..................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.......................................GGAGAGGCCGTCAGGTACACG................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..................................CCGCGGGAGAGGCCGTCAGGT........................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................GGGTACCGCGGGAGAGGCCGTCAGGT........................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................AGGCCGTCAGGTACACGGGCCCGAGGC......................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............GTTGAGAGGCCGCGGTGTAC............................................................................................................ 20 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.....................AGGCCGCGGTGTACCGCGGGAGAGGCCGT............................................................................................. 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................GTCAAGCATTCACGCGAAAGA....... 21 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
........................................................CACGGGCCCGAGGCCAGGCCTACGT.............................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
...................................................................GGCCAGGCCTACGTGTCACCCTGACCC................................................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................AGGCCTACGTGTCACCCTGACCC................................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.........................AGCGGTGTACCGCGGGAGAGGCCGT............................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................GTCAGGTACACGGGCCCGAGGC......................................................................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...................................CGCGGGAGAGGCCGTCAGGTACACGGGC................................................................................ 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................CGGGAGAGGCCGTCAGGT........................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................CGAGGCCAGGCCTACGTGTCACCCT...................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......................AACGCGGTGTACCGCGGGAGAGGCCGT............................................................................................. 27 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................CCAGGCCTACGTGTCACCC....................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................GCGGGAGAGGCCGTCAGGT........................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................GCCCGAGGCCAGGCCTACGTGTCACCCT...................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................GCGGTGTACCGCGGGAGAGGCCGT............................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.GTGCTGAGTTTTTTGTTAAGA......................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................AGGCCTACGTGTCACCCTGACCCTGT.............................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................CCACGTCAAGCACTCGCG.............. 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.........................CGCGGTGTACCGCGGGAGAGGCCG.............................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................CGAGGCCAGGCCTACGTGTCACCCTG..................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............TGTTAAGAGGCCGCGGTGTAC............................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...............................................................CCGAGGCCAGGCCTACG............................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................CCGAGGCCAGGCCTACGTGTCACCCTGACC.................................................. 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................ACCCACGTCAAGCACTCGCGC............. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................CCAGGCCTACGTGTCACCCTGACCCTGTT............................................. 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................ACGTCAAGCACTCGCGCGAAAGAAG..... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.............................GTGTACCGCGGGAGAGGCCGTCAGGT........................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......CGTTTTTTGTTAATAGGC...................................................................................................................... 18 2 14 0.57 8 0 0 0 0 1 0 6 0 0 1 0
...........................................AGGCAGGCAGGTACACGGGC................................................................................ 20 2 6 0.50 3 0 3 0 0 0 0 0 0 0 0 0
..................AAGAGGCAGGGGTGTAGCG.......................................................................................................... 19 3 20 0.20 4 0 0 0 0 0 1 0 0 3 0 0
....CAGCGTTTTTTGTTAATAGGC...................................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0
...................AGAGGCCGCGGGGTA............................................................................................................. 15 1 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0
..................................CCGAGGGAGAGGCCGT............................................................................................. 16 1 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CGTCAAGCAGTCCCGCGGAA......... 20 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 1
...........................................AGGCAGGCAGGTACACGGGCG............................................................................... 21 3 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0
........................................................CACGGGGCCGAGGCC........................................................................ 15 1 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0
.............................GTGTACCGCGCGAGAGT................................................................................................. 17 2 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0
.................TAAGAGGCAGGGGTGTAGC........................................................................................................... 19 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 1
...........................................AGGCAGGCAGGTACACGGTC................................................................................ 20 3 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0
............................................................GGCCCGAGGCCAAGGCTAT................................................................ 19 3 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:3015905-3016047 - dsi_156 -GCACGA-------------------CTCAAAAAACAATTCTCC--------------------------------------------------GGCGCCAC--ATG--GCGCCC-------TCTC-CGGCAGTC----CATGTGCCCG--G-GCTCC-------------------G-GT---------------------------------------------------------CCGG---------------A---TGCACAGTGGGACT--G---GGACAACAAATGAA-A--TTT-GGG---TGCAGTTCGT-----G-AGCG-----------------------------CGCTTT------C-TT--------CGCGCT
