dsi_1557

################################################################################################################################################################ TAAACTCTCCACTGATCGGAGAGAAGACCAAGTTGGACGAGGCACAGATTGTCAAGAAGCCCTACGAGAACGGCGAGGCCAAGGACGGGGCTGGTCAGCAGCCCCTGCTGAATGGCAACGGTTCTGCCAATGGGGGTGCCAAGGAGGCACCCGAAAGCGG ************************************************....................((((............(((((((.....))))))).))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	M053 female body	M023 head	M025 embryo	GSM343915 embryo	SRR553485 Chicharo_3 day-old ovaries	SRR1275483 Male prepupae	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs
..............................................................................................................AATGGCAACGCTTCTGAC................................	18	2	4	12.75	51	28	0	21	2	0	0	0	0	0	0
....................GAGAAGACCAAGTTGGACGA........................................................................................................................	20	0	1	3.00	3	1	0	1	1	0	0	0	0	0	0
....................GAGAAGACCAAGTTGGAC..........................................................................................................................	18	0	1	3.00	3	3	0	0	0	0	0	0	0	0	0
....................GAGAAGACCAAGTTGGACGAGGCA....................................................................................................................	24	0	1	2.00	2	1	0	0	0	0	0	1	0	0	0
.............................................................................................................GAATGGCAACGGTTCTGCCAATGGGGGT.......................	28	0	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............................CAAGTTGGACGAGGCACA..................................................................................................................	18	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
......................GAAGACCAAGTTGGACGAGGC.....................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.GCACTCTCCACTGATCGGA............................................................................................................................................	19	2	1	1.00	1	0	0	0	1	0	0	0	0	0	0
................................TTGGACTAGGCACAGATTGTCAAGA.......................................................................................................	25	1	1	1.00	1	0	0	0	1	0	0	0	0	0	0
........................AGACCAAGTTGGACGAGGCA....................................................................................................................	20	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.....................................................AAGAAGCCCTACGAGAACGGCGAGGCCAA..............................................................................	29	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................AACGGTTCTGCCAATGGGGGTGCC....................	24	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................AACGGTTCTGCCAATGGGGGTGC.....................	23	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
..........................................................GCCCTACGAGAACGGCGAGGC.................................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................AGAGAAGACCAAGTTGGACGAGGCAC...................................................................................................................	26	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................CAAGTTGGACGAGGCACAGATT..............................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
....................................................................AACGGCGAGGCCAAGGACGG........................................................................	20	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................GGCACAGATTGTCAAGAAGCC...................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.............GATCGGAGAGAAGACCAAGTTGGACGA........................................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
........................................................................................................................GTTCTGCCAATGGGGGTGCC....................	20	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................CAAGGACGGGGCTGGTCAGC.............................................................	20	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................GTTGGACGAGGCACAGATT..............................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
........CCACTGATCGGAGAGAAGACCAA.................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
...................................................................................................................CAACGGTTCTGCCAATGGGGGTGC.....................	24	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................TTGCAACGGTTCTGCCAATGGGGGTGC.....................	27	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................TACGAGAACGGCGAGGCC................................................................................	18	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0
............................................................................GGCCAAGGACGGGGCTGGTCAGCAGC..........................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
...............................................................................GAAGGACAGGGCTGGTCA...............................................................	18	2	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..........................................CACAGATTGTCAAGAAGCC...................................................................................................	19	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0
................CGGAGAGAAGACCAAGTTGGACGA........................................................................................................................	24	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0
........CCACTGATCGGAGAGAAGACC...................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
............................................................................GGCCAAGGACGGGGCTGGTCAGC.............................................................	23	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
....................GAGAAGACCAAGTTGGACGAG.......................................................................................................................	21	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........................................................GCCCTACGAGAACGGCGAGGCCAAGGACG.........................................................................	29	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
...................................................................................................AGCCCCTGCTGAATGGCAACG........................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................AGACCAAGTTGGACCAGGCACAG.................................................................................................................	23	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................................GGCAACGGTTCTGCCAATGGGG.........................	22	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................GAACGGCGAGGCCAAGGAC..........................................................................	19	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...........................................ACAGATTGTCAAGAAGCC...................................................................................................	18	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.................................................................GAGAACGGCGAGGCCAAGGACGGGGC.....................................................................	26	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0
........................................................................................CGCTCGTCAGCAGCCTCTGCT...................................................	21	3	3	0.33	1	0	0	0	0	0	0	0	1	0	0
...........................................................................AGGCCCAGGACGGGCCTCG..................................................................	19	3	5	0.20	1	0	0	0	0	0	0	0	0	1	0
..............................................................................................................AATGGCAACGCTTCTGA.................................	17	2	20	0.10	2	0	0	0	0	0	1	0	1	0	0
.........................................................AGGCCGACGAGAACCGCGA....................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	0	1
...........................................AATGGTTGTCAAGAAGCCC..................................................................................................	19	3	20	0.05	1	0	0	0	1	0	0	0	0	0	0

ATTTGAGAGGTGACTAGCCTCTCTTCTGGTTCAACCTGCTCCGTGTCTAACAGTTCTTCGGGATGCTCTTGCCGCTCCGGTTCCTGCCCCGACCAGTCGTCGGGGACGACTTACCGTTGCCAAGACGGTTACCCCCACGGTTCCTCCGTGGGCTTTCGCC ************************************************....................((((............(((((((.....))))))).))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries
..................................CAAGCTCCGTGTCTAATAGTTC........................................................................................................	22	3	1	1.00	1	1	0	0
..............................................CTAAAAGTTCTTCAGGATG...............................................................................................	19	2	3	0.67	2	0	2	0
..............................TCAAACTGCTCCGTG...................................................................................................................	15	1	8	0.13	1	0	0	1
...........................................TGTCTAATAGTTCTT......................................................................................................	15	1	20	0.05	1	0	0	1

