ID:

dsi_15555

 Coordinate:

node_28136:10833-10883 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.8 -4.7 -4.4

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
hAT-2_DSeDNAhAT-Ac-
mature
  1. 2l:19709282-19709306 +
  2. 2r:11294-11318 -
  3. 3r:367966-367990 -
  4. node_32265:132-156 +
  5. dsi_15555  node_28136:10843-10867 -
  6. node_32266:40-64 +
star

Sense Strand Reads

GGTTTCTCCGCACAGGCGTCACTAACACTTTGATACAGCGAGAGAGACATGTAAGTTTGGTAAATTTTATACGGAATGGAAATTATAGTTTTCTTTTTCAGATTTTAGAAAAGAAATAACTATTTGATAAGATTGGTGGTGTTGGAAGCGG
**************************************************......................((((.(((((.......))))).))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 O001
Testis
 SRR902009
testis
 SRR902008
ovaries
 M025
embryo
 O002
Head
 M053
female body
 M024
male body		 GSM343915
embryo
......................TAACACTTTGATACAGCGAGAGAGACA...................................................................................................... 27 0 4 40.25 161 102 34 19 3 0 0 0 0 0 0 3 0 0
...................CACTAACACTTTGATACAGCGAGAGA.......................................................................................................... 26 0 4 33.50 134 100 31 0 3 0 0 0 0 0 0 0 0 0
..................................................................TTATACGGAATGGAAATTATAGTTT............................................................ 25 0 6 31.33 188 126 57 0 2 0 0 1 1 0 0 1 0 0
......................TAACACTTTGATACAGCGAGAGAGA........................................................................................................ 25 0 5 27.60 138 58 45 22 13 0 0 0 0 0 0 0 0 0
........................................................................................................................TATTTGATAAGATTGGTGGTGTTGGA..... 26 0 1 25.00 25 17 7 1 0 0 0 0 0 0 0 0 0 0
..................................................................TTATACGGAATGGAAATTATAGTTTTC.......................................................... 27 0 5 23.80 119 94 23 0 2 0 0 0 0 0 0 0 0 0
...................CACTAACACTTTGATACAGCGAGAG........................................................................................................... 25 0 4 22.25 89 66 19 4 0 0 0 0 0 0 0 0 0 0
.........................................................TGGTAAATTTTATACGGAATGGAAAT.................................................................... 26 0 8 21.00 168 0 4 147 15 2 0 0 0 0 0 0 0 0
.........................................................TGGTAAATTTTATACGGAATGGAA...................................................................... 24 0 8 16.88 135 0 5 84 36 1 8 1 0 0 0 0 0 0
...................CACTAACACTTTGATACAGCGAGAGAGA........................................................................................................ 28 0 3 16.33 49 38 11 0 0 0 0 0 0 0 0 0 0 0
.........................................................TGGTAAATTTTATACGGAATGGAAA..................................................................... 25 0 8 14.25 114 0 2 64 46 0 0 1 0 0 0 1 0 0
...................CACTAACACTTTGATACAGCGAGAGAG......................................................................................................... 27 0 3 12.67 38 34 4 0 0 0 0 0 0 0 0 0 0 0
...................CACTAACACTTTGATACAGCGAGAGAGACA...................................................................................................... 30 0 3 12.00 36 33 3 0 0 0 0 0 0 0 0 0 0 0
...................CACTAACACTTTGATACAGCGAGA............................................................................................................ 24 0 4 11.00 44 28 14 2 0 0 0 0 0 0 0 0 0 0
...................CACTAACACTTTGATACAGCGAG............................................................................................................. 23 0 4 9.50 38 32 5 1 0 0 0 0 0 0 0 0 0 0
..................................................................TTATACGGAATGGAAATTATAGTTTT........................................................... 26 0 5 8.20 41 29 11 0 1 0 0 0 0 0 0 0 0 0
..................................................................TTATACGGAATGGAAATTATAGTT............................................................. 24 0 6 6.50 39 28 11 0 0 0 0 0 0 0 0 0 0 0
.......................................................TTTGGTAAATTTTATACGGAATGGA....................................................................... 25 0 8 5.25 42 0 0 24 0 11 0 5 2 0 0 0 0 0
..........................................................................................................................TTTGATAAGATTGGTGGTGTTGGA..... 24 0 1 5.00 5 3 1 1 0 0 0 0 0 0 0 0 0 0
..................TCACTAACACTTTGATACAGCGAGA............................................................................................................ 25 0 4 4.75 19 3 16 0 0 0 0 0 0 0 0 0 0 0
..................TCACTAACACTTTGATACAGCGAG............................................................................................................. 24 0 4 4.50 18 1 17 0 0 0 0 0 0 0 0 0 0 0
......................TAACACTTTGATACAGCGAGAGA.......................................................................................................... 23 0 6 3.83 23 9 10 4 0 0 0 0 0 0 0 0 0 0
.........................CACTTTGATACAGCGAGAGAGACA...................................................................................................... 24 0 5 3.40 17 13 3 1 0 0 0 0 0 0 0 0 0 0
.........................................................TGGTAAATTTTATACGGAATGGA....................................................................... 23 0 8 3.38 27 0 0 19 7 1 0 0 0 0 0 0 0 0
.......................................................TTTGGTAAATTTTATACGGAATGGAA...................................................................... 26 0 8 3.38 27 0 0 15 0 9 0 3 0 0 0 0 0 0
.........................CACTTTGATACAGCGAGAGAGACATG.................................................................................................... 26 0 5 3.00 15 14 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................TCAGATTTTAGAAAAGAAATAACTATT........................... 27 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0 0 0
...................................................TAAGTTTGGTAAATTTTATACGGAA........................................................................... 25 0 7 2.43 17 4 8 4 1 0 0 0 0 0 0 0 0 0