droSec2 scaffold_2:3151366-3151509 - -GCACGA-------------------CTCAAAAAACAATTCTCC--------------------------------------------------GGCGCCAC--ATG--GCGCCC-------TCTC-CAGCAGTG----CATGTGCCCG--G-GCTCC-------------------G-GT---------------------------------------------------------CCGG---------------A---TGCACAGTGGGACT--G---GGACAACAAATGAAAA--TTT-GGG---TGCAGTTCGT-----G-AGTG-----------------------------CGCTTT------C-TT--------CGCGCT
dm3 chr3L:3157748-3157891 - -GCACGG-------------------CTCAAAAAACAATTCTCT--------------------------------------------------GGCGCCAC--CTG--GCGCCC-------TCTC-TCGCAGTC----CATGTGCCCG--G-ACTCC-------------------G-GG---------------------------------------------------------CCGG---------------A---TGCACAGTGGGACT--G---GGACAACAAATGAAAA--TTT-GGG---TGCAGTTCGT-----G-AGCG-----------------------------CGCGTT------T-TT--------CGCGCT
droEre2 scaffold_4784:3166784-3166931 - -GCACGG-------------------CTCAAAAAACAAATCTCC--------------------------------------------------GGCGCCAC--ATG--GCGCCC-------TCTC-CGGCAGTCCGTCCGTGTGCCCG--G-GCTCC-------------------G-GG---------------------------------------------------------CCGG---------------A---TGCACAGTGGGACT--G---GGACAACAAATGAAAA--CTT-TGG---TGCAGGTCGT-----G-AGCG-----------------------------CGTGTT------T-TT--------CGCGCT
droYak3 3L:8784050-8784197 + -GCACGG-------------------CTCAAAAAACAAATCTCC--------------------------------------------------GGCGCCAC--ATG--GCGCCC-------TCTC-CGGCAGTCCGTCCATGTGCCCG--G-ACTCC-------------------G-GG---------------------------------------------------------CCGG---------------A---TGCACAGTGGGACT--G---GGACAACAAATGAAAA--TTT-TGG---TGCAGGTCGT-----G-AGCG-----------------------------CGCGTT------T-TT--------CGCGCT
droEug1 scf7180000409466:881424-881567 - -GCATGG-------------------CTCTAAAAACAAATCTTC--------------------------------------------------CGCGCCAC--TTA--GCGCCC-------TTTC-TGGCAGTC----CATGTGCC-G--G-GCTCT-------------------G-GG---------------------------------------------------------CCGG---------------A---TGCACATTGGAACT--G---GGACAACAAATGAAAA--TTT-CGA---TGCAGGTTGT-----AAAATA-----------------------------CGCGAT------T-TA--------CACGCA
droBia1 scf7180000302428:2505496-2505644 - -GCACGG-------------------CTCAAAAAACAAATCTCC--------------------------------------------------GGGGCCTA--GTG--GCGCCC-A-----TCTC-CGGCAGTC----CATGTGCCCG--G-TCACC-------------------G-GG---------------------------------------------------------CCGG---------------A---TGCACAATGGGACT--G---GGACAACAAATGAAAA--TTT-CGA---TGCAGGCTAT-----GAAGTG-----------------------------CGCGAT-T---AAAAG--------CGCACA
droTak1 scf7180000415378:244673-244815 + -GCACGG-------------------CTCAAAAAACAAATCTCC--------------------------------------------------GGCGCCAC--TTGGGGCGCCC-A-----TCTCCGCGCAGTC----CAAGTGTCCG--G-ACTCC-------------------AGGA---------------------------------------------------------CCGG---------------A---TGCACAGTGAAACT--GGCGGGACAACAAATGAAAA--TTT-CGGTTGTGCAGGTTGC-------------------------------------------G-----------T--------TGCGCA
droEle1 scf7180000491249:2129911-2130064 + -GCACGG-------------------CTCAAAAAACAAATTTTC--------------------------------------------------GGCGCCCC-AATG--GCGCCCT-CTTCTCCTC-CGACAGTC----CATGTGCCTG--GTAATCC-------------------C-GT---------------------------------------------------------CCAG---------------C---TGCACAGTGGGACT--G---GGACGACAAATGAAAA--TTT-CGG---TGCAGGCTAT-----AAAGTG-----------------------------CGGGAA-----TT-TC--------CGCACT
droRho1 scf7180000777063:101092-101237 + -GCACGG-------------------CTCAAAAAACAAATCTCC--------------------------------------------------TGCGCCGA--ATG--GCGCCC-------TCTC-TGTCAGTC----CATGTGCCCG--GCAATCC-------------------G-GG---------------------------------------------------------CCGG---------------A---TGCACATTGGGACT--G---GGACAACAAATGAAAA--TTT-CGA---TGCAGGCTAT-----AAAGTG-----------------------------CGGGGT------T-TC--------CGCACA
droFic1 scf7180000454105:1471583-1471730 - GGCACGG-------------------CTCAAAAAACAAATCTCC--------------------------------------------------GGCGCCGT--TCG--GCGCCC-C-----TTTC-CGGCAGTC----CATGTGCCCG--G-AGTTC-------------------C-GT---------------------------------------------------------CCTG---------------ACT-GGCACAGCGGGACT--G---GGACAACAAATGAAAA--TTT-CGG---AGCAGGCG-T-----AAAGTT-----------------------------CGCGCT------T-TT--------CGCGCA
droKik1 scf7180000302577:1340103-1340249 - -GCACGT-------------------CTCAAAAAACAAATCTCC--------------------------------------------------GGCTTTGC--ATC--TTTG----CTCCGCCCT-TGCCAGTT----TCTGTGCTCC----------TGGATGT-----------C-TC---------------------------------------------------------CAGG---------------A---TGCACA----GACT------GGACAACAAATGAAAA--TTT-CGA---TGCAGGTTTG--ATTG-ATCC-----------------------------CTCGAT-----CA-AT--------CGCTCT
droAna3 scaffold_13337:8958762-8958919 + -GCACGA-------------------CTCA--AAACAAATCTCC--------------------------------------------------ACCGCCTCCGCCG--GCGGCCT-TTGTTCCAT-TTGTGCTC----CACCTGC--G--T-GCTCCTTGGATGTCGGAGGCA---T-CC---------------------------------------------------------CCGG---------------A---GGCACAGCGTGATGTCAGCTGGACAACAAATTAAAA--TTTCAGG---TGCAGGTG------------------------------------------CTCGGT--------------------GGCA
droBip1 scf7180000395984:8994-9135 + -GCACGA-------------------CTCA--AAACAAATCTCC--------------------------------------------------ACCGCCACCGCCG--GCGGCC-------TGTG------TTC----CATGTCGGCG--T-GCTCCTTGGATGTCG-AG---T----CC---------------------------------------------------------CCGG---------------A---GGCACAGCGCGATC--G-CTGGACAACAAATTAAAA--TTTCGGG---TGCAGGTG------------------------------------------CACGGT--------------------GGCA
dp5 XR_group8:4023124-4023331 - -GCACGG-------------------CTCACAAAACAAATTTCTG-------------------------------------------------GGCGCCCT--TACGCGCGCTT-------TCTC-GGGCAGTC----CCTTGGCTCC----------C-------G-GC---TCCC-GG-------CCACCGGACACACCTCGCTTCTGGGGTCGTGGTAGGAGTCGGGAACGGGC--A------------------C-ATTACAGTGGAACT--G---CCACAACAAATTAAAA--TTTTCGG---TGCAGGACGTGTCCC---------------------------GATGCCTGTGCGGCGG---AACAA--------CAAGCA
droPer2 scaffold_29:255254-255468 - -GCACGG-------------------CTCACAAAACAAATTTCTG-------------------------------------------------GGCGCCCT--TACGCGCGCTT-------TCTC-GGGCAGTC----CCTTGGCTCC----------C-------G-GC---TCCC-GGCTTCCGGCCACCGGACACACCTCGCTTCTGGGGTCGTGGTAGGAGTCGGGAACGGGC--A------------------C-ATTACAGTGGAACT--G---CCACAACAAATTAAAA--TTTTCGG---TGCAGGACGTGTCCC---------------------------GATGCCTGTGCGGCGG---AACAA--------CAAGCA