Species	Coordinate	ID	Alignment
droSim2	2r:18724358-18724517 -	dsi_1557	TAA--------ACTCTCCACTGATCGGAGAGAAGACCAAGTTGGACGAGGCACAGATTGTC---------------AAGAAGCCCTAC---GAGAACGGCGAGGCCAAGGACGGGGCTGGTCA---GCAGCCCCTGCTGAATGGCAACGGTTC---TGCCAATGGGGGTGCCAAGGAGGCACCCGAAAGCGG
droSec2	scaffold_13033:4-140 -		-----------ACTCTCCACTGATCGGAGAGAAGACCAAGTTGGACGAGGCACAGATTGTC---------------AAGAAGCCCTAC---GAGAACGGCGAGGCCAAGGACGGGGCTGGTCA-CAACAGCCCCTGCTGAATGGCAACGGTTC---TGCCAATGGGGGTG----------------------
dm3	chr2R:18186739-18186892 -		--------------CTCCACTGATCGGAGAGAAGACCAAATTGGACGAGGCACAGATTGTC---------------AAGAAGCCCTAC---GAGAACGGAGAGGCCAAGGACGGGGCTGGTCA---GCAGCCCCTGCTAAATGGCAACGGTTC---GGCCAATGGAGGTACCAAAGAGGCACCCGAAACCGG
droEre2	scaffold_4845:12327079-12327232 -		--------------CTCCACTGATCGGAGAGAAGACCAAGCTGGACGAGGCGCAGATTGTG---------------AAGAAGCCCTAC---GAGAACGGCGACGCCAAGGACGGCGCTGGTCA---GCAGCCCCTGCTGAATGGCAACGGTTC---GGCCAATGGAGGTGCCAAGGAGGCACCCGAAGCCGG
droYak3	2R:17937566-17937719 -		--------------CGCCACTGATCGGTGAGAAGACCAAACTGGACGAGGCACAGATTGTG---------------AAGAAGCCCTAC---GAGAACGGTGACGCCAAGGACGGGGCTGGTCA---GCAGCCCCTGCTCAATGGCAACGGGTC---GGCCAATGGAGGTGCCAAGGAGGCACCCGAAAGCGG
droEug1	scf7180000409672:6089143-6089296 -		--------------CTCCTCTGATCGGTGAGAAGACCAAGCTGGATGAGGCACAGATTGTT---------------AAGAAGCCCTAC---GAGAACGGAGAGACCAAGGACGGAGCTGGCCA---GCAGCCCCTGCTCAATGGCAATGGCTC---TGCCAATGGAGGTGCCAAGGATGCCCCCGAAAGCGA
droBia1	scf7180000302143:2525218-2525371 +		--------------CGCCGCTGATCGGCGAGAAGACCAAGCTGGACGAGGCTCAGATCGTG---------------AAGAAGCCGTAC---GAGAACGGAGAGACCAAGGACGGAGCTGGCCA---GCAGCCGCTGCTCAATGGCAACGGAAC---GGCTAACGGAGGCGCCAAGGAGGCCCCAGAAGGCGA
droTak1	scf7180000415739:40056-40201 -		-----------ACTCCCCCCTGATTGGTGAGAAGACCAAGCTGGACGAGGCCCAGATTGTA---------------AAGAAGCCGTATCCCGAGAACGGAGATACCAAGGATGCAGCTAACCA---GCAGCCGCTGCTCAATGGCAACGGATC---GGCGAATGGAGCTGCCAAGGAG--------------
droEle1	scf7180000491282:91521-91680 +		-----------ACTCGCCGCTGATCGGCGAGAAGACCAAACTGGACGACGCTCAGATCGTG---------------AAGAAGGCCTACGGTGAGAGCGCCGAGGCCAAGGACGGCGCTGGCCA---GCAGCCGCTGCTCAATGGCAATGGGTC---GGCCAATGGCAATGCCAAGGAGGCCACCGAAGGCAA
droRho1	scf7180000778226:43629-43780 +		-------------------CTGATCGGCGAGAAGACCAAGCTGGACGAGGCGCAGATCGTG---------------AAGAAGGCCTACGGGGAGAACGGGGAGGCCAAGGATGGTGCCGGCCA---GCAGCCCCTGCTCAATGGGAATGGAGC---GGCCAGTGGCGGGGCCAAGGATGCACCCGAGGGAGG
droFic1	scf7180000454066:2087837-2087993 -		-----------ACTCTCCTCTGATTGGCGAGAAAACCAAACTGGATGAGGCGCAGATTGTA---------------AAGAAGCCTTAT---GAAAACGGAGATTCAAAGGATCCGGCTAACCA---GCAGCCGCTTCTCAATGGCAATGGCTC---GGCAAACGGAGCTGGTAAGGATGCTCCCGAGGGAGG
droKik1	scf7180000302471:1305998-1306154 +		-----------ACTCTCCGCTGATTGGGGAGAAGACCAAGCTGGACGAGGCCCAGATCGTA---------------AAGAAGCCCTAC---GAGAATGGCGACGCCAAGGACGGAGCCAACCA---GCAGCCGCTGCTCAATGGCAACGGATC---GGCCAATGGCGGTGCCAAGGATGGCTCCGCTCCCGG
droAna3	scaffold_13266:2201606-2201759 -		--------------CGCCGCTGATTGGCGAGAAGACCAAGCTGGACGAGGCGCAGATCGTG---------------AAGAAGCCCTAC---GAGAACGGAGATGCCAAGGACGGAGCTGGTCA---GCAGCCACTGCTGAACGGCAATGGATC---GGCCAACGGTGGCGCCAAGGATGCTCCCGAAATAAA
droBip1	scf7180000396384:379337-379490 +		--------------CGCCGCTGATCGGCGAGAAGACCAAGCTGGACGAGGCCCAGATCGTG---------------AAGAAGCCCTAC---GAGAACGGCGATTCCAAGGACGGAGCTGGTCA---GCAGCCATTGCTGAACGGCAATGGATC---GGCCAACGGCGGCGCCAAGGATGCTCCGGAAGTAAA
dp5	3:14948746-14948899 +		--------------CACCGCTCATCGGGGAGAAGACCAAGCTGGACGAGGCGCAGATAGTC---------------AAAAAGCCATAC---GACAACGGCGACGCCAAGGACGGAGCCAATCA---ACAGCCGCTTCTTAACGGCAACGGCTC---GGCCAACGGAGCCGCCAAGGAGGTGCCCAGCATCAA
droPer2	scaffold_4:4102786-4102939 -		--------------CACCGCTCATCGGGGAGAAGACCAAGCTGGACGAGGCGCAGATAGTC---------------AAAAAGCCGTAC---GACAACGGCGACGCCAAGGACGGAGCCAATCA---ACAGCCGCTTCTTAACGGCAACGGCTC---GGCCAACGGAGCCGCCAAGGAGGTGCCCAGCATCAA
droWil2	scf2_1100000004510:219913-220095 +		TGGCCAGGAGCGTTCTCCTCTGATTGGAGAGAAGACCAAACTGGATGAGGCGCAGATAGTCAATGGCAACGGCACCAAGAAACCCTAC---GACAACAATGAAGTCAAGGATGCGGCCAGCCAACAGCAACCCCTGCTTAATGGCAACGGTTCGCCGGCCAATGG------CAAGGATGTGCCCACCATCAA
droVir3	scaffold_10324:683048-683207 -		-----------ACTCACCCTTGATAGGTGAGAAGACCAAGCTGGACGAGGCACAGATTGTGAACGGCAACGG---CAAGAAGCCGTAC---GATA---------GCAAGGATGGGGCTGGGCA---GCAGCCGCTGCTGAATGGCAACGGCAC---TGCCAACGGCGATGCCAAGGAGGTGCCCACCATCAA
droMoj3	scaffold_6496:2522437-2522593 -		--------------CGCCATTGATTGGCGAGAAGACGAAGCTGGATGAGGCACAGATTGTGAATGGATCGGG---CAAGAAGCCGTAC---GATA---------GCAAAGACGGTGCTGGACA---GCAGCCGCTGCTCAATGGCAATGGAAC---AGCCAATGGAGATGCCAAGGAGGTGCCGACCATCAA
droGri2	scaffold_15245:8397439-8397595 -		--------------CGCCGCTCATTGGAGAGAAGGGCAAGGTGGATGATGCCCAGATTATCAATGGCGCCGG---GAAGAAGCCCTAC---GATA---------GCAAGGACAACGCTGGGCA---ACAGCCACTACTTAATGGCAACGGTGC---AGCCAATGGCGATGGCAAGGAGGTGCCCAAAATTGT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TAA--------ACTCTCCACTGATCGGAGAGAAGACCAAGTTGGACGAGGCACAGATTGTC---------------AAGAAGCCCTAC---GAGAACGGCGAGGCCAAGGACGGGGCTGGTCA---GCAGCCCCTGCTGAATGGCAACGGTTC---TGCCAATGGGGGTGCCAAGGAGGCACCCGAAAGCGG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
............................GAGAAGACCAAGTTGGACGA................................................................................................................................................	20	1	3.00	3	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GAGAAGACCAAGTTGGAC..................................................................................................................................................	18	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GAGAAGACCAAGTTGGACGAGGCA............................................................................................................................................	24	1	2.00	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
..........................................................................................................................................GAATGGCAACGGTTC---TGCCAATGGGGGT.......................	28	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................CAAGTTGGACGAGGCACA..........................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................GAAGACCAAGTTGGACGAGGC.............................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................AGACCAAGTTGGACGAGGCA............................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................AAGAAGCCCTAC---GAGAACGGCGAGGCCAA....................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................AACGGTTC---TGCCAATGGGGGTGCC....................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................AACGGTTC---TGCCAATGGGGGTGC.....................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................GCCCTAC---GAGAACGGCGAGGC.......................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................AGAGAAGACCAAGTTGGACGAGGCAC...........................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................CAAGTTGGACGAGGCACAGATT......................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................AACGGCGAGGCCAAGGACGG..............................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................GGCACAGATTGTC---------------AAGAAGCC............................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................GATCGGAGAGAAGACCAAGTTGGACGA................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................GTTC---TGCCAATGGGGGTGCC....................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................CAAGGACGGGGCTGGTCA---GC................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................GTTGGACGAGGCACAGATT......................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CCACTGATCGGAGAGAAGACCAA.........................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................CAACGGTTC---TGCCAATGGGGGTGC.....................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................TAC---GAGAACGGCGAGGCC......................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
......................................................................................................GGCCAAGGACGGGGCTGGTCA---GCAGC.............................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CACAGATTGTC---------------AAGAAGCC............................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CGGAGAGAAGACCAAGTTGGACGA................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CCACTGATCGGAGAGAAGACC...........................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................GGCCAAGGACGGGGCTGGTCA---GC................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GAGAAGACCAAGTTGGACGAG...............................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................GCCCTAC---GAGAACGGCGAGGCCAAGGACG...............................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................AGCCCCTGCTGAATGGCAACG...........................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GGCAACGGTTC---TGCCAATGGGG.........................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................GAACGGCGAGGCCAAGGAC................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................ACAGATTGTC---------------AAGAAGCC............................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................GAGAACGGCGAGGCCAAGGACGGGGC...........................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

-----------ACTCTCCACTGATCGGAGAGAAGACCAAGTTGGACGAGGCACAGATTGTC---------------AAGAAGCCCTAC---GAGAACGGCGAGGCCAAGGACGGGGCTGGTCA-CAACAGCCCCTGCTGAATGGCAACGGTTC---TGCCAATGGGGGTG----------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
................................................................................................................................................CAACGGTTC---TGCCAATGGGG.........................	20	1	3.00	3	0	0	3	0
..............................................................................................................................................GGCAACGGTTC---TGCCAATGGGGGT.......................	24	1	1.00	1	0	0	1	0
..........................................................................................................................................GAATGGCAACGGTTC---TGCCAATGGGGGT.......................	28	1	1.00	1	0	0	1	0
.............................................................................................GAACGGCGAGGCCAAGGACGGG.............................................................................	22	2	1.00	2	0	1	1	0
................................................................................................................................AGCCCCTGCTGAATGGCAAC............................................	20	1	1.00	1	0	0	1	0
...............................................................................................ACGGCGAGGCCAAGGACGGGGCTG.........................................................................	24	2	0.50	1	0	0	1	0
................................................GGCACAGATTGTC---------------AAGAAGCC............................................................................................................	21	2	0.50	1	0	0	1	0
................................AGACCAAGTTGGACGAGGCACA..........................................................................................................................................	22	2	0.50	1	0	0	1	0
.............................AGAAGACCAAGTTGGACGAGGC.............................................................................................................................................	22	2	0.50	1	0	1	0	0
............................GAGAAGACCAAGTTGGACGAGGC.............................................................................................................................................	23	2	0.50	1	0	0	1	0
.............................................................................................GAACGGCGAGGCCAAGGACG...............................................................................	20	2	0.50	1	0	0	1	0
............................GAGAAGACCAAGTTGGACGAGG..............................................................................................................................................	22	2	0.50	1	0	0	1	0
......................................................................................................GGCCAAGGACGGGGCTGGTC......................................................................	20	2	0.50	1	0	0	1	0
............................................................................................AGAACGGCGAGGCCAAGGACGG..............................................................................	22	2	0.50	1	0	0	1	0
..........................................................GTC---------------AAGAAGCCCTAC---GAGAACGGCG...........................................................................................	25	2	0.50	1	0	1	0	0
..................................................CACAGATTGTC---------------AAGAAGCC............................................................................................................	19	2	0.50	1	0	0	1	0
...............................................................................................ACGGCGAGGCCAAGGACGGG.............................................................................	20	2	0.50	1	0	0	1	0
.............................................CGAGGCACAGATTGTC---------------AAGA................................................................................................................	20	2	0.50	1	0	0	1	0
.............................................................................................GAACGGCGAGGCCAAGGACGGGGC...........................................................................	24	2	0.50	1	1	0	0	0
.............................................................................................GAACGGCGAGGCCAAGGACGGGGCT..........................................................................	25	2	0.50	1	0	0	1	0
.............................................................................AGAAGCCCTAC---GAGAACGGC............................................................................................	20	2	0.50	1	0	0	1	0
....................................................................................CTAC---GAGAACGGCGAGGCCAAGGACGGG.............................................................................	28	2	0.50	1	0	1	0	0
................CCACTGATCGGAGAGAAGACCAA.........................................................................................................................................................	23	2	0.50	1	0	1	0	0
.............................AGAAGACCAAGTTGGACGAG...............................................................................................................................................	20	2	0.50	1	0	0	1	0

dm3

--------------CTCCACTGATCGGAGAGAAGACCAAATTGGACGAGGCACAGATTGTC---------------AAGAAGCCCTAC---GAGAACGGAGAGGCCAAGGACGGGGCTGGTCA---GCAGCCCCTGCTAAATGGCAACGGTTC---GGCCAATGGAGGTACCAAAGAGGCACCCGAAACCGG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................................................GGCACAGATTGTC---------------AAGAAGC.............................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................AGCCCTAC---GAGAACGGAGAGGC.......................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................CAACGGTTC---GGCCAATGGAG.........................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................AACGGTTC---GGCCAATGGAGGTACCA...................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................AATGGAGGTACCAAAGAGGC............	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0
.......................................................ATTGTC---------------AAGAAGCCCTAC---GAGAACGGAG...........................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................ACAGATTGTC---------------AAGAAGCCCT..........................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................CTAC---GAGAACGGAGAGGCC......................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........................................................................................................AAGGACGGGGCTGGTCA---GCAG..............................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................CCCTAC---GAGAACGGAGAGG........................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................CTAC---GAGAACGGAGAGGCCAAGG..................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................CGGTTC---GGCCAATGGAG.........................	17	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................GACCAAATTGGACGAGGC.............................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................ATTGGACGAGGCACAGG........................................................................................................................................	17	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