.................................................TGTAAGTTTGGTAAATTTTATACGGAA........................................................................... 27 0 6 2.33 14 8 4 1 1 0 0 0 0 0 0 0 0 0
......................TAACACTTTGATACAGCGAGAGAGAC....................................................................................................... 26 0 4 2.25 9 5 2 2 0 0 0 0 0 0 0 0 0 0
.................................................................................................................AAATAACTATTTGATAAGATTGGTG............. 25 0 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0 0 0
................................................................................................TTCAGATTTTAGAAAAGAAATAACTAT............................ 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
......................TAACACTTTGATACAGCGAGAGAGACATG.................................................................................................... 29 0 4 2.00 8 8 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TGAAAATTATAGTTTTATTTTTCAGA................................................. 26 2 7 2.00 14 1 4 2 7 0 0 0 0 0 0 0 0 0
.......................................................TTTGGTAAATTTTATACGGAATGGAAA..................................................................... 27 0 8 1.88 15 0 1 4 0 6 0 4 0 0 0 0 0 0
..................................................................TTATACGGAATGGAAATTATAGTTTTCT......................................................... 28 0 4 1.75 7 4 3 0 0 0 0 0 0 0 0 0 0 0
......................TAACACTTTGATACAGCGAGAGAG......................................................................................................... 24 0 5 1.60 8 5 1 2 0 0 0 0 0 0 0 0 0 0
.......................................................TTTGGTAAATTTTATACGGAATGG........................................................................ 24 0 8 1.50 12 0 0 3 0 8 0 0 1 0 0 0 0 0
..................TCACTAACACTTTGATAC................................................................................................................... 18 0 6 1.33 8 0 0 0 0 0 8 0 0 0 0 0 0 0
.......................................................TTTGGTAAATTTTATACGGAATGGAAAT.................................................................... 28 0 8 1.25 10 0 2 4 0 2 0 1 1 0 0 0 0 0
..................TCACTAACACTTTGATACAGCGAGAGA.......................................................................................................... 27 0 4 1.25 5 1 4 0 0 0 0 0 0 0 0 0 0 0
..............................................................AATTTTATACGGAATGGAAA..................................................................... 20 0 8 1.13 9 0 0 0 0 1 0 0 0 0 8 0 0 0
..................................................................................TTATAGTTTTCTTTTTCAGATTTTAGAA......................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................TATAGTTTTCTTTTTCAGATTTTAGA.......................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................TAACTATTTGATAAGATTGGTGGTGTTGGA..... 30 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................TTAGAAAAGAAATAACTATTTGATAAGA................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................TTTTATACGGAATGGAAATTATA................................................................ 23 0 8 1.00 8 0 0 0 0 0 8 0 0 0 0 0 0 0
......................TAACACTTTGATACAGCGAGAG........................................................................................................... 22 0 6 1.00 6 0 0 0 0 0 6 0 0 0 0 0 0 0
..................................................................TTATACGGAATGGAAATTATAGT.............................................................. 23 0 7 1.00 7 7 0 0 0 0 0 0 0 0 0 0 0 0
................................................................TTTTATACGGAATGGAAATTATAG............................................................... 24 0 7 1.00 7 0 0 0 0 0 7 0 0 0 0 0 0 0
.........................................................................................................TAGAAAAGAAATAACTATTTGATAAGA................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................TTTTATACGGAATGGAAAT.................................................................... 19 0 8 1.00 8 0 0 0 0 0 0 0 0 0 8 0 0 0
................................................................................................TTCAGATTTTAGAAAAGAAATAAC............................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................TTTGATACAGCGAGAGAGACATGTA.................................................................................................. 25 0 7 1.00 7 1 4 0 2 0 0 0 0 0 0 0 0 0
.....................................................................................TAGTTTTCTTTTTCAGATTTTAGA.......................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................TTGATAAGATTGGTGGTGTTG....... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................TATTTGATAAGATTGGTGGTGTCGGA..... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................TAACACTTTGATACAGCGA.............................................................................................................. 19 0 6 1.00 6 0 0 0 0 0 6 0 0 0 0 0 0 0
..................................................................TTATACGGAATGGAAATTA.................................................................. 19 0 8 1.00 8 0 0 0 0 0 8 0 0 0 0 0 0 0
...................CACTAACACTTTGATACAGCGAGAGAGAC....................................................................................................... 29 0 3 1.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0
......TCCGCACTGGCGTCACTAACACTTTGA...................................................................................................................... 27 1 6 0.83 5 0 1 4 0 0 0 0 0 0 0 0 0 0
.........................................................TGGTAAATTTTATACGGAATGGAAAA.................................................................... 26 1 8 0.75 6 0 0 2 2 0 0 2 0 0 0 0 0 0