droWil2 scf2_1100000004822:2988825-2989026 + -GCACAG-----------------A-TTTAAAAAACAATTTTAATTTTCTCTTTTTCGTTTCTCTTTTCTTTCTTTTTTTTTTTTTTTTGATATGGCGCCTT--TTG--ATCGCC-------TTTC-GAGCAGTC----CTTGTACTCC--T-TTTTA-------------------G-G------------------------------------------------------------GGATTTTTTTTTTTTTAATTGTGTACAGTGGGACC--G------CAACAAATGAAAAATTTT-CAA---TGCAGCATGT-----C-AGAA-----------------------------A--------------T--------ACTGCG
droVir3 scaffold_13049:7548763-7548936 - -ACATCGCTGCGCCCAAGTGGCGCAG-ATACAAAACAATTTTTGT-------------------------------------------------TGCGCTTT--CAA--AAATGC-------GCGT-GAACAGTT----CGTGTCCAG----------------------------------------------------------------------------------------GTC--------------------C-AGGACAGTGGGACT--G---TG---ACAAATGAAAAA-TTT-CGA---TGCAGGATGA-----AAAGTGCGCCACGGGCGAGCCAT--TTGAT--------GGCGCCGC---AG--------CGCACT
droMoj3 scaffold_6680:5801299-5801465 - -AGACGC-----------------AGATACAAAAACAAATCTTGC-------------------------------------------------TGCGCTTC--AAT--GCGCG-----------T-GAACAGTC----CGTGTCCAGG--T-ACTTG-------------------A-TT---------------------------------------------------------CGTC---------------G---TGGACAGTGGAACT--G---TGAC---AAATAAAAAA-TTT-CGA---TGCAGGATGA-----AGAGTGTGCCGCTGACTTGCCAT--TTAAT-------TGGCGCTAC---AG-------CTGCACT
droGri2 scaffold_15110:5330784-5330960 + CGCAGAG--------------------GTACAAAACAAATTTAGC-------------------------------------------------TGCGC-----TTA--GAGCGC-------GCTT-GAACAGTC----CTTGTGCTGGCGGCATTAT-------------------A-TC------------------------------------------------------CGTC--------------------C-AAGACAGTGGAACT--G---CGA---CAAATGAAAAATTTT-CGA---TGCAGGATGA-----AAAGTGCGCTAAT-GCTGGCCGTGCTTAATGCTT---C-AG-----C--AACCGGTAGCGGCACT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
-GCACGA-------------------CTCAAAAAACAATTCTCC--------------------------------------------------GGCGCCAC--ATG--GCGCCC-------TCTC-CGGCAGTC----CATGTGCCCG--G-GCTCC-------------------G-GT---------------------------------------------------------CCGG---------------A---TGCACAGTGGGACT--G---GGACAACAAATGAA-A--TTT-GGG---TGCAGTTCGT-----G-AGCG-----------------------------CGCTTT------C-TT--------CGCGCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................T---------------------------------------------------------CCGG---------------A---TGCACAGTGGGACT--G---............................................................................................................2116.00633000000000000000
.....................................................................................................................................................................................................................................................................................................AA-A--TTT-GGG---TGCAGTTCGT-----G-A..............................................................2111.00100000010000000000
.............................................................................................................................................................................................................................................................................................................T-GGG---TGCAGTTCGT-----G-AGCG-----------------------------CG............................2111.00100000010000000000
..................................................................................................................................................................................................................................................................................T--G---GGACAACAAATGAA-A--TTT-G.....................................................................................2111.00100010000000000000
...............................................................................................................................CGGCAGTC----CATGTGCCCG--G-GC..........................................................................................................................................................................................................................................2111.00110000000000000000
...................................................................................................................................................................................................................................................................................................TGAA-A--TTT-GGG---TGCAGTTCGT-----G-AGCG-----------------------------CGC...........................2911.00100000010000000000
....................................................................................................................................................................................T---------------------------------------------------------CCGG---------------A---TGCACAGTGGGACT--G---T...........................................................................................................2211.00101000000000000000
...............................................................................................................................................................................................................................................CGG---------------A---TGCACAGTGGGACT--G---............................................................................................................1911.00101000000000000000
...................................................................................................................................................................................GT---------------------------------------------------------CCGG---------------A---TGCACAGTGGGACT--................................................................................................................2111.00110000000000000000
.....................................................................................................................................................................................................................................................................TGCACAGTGGGACT--G---GGACA.......................................................................................................2011.00100000010000000000
droSec2
-GCACGA-------------------CTCAAAAAACAATTCTCC--------------------------------------------------GGCGCCAC--ATG--GCGCCC-------TCTC-CAGCAGTG----CATGTGCCCG--G-GCTCC-------------------G-GT---------------------------------------------------------CCGG---------------A---TGCACAGTGGGACT--G---GGACAACAAATGAAAA--TTT-GGG---TGCAGTTCGT-----G-AGTG-----------------------------CGCTTT------C-TT--------CGCGCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................................G---------------A---TGCACAGTGGGACT--G---GGAT........................................................................................................2111.0010100