--------------CTCCACTGATCGGAGAGAAGACCAAGCTGGACGAGGCGCAGATTGTG---------------AAGAAGCCCTAC---GAGAACGGCGACGCCAAGGACGGCGCTGGTCA---GCAGCCCCTGCTGAATGGCAACGGTTC---GGCCAATGGAGGTGCCAAGGAGGCACCCGAAGCCGG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.................................................................................................................................................AACGGTTC---GGCCAATGGAGGT.......................	21	1	7.00	7	0	0	0	0	7	0	0
......................................................................................................CGCCAAGGACGGCGCTGGTCA---GC................................................................	23	1	5.00	5	0	2	0	0	0	3	0
...............................................................................................................................................GCAACGGTTC---GGCCAATGGAGGT.......................	23	1	4.00	4	0	0	0	0	2	2	0
............................GAGAAGACCAAGCTGGACGAGG..............................................................................................................................................	22	1	4.00	4	1	0	0	0	2	1	0
............................GAGAAGACCAAGCTGGACGAGGC.............................................................................................................................................	23	1	3.00	3	1	0	0	0	2	0	0
..............................................................................................AACGGCGACGCCAAGGACGGCGCT..........................................................................	24	1	2.00	2	0	0	0	0	2	0	0
.................................................GCGCAGATTGTG---------------AAGAAG..............................................................................................................	18	1	2.00	2	0	0	0	1	1	0	0
.....................................................................................................................................................GTTC---GGCCAATGGAGGTGC.....................	19	1	2.00	2	2	0	0	0	0	0	0
................................................................................................................................AGCCCCTGCTGAATGGCAACGGTT........................................	24	1	2.00	2	2	0	0	0	0	0	0
............................GAGAAGACCAAGCTGGACGAGGCGC...........................................................................................................................................	25	1	2.00	2	0	0	0	1	1	0	0
................................................................................................................................................CAACGGTTC---GGCCAATGGAGG........................	21	1	2.00	2	2	0	0	0	0	0	0
...........................................................................................................................................................................CAAGGAGGCACCCGAAGCC..	19	1	2.00	2	0	0	0	0	0	2	0
.............................AGAAGACCAAGCTGGACGAGG..............................................................................................................................................	21	1	2.00	2	0	1	0	0	1	0	0
...............................................................................................ACGGCGACGCCAAGGACGGC.............................................................................	20	1	2.00	2	0	0	0	0	1	1	0
.........................................................................................................CAAGGACGGCGCTGGTCA---GC................................................................	20	1	2.00	2	0	0	0	1	1	0	0
.....................................................................................................................................................GTTC---GGCCAATGGAGGTGCCAAGGAGG.............	27	1	2.00	2	0	0	0	0	2	0	0
..............................................................................................................................................GGCAACGGTTC---GGCCAATGGAGGT.......................	24	1	2.00	2	0	0	0	0	2	0	0
..........................................................GTG---------------AAGAAGCCCTAC---GAGAAC...............................................................................................	21	1	2.00	2	0	0	0	0	2	0	0
..................................................CGCAGATTGTG---------------AAGAAGCCCTAC---GA...................................................................................................	25	1	2.00	2	0	0	0	0	2	0	0
...............................................AGGCGCAGATTGTG---------------AAGAAGC.............................................................................................................	21	1	2.00	2	0	0	0	0	1	1	0
...............................................AGGCGCAGATTGTG---------------AAGAA...............................................................................................................	19	1	2.00	2	1	0	0	0	1	0	0
.................................GACCAAGCTGGACGAGGCGCAGAT.......................................................................................................................................	24	1	2.00	2	1	0	0	0	1	0	0
...................................................................................................CGACGCCAAGGACGGCGCTGGTCA---GC................................................................	26	1	2.00	2	2	0	0	0	0	0	0
..................ACTGATCGGAGAGAAGACCAAGC.......................................................................................................................................................	23	1	2.00	2	0	0	0	0	2	0	0
........................................................................................................................................................................TGCCAAGGAGGCACCCGAAGC...	21	1	1.00	1	0	1	0	0	0	0	0
......................................................................................................................................................TTC---GGCCAATGGAGGTGCCAAGGAGGC............	27	1	1.00	1	1	0	0	0	0	0	0
..................................................CGCAGATTGTG---------------AAGAAGCCCTAC---.....................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
......................................................................................................CGCCAAGGACGGCGCTGGTC......................................................................	20	1	1.00	1	1	0	0	0	0	0	0
..................................................CGCAGATTGTG---------------AAGAAGCC............................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0
..............................GAAGACCAAGCTGGACGAGGC.............................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
............................GAGAAGACCAAGCTGGACGAG...............................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
........................CGGAGAGAAGACCAAGCTGGACG.................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0
................................................GGCGCAGATTGTG---------------AAGAAGCC............................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
...............................................AGGCGCAGATTGTG---------------AAGA................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0
...............................AAGACCAAGCTGGACGAGGC.............................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
..................................................CGCAGATTGTG---------------AAGAAGCCCTAC---GAGAAC...............................................................................................	29	1	1.00	1	0	1	0	0	0	0	0
.......................................GCTGGACGAGGCGCAGAT.......................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................CAACGGTTC---GGCCAATGGAGGTGC.....................	24	1	1.00	1	0	1	0	0	0	0	0
.......................................GCTGGACGAGGCGCAGATTGT....................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.................CACTGATCGGAGAGAAGAC............................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
.................................GACCAAGCTGGACGAGGCGCAG.........................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
............................................................................................AGAACGGCGACGCCAAGGACGG..............................................................................	22	1	1.00	1	1	0	0	0	0	0	0
....................................................................................CTAC---GAGAACGGCGACGCCAAG...................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................................................GTTC---GGCCAATGGAGGTGCCAAGGAGGC............	28	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................AAGGACGGCGCTGGTCA---GCAGCCCC..........................................................	25	1	1.00	1	0	1	0	0	0	0	0
..................................ACCAAGCTGGACGAGGCGCAG.........................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.............................................................................AGAAGCCCTAC---GAGAACGG.............................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
............................................................................................................................................ATGGCAACGGTTC---GGCCAATGGAGG........................	25	1	1.00	1	0	0	0	0	1	0	0
..............................................GAGGCGCAGATTGTG---------------AAGA................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0
...........................................................................................................................................................................CAAGGAGGCACCCGAAGC...	18	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................AGCCCCTGCTGAATGGCAAC............................................	20	1	1.00	1	0	0	0	0	0	1	0
..........................................................................................................................................GAATGGCAACGGTTC---GGCCAATGGAGGT.......................	28	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................AACGGTTC---GGCCAATGGAGGTGC.....................	23	1	1.00	1	0	1	0	0	0	0	0
.................................GACCAAGCTGGACGAGGCGC...........................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
................CCACTGATCGGAGAGAAGAC............................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
............................................................................................AGAACGGCGACGCCAAGGACG...............................................................................	21	1	1.00	1	1	0	0	0	0	0	0
........................................CTGGACGAGGCGCAGATTGTG---------------AAGA................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
..........................................................GTG---------------AAGAAGCCCTAC---GAGAACGGC............................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................GAACGGCGACGCCAAGGAC................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
............................................................G---------------AAGAAGCCCTAC---GAGAACGGC............................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
..................................................CGCAGATTGTG---------------AAGAAGCCCT..........................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0
................................................................................................................................................................AATGGAGGTGCCAAGGAGG.............	19	1	1.00	1	0	0	0	0	1	0	0
................CCACTGATCGGAGAGAAGACCAA.........................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................CAACGGTTC---GGCCAATGGAGGTG......................	23	1	1.00	1	1	0	0	0	0	0	0
......................................................................................AC---GAGAACGGCGACGCCAAGGACGGC.............................................................................	26	1	1.00	1	0	0	0	0	0	0	1
....................................................................................................GACGCCAAGGACGGCGCTGGTCA---GC................................................................	25	1	1.00	1	1	0	0	0	0	0	0
..........................GAGAGAAGACCAAGCTGGACGAGGC.............................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0
....................................CAAGCTGGACGAGGCGCAGA........................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
.................................................................................................................................................AACGGTTC---GGCCAATGGAG.........................	19	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................AACGGTTC---GGCCAATGGAGG........................	20	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................GCCAAGGACGGCGCTGGTCA---GC................................................................	22	1	1.00	1	1	0	0	0	0	0	0
........................................CTGGACGAGGCGCAGATTGT....................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................GAATGGCAACGGTTC---GGC.................................	18	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................ACGCCAAGGACGGCGCTGGTCA---GC................................................................	24	1	1.00	1	0	0	0	0	0	1	0
............................................................G---------------AAGAAGCCCTAC---GAGAACGG.............................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
.........................................................TGTG---------------AAGAAGCCCTAC---GAGA.................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
.......................................................................................................................................................................GTGCCAAGGAGGCACCCGAAGC...	22	1	1.00	1	1	0	0	0	0	0	0
.........................................TGGACGAGGCGCAGATTGT....................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0
..........................................................................................................AAGGACGGCGCTGGTCA---GC................................................................	19	1	1.00	1	0	0	0	1	0	0	0
................................................GGCGCAGATTGTG---------------AAGAAGC.............................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
......................................................................................................CGCCAAGGACGGCGCTGGTCA---..................................................................	21	1	1.00	1	1	0	0	0	0	0	0
..............................GAAGACCAAGCTGGACGAGGCGCAGATT......................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0
.................................................GCGCAGATTGTG---------------AAGAAGCCCTAC---GA...................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................ATGGCAACGGTTC---GGCCAATGGAGGTG......................	27	1	1.00	1	1	0	0	0	0	0	0
................................AGACCAAGCTGGACGAGGC.............................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
............................................................................................................................................................GGCCAATGGAGGTGCCAAGGAGG.............	23	1	1.00	1	1	0	0	0	0	0	0
...........................AGAGAAGACCAAGCTGGACGAGG..............................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................GAGAACGGCGACGCCAAGGACGG..............................................................................	23	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................................................................ACGGTTC---GGCCAATGGAGG........................	19	1	1.00	1	0	0	0	1	0	0	0
.......................................................ATTGTG---------------AAGAAGCCCTAC---GAGAACG..............................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................................GGTTC---GGCCAATGGAGGTGC.....................	20	1	1.00	1	0	1	0	0	0	0	0