...................................................................TATACGGAATGGAAATTATAGTTTTCT......................................................... 27 0 4 0.75 3 0 0 0 0 0 0 2 1 0 0 0 0 0
..................TCACTAACACTTTGATACAGCGAGAG........................................................................................................... 26 0 4 0.75 3 0 3 0 0 0 0 0 0 0 0 0 0 0
........CGCACTGGCGTCACTAACACTTTGATA.................................................................................................................... 27 1 6 0.67 4 1 0 3 0 0 0 0 0 0 0 0 0 0
.........................CACTTTGATACAGCGAGAGAGACATGTA.................................................................................................. 28 0 5 0.60 3 3 0 0 0 0 0 0 0 0 0 0 0 0
.........................CACTTTGATACAGCGAGAGAGACATGT................................................................................................... 27 0 5 0.60 3 2 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TATTTGATAAGATTGCTGGTGTTGGA..... 26 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................TGGTAAATTTTATACGGAATGGAAATTA.................................................................. 28 0 8 0.50 4 1 1 0 2 0 0 0 0 0 0 0 0 0
.....................CTAACACTTTGATACAGCGAGAGA.......................................................................................................... 24 0 4 0.50 2 1 0 1 0 0 0 0 0 0 0 0 0 0
...................GACTAACACTTTGATACAGCGAGA............................................................................................................ 24 1 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0 0 0
......................TAACACCTTGATACAGCGAGAGAGACA...................................................................................................... 27 1 4 0.50 2 0 2 0 0 0 0 0 0 0 0 0 0 0
............CAGGCGTCACTAACACTTTGATACAGC................................................................................................................ 27 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................CGTCACTAACACTTTGATACAGCGAGAGA.......................................................................................................... 29 0 4 0.50 2 1 0 1 0 0 0 0 0 0 0 0 0 0
...................CACTAACACTTTGATACAGC................................................................................................................ 20 0 4 0.50 2 1 1 0 0 0 0 0 0 0 0 0 0 0
............................TTTGATACAGCGAGAGAGACATGTAAG................................................................................................ 27 0 6 0.50 3 0 3 0 0 0 0 0 0 0 0 0 0 0
.............................................GACGTGTAAGTGTGGTA......................................................................................... 17 2 11 0.45 5 0 0 0 5 0 0 0 0 0 0 0 0 0
............................TTTGATACAGCGAGAGAGACATGTAA................................................................................................. 26 0 7 0.43 3 1 2 0 0 0 0 0 0 0 0 0 0 0
...................................................................TATACGGAATGGAAATTATAGTTTT........................................................... 25 0 5 0.40 2 0 0 0 0 1 0 0 1 0 0 0 0 0
..................................................................TGATACGGAATGGAAATTATAGTTTTC.......................................................... 27 1 5 0.40 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................TATACGGAATGGAAATTATAGTTTTC.......................................................... 26 0 5 0.40 2 0 0 0 0 0 0 0 2 0 0 0 0 0
.......................................................TTTGGTAAATTTTATACGGAATGGT....................................................................... 25 1 8 0.38 3 0 0 0 0 1 0 2 0 0 0 0 0 0
.................................................................TTTATACGGAATGGA....................................................................... 15 0 8 0.38 3 0 0 0 0 3 0 0 0 0 0 0 0 0
.......................................................TTTGGTAAATTTTATACGGAATGGAAC..................................................................... 27 1 8 0.38 3 0 0 0 0 3 0 0 0 0 0 0 0 0
.........................................................TGGGAAATTTTATACGGAATGGAAA..................................................................... 25 1 8 0.38 3 0 0 2 1 0 0 0 0 0 0 0 0 0
...................CACTAACACTTTGATACAGCGATAGAGA........................................................................................................ 28 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................CTAACACTTTGATACAGCGAGAGAG......................................................................................................... 25 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................CTAACACTTTGATACAGCGAGAGAGA........................................................................................................ 26 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................TTATACGGAATGGAAATTATAGTTTCT.......................................................... 27 2 6 0.33 2 0 2 0 0 0 0 0 0 0 0 0 0 0
...................CACTAACACTTTGATCCAGCGAGAGAGA........................................................................................................ 28 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................ACTAACACTTTGATACAGCGAGAGAGA........................................................................................................ 27 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................ACTAACACTTTGATACAGCGAGAGAGACA...................................................................................................... 29 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................GAGAGAGACATGTAAG................................................................................................ 16 0 7 0.29 2 0 0 0 0 2 0 0 0 0 0 0 0 0
............................TTTGATACAGCGAGAGAGACATGT................................................................................................... 24 0 7 0.29 2 0 2 0 0 0 0 0 0 0 0 0 0 0
......................TAACACTTTGATAAAGCGAGAGAGACATG.................................................................................................... 29 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................TTTGGTAAATTTTATACG.............................................................................. 18 0 8 0.25 2 0 0 0 0 2 0 0 0 0 0 0 0 0