...............................................................................................................................................................................................................................................................................................................GGG---TGCAGTTCGT-----G-AGTG-----------------------------CGC...........................2111.0010100
...........................................................................................................................................................TCC-------------------G-GT---------------------------------------------------------CCGG---------------A---TGCACAGTGG......................................................................................................................2111.0011000
dm3
-GCACGG-------------------CTCAAAAAACAATTCTCT--------------------------------------------------GGCGCCAC--CTG--GCGCCC-------TCTC-TCGCAGTC----CATGTGCCCG--G-ACTCC-------------------G-GG---------------------------------------------------------CCGG---------------A---TGCACAGTGGGACT--G---GGACAACAAATGAAAA--TTT-GGG---TGCAGTTCGT-----G-AGCG-----------------------------CGCGTT------T-TT--------CGCGCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................................................................................................................................AAAA--TTT-GGG---TGCAGTTCGT-----G-...............................................................21114.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000700020000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...........................................................................................................................................................................................................................................................................................................TTT-GGG---TGCAGTTCGT-----G-AGCG-----------------------------..............................21112.00120000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000001000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000010000
............................................................................................................................................................................................................................................................................................................TT-GGG---TGCAGTTCGT-----G-AGCG-----------------------------C.............................2117.0070000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000001000000000000000001000000000000000000000000000000000000000010000
...............................................................................................................................................................................................................................................................................................................GGG---TGCAGTTCGT-----G-AGCG-----------------------------CGC...........................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020010000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
..........................................................................................................................TCTC-TCGCAGTC----CATGTGCCC.................................................................................................................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................CGT-----G-AGCG-----------------------------CGCGTT------T-TT--------CGCG..2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................A---TGCACAGTGGGACT--G---GGACA.......................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000010000
.............................................................................................................................................................................................................................................................................................................T-GGG---TGCAGTTCGT-----G-AGCG-----------------------------CG............................2115.0050000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000001000000
...............................................................................................................................................................................................................................................................................................................GGG---TGCAGTTCGT-----G-AGCG-----------------------------CGCG..........................2215.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................ACTCC-------------------G-GG---------------------------------------------------------CCGG---------------A---TGCACAGT........................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................................................................AAA--TTT-GGG---TGCAGTTCGT-----G-A..............................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000010000
............................CAAAAAACAATTCTCT--------------------------------------------------GGCGC..................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................CGG---------------A---TGCACAGTGGGACT--G---GG..........................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................A--TTT-GGG---TGCAGTTCGT-----G-AGC............................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000010010
.............................AAAAAACAATTCTCT--------------------------------------------------GGCGCC.................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................GG---TGCAGTTCGT-----G-AGCG-----------------------------CGCG..........................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TGCAGTTCGT-----G-AGCG-----------------------------CGCGTT------..................2113.0030000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................G---------------A---TGCACAGTGGGACT--G---GGAC........................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................G---------------------------------------------------------CCGG---------------A---TGCACAGTGGGACT--G---............................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................GG---------------A---TGCACAGTGGGACT--G---GGA.........................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................TT-GGG---TGCAGTTCGT-----G-AGCG-----------------------------CGC...........................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
...........................................................................................................................................................................................................................................................................GTGGGACT--G---GGACAACAAATG................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................GCAGTTCGT-----G-AGCG-----------------------------CGCGTT------T-................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000010