droYak3

--------------CGCCACTGATCGGTGAGAAGACCAAACTGGACGAGGCACAGATTGTG---------------AAGAAGCCCTAC---GAGAACGGTGACGCCAAGGACGGGGCTGGTCA---GCAGCCCCTGCTCAATGGCAACGGGTC---GGCCAATGGAGGTGCCAAGGAGGCACCCGAAAGCGG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...........................................................................................................................................................................CAAGGAGGCACCCGAAAGC..	19	1	4.00	4	0	1	2	0	0	0	1	0	0	0	0
.............................AGAAGACCAAACTGGACGAG...............................................................................................................................................	20	1	4.00	4	0	0	0	0	0	1	3	0	0	0	0
...............................................................................................................................................GCAACGGGTC---GGCCAATGGAGGT.......................	23	1	4.00	4	0	0	1	0	0	0	3	0	0	0	0
............................................................................................................................................ATGGCAACGGGTC---GGCCAATGGAGGT.......................	26	1	3.00	3	0	1	0	0	0	0	2	0	0	0	0
..........................................................GTG---------------AAGAAGCCCTAC---GAGAACGGTGA..........................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3
................................................................................................................................................CAACGGGTC---GGCCAATGGAGGTGC.....................	24	1	3.00	3	0	1	1	0	0	0	1	0	0	0	0
.................................................................................................................................................AACGGGTC---GGCCAATGGAGGT.......................	21	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
.......................................................................................................................................GCTCAATGGCAACGGGTC---GGC.................................	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
................................................................................................................................................CAACGGGTC---GGCCAATGGAGGT.......................	22	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
............................GAGAAGACCAAACTGGACGAGGC.............................................................................................................................................	23	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
..............................................................................................................................................GGCAACGGGTC---GGCCAATGGAGGTGC.....................	26	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
..............................GAAGACCAAACTGGACGAGGC.............................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................GCCAAGGAGGCACCCGAAAGCGG	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.....................................AAACTGGACGAGGCACAGATTGTG---------------....................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................GTG---------------AAGAAGCCCTAC---GAGAACG..............................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................ACGCCAAGGACGGGGCTGGTCA---GCA...............................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................TTGTG---------------AAGAAGCCCTAC---GAGAACGGT............................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................AGAAGACCAAACTGGACGA................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................GACCAAACTGGACGAGGCACA..........................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................AAGCCCTAC---GAGAACGGTGACGC.......................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................GTGACGCCAAGGACGGGGCTG.........................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................GGCACAGATTGTG---------------AAGAAGC.............................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................TGGCAACGGGTC---GGCCAATGGAGGT.......................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................G---------------AAGAAGCCCTAC---GAGAACGGTGACGC.......................................................................................	27	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.............................AGAAGACCAAACTGGACGAGGC.............................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................CTGCTCAATGGCAACGGGTC---GG..................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................AC---GAGAACGGTGACGCCAAG...................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................TGCCAAGGAGGCACCCGAAAGC..	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................GGTGACGCCAAGGACGGG.............................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................CAAACTGGACGAGGCACAGATTGT....................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................AGAAGACCAAACTGGACGG................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................GACGCCAAGGACGGGGCTGGT.......................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................GTGACGCCAAGGACGGGG............................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
..............................................GAGGCACAGATTGTG---------------AAGA................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................TCA---GCAGCCCCTGCTCAATGG................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................TAC---GAGAACGGTGACGCCAAGGACGGG.............................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................CAACGGGTC---GGCCAATGGAGG........................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................GGACGAGGCACAGATTGT....................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................GACCAAACTGGACGAGGC.............................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GGCAACGGGTC---GGCCAATGGAGGT.......................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................CTAC---GAGAACGGTGACGCCAAGGA.................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................GACGCCAAGGACGGGGCT..........................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................GAAGACCAAACTGGACGAGGCACAGA........................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............CGCCACTGATCGGTGAGAAGAC............................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................CACAGATTGTG---------------AAGAAGCCCTAC---GAG..................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................GGGTC---GGCCAATGGAGGT.......................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................ACGGTGACGCCAAGGACGGGGCTGGTC......................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................................................G---------------AAGAAGCCCTAC---GAGAACGGTGACGCC......................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................AGCCCTAC---GAGAACGGTGACGCC......................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................GTCA---GCAGCCCCTGCTCAATGGC...............................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................AAGAAGCCCTAC---GAGAACGGTGA..........................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................ACGGTGACGCCAAGGACGGG.............................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............CGCCACTGATCGGTGAGAAGACCAAA........................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................TC---GGCCAATGGAGGTGCCAAGGAGG.............	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................G---------------AAGAAGCCCTAC---GAGAACGGT............................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................AACGGGTC---GGCCAATGGAGG........................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................AACGGTGACGCCAAGGACGG..............................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................GAACGGTGACGCCAAGGACGGGG............................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................GTC---GGCCAATGGAGGTGCC....................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................AACGGGTC---GGCCAATGGAG.........................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................GAAGCCCTAC---GAGAACGGTGACGCCAA....................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................GAACGGTGACGCCAAGGACGGGGC...........................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................GCTCAATGGCAACGGGTC---GGCC................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................CTAC---GAGAACGGTGACGCCAAGGACGG..............................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................GCTGGTCA---GCAGCCCCTGCTCAATGG................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................CAACGGGTC---GGCCAATGGAGGTGCC....................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GGCAACGGGTC---GGCCAATGGAGGTG......................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................GGCCAATGGAGGTGCCAAGGAGGCA...........	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................GTG---------------AAGAAGCCCTAC---GAGAACGGTG...........................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................GCCCCTGCTCAATGGCAACGG..........................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GGCAACGGGTC---GGCCAATGGAG.........................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................CAAACTGGACGAGGCACAGATT......................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................GTCA---GCAGCCCCTGCTCAAT..................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................CCTAC---GAGAACGGTGACGCCAAG...................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................GCAACGGGTC---GGCCAATGGAGGTGC.....................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................CCAAACTGGACGAGGCACAGA........................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................GCACAGATTGTG---------------AAGAAGCC............................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................GCCCTAC---GAGAACGGTGACGCC......................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............CGCCACTGATCGGTGAGAAGACCAAACTGGA...................................................................................................................................................	31	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1
....................................................................................CTAC---GAGAACGGTGACGCC......................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................GGGTC---GGCCAATGGAGGTGCC....................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................................................ACAGATTGTG---------------AAGAAGCCCTAC---GAGAACG..............................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................AACGGGTC---GGCCAATGGAGGTGC.....................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................GAACGGTGACGCCAAGGACGGG.............................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................C---GAGAACGGTGACGCCAAGGAC................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................C---GGCCAATGGAGGTGCCAAGGAGGC............	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...............GCCACTGATCGGTGAGAAGACCAAACT......................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................C---GAGAACGGTGACGCCAAGGACGGG.............................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................GCCAAGGAGGCACCCGAAAGCG.	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................AGCCCTAC---GAGAACGGTGACGCCAAG...................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................GGCCAATGGAGGTGCCAAGGAGGC............	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................GAGAAGACCAAACTGGACGAGGCACAG.........................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................GAGAAGACCAAACTGGACGG................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................GGTC---GGCCAATGGAGGTGC.....................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEug1

--------------CTCCTCTGATCGGTGAGAAGACCAAGCTGGATGAGGCACAGATTGTT---------------AAGAAGCCCTAC---GAGAACGGAGAGACCAAGGACGGAGCTGGCCA---GCAGCCCCTGCTCAATGGCAATGGCTC---TGCCAATGGAGGTGCCAAGGATGCCCCCGAAAGCGA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

--------------CGCCGCTGATCGGCGAGAAGACCAAGCTGGACGAGGCTCAGATCGTG---------------AAGAAGCCGTAC---GAGAACGGAGAGACCAAGGACGGAGCTGGCCA---GCAGCCGCTGCTCAATGGCAACGGAAC---GGCTAACGGAGGCGCCAAGGAGGCCCCAGAAGGCGA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

-----------ACTCCCCCCTGATTGGTGAGAAGACCAAGCTGGACGAGGCCCAGATTGTA---------------AAGAAGCCGTATCCCGAGAACGGAGATACCAAGGATGCAGCTAACCA---GCAGCCGCTGCTCAATGGCAACGGATC---GGCGAATGGAGCTGCCAAGGAG--------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

-----------ACTCGCCGCTGATCGGCGAGAAGACCAAACTGGACGACGCTCAGATCGTG---------------AAGAAGGCCTACGGTGAGAGCGCCGAGGCCAAGGACGGCGCTGGCCA---GCAGCCGCTGCTCAATGGCAATGGGTC---GGCCAATGGCAATGCCAAGGAGGCCACCGAAGGCAA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

-------------------CTGATCGGCGAGAAGACCAAGCTGGACGAGGCGCAGATCGTG---------------AAGAAGGCCTACGGGGAGAACGGGGAGGCCAAGGATGGTGCCGGCCA---GCAGCCCCTGCTCAATGGGAATGGAGC---GGCCAGTGGCGGGGCCAAGGATGCACCCGAGGGAGG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

-----------ACTCTCCTCTGATTGGCGAGAAAACCAAACTGGATGAGGCGCAGATTGTA---------------AAGAAGCCTTAT---GAAAACGGAGATTCAAAGGATCCGGCTAACCA---GCAGCCGCTTCTCAATGGCAATGGCTC---GGCAAACGGAGCTGGTAAGGATGCTCCCGAGGGAGG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

-----------ACTCTCCGCTGATTGGGGAGAAGACCAAGCTGGACGAGGCCCAGATCGTA---------------AAGAAGCCCTAC---GAGAATGGCGACGCCAAGGACGGAGCCAACCA---GCAGCCGCTGCTCAATGGCAACGGATC---GGCCAATGGCGGTGCCAAGGATGGCTCCGCTCCCGG	Size	Hit Count	Total Norm	Total
No Reads

