ID:

dsi_15597

 Coordinate:

3r:17386605-17386665 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-2.3 -2.3 -2.0

Flybase annnotation

five_prime_UTR [3r_17386234_17386783_-]; exon [3r_17386189_17386783_-]

No Repeatable elements found

Sense Strand Reads

#################################################################################################################################################################
AGTTCGATTTTTCGGTCATACCAATTAAGGTAAAATGATCCCTTAGCCATGTAATCCATTTGTAGAGCACTGACAATTCTGACAATTTAAAAATTGATATAAAAATTGTAGCTTAAACTTATGCGCCCATCTCCAAATCAAATGTATTTTGACTGGCCTAT
**************************************************......................((((((....(((((....))))).......))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M024
male body		 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
..............................................................................................................................................TGTATTTTGACTGGCCTAT 19 0 1 1.00 1 1 0 0 0 0
...................................................................CACTGACAATTCTGACAATT.......................................................................... 20 0 1 1.00 1 0 1 0 0 0
...........................................................................................................................................AAATGTATTTTGACTGGCCTA. 21 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................AATGTATTTTGACTGGCCTAT 21 0 1 1.00 1 1 0 0 0 0
.........................................................GTTGGTAGAGCACTGACT...................................................................................... 18 3 20 0.05 1 0 0 0 1 0
........CTGTCGGTCATACCA.......................................................................................................................................... 15 2 20 0.05 1 0 0 1 0 0
.........................................................................TAATTCGGACACTTTAAAAA.................................................................... 20 3 20 0.05 1 0 0 0 0 1
...............................................................AGAGCACTGACAAGACTC................................................................................ 18 3 20 0.05 1 0 0 1 0 0

Anti-sense strand reads

TCAAGCTAAAAAGCCAGTATGGTTAATTCCATTTTACTAGGGAATCGGTACATTAGGTAAACATCTCGTGACTGTTAAGACTGTTAAATTTTTAACTATATTTTTAACATCGAATTTGAATACGCGGGTAGAGGTTTAGTTTACATAAAACTGACCGGATA
**************************************************......................((((((....(((((....))))).......))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
..........................................................................................................................TGCGGGTAGAGGTTTAGTTT................... 20 1 1 5.00 5 5 0 0 0 0 0 0
..........................................................................................................................TGCGGGTAGAGGTTTAGTTTA.................. 21 1 1 3.00 3 3 0 0 0 0 0 0
.......................................GGGAATCGGTACATTAGGTA...................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0
..........................................................................................................................CGCGGGTAGAGGTTTAGTTTA.................. 21 0 1 2.00 2 2 0 0 0 0 0 0
...................................................................................................................TTGAATACGCGGGTAGAGGTT......................... 21 0 1 2.00 2 2 0 0 0 0 0 0
.........................................................................................................................ACGCGGGTAGAGGTTTAGTT.................... 20 0 1 2.00 2 2 0 0 0 0 0 0
........................................................................................................................TACGCGGGTAGAGGTTTAGTTT................... 22 0 1 2.00 2 2 0 0 0 0 0 0
...........................................................................................................................GCGGGTAGAGGTTTAGTTT................... 19 0 1 2.00 2 2 0 0 0 0 0 0
......................................AGGGAATCGGTACGTTAGGT....................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................TTTGCGGGTAGAGGTTTAGTTT................... 22 2 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................ACATAAAACTGACCGGAT. 18 0 1 1.00 1 1 0 0 0 0 0 0
...................................TCTAGGGAATCGGTACATTAGGT....................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................TATGGGTAGAGGTTTAGTTTACAT............... 24 3 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................TTGAATACGCGGGTAGAGGTTT........................ 22 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................CGTACGCGGGTAGAGGTTTAGT..................... 22 2 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................ATTGCGGGTAGAGGTTTAGTTTA.................. 23 3 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................TTACGCGGGTAGAGGTTTAGTT.................... 22 1 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................CGCGGGTAGAGGTTTAGTTT................... 20 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................TTTGCGGGTAGAGGTTTAGTT.................... 21 2 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................TTGCGGGTAGAGGTTTAGTTT................... 21 2 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................CGGGTAGAGGTTTAGTTTACA................ 21 0 1 1.00 1 0 0 1 0 0 0 0
...................................................ATTAGGTAAACATCTCGTGACTGTT..................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................AATGCGGGTAGAGGTTTAGTTT................... 22 2 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................GAATACGCGGGTAGAGGTTTA....................... 21 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................GGACTGTTAAGACTGTT............................................................................ 17 1 2 1.00 2 0 2 0 0 0 0 0
........................................................................................................................TACGCGGGTAGAGGTTTAGTT.................... 21 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................TTACATAAGACTGGCCGGATA 21 2 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................TTACGCGGGTAGAGGTTTAGT..................... 21 1 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................TGCGGGTAGAGGTTTAGTTTAC................. 22 1 1 1.00 1 1 0 0 0 0 0 0
......................................TGGGAATCGGTATATTAGGT....................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................AATACGCGGGTAGAGGTTTAGT..................... 22 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................TATACGCGGGTAGAGGTTTAGT..................... 22 1 1 1.00 1 1 0 0 0 0 0 0
......................................AGGGAATCGGTACATTAGGT....................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................CTGTTAAGACTGTTA........................................................................... 15 0 2 0.50 1 0 1 0 0 0 0 0
............................................................ACATCTCGAGACTGT...................................................................................... 15 1 2 0.50 1 0 1 0 0 0 0 0
....................................................................GGACTGTTAAGACTGT............................................................................. 16 1 3 0.33 1 0 1 0 0 0 0 0
.......................................................................................................................TTTTGCGGGTAGAGGTTTAGTT.................... 22 3 3 0.33 1 1 0 0 0 0 0 0
.................................................................TCATCGCTGTTAAGACTGTT............................................................................ 20 3 5 0.20 1 0 1 0 0 0 0 0
.......................................................................CAGTTAAGACTGTTA........................................................................... 15 1 6 0.17 1 0 1 0 0 0 0 0
...................................................................................................................TTTAACACGCGGGTACAGGT.......................... 20 3 15 0.13 2 2 0 0 0 0 0 0
........................................................................TGTTAAGACTGTTAG.......................................................................... 15 1 16 0.06 1 0 0 0 1 0 0 0
.........................................................................GTTAAGACTGTTAGA......................................................................... 15 1 16 0.06 1 0 0 1 0 0 0 0
........................................................................GGTTAAGACTGTTAA.......................................................................... 15 1 17 0.06 1 0 1 0 0 0 0 0
..........................................................................................................................TTTGGGTAGAGGTTTAGTTTA.................. 21 3 18 0.06 1 1 0 0 0 0 0 0
........................................................................AGTTAAGACTGTTAA.......................................................................... 15 1 20 0.05 1 0 0 1 0 0 0 0
......................................AGCCAATAGGTACATTAGG........................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 1
..................ATGGTTAATTCCATA................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 0 1 0
.......................................................................CGGGTAAGACTGTTAATTT....................................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0

Generated: 04/23/2015 at 06:19 PM