...............................................................ATTTTATACGGAATGGAA...................................................................... 18 0 8 0.25 2 0 0 0 0 2 0 0 0 0 0 0 0 0
......................TAACACTTTGATATAGCGAGAGAGACA...................................................................................................... 27 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................TATACGGAATGGAAATTATAGTTTTAAA........................................................ 28 3 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................TGGTAAATTTTATACGGAATGGAC...................................................................... 24 1 8 0.25 2 0 1 0 1 0 0 0 0 0 0 0 0 0
...................CACTAACACTCTGATACAGCGAGA............................................................................................................ 24 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................TAACACTTTGATACCGCGAGAGAGACA...................................................................................................... 27 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................TACTAACACTTTGATACAGCGAGAG........................................................................................................... 25 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................TTTGGTAAATTTTATACGGAATGGAAT..................................................................... 27 1 8 0.25 2 0 0 0 0 1 0 0 1 0 0 0 0 0
...................CACTAACACTTTGATGCAGCGAGAG........................................................................................................... 25 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....CTCCGCACTGGCGTCACTAAC............................................................................................................................. 21 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................TTTATACGGAATGGAAA..................................................................... 17 0 8 0.25 2 0 0 0 0 2 0 0 0 0 0 0 0 0
.........................................................TGGGAAATTTTATACGGAATGGAAAT.................................................................... 26 1 8 0.25 2 0 0 2 0 0 0 0 0 0 0 0 0 0
.....................................................................TACGGAATGGAAATTATAGTTTTCT......................................................... 25 0 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................TTTGGTAAATTTTATACGGAATGGTT...................................................................... 26 2 8 0.25 2 0 0 0 0 1 0 0 1 0 0 0 0 0
......................TAACACTTTGATACACCGAGAGAGACA...................................................................................................... 27 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................TGACACTTTGATACAGCGAGAGAGACA...................................................................................................... 27 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................ACTAACACTTTGATACAGCGAGA............................................................................................................ 23 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................TACGGAATGGAAATTATAGTTTTCTT........................................................ 26 0 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................CTAACACTTTGATACAGCGAGAG........................................................................................................... 23 0 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 1 0
..................................................................TTATACGGAATGGAA...................................................................... 15 0 8 0.25 2 0 0 0 0 2 0 0 0 0 0 0 0 0
......................TAACACTTTGATACAGCGAGATAGACA...................................................................................................... 27 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................TTGGTAAATTTTATACGGAATGGAAAT.................................................................... 27 0 8 0.25 2 0 1 1 0 0 0 0 0 0 0 0 0 0
...................CACTAACACTTTGATACAGCG............................................................................................................... 21 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................CACTAACACTTTGATACAGCGAGAGACACA...................................................................................................... 30 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................CACTAACACTTTGATACAGCGAGAGAT......................................................................................................... 27 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................TGGTAAATTTTATACGGAATGGAAC..................................................................... 25 1 8 0.25 2 0 0 2 0 0 0 0 0 0 0 0 0 0
...................CACTAACACTTTCATACAGCGAGAG........................................................................................................... 25 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................CACTAACACTTTGATACAGCGAGAT........................................................................................................... 25 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................TCACTAACACTTTGATACACCGAGAGA.......................................................................................................... 27 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................AATTTTATACGGAATGGA....................................................................... 18 0 8 0.25 2 0 0 0 0 2 0 0 0 0 0 0 0 0