.......................................................................................................................................................................................................................................................................CACAGTGGGACT--G---GGACAAC.....................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................GG---TGCAGTTCGT-----G-AGCG-----------------------------CGC...........................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................TTT-GGG---TGCAGTTCGT-----G-AGC............................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000010000
..............................................................................................................................................................................................................................................CCGG---------------A---TGCACAGTGGGACT--G---G...........................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................TGGGACT--G---GGACAACAAATGA...............................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................TT-GGG---TGCAGTTCGT-----G-AGC............................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.....................................................................................................................................................................................................................................................................TGCACAGTGGGACT--G---GGACAAA.....................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................T-GGG---TGCAGTTCGT-----G-AGCG-----------------------------CGA...........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................ATGAAAA--TTT-GGG---TGCAGTTC........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................G-GG---------------------------------------------------------CCGG---------------A---TGCACAGTGGGACT--................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...........................................................................................................................................................................................................................................................................................................TTT-GGG---TGCAGTTCGT-----G-AGCG-----------------------------C.............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................GTGGGACT--G---GGACAACAAAT.................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................GAAAA--TTT-GGG---TGCAGTTCGT-----.................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................G---TGCAGTTCGT-----G-AGCG-----------------------------CGCGT.........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.................................................................................................................................................................................................................................................................................CT--G---GGACAACAAATGAAAA--TT........................................................................................2111.0010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................G---------------------------------------------------------CCGG---------------A---TGCACAGTGGGACT--G---G...........................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...........................................................................................................................................................TCC-------------------G-GG---------------------------------------------------------CCGG---------------A---TGCACAGTGG......................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TGCAGTTCGT-----G-AGCG-----------------------------CGCG..........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................CAATTCTCT--------------------------------------------------GGCGCCAC--CTG--G.......................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................CCAC--CTG--GCGCCC-------TCTC-TCG...................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................TTCGT-----G-AGCG-----------------------------CGCGTT------T-TT--------CGC...2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................AAAAAACAATTCTCT--------------------------------------------------GGCGCCA................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................GTTCGT-----G-AGCG-----------------------------CGCGTT------T-TT--------C.....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................AGTGGGACT--G---GGACAACAAATG................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................TTT-GGG---TGCAGTTCGT-----G-AGCG-----------------------------T.............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................C-------TCTC-TCGCAGTC----CATGTGCC..................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
....................................................................................................AC--CTG--GCGCCC-------TCTC-TCGCAGT...............................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................CC-------------------G-GG---------------------------------------------------------CCGG---------------A---TGCACAGTGGG.....................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................GGACT--G---GGACAACAAATGA...............................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................A--TTT-GGG---TGCAGTTCGT-----G-AGCG-----------------------------C.............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................TC-TCGCAGTC----CATGTGCCCG--G-............................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................CACAGTGGGACT--G---GGACAC......................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................CAAATGAAAA--TTT-GGG---TGCAG...........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................TGAAAA--TTT-GGG---TGCAGTTCG.......................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................AAATGAAAA--TTT-GGG---TGCAGT..........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................AA--TTT-GGG---TGCAGTTCGT-----G-AG.............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................C-------------------G-GG---------------------------------------------------------CCGG---------------A---TGCACAGTGGGA....................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