droAna3

--------------CGCCGCTGATTGGCGAGAAGACCAAGCTGGACGAGGCGCAGATCGTG---------------AAGAAGCCCTAC---GAGAACGGAGATGCCAAGGACGGAGCTGGTCA---GCAGCCACTGCTGAACGGCAATGGATC---GGCCAACGGTGGCGCCAAGGATGCTCCCGAAATAAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..............................................................................................................................................GGCAATGGATC---GGCCAACGGTGG........................	23	1	9.00	9	3	1	0	0	5	0
..............................................................................................................................................GGCAATGGATC---GGCCAACGGTGGC.......................	24	1	8.00	8	1	0	1	0	4	2
.......................................................................................................GCCAAGGACGGAGCTGGTCA---GC................................................................	22	1	6.00	6	1	2	0	0	3	0
....................................................................................................GATGCCAAGGACGGAGCTGGTCA---GC................................................................	25	1	6.00	6	2	0	0	0	3	1
............................GAGAAGACCAAGCTGGACGAGGC.............................................................................................................................................	23	1	5.00	5	1	1	0	0	2	1
.........................................................................................................CAAGGACGGAGCTGGTCA---GC................................................................	20	1	4.00	4	2	1	0	0	1	0
..............................................................................................................................................GGCAATGGATC---GGCCAACGGTG.........................	22	1	4.00	4	1	1	1	0	1	0
....................................................................................................GATGCCAAGGACGGAGCTGGTC......................................................................	22	1	4.00	4	0	2	0	0	2	0
...................................................................................................AGATGCCAAGGACGGAGCTGGTCA---GC................................................................	26	1	3.00	3	0	1	0	0	1	1
..................................................................................................GAGATGCCAAGGACGGAGCTGGTCA---GC................................................................	27	1	3.00	3	1	0	0	0	2	0
.................................................................................................................................................AATGGATC---GGCCAACGGTGGC.......................	21	1	3.00	3	0	2	0	0	0	1
................................AGACCAAGCTGGACGAGGCGCA..........................................................................................................................................	22	1	3.00	3	1	2	0	0	0	0
......................................................................................................TGCCAAGGACGGAGCTGGTCA---GC................................................................	23	1	2.00	2	1	0	0	0	1	0
....................................CAAGCTGGACGAGGCGCAGATCGT....................................................................................................................................	24	1	2.00	2	1	1	0	0	0	0
.....................................................................................................ATGCCAAGGACGGAGCTGGTCA---GC................................................................	24	1	2.00	2	0	0	0	0	2	0
..................................................CGCAGATCGTG---------------AAGAAGCCCTAC---GA...................................................................................................	25	1	2.00	2	0	0	0	0	1	1
.....................................AAGCTGGACGAGGCGCAGATCGT....................................................................................................................................	23	1	2.00	2	0	0	0	0	0	2
.......................................................................................................GCCAAGGACGGAGCTGGTC......................................................................	19	1	2.00	2	1	0	0	0	0	1
.................................GACCAAGCTGGACGAGGCGCAGATCGT....................................................................................................................................	27	1	2.00	2	1	0	0	0	1	0
............................GAGAAGACCAAGCTGGACGAGG..............................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
..................GCTGATTGGCGAGAAGACCAA.........................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
............................GAGAAGACCAAGCTGGACG.................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
................................................................................................CGGAGATGCCAAGGACGGAGCTGGTC......................................................................	26	1	1.00	1	0	1	0	0	0	0
......................................................GATCGTG---------------AAGAAGCCCTA.........................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.............................................................................................................GACGGAGCTGGTCA---GCAGCC............................................................	20	1	1.00	1	0	1	0	0	0	0
................................................................................AGCCCTAC---GAGAACGGAGA..........................................................................................	19	1	1.00	1	0	1	0	0	0	0
..................................ACCAAGCTGGACGAGGCGCAGATCGTG---------------....................................................................................................................	27	1	1.00	1	0	0	0	0	1	0
..........................................................................................................AAGGACGGAGCTGGTCA---GC................................................................	19	1	1.00	1	0	1	0	0	0	0
.................................................................................................GGAGATGCCAAGGACGGAGCTGGTCA---GC................................................................	28	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................CGGCAATGGATC---GGCCAACGGT..........................	22	1	1.00	1	0	0	1	0	0	0
.............................................................................................GAACGGAGATGCCAAGGACG...............................................................................	20	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................C---GGCCAACGGTGGCGCCAAGGA...............	22	1	1.00	1	0	1	0	0	0	0
..............................GAAGACCAAGCTGGACGAGGCG............................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
............................GAGAAGACCAAGCTGGACGAGGA.............................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
.............................................................................................................GACGGAGCTGGTCA---GCAGCCACTGCTGAAC..................................................	30	1	1.00	1	0	0	0	0	1	0
......................................................................................................TGCCAAGGACGGAGCTGGTCA---G.................................................................	22	1	1.00	1	1	0	0	0	0	0
..............................................................................................AACGGAGATGCCAAGGACGGAGCTGGT.......................................................................	27	1	1.00	1	1	0	0	0	0	0
................................................................................................................................AGCCACTGCTGAACGGCAATGGATC---GGCC................................	29	1	1.00	1	0	1	0	0	0	0
.................................GACCAAGCTGGACGAGGCGC...........................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................CA---GCAGCCACTGCTGAACGGCAATGGATC---....................................	29	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................GGCAATGGATC---GGCCAACGGTGT........................	23	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................GGCAATGGATC---GGCCAACGGTGGCGC.....................	26	1	1.00	1	0	0	1	0	0	0
............................................................................................................................................ACGGCAATGGATC---GGCCAACGGT..........................	23	1	1.00	1	0	0	0	0	1	0
..........................GCGAGAAGACCAAGCTGGACGAGGC.............................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
......................................................................................................................................................................GGCGCCAAGGATGCTCCCGAAAT...	23	1	1.00	1	0	1	0	0	0	0
.........................GGCGAGAAGACCAAGCTGGAC..................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
......................................................................................AC---GAGAACGGAGATGCCA.....................................................................................	18	1	1.00	1	0	0	0	0	1	0
.........................................................................................................................................TGAACGGCAATGGATC---GGCCAACGGTG.........................	27	1	1.00	1	1	0	0	0	0	0
.........................GGCGAGAAGACCAAGCTGGACGA................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...................................................................................................AGATGCCAAGGACGGAGCT..........................................................................	19	1	1.00	1	0	1	0	0	0	0
....................................................................................................GATGCCAAGGACGGAGCTGGTCA---..................................................................	23	1	1.00	1	0	0	0	0	1	0
.............................................................................................GAACGGAGATGCCAAGGAC................................................................................	19	1	1.00	1	0	1	0	0	0	0
.............................................................................................GAACGGAGATGCCAAGGA.................................................................................	18	1	1.00	1	0	1	0	0	0	0
.....................................AAGCTGGACGAGGCGCAGATCGTG---------------A...................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................................GAACGGCAATGGATC---GGCCAACGGT..........................	25	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................GCAATGGATC---GGCCAACGGTGGCGCCA...................	27	1	1.00	1	0	0	0	0	1	0
............................................................G---------------AAGAAGCCCTAC---GAGAACGGAG...........................................................................................	23	1	1.00	1	0	0	0	0	1	0
..........................................GGACGAGGCGCAGATCGTG---------------AAGAAGC.............................................................................................................	26	1	1.00	1	0	0	0	0	1	0
..................................................CGCAGATCGTG---------------AAGAAGCCCTAC---G....................................................................................................	24	1	1.00	1	0	0	0	0	1	0
............................................................................................................GGACGGAGCTGGTCA---GCA...............................................................	18	1	1.00	1	1	0	0	0	0	0
...........................................GACGAGGCGCAGATCGTG---------------AA..................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................................................CGCCAAGGATGCTCCCGAAAT...	21	1	1.00	1	0	1	0	0	0	0
..........................................GGACGAGGCGCAGATCGTG---------------AAGAA...............................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.........................................TGGACGAGGCGCAGATCGTG---------------AAGAA...............................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.......................................GCTGGACGAGGCGCAGATC......................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................ATGGATC---GGCCAACGGTGGC.......................	20	1	1.00	1	0	1	0	0	0	0
................................................................................................................GGAGCTGGTCA---GCAGCCACTGC.......................................................	22	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................GCAATGGATC---GGCCAACGGTGGCGCCAAG.................	29	1	1.00	1	0	0	0	0	1	0
....................................................................................................GATGCCAAGGACGGAGCTGGT.......................................................................	21	1	1.00	1	0	1	0	0	0	0
.........................GGCGAGAAGACCAAGCTGGACGAGGC.............................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
............................................................G---------------AAGAAGCCCTAC---GAGAACGGAGAT.........................................................................................	25	1	1.00	1	0	1	0	0	0	0
................................AGACCAAGCTGGACGAGGCG............................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
........................................................................................................CCAAGGACGGAGCTGGTCA---..................................................................	19	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................GCAGCCACTGCTGAACGGCAATGGATC---....................................	27	1	1.00	1	0	1	0	0	0	0
.............................................CGAGGCGCAGATCGTG---------------AAGAA...............................................................................................................	21	1	1.00	1	1	0	0	0	0	0
............................GAGAAGACCAAGCTGGACGAG...............................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
......................................................................................AC---GAGAACGGAGATGCCAAGG..................................................................................	21	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................A---GCAGCCACTGCTGAACGGC...............................................	20	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................GGATC---GGCCAACGGTGGCGCCAAGG................	25	1	1.00	1	1	0	0	0	0	0
......................................AGCTGGACGAGGCGCAGATCGC....................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................AATGGATC---GGCCAACGGT..........................	18	1	1.00	1	0	1	0	0	0	0
.................CGCTGATTGGCGAGAAGACCAAGCTG.....................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
..........................................GGACGAGGCGCAGATCGT....................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
....................................................................................................GATGCCAAGGACGGAGCT..........................................................................	18	1	1.00	1	0	0	0	0	0	1
...............................AAGACCAAGCTGGACGAGGC.............................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
................................................................................................CGGAGATGCCAAGGACGGAGCTGGT.......................................................................	25	1	1.00	1	0	0	0	0	1	0
.............................................................................................GAACGGAGATGCCAAGGACGGAGCC..........................................................................	25	1	1.00	1	0	1	0	0	0	0
...........................................GACGAGGCGCAGATCGTG---------------AAGAA...............................................................................................................	23	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................................GAACGGCAATGGATC---GGCCAACGGTGG........................	27	1	1.00	1	0	0	0	0	1	0
..................................................CGCAGATCGTG---------------AAGAAGCCCT..........................................................................................................	21	1	1.00	1	0	0	0	0	1	0
..................................................................................................GAGATGCCAAGGACGGAGCT..........................................................................	20	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................GGCAATGGATC---GGCCAACGGT..........................	21	1	1.00	1	0	0	0	0	1	0
.......................................................................................................GCCAAGGACGGAGCTGGT.......................................................................	18	1	1.00	1	1	0	0	0	0	0
.................................................................................................GGAGATGCCAAGGACGGAGCTGGTC......................................................................	25	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................CTGAACGGCAATGGATC---GGC.................................	20	1	1.00	1	0	1	0	0	0	0
...................................................GCAGATCGTG---------------AAGAAGCCCTAC---GA...................................................................................................	24	1	1.00	1	0	0	0	0	1	0

droBip1

--------------CGCCGCTGATCGGCGAGAAGACCAAGCTGGACGAGGCCCAGATCGTG---------------AAGAAGCCCTAC---GAGAACGGCGATTCCAAGGACGGAGCTGGTCA---GCAGCCATTGCTGAACGGCAATGGATC---GGCCAACGGCGGCGCCAAGGATGCTCCGGAAGTAAA	Size	Hit Count	Total Norm	Total
No Reads

dp5

--------------CACCGCTCATCGGGGAGAAGACCAAGCTGGACGAGGCGCAGATAGTC---------------AAAAAGCCATAC---GACAACGGCGACGCCAAGGACGGAGCCAATCA---ACAGCCGCTTCTTAACGGCAACGGCTC---GGCCAACGGAGCCGCCAAGGAGGTGCCCAGCATCAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...................................................................................................................................CGCTTCTTAACGGCAACGGCTC---GGC.................................	25	1	11.00	11	0	11	0	0	0	0	0	0	0	0
.............................................................................................CAACGGCGACGCCAAGGACGGAGC...........................................................................	24	1	7.00	7	0	7	0	0	0	0	0	0	0	0
.............................................................................................CAACGGCGACGCCAAGGACGGA.............................................................................	22	1	5.00	5	0	5	0	0	0	0	0	0	0	0
..............................................................................................................................................GGCAACGGCTC---GGCCAACGG...........................	20	1	4.00	4	0	4	0	0	0	0	0	0	0	0
.............................................................................................CAACGGCGACGCCAAGGACGGAG............................................................................	23	1	3.00	3	0	3	0	0	0	0	0	0	0	0
..............................GAAGACCAAGCTGGACGAGG..............................................................................................................................................	20	1	3.00	3	0	3	0	0	0	0	0	0	0	0
..............................................................................................AACGGCGACGCCAAGGACGGAGC...........................................................................	23	1	3.00	3	0	2	1	0	0	0	0	0	0	0
.............................................................................................CAACGGCGACGCCAAGGACGG..............................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
................................................................................................CGGCGACGCCAAGGACGGAGC...........................................................................	21	1	2.00	2	0	1	0	0	0	0	1	0	0	0
.............................................................................................................GACGGAGCCAATCA---ACAGC.............................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..............................GAAGACCAAGCTGGACGAGGCGC...........................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................CGCTTCTTAACGGCAACGGCTC---GGCC................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
....................................................................................ATAC---GACAACGGCGACGCCAAGGACGG..............................................................................	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............................................................................................ACAACGGCGACGCCAAGGACGGAGC...........................................................................	25	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................GGAGCCGCCAAGGAGGTGC..........	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................ACAACGGCGACGCCAAGGACGG..............................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................ATAGTC---------------AAAAAGCCATAC---GA...................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................TAC---GACAACGGCGACGCCAAG...................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................CAAGGAGGTGCCCAGCATC..	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................GGGGAGAAGACCAAGC.......................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	1
...........................................................................................GACAACGGCGACGCCAAGGACGGAGC...........................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................CGCCAAGGAGGTGCCCAGC.....	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................CAATCA---ACAGCCGCTTCTTAACGGC...............................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................GCAACGGCTC---GGCCAACGGA..........................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................C---------------AAAAAGCCATAC---GACAACGGC............................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................GCCGCCAAGGAGGTGCCCAGCAT...	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................GTC---------------AAAAAGCCATAC---GACAACGG.............................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................GCCAAGGACGGAGCCAATCA---ACAGC.............................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................GCTTCTTAACGGCAACGGCTC---GGC.................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................GAAGACCAAGCTGGACGAGGCGCA..........................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................ACGGCGACGCCAAGGACGG..............................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................AAAGCCATAC---GACAACGGCGAC.........................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................CAACGGAGCCGCCAAGGAGGT............	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................CA---ACAGCCGCTTCTTAACGG................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................CGCCAAGGAGGTGCCCAGCATCAA	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................CGCTTCTTAACGGCAACGGCT........................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................GACGAGGCGCAGATAGTC---------------....................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................AGATAGTC---------------AAAAAGCCATAC---GA...................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................AGCCATAC---GACAACGGCGACGCCAAG...................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................CGCTTCTTAACGGCAACGGC.........................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................CAACGGCTC---GGCCAACGG...........................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................TTCTTAACGGCAACGGCTC---GGC.................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................AC---GACAACGGCGACGCCAAG...................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................AACGGCGACGCCAAGGACGG..............................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
............................GAGAAGACCAAGCTGGACGAGG..............................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................CAATCA---ACAGCCGCTTCTTAACG.................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.............................AGAAGACCAAGCTGGACGAGGC.............................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................AATCA---ACAGCCGCTTCTTAAC..................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................GACGCCAAGGACGGAGCC..........................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................AGACCAAGCTGGACGAGGC.............................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................GAAGACCAAGCTGGACGAGGC.............................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................AAAGCCATAC---GACAACGGCGACGCCA.....................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................CATCGGGGAGAAGACCAAGCTGGACGA................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................GCTTCTTAACGGCAACGGC.........................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................ACGCCAAGGACGGAGCCAATCA---ACAGC.............................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................CGCTTCTTAACGGCAACGGCTC---....................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................CAACGGCGACGCCAAGGAC................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................C---GGCCAACGGAGCCGCCAAGGAGGT............	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........................................................................................................AAGGACGGAGCCAATCA---ACAGCCGC..........................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................GCCGCCAAGGAGGTGCCCAGCATC..	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................CGCAGATAGTC---------------AAAAAGCC............................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................AAGCCATAC---GACAACGGCGACGCCAAG...................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................C---GGCCAACGGAGCCGCCAAGGA...............	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................AAGGACGGAGCCAATCA---ACAGC.............................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	1
..............................................................................................AACGGCGACGCCAAGGACGGAGCC..........................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0
....................................................................................................GACGCCAAGGACGGAGCCAATCA---AC................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....................CATCGGGGAGAAGACCAAGCC......................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

