ID:

dsi_15594

 Coordinate:

3l:15621969-15622118 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-9.6 -9.5 -9.5 -9.4

Flybase annnotation

exon [3l_15620736_15621968_-]; CDS [3l_15620736_15621968_-]; intron [3l_15621969_15623097_-]

No Repeatable elements found

mature
  1. 2l:13099911-13099928 -
  2. dsi_15594  3l:15622015-15622032 -
star

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTATTTATTTTCGACTTGTTGATCGCATTTAGAGATAGCCAAACGAATTTGTAGCGACTGCCTACCTTAACACTTAGTTAGTTGCTATTATGCACTTCGGCTATAGCTTTCGCATCCTAATCAGCGTGGGTTACGAAATGGAAAATCGAAAGATTGACTGAGTCACTAATAGAATATTTTTTCGTTTCGATTCTCTGCAGGACGGCGGCGAAGGACACGTGGGCACCGTTCGCAATTTCGAATCCGCCGA
****************************************************************************************************************************************..((.....((((((...........((.......))...........)))))).......))*************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 O002
Head
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
...................................................................................................................................................................................TTTCGTTTCGATTCTCTGCAGT................................................. 22 1 1 11.00 11 7 4 0 0 0 0 0 0
...................................................................................................................................................................................TTTCGTTTCGATTCTCTGCAGC................................................. 22 1 1 3.00 3 3 0 0 0 0 0 0 0
........................................................................................................................................AATGGAAAATCGAAAGAT................................................................................................ 18 0 2 1.00 2 1 1 0 0 0 0 0 0
...................................................................................................................................................................................TTTCGTTTCGATTCTCTGCA................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................CGGCGAAGGACACGTGGGCACCGT..................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................................ACGAAATGGAAAATCGAAAGAGTGAC............................................................................................ 26 1 1 1.00 1 0 0 0 1 0 0 0 0
.......................................................................................................................................AAATGGAAAATCGAAAGAT................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................TTTTTTCGTTTCGATTCTCTGC.................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TCGCAGTTTCGAATCC..... 16 1 5 0.20 1 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................................TCGCAAGTTCGAATC...... 15 1 5 0.20 1 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................................TCGCGAGTTCGAATCCGCCA. 20 3 6 0.17 1 0 0 0 0 1 0 0 0
..............................AGAGGTAGCCAAACGA............................................................................................................................................................................................................ 16 1 7 0.14 1 0 0 0 0 0 1 0 0
.................................................................................................................................................TCGAAAGAGTGACTGCGTA...................................................................................... 19 3 11 0.09 1 0 0 0 0 0 0 1 0
..............................AGAGGTAGCCAAACG............................................................................................................................................................................................................. 15 1 12 0.08 1 0 0 0 0 0 1 0 0
................................................................................................................................................CTCGAAAGAGTGACTGCGT....................................................................................... 19 3 12 0.08 1 0 0 0 0 1 0 0 0
..........................................................................................................................................................TGACTGAGTCCCTAAAAAAA............................................................................ 20 3 13 0.08 1 0 0 0 0 0 0 0 1
.....................................................................................................................................................................................................................................TCGCAAGTTCGAATCCT.... 17 2 16 0.06 1 0 0 0 0 1 0 0 0
............................................................................GTTAGTTGCTATCAGG.............................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................................TCGCATGTTCGAATCC..... 16 2 20 0.05 1 0 0 0 0 1 0 0 0

Anti-sense strand reads

AATAAATAAAAGCTGAACAACTAGCGTAAATCTCTATCGGTTTGCTTAAACATCGCTGACGGATGGAATTGTGAATCAATCAACGATAATACGTGAAGCCGATATCGAAAGCGTAGGATTAGTCGCACCCAATGCTTTACCTTTTAGCTTTCTAACTGACTCAGTGATTATCTTATAAAAAAGCAAAGCTAAGAGACGTCCTGCCGCCGCTTCCTGTGCACCCGTGGCAAGCGTTAAAGCTTAGGCGGCT
***************************************************..((.....((((((...........((.......))...........)))))).......))**************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
...............................CTCTATCGGTTTGCTTAA......................................................................................................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0
.................................................................................................................................................................................AAAAATCAAAGCTACGAGACGT................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0
......................................................................................................................................................................................................TTCTGCCGTAGCTTCCTGTGC............................... 21 3 2 0.50 1 0 0 1 0 0 0 0
..............................................................................................GGAGCCCATATCGAAAGAGT........................................................................................................................................ 20 3 3 0.33 1 0 0 0 1 0 0 0
..........................................................ACTGATGGAATTGTG................................................................................................................................................................................. 15 1 15 0.07 1 0 0 0 0 1 0 0
..........AGCTGAATAACAAGCGT............................................................................................................................................................................................................................... 17 2 15 0.07 1 0 0 0 1 0 0 0
...............................................AAAAATTGGTGACGGATGGA....................................................................................................................................................................................... 20 3 16 0.06 1 0 0 0 0 0 1 0
..........................................................................................................................................................................................................GCCGCGGCTTCCTGT................................. 15 1 17 0.06 1 0 0 0 0 0 0 1

Generated: 04/23/2015 at 04:26 PM