................................................................................................................................................................................................................................................GG---------------A---TGCACAGTGGGACT--G---GGAT........................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................TTCGT-----G-AGCG-----------------------------CGCGTT------T-TT--------CG....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................CC-------TCTC-TCGCAGTC----CATGTGCCCG--G-............................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
-GCACGG-------------------CTCAAAAAACAAATCTCC--------------------------------------------------GGCGCCAC--ATG--GCGCCC-------TCTC-CGGCAGTCCGTCCGTGTGCCCG--G-GCTCC-------------------G-GG---------------------------------------------------------CCGG---------------A---TGCACAGTGGGACT--G---GGACAACAAATGAAAA--CTT-TGG---TGCAGGTCGT-----G-AGCG-----------------------------CGTGTT------T-TT--------CGCGCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................G---------------------------------------------------------CCGG---------------A---TGCACAGTGGGACT--G---G...........................................................................................................2211.0011000000
.................................................................................................................................................................................................................................................G---------------A---TGCACAGTGGGACT--G---GGA.........................................................................................................2011.0010000100
droYak3
-GCACGG-------------------CTCAAAAAACAAATCTCC--------------------------------------------------GGCGCCAC--ATG--GCGCCC-------TCTC-CGGCAGTCCGTCCATGTGCCCG--G-ACTCC-------------------G-GG---------------------------------------------------------CCGG---------------A---TGCACAGTGGGACT--G---GGACAACAAATGAAAA--TTT-TGG---TGCAGGTCGT-----G-AGCG-----------------------------CGCGTT------T-TT--------CGCGCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................................................................G---------------A---TGCACAGTGGGACT--G---GGATT.......................................................................................................2211.00101000000000
....................................................................................................................................................................................G---------------------------------------------------------CCGG---------------A---TGCACAGTGGGACT--G---............................................................................................................2111.00101000000000
droEug1
-GCATGG-------------------CTCTAAAAACAAATCTTC--------------------------------------------------CGCGCCAC--TTA--GCGCCC-------TTTC-TGGCAGTC----CATGTGCC-G--G-GCTCT-------------------G-GG---------------------------------------------------------CCGG---------------A---TGCACATTGGAACT--G---GGACAACAAATGAAAA--TTT-CGA---TGCAGGTTGT-----AAAATA-----------------------------CGCGAT------T-TA--------CACGCASizeHit CountTotal NormTotal
No Reads
droBia1
-GCACGG-------------------CTCAAAAAACAAATCTCC--------------------------------------------------GGGGCCTA--GTG--GCGCCC-A-----TCTC-CGGCAGTC----CATGTGCCCG--G-TCACC-------------------G-GG---------------------------------------------------------CCGG---------------A---TGCACAATGGGACT--G---GGACAACAAATGAAAA--TTT-CGA---TGCAGGCTAT-----GAAGTG-----------------------------CGCGAT-T---AAAAG--------CGCACASizeHit CountTotal NormTotal
No Reads
droTak1
-GCACGG-------------------CTCAAAAAACAAATCTCC--------------------------------------------------GGCGCCAC--TTGGGGCGCCC-A-----TCTCCGCGCAGTC----CAAGTGTCCG--G-ACTCC-------------------AGGA---------------------------------------------------------CCGG---------------A---TGCACAGTGAAACT--GGCGGGACAACAAATGAAAA--TTT-CGGTTGTGCAGGTTGC-------------------------------------------G-----------T--------TGCGCASizeHit CountTotal NormTotal
No Reads
droEle1
-GCACGG-------------------CTCAAAAAACAAATTTTC--------------------------------------------------GGCGCCCC-AATG--GCGCCCT-CTTCTCCTC-CGACAGTC----CATGTGCCTG--GTAATCC-------------------C-GT---------------------------------------------------------CCAG---------------C---TGCACAGTGGGACT--G---GGACGACAAATGAAAA--TTT-CGG---TGCAGGCTAT-----AAAGTG-----------------------------CGGGAA-----TT-TC--------CGCACTSizeHit CountTotal NormTotal
No Reads
droRho1
-GCACGG-------------------CTCAAAAAACAAATCTCC--------------------------------------------------TGCGCCGA--ATG--GCGCCC-------TCTC-TGTCAGTC----CATGTGCCCG--GCAATCC-------------------G-GG---------------------------------------------------------CCGG---------------A---TGCACATTGGGACT--G---GGACAACAAATGAAAA--TTT-CGA---TGCAGGCTAT-----AAAGTG-----------------------------CGGGGT------T-TC--------CGCACASizeHit CountTotal NormTotal
No Reads
droFic1
GGCACGG-------------------CTCAAAAAACAAATCTCC--------------------------------------------------GGCGCCGT--TCG--GCGCCC-C-----TTTC-CGGCAGTC----CATGTGCCCG--G-AGTTC-------------------C-GT---------------------------------------------------------CCTG---------------ACT-GGCACAGCGGGACT--G---GGACAACAAATGAAAA--TTT-CGG---AGCAGGCG-T-----AAAGTT-----------------------------CGCGCT------T-TT--------CGCGCASizeHit CountTotal NormTotal
No Reads
droKik1
-GCACGT-------------------CTCAAAAAACAAATCTCC--------------------------------------------------GGCTTTGC--ATC--TTTG----CTCCGCCCT-TGCCAGTT----TCTGTGCTCC----------TGGATGT-----------C-TC---------------------------------------------------------CAGG---------------A---TGCACA----GACT------GGACAACAAATGAAAA--TTT-CGA---TGCAGGTTTG--ATTG-ATCC-----------------------------CTCGAT-----CA-AT--------CGCTCTSizeHit CountTotal NormTotal
No Reads
droAna3
-GCACGA-------------------CTCA--AAACAAATCTCC--------------------------------------------------ACCGCCTCCGCCG--GCGGCCT-TTGTTCCAT-TTGTGCTC----CACCTGC--G--T-GCTCCTTGGATGTCGGAGGCA---T-CC---------------------------------------------------------CCGG---------------A---GGCACAGCGTGATGTCAGCTGGACAACAAATTAAAA--TTTCAGG---TGCAGGTG------------------------------------------CTCGGT--------------------GGCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................ATCTCC--------------------------------------------------ACCGCCTCCGCCG--GC......................................................................................................................................................................................................................................................................................2112.002200000
........................................................................................................................................................................GAGGCA---T-CC---------------------------------------------------------CCGG---------------A---GGCACAG.........................................................................................................................2111.001100000