--------------CACCGCTCATCGGGGAGAAGACCAAGCTGGACGAGGCGCAGATAGTC---------------AAAAAGCCGTAC---GACAACGGCGACGCCAAGGACGGAGCCAATCA---ACAGCCGCTTCTTAACGGCAACGGCTC---GGCCAACGGAGCCGCCAAGGAGGTGCCCAGCATCAA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..............................GAAGACCAAGCTGGACGAGGCGCAGAT.......................................................................................................................................	27	1	3.00	3	3	0	0	0	0	0
...................................................................................................................................CGCTTCTTAACGGCAACGGCTC---GGC.................................	25	1	3.00	3	0	3	0	0	0	0
.................................................GCGCAGATAGTC---------------AAAAAGC.............................................................................................................	19	1	3.00	3	3	0	0	0	0	0
..........................................................................................................AAGGACGGAGCCAATCA---ACAGC.............................................................	22	1	2.00	2	2	0	0	0	0	0
.............................................................................................CAACGGCGACGCCAAGGACGGAGC...........................................................................	24	1	2.00	2	1	0	1	0	0	0
......................................................GATAGTC---------------AAAAAGCCGTAC---.....................................................................................................	19	1	2.00	2	2	0	0	0	0	0
..........................................................................................................................................TAACGGCAACGGCTC---GGCCAACGG...........................	24	1	1.00	1	0	1	0	0	0	0
..................................................CGCAGATAGTC---------------AAAAAGC.............................................................................................................	18	1	1.00	1	1	0	0	0	0	0
......................................................................................AC---GACAACGGCGACGCCAAGG..................................................................................	21	1	1.00	1	0	1	0	0	0	0
......................................................GATAGTC---------------AAAAAGCCGTAC---G....................................................................................................	20	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................CGCTTCTTAACGGCAACGGCC........................................	21	1	1.00	1	1	0	0	0	0	0
...................................................................................CGTAC---GACAACGGCGACGCCAAG...................................................................................	23	1	1.00	1	0	1	0	0	0	0
...................................................................................CGTAC---GACAACGGCGACG........................................................................................	18	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................GGCCAACGGAGCCGCCAAGGAGGTGCCC........	28	1	1.00	1	0	0	1	0	0	0
.................................GACCAAGCTGGACGAGGC.............................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.....................CATCGGGGAGAAGACCAAGCTG.....................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.........................................................AGTC---------------AAAAAGCCGTAC---GAC..................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................CAACGGAGCCGCCAAGGAG..............	19	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................CA---ACAGCCGCTTCTTAAC..................................................	18	1	1.00	1	1	0	0	0	0	0
....................................................................................GTAC---GACAACGGCGACGCCAAGGACGGA.............................................................................	28	1	1.00	1	0	0	1	0	0	0
.................................................GCGCAGATAGTC---------------AAAAAGCC............................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.............................................................................................CAACGGCGACGCCAAGGACGGAGCC..........................................................................	25	1	1.00	1	0	1	0	0	0	0
............................GAGAAGACCAAGCTGGACGAGGC.............................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
...........................................................................................GACAACGGCGACGCCAAGGACGGAG............................................................................	25	1	1.00	1	0	0	0	0	0	1
......................................................................................AC---GACAACGGCGACGCCAAGGACGGA.............................................................................	26	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................GCTTCTTAACGGCAACGGCT........................................	20	1	1.00	1	0	0	0	0	0	1
.................................GACCAAGCTGGACGAGGCGCAG.........................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................CAACGGAGCCGCCAAGGAGGT............	21	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................CTTAACGGCAACGGCTC---GGC.................................	20	1	1.00	1	0	1	0	0	0	0
..............................................................................................AACGGCGACGCCAAGGACGGAGC...........................................................................	23	1	1.00	1	0	1	0	0	0	0
..............CACCGCTCATCGGGGAGAAGA.............................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.............................................................................................CAACGGCGACGCCAAGGACGGAG............................................................................	23	1	1.00	1	0	0	0	0	0	1

droWil2

TGGCCAGGAGCGTTCTCCTCTGATTGGAGAGAAGACCAAACTGGATGAGGCGCAGATAGTCAATGGCAACGGCACCAAGAAACCCTAC---GACAACAATGAAGTCAAGGATGCGGCCAGCCAACAGCAACCCCTGCTTAATGGCAACGGTTCGCCGGCCAATGG------CAAGGATGTGCCCACCATCAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..............................GAAGACCAAACTGGATGAGGC.............................................................................................................................................	21	1	8.00	8	0	2	6	0	0
.........................................................................................................CAAGGATGCGGCCAGCCAAC...................................................................	20	1	7.00	7	0	3	1	3	0
............................GAGAAGACCAAACTGGATGAGGC.............................................................................................................................................	23	1	7.00	7	0	0	7	0	0
.........................................................................................................CAAGGATGCGGCCAGCCAACAG.................................................................	22	1	5.00	5	0	1	0	4	0
.................................GACCAAACTGGATGAGGC.............................................................................................................................................	18	1	3.00	3	0	0	0	3	0
....................................................................................CTAC---GACAACAATGAAGT.......................................................................................	18	1	3.00	3	0	0	0	3	0
.....................GATTGGAGAGAAGACCAAACT......................................................................................................................................................	21	1	2.00	2	0	0	1	1	0
.............................................................................................CAACAATGAAGTCAAGGATGCGGCC..........................................................................	25	1	2.00	2	0	0	2	0	0
.....................GATTGGAGAGAAGACCAAACTGGAT..................................................................................................................................................	25	1	2.00	2	0	1	1	0	0
................................................................................................................................................CAACGGTTCGCCGGCCAAT.............................	19	1	2.00	2	0	2	0	0	0
..............................GAAGACCAAACTGGATGAGGCGCAGAT.......................................................................................................................................	27	1	2.00	2	0	0	2	0	0
........................................................................................................TCAAGGATGCGGCCAGCCAACAG.................................................................	23	1	2.00	2	0	0	0	1	1
....................................................................................................GAAGTCAAGGATGCGGCCAGC.......................................................................	21	1	2.00	2	0	1	0	1	0
....CAGGAGCGTTCTCCTCTGATTGGA....................................................................................................................................................................	24	1	2.00	2	0	1	1	0	0
...............................................AGGCGCAGATAGTCAATGGCA............................................................................................................................	21	1	2.00	2	0	0	0	0	2
..............................GAAGACCAAACTGGATGAGGCG............................................................................................................................................	22	1	2.00	2	0	1	1	0	0
...............................AAGACCAAACTGGATGAGGC.............................................................................................................................................	20	1	2.00	2	0	0	2	0	0
....CAGGAGCGTTCTCCTCTGATTGGAGA..................................................................................................................................................................	26	1	2.00	2	0	0	1	1	0
.......................................................................................................GTCAAGGATGCGGCCAGCCAAC...................................................................	22	1	1.00	1	0	0	0	1	0
.................................................................................................................................................AACGGTTCGCCGGCCAATGG------CAAGGAT..............	27	1	1.00	1	0	0	0	1	0
....................................................CAGATAGTCAATGGCAACGG........................................................................................................................	20	1	1.00	1	0	0	0	1	0
..............................................................................................AACAATGAAGTCAAGGATGCGGCCAG........................................................................	26	1	1.00	1	1	0	0	0	0
.................................GACCAAACTGGATGAGGCGCAGAT.......................................................................................................................................	24	1	1.00	1	0	0	1	0	0
...........................AGAGAAGACCAAACTGGATGAGGCG............................................................................................................................................	25	1	1.00	1	0	0	1	0	0
....................................................................................................GAAGTCAAGGATGCGGCCAGCCAAC...................................................................	25	1	1.00	1	0	1	0	0	0
.................................................................................................AATGAAGTCAAGGATGCGGCCAGC.......................................................................	24	1	1.00	1	0	0	0	1	0
.....................................AAACTGGATGAGGCGCAGATAGTCAAT................................................................................................................................	27	1	1.00	1	0	0	0	1	0
............................GAGAAGACCAAACTGGATGAGGCGCAG.........................................................................................................................................	27	1	1.00	1	0	1	0	0	0
.............................................................................................................................AGCAACCCCTGCTTAATGGC...............................................	20	1	1.00	1	0	1	0	0	0
................................................................................................CAATGAAGTCAAGGATGCGGC...........................................................................	21	1	1.00	1	0	0	0	1	0
.........................................................................................................................CAACAGCAACCCCTGCTTAATGG................................................	23	1	1.00	1	0	1	0	0	0
.............................................................................................CAACAATGAAGTCAAGGATGC..............................................................................	21	1	1.00	1	0	0	1	0	0
.................................................................GCAACGGCACCAAGAAACCCTAC---GA...................................................................................................	25	1	1.00	1	0	1	0	0	0
..........................................................................................................AAGGATGCGGCCAGCCAAC...................................................................	19	1	1.00	1	0	0	0	1	0
.................................GACCAAACTGGATGAGGCGCAGATAGT....................................................................................................................................	27	1	1.00	1	0	0	1	0	0
..............................................................................................AACAATGAAGTCAAGGATGC..............................................................................	20	1	1.00	1	0	0	0	1	0
.......................................................ATAGTCAATGGCAACGGCACCA...................................................................................................................	22	1	1.00	1	0	0	0	1	0
................................AGACCAAACTGGATGAGGCG............................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.....................................AAACTGGATGAGGCGCAGATAGTCAATG...............................................................................................................................	28	1	1.00	1	0	0	1	0	0
..............................GAAGACCAAACTGGATGAGGCGCAGATA......................................................................................................................................	28	1	1.00	1	0	1	0	0	0
.......................................................ATAGTCAATGGCAACGGC.......................................................................................................................	18	1	1.00	1	0	0	0	1	0
..............................................................................................AACAATGAAGTCAAGGATGCGGCC..........................................................................	24	1	1.00	1	0	0	1	0	0
.....AGGAGCGTTCTCCTCTGATTGGAGAGA................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
....................................................................................CTAC---GACAACAATGAAGTCAAGG..................................................................................	23	1	1.00	1	0	1	0	0	0
..................................................................................................................GGCCAGCCAACAGCAACCCCTGC.......................................................	23	1	1.00	1	0	1	0	0	0
.................................GACCAAACTGGATGAGGCGCA..........................................................................................................................................	21	1	1.00	1	0	0	0	1	0
..............................................GAGGCGCAGATAGTCAATGG..............................................................................................................................	20	1	1.00	1	0	0	1	0	0
...................................................GCAGATAGTCAATGGCAACGGCAC.....................................................................................................................	24	1	1.00	1	0	0	0	1	0
.............................................................AATGGCAACGGCACCAAGAAACC............................................................................................................	23	1	1.00	1	0	0	0	1	0
....CAGGAGCGTTCTCCTCTGATTGGAG...................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
............................................................................................ACAACAATGAAGTCAAGGAT................................................................................	20	1	1.00	1	1	0	0	0	0
.................................GACCAAACTGGATGAGGCGC...........................................................................................................................................	20	1	1.00	1	0	0	0	0	1
................................................................................................................................................CAACGGTTCGCCGGCCAATGG------CA...................	23	1	1.00	1	0	1	0	0	0
......................................................GATAGTCAATGGCAACGGC.......................................................................................................................	19	1	1.00	1	0	0	0	1	0
.........GCGTTCTCCTCTGATTGGAGAGA................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
......................................................GATAGTCAATGGCAACGGCACCAAGAA...............................................................................................................	27	1	1.00	1	0	0	0	1	0
..............................GAAGACCAAACTGGATGAGGCGCA..........................................................................................................................................	24	1	1.00	1	0	0	1	0	0
...................................................GCAGATAGTCAATGGCAACG.........................................................................................................................	20	1	1.00	1	0	1	0	0	0
...CCAGGAGCGTTCTCCTCTGATTGGA....................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
.............................................................AATGGCAACGGCACCAAGA................................................................................................................	19	1	1.00	1	0	1	0	0	0
..............................................................................................AACAATGAAGTCAAGGATGCGGC...........................................................................	23	1	1.00	1	0	0	1	0	0
...............................AAGACCAAACTGGATGAG...............................................................................................................................................	18	1	1.00	1	0	0	0	1	0
..................................................CGCAGATAGTCAATGGCAACG.........................................................................................................................	21	1	1.00	1	0	0	1	0	0
..........................................................................................................AAGGATGCGGCCAGCCAACAG.................................................................	21	1	1.00	1	0	0	0	1	0
...................................................GCAGATAGTCAATGGCAACGGC.......................................................................................................................	22	1	1.00	1	0	0	0	1	0
.....................GATTGGAGAGAAGACCAAACTG.....................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
..................................................................................................ATGAAGTCAAGGATGCGGCCAGCCAAC...................................................................	27	1	1.00	1	0	0	0	1	0
................................................................................................................................................CAACGGTTCGCCGGCCAATG............................	20	1	1.00	1	0	0	0	1	0
...........................................................................................................AGGATGCGGCCAGCCAAC...................................................................	18	1	1.00	1	0	0	0	1	0
................................................................................................CAATGAAGTCAAGGATGCGGCCAGC.......................................................................	25	1	1.00	1	0	0	1	0	0
............................GAGAAGACCAAACTGGATGAGGCGC...........................................................................................................................................	25	1	1.00	1	0	0	0	1	0
................................................................................AACCCTAC---GACAACAATGAAGT.......................................................................................	22	1	1.00	1	0	0	0	1	0
...........................................................................CAAGAAACCCTAC---GACAACAATGAAGT.......................................................................................	27	1	1.00	1	0	0	1	0	0
..............................................................................................................ATGCGGCCAGCCAACAGC................................................................	18	1	1.00	1	0	0	0	1	0
.................................................GCGCAGATAGTCAATGGC.............................................................................................................................	18	1	1.00	1	1	0	0	0	0
.....................................AAACTGGATGAGGCGCAGATAGTC...................................................................................................................................	24	1	1.00	1	0	0	1	0	0
..........................................................GTCAATGGCAACGGCACCAAGA................................................................................................................	22	1	1.00	1	0	0	1	0	0
...........................................GATGAGGCGCAGATAGTC...................................................................................................................................	18	1	1.00	1	0	0	0	1	0
..................................................................................................ATGAAGTCAAGGATGCGGCCA.........................................................................	21	1	1.00	1	0	0	0	1	0
.............................................................................................CAACAATGAAGTCAAGGATGCGGCCA.........................................................................	26	1	1.00	1	0	0	0	1	0
............................................................................................ACAACAATGAAGTCAAGGA.................................................................................	19	1	1.00	1	0	1	0	0	0
......................................................................GGCACCAAGAAACCCTAC---GAC..................................................................................................	21	1	1.00	1	0	1	0	0	0
........................................................................CACCAAGAAACCCTAC---GACAACAATGA..........................................................................................	27	1	1.00	1	0	1	0	0	0
............................................ATGAGGCGCAGATAGTCAAT................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.....................GATTGGAGAGAAGACCAAACTGGATGAG...............................................................................................................................................	28	1	1.00	1	0	0	1	0	0
...................................................GCAGATAGTCAATGGCAACGGCA......................................................................................................................	23	1	1.00	1	0	0	1	0	0
.......GAGCGTTCTCCTCTGATTG......................................................................................................................................................................	19	2	0.50	1	0	0	0	1	0

droVir3

-----------ACTCACCCTTGATAGGTGAGAAGACCAAGCTGGACGAGGCACAGATTGTGAACGGCAACGG---CAAGAAGCCGTAC---GATA---------GCAAGGATGGGGCTGGGCA---GCAGCCGCTGCTGAATGGCAACGGCAC---TGCCAACGGCGATGCCAAGGAGGTGCCCACCATCAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
........................................................................................................................................CTGAATGGCAACGGCAC---TGC.................................	20	1	6.00	6	5	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................CAACGGCGATGCCAAGGAGGT............	21	1	4.00	4	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................GCTGCTGAATGGCAACGGCAC---TGC.................................	24	1	3.00	3	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................GTAC---GATA---------GCAAGGATGGGGCTGGGC......................................................................	26	1	3.00	3	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................ACAGATTGTGAACGGCAACGG---.....................................................................................................................	21	1	3.00	3	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................GCTGAATGGCAACGGCAC---TGC.................................	21	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................GATGCCAAGGAGGTGCCCACCAT...	23	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................ACAGATTGTGAACGGCAACGG---CAAGA................................................................................................................	26	1	2.00	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
............................GAGAAGACCAAGCTGGAC..................................................................................................................................................	18	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.......................................................ATTGTGAACGGCAACGG---C....................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................CGCTGCTGAATGGCAACGGCAC---TGC.................................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GAGAAGACCAAGCTGGACGAGGCACA..........................................................................................................................................	26	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
............................GAGAAGACCAAGCTGGACGAGGCACAG.........................................................................................................................................	27	1	2.00	2	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................TGCCAACGGCGATGCCAAGGA...............	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................GCTGAATGGCAACGGCAC---TGCC................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................AACGGCGATGCCAAGGAGGTGCCCACC.....	27	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................CGCTGCTGAATGGCAACGGCAC---T...................................	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................CGTAC---GATA---------GCAAGGATGGGGCTGG........................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................CTGAATGGCAACGGCAC---TGCCAACGGC..........................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................AAGGATGGGGCTGGGCA---GC................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................CAAGCTGGACGAGGCACAGATTGTGAAC................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................C---GATA---------GCAAGGATGGGGCTGGGC......................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................GAAGACCAAGCTGGACGAGG..............................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............ACCCTTGATAGGTGAGAAGACCAAGCTG.....................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................GACCAAGCTGGACGAGGCACAGATT......................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................TTGTGAACGGCAACGG---CAAGAAGC.............................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................ACAGATTGTGAACGGCAACGG---CAAGAA...............................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................GCACAGATTGTGAACGGCAAC..........................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................ATGGGGCTGGGCA---GCAGC.............................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................AGGCACAGATTGTGAACGGCAACGG---CAAGAA...............................................................................................................	31	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................ACAGATTGTGAACGGCAACGG---CA...................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................CAACGGCGATGCCAAGGAGGTGCC.........	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................CAACGGCGATGCCAAGGA...............	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................AAGAAGCCGTAC---GATA---------GCAAGGATG...............................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................TTGTGAACGGCAACGG---CAAGA................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............CACCCTTGATAGGTGAGAAGA.............................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................AGATTGTGAACGGCAACGG---CAAGAAGCC............................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................GAAGACCAAGCTGGACGAG...............................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..............................GAAGACCAAGCTGGACGAGGCACA..........................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................GATGCCAAGGAGGTGCCCACCATC..	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................GCAAGGATGGGGCTGGGCA---GCAGCCGCT.........................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................CGAGGCACAGATTGTGAACGGCAACGG---C....................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................TA---------GCAAGGATGGGGCTGGGCA---GCAGC.............................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................GGACGAGGCACAGATTGTGAACGGC.............................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................GCCGTAC---GATA---------GCAAGGATG...............................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TAGGTGAGAAGACCAAGCTGGC...................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TGCTGAATGGCAACGGCAC---TGC.................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................CGCTGCTGAATGGCAACGGCAC---TGCC................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................CGTAC---GATA---------GCAAGGATGGG.............................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............................GAGAAGACCAAGCTGGACGAGGC.............................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................AACGGCGATGCCAAGGAGGT............	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CCCTTGATAGGTGAGAAGACCAA.........................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................CAGATTGTGAACGGCAACGG---.....................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................AAGAAGCCGTAC---GATA---------GCAAGGATGG..............................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......................................................................GG---CAAGAAGCCGTAC---GATA---------GCAAGGATGGG.............................................................................	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................GCTGAATGGCAACGGCAC---T...................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................CGAGGCACAGATTGTGAACGGCAAC..........................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................AC---TGCCAACGGCGATGCCAAGG................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................GAGGCACAGATTGTGAACGGCAACGG---C....................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................ACAGATTGTGAACGGCAAC..........................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
........................................................................................................................................CTGAATGGCAACGGCAC---TGCC................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................CGCTGCTGAATGGCAACG...........................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................GTAC---GATA---------GCAAGGATGGGGCT..........................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................AACGGCAC---TGCCAACGGCGAT.......................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................CAAGAAGCCGTAC---GATA---------GCAAGGATGGG.............................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.........................................................................................................CAAGGATGGGGCTGGGCA---GCAGCCGCT.........................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................TGAATGGCAACGGCAC---TGC.................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................TTGTGAACGGCAACGG---CAAGAAGCC............................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TGCTGAATGGCAACGGCAC---TGCCAACG............................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................GCAAGGATGGGGCTGGGCA---GCAGC.............................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............CACCCTTGATAGGTGAGAAGACCAAGCT......................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................TGTGAACGGCAACGG---CAAGAAGC.............................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
............................................................GAACGGCAACGG---CAAGAAGCC............................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................GAACGGCAACGG---CAAGAAGCT............................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................GATTGTGAACGGCAACGG---CAAGAAGC.............................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................CAAGCTGGACGAGGCACAG.........................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................GCAGCCGCTGCTGAATGGCAAC............................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................GACCAAGCTGGACGAGGCACA..........................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................A---------GCAAGGATGGGGCTGGGG......................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................GTAC---GATA---------GCAAGGATGGGGCTGGGG......................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................................GCCGTAC---GATA---------GCAAGGATGGGGCT..........................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................GGCACAGATTGTGAACGG..............................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................................ACCAAGCTGGACGAGGCACAGATTGT....................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................CAACGGCGATGCCAAGGAGG.............	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