......................................................................................................................................................................................................................................................................GCACAGCGTGATGTCAGCTGG..........................................................................................................2111.001000001
.............................................................................................................................................................................................................................................................................................................TCAGG---TGCAGGTG------------------------------------------CTCGGT--------------------....1911.001100000
...............................................................................................................................................................................................................................................................................................................AGG---TGCAGGTG------------------------------------------CTCGGT--------------------GTT.2011.001100000
..........................................................................................................................CCAT-TTGTGCTC----CACCTGC--G--T-T...........................................................................................................................................................................................................................................2211.001100000
................................................................................................................................................GC--G--T-GCTCCTTGGATGTCGGA...........................................................................................................................................................................................................................2111.001100000
.............................................................................................................................................................................A---T-CC---------------------------------------------------------CCGG---------------A---GGCACAGCGTGA....................................................................................................................2111.001000001
............................................................................................................................................................................CA---T-CC---------------------------------------------------------CCGG---------------A---GGCACAGCGTG.....................................................................................................................2111.001100000
...........................................................................................................................................CACCTGC--G--T-GCTCCTTGGATG................................................................................................................................................................................................................................2111.001100000
......................................................................................................CGCCG--GCGGCCT-TTGTTCCAT-......................................................................................................................................................................................................................................................................2111.001100000
.........................................................................................................................TCCAT-TTGTGCTC----CACCTGC--G--..............................................................................................................................................................................................................................................2111.001100000
..................................................................................................................................................................ATGTCGGAGGCA---T-CC---------------------------------------------------------CCGG---------------A---GG..............................................................................................................................2211.001100000
...........................................................................................................................................................................................................................................................................................................TTTCAGG---TGCAGGTG------------------------------------------CTCGG.........................2011.001100000
.............................................................................................................................................................................................................................................................................................................TCAGG---TGCAGGTG------------------------------------------CTCGGT--------------------GG..2111.001000010
....................................................................................................................................................................................................................................................................................................TAAAA--TTTCAGG---TGCAGGTG------------------------------------------C.............................2111.001100000
droBip1
-GCACGA-------------------CTCA--AAACAAATCTCC--------------------------------------------------ACCGCCACCGCCG--GCGGCC-------TGTG------TTC----CATGTCGGCG--T-GCTCCTTGGATGTCG-AG---T----CC---------------------------------------------------------CCGG---------------A---GGCACAGCGCGATC--G-CTGGACAACAAATTAAAA--TTTCGGG---TGCAGGTG------------------------------------------CACGGT--------------------GGCASizeHit CountTotal NormTotal
No Reads
dp5
-GCACGG-------------------CTCACAAAACAAATTTCTG-------------------------------------------------GGCGCCCT--TACGCGCGCTT-------TCTC-GGGCAGTC----CCTTGGCTCC----------C-------G-GC---TCCC-GG-------CCACCGGACACACCTCGCTTCTGGGGTCGTGGTAGGAGTCGGGAACGGGC--A------------------C-ATTACAGTGGAACT--G---CCACAACAAATTAAAA--TTTTCGG---TGCAGGACGTGTCCC---------------------------GATGCCTGTGCGGCGG---AACAA--------CAAGCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................TTTTCGG---TGCAGGACGTGTCC..................................................................2111.0010100000000
...................................................................................................................................................................................................................................................................C-ATTACAGTGGAACT--G---CCAC........................................................................................................2011.0010100000000
droPer2
-GCACGG-------------------CTCACAAAACAAATTTCTG-------------------------------------------------GGCGCCCT--TACGCGCGCTT-------TCTC-GGGCAGTC----CCTTGGCTCC----------C-------G-GC---TCCC-GGCTTCCGGCCACCGGACACACCTCGCTTCTGGGGTCGTGGTAGGAGTCGGGAACGGGC--A------------------C-ATTACAGTGGAACT--G---CCACAACAAATTAAAA--TTTTCGG---TGCAGGACGTGTCCC---------------------------GATGCCTGTGCGGCGG---AACAA--------CAAGCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
-GCACAG-----------------A-TTTAAAAAACAATTTTAATTTTCTCTTTTTCGTTTCTCTTTTCTTTCTTTTTTTTTTTTTTTTGATATGGCGCCTT--TTG--ATCGCC-------TTTC-GAGCAGTC----CTTGTACTCC--T-TTTTA-------------------G-G------------------------------------------------------------GGATTTTTTTTTTTTTAATTGTGTACAGTGGGACC--G------CAACAAATGAAAAATTTT-CAA---TGCAGCATGT-----C-AGAA-----------------------------A--------------T--------ACTGCGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
-ACATCGCTGCGCCCAAGTGGCGCAG-ATACAAAACAATTTTTGT-------------------------------------------------TGCGCTTT--CAA--AAATGC-------GCGT-GAACAGTT----CGTGTCCAG----------------------------------------------------------------------------------------GTC--------------------C-AGGACAGTGGGACT--G---TG---ACAAATGAAAAA-TTT-CGA---TGCAGGATGA-----AAAGTGCGCCACGGGCGAGCCAT--TTGAT--------GGCGCCGC---AG--------CGCACTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................................................GGATGA-----AAAGTGCGCCACGG...................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.........................................TTGT-------------------------------------------------TGCGCTTT--CAA--AAATGC-------...........................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................GCGT-GAACAGTT----CGTGTCCAG----------------------------------------------------------------------------------------GTC--------------------..................................................................................................................................2411.001000000000000000000000000100000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................TGAAAAA-TTT-CGA---TGCAGGATG.......................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
droMoj3
-AGACGC-----------------AGATACAAAAACAAATCTTGC-------------------------------------------------TGCGCTTC--AAT--GCGCG-----------T-GAACAGTC----CGTGTCCAGG--T-ACTTG-------------------A-TT---------------------------------------------------------CGTC---------------G---TGGACAGTGGAACT--G---TGAC---AAATAAAAAA-TTT-CGA---TGCAGGATGA-----AGAGTGTGCCGCTGACTTGCCAT--TTAAT-------TGGCGCTAC---AG-------CTGCACTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................CGCTTC--AAT--GCGCG-----------T-GAACAG................................................................................................................................................................................................................................................................2111.001100000
...........................................................................................................................................................................................................................................................................................................................ATGA-----AGAGTGTGCCGCTGAC.................................................2011.001000001
.................................................................................................................................................................................................................................................................................................AATAAAAAA-TTT-CGA---TGCAGG..........................................................................2111.001100000
...............................................................................................................................................................................................................................................................................................................................................................AAT-------TGGCGCTAC---AG-------CTGCAC.2011.001100000
.....................................................................................................................................................................................................................................................................................................................TGCAGGATGA-----AGAGTGTGCCG......................................................2111.001000001
....................................................................................................................................................................................................................................................................................................................................AGAGTGTGCCGCTGACTTGCC............................................2111.001100000
............................................................................................................................................................................................................................................................................................................TT-CGA---TGCAGGATGA-----AGAGTG...........................................................2111.001100000
...............................................................................................................................................TCCAGG--T-ACTTG-------------------A-TT---------------------------------------------------------CGTC---------------G---T...............................................................................................................................2111.001100000
.....................................................................................................................................................................................................................................................................................................AAAAA-TTT-CGA---TGCAGGATGA-----.................................................................2111.001100000
droGri2
CGCAGAG--------------------GTACAAAACAAATTTAGC-------------------------------------------------TGCGC-----TTA--GAGCGC-------GCTT-GAACAGTC----CTTGTGCTGGCGGCATTAT-------------------A-TC------------------------------------------------------CGTC--------------------C-AAGACAGTGGAACT--G---CGA---CAAATGAAAAATTTT-CGA---TGCAGGATGA-----AAAGTGCGCTAAT-GCTGGCCGTGCTTAATGCTT---C-AG-----C--AACCGGTAGCGGCACTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/15/2015 at 03:05 PM