--------------CGCCATTGATTGGCGAGAAGACGAAGCTGGATGAGGCACAGATTGTGAATGGATCGGG---CAAGAAGCCGTAC---GATA---------GCAAAGACGGTGCTGGACA---GCAGCCGCTGCTCAATGGCAATGGAAC---AGCCAATGGAGATGCCAAGGAGGTGCCGACCATCAA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
....................................................................CGGG---CAAGAAGCCGTAC---GATA---------GC......................................................................................	23	1	4.00	4	2	0	1	0	0	1
....................................................................................GTAC---GATA---------GCAAAGACGGT.............................................................................	19	1	3.00	3	1	0	0	0	0	2
............................GAGAAGACGAAGCTGGATGAG...............................................................................................................................................	21	1	3.00	3	1	0	0	0	0	2
.................CATTGATTGGCGAGAAGAC............................................................................................................................................................	19	1	3.00	3	2	0	0	0	0	1
............................................................GAATGGATCGGG---CAAGAAGCCGTAC---GAT..................................................................................................	28	1	3.00	3	0	0	0	0	0	3
............................................................GAATGGATCGGG---CAAGAAGCC............................................................................................................	21	1	3.00	3	3	0	0	0	0	0
................................AGACGAAGCTGGATGAGG..............................................................................................................................................	18	1	2.00	2	1	0	0	0	0	1
.........................................................................................................................................................................GCCAAGGAGGTGCCGACC.....	18	1	2.00	2	2	0	0	0	0	0
..........................................................GTGAATGGATCGGG---CAAGAAGCCGTAC---G....................................................................................................	28	1	2.00	2	0	0	0	0	0	2
................................................................................................................................................CAATGGAAC---AGCCAATGGA..........................	19	1	2.00	2	0	0	0	0	0	2
.............................AGAAGACGAAGCTGGATGAG...............................................................................................................................................	20	1	2.00	2	1	0	0	0	0	1
..............................GAAGACGAAGCTGGATGAG...............................................................................................................................................	19	1	2.00	2	0	0	0	0	0	2
..........................................................................................................................................CAATGGCAATGGAAC---AGCCAATGGAGA........................	27	1	2.00	2	2	0	0	0	0	0
..................................................................ATCGGG---CAAGAAGCCGTAC---GATA---------GC......................................................................................	25	1	2.00	2	2	0	0	0	0	0
...........................................................................CAAGAAGCCGTAC---GATA---------GC......................................................................................	19	1	1.00	1	0	0	0	0	0	1
..............................GAAGACGAAGCTGGATGAGGC.............................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.......................................................ATTGTGAATGGATCGGG---CAAGAAGC.............................................................................................................	25	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................A---GCAGCCGCTGCTCAATGGCAATGGA.........................................	26	1	1.00	1	1	0	0	0	0	0
..................ATTGATTGGCGAGAAGACGAAGC.......................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
............................................................GAATGGATCGGG---CAAGAAGC.............................................................................................................	20	1	1.00	1	0	0	0	0	0	1
...................................................................................................................GCTGGACA---GCAGCCGCTGCT......................................................	20	1	1.00	1	1	0	0	0	0	0
..............................................................ATGGATCGGG---CAAGAAGCC............................................................................................................	19	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................TGCTCAATGGCAATGGAAC---A...................................	20	1	1.00	1	1	0	0	0	0	0
.................................................GCACAGATTGTGAATGGATC...........................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.................CATTGATTGGCGAGAAGACGAA.........................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................GAAC---AGCCAATGGAGATGCCAAGGA...............	25	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................CAATGGAGATGCCAAGGAGGTGCC.........	24	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................GGAAC---AGCCAATGGAGATGCCAAGGAG..............	27	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................AATGGCAATGGAAC---AGCCAATGGA..........................	24	1	1.00	1	1	0	0	0	0	0
................................................................GGATCGGG---CAAGAAGCCGTAC---.....................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.................................................GCACAGATTGTGAATGGAT............................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
....................................................................................GTAC---GATA---------GCAAAGACGGTGCTGGAC......................................................................	26	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................TGGAGATGCCAAGGAGGTGCC.........	21	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................CA---GCAGCCGCTGCTCAATG.................................................	19	1	1.00	1	1	0	0	0	0	0
..............................GAAGACGAAGCTGGATGAGGCACAGATT......................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................GCAATGGAAC---AGCCAATGGA..........................	20	1	1.00	1	0	0	0	0	0	1
....................................................................................GTAC---GATA---------GCAAAGACGGTGCTGG........................................................................	24	1	1.00	1	1	0	0	0	0	0
...................................................................................CGTAC---GATA---------GCAAAGACGGTGCTG.........................................................................	24	1	1.00	1	0	0	0	0	0	1
...............................................................................................................CGGTGCTGGACA---GCAGCCGCTGCT......................................................	24	1	1.00	1	1	0	0	0	0	0
.................CATTGATTGGCGAGAAGA.............................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................CCAATGGAGATGCCAAGGAGG.............	21	1	1.00	1	1	0	0	0	0	0
.........................................................................................................CAAAGACGGTGCTGGACA---GCA...............................................................	21	1	1.00	1	1	0	0	0	0	0
..................................................CACAGATTGTGAATGGATCGGG---C....................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
...................................CGAAGCTGGATGAGGCACAG.........................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...........................................GATGAGGCACAGATTGTGAATGGAT............................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................ATGGAGATGCCAAGGAGGT............	19	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................C---AGCCAATGGAGATGCCAAGGA...............	22	1	1.00	1	1	0	0	0	0	0
..............................................GAGGCACAGATTGTGAATGG..............................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
....................................................................................................................CTGGACA---GCAGCCGCTGCT......................................................	19	1	1.00	1	0	0	0	0	1	0
.......................................................................................................................................GCTCAATGGCAATGGAAC---AGC.................................	21	1	1.00	1	1	0	0	0	0	0
.............................................................................AGAAGCCGTAC---GATA---------GCAAAGT.................................................................................	22	1	1.00	1	0	0	0	0	0	1
............................GAGAAGACGAAGCTGGATGAGG..............................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
....................................................................CGGG---CAAGAAGCCGTAC---GAT..................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..............................................................................................A---------GCAAAGACGGTGCTGGACA---GCAGCCG...........................................................	27	1	1.00	1	1	0	0	0	0	0
................................................................................................................................AGCCGCTGCTCAATGGCAATG...........................................	21	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................TGGACA---GCAGCCGCTGCTCAATG.................................................	23	1	1.00	1	1	0	0	0	0	0
...................................CGAAGCTGGATGAGGCACAGATTGTG...................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
.............................................................AATGGATCGGG---CAAGAAGCC............................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................AC---AGCCAATGGAGATGCCAAGGAGGTC...........	27	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................CGCTGCTCAATGGCAATGGAAC---AGCC................................	26	1	1.00	1	0	0	0	0	1	0
.............................................................................AGAAGCCGTAC---GATA---------GCAAAGACGGTG............................................................................	27	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................CAATGGAAC---AGCCAATGGAGA........................	21	1	1.00	1	0	0	0	0	0	1
................................................................GGATCGGG---CAAGAAGCCGTAC---GATA---------........................................................................................	25	1	1.00	1	1	0	0	0	0	0
.................................GACGAAGCTGGATGAGGCACAGATTGT....................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
....................................................................................................................CTGGACA---GCAGCCGCTGCTC.....................................................	20	1	1.00	1	1	0	0	0	0	0
...................................................................TCGGG---CAAGAAGCCGTAC---GATA---------GCAA....................................................................................	26	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................ATGGAAC---AGCCAATGGAGATGC.....................	22	1	1.00	1	1	0	0	0	0	0
.........................................................TGTGAATGGATCGGG---CAAGA................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.............................................................................AGAAGCCGTAC---GATA---------GCAAA...................................................................................	20	1	1.00	1	0	0	0	0	0	1
...................................CGAAGCTGGATGAGGCACAGATT......................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
...........................................................................................GATA---------GCAAAGACGGTGCTGG........................................................................	20	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................TCAATGGCAATGGAAC---AGC.................................	19	1	1.00	1	1	0	0	0	0	0
............................................................GAATGGATCGGG---CAAGAAGCCGT..........................................................................................................	23	1	1.00	1	0	0	0	0	0	1
..................ATTGATTGGCGAGAAGACGAA.........................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................GCCAATGGAGATGCCAAGG................	19	2	0.50	1	1	0	0	0	0	0

droGri2

--------------CGCCGCTCATTGGAGAGAAGGGCAAGGTGGATGATGCCCAGATTATCAATGGCGCCGG---GAAGAAGCCCTAC---GATA---------GCAAGGACAACGCTGGGCA---ACAGCCACTACTTAATGGCAACGGTGC---AGCCAATGGCGATGGCAAGGAGGTGCCCAAAATTGT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
....................................................................................................................................................................GCGATGGCAAGGAGGTGCCCA.......	21	1	2.00	2	2	0
.................................................................................................................................................................ATGGCGATGGCAAGGAGGTGCC.........	22	1	1.00	1	1	0
......................ATTGGAGAGAAGGGCAAGGT......................................................................................................................................................	20	1	1.00	1	0	1
............................................................................................ATA---------GCAAGGACAACGCTGGGCA---..................................................................	22	1	1.00	1	1	0
..................................................................................................................................................ACGGTGC---AGCCAATGGCGATG......................	21	1	1.00	1	1	0
.............................................................AATGGCGCCGG---GAAGAAGCCCTAC---.....................................................................................................	24	1	1.00	1	0	1
..............................................................ATGGCGCCGG---GAAGAAGCCC...........................................................................................................	20	1	1.00	1	1	0
...........................................................TCAATGGCGCCGG---GAAGAAGCCCTA.........................................................................................................	25	1	1.00	1	0	1
.............................................................................................................................................................GCCAATGGCGATGGCAAGGAGGTGCCC........	27	1	1.00	1	1	0

dsi_1557

2r:18724408-18724467 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-21.1	-20.3	-20.3