...................CACTAACACTTTGATATAGCGAGAGA.......................................................................................................... 26 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................CAACACTTTGATACAGCGAGAGAGACA...................................................................................................... 27 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................GACTAACACTTTGATACAGCGAGAGA.......................................................................................................... 26 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................TGATACAGCGAGAGAGACATGTAAGTT.............................................................................................. 27 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................TTATACGGAATGGAAATTATAGTTTTCTT........................................................ 29 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................TAACACTTTGATACAGCGAGAGAGACATGTA.................................................................................................. 31 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................TGGTAAATTTTATACGGAATGGAAT..................................................................... 25 1 8 0.25 2 0 0 2 0 0 0 0 0 0 0 0 0 0
.........................CACTTTGATACAGCGAGAGAGACAT..................................................................................................... 25 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................GTTAATTTTATACGGAA........................................................................... 17 1 10 0.20 2 0 1 0 1 0 0 0 0 0 0 0 0 0
.........................................GAGAGACATGTAAGTTTGGTA......................................................................................... 21 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................TTTGATACAGCGAGAGAGACATGTAAGT............................................................................................... 28 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................AGAGACATGTAAGTTTGGTAA........................................................................................ 21 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................TTATACGGAATGGAATTTATAGTTTTC.......................................................... 27 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................TACGGAATGGAAATTATAGTTTTC.......................................................... 24 0 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................GTATACGGAATGGAAATTATAGTTTTC.......................................................... 27 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................TAACAGTTTGATACAGCGAGAGAGA........................................................................................................ 25 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................TAACACTTTGGTACAGCGAGAGAGA........................................................................................................ 25 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................TAACATTTTGATACAGCGAGAGAGA........................................................................................................ 25 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................TTATACGGAATGGAAATTATAGCTTTC.......................................................... 27 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................TTATACGGAGTGGAAATTATAGTTTT........................................................... 26 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................GAGAGACATGTAAGTTTGGTAAATT..................................................................................... 25 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................TAACACTTTGATACAGCGATAGAGA........................................................................................................ 25 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................TGTAAGTTTGGTAAATTTTATACGGAT........................................................................... 27 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................CGAGAGAGACATGTAAG................................................................................................ 17 0 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................ATTGGTGGTGTTGGA..... 15 0 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................TACAGCGAGAGAGACATGTAAG................................................................................................ 22 0 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...................CACTAACACTTTGATACAA................................................................................................................. 19 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................TTAGACGGAATGGAAATTATAGTTT............................................................ 25 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................TAACACTTTGATACAGCGAG............................................................................................................. 20 0 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................TTATACGGAATGGAAATTATAGGTT............................................................ 25 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................TATACGGAATGGAAATTATAGTTA............................................................ 24 1 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................ATATACGGAATGGAAATTATAGTT............................................................. 24 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................TGTAAGTTTGGTAAATTTTATACGGA............................................................................ 26 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................TTATACGGAATGGTAATTATAGTTT............................................................ 25 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................TAACACTTTGATACAGCGACAGA.......................................................................................................... 23 1 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......TCCGCACTGGCGTCACTAACACTTTGATA.................................................................................................................... 29 1 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................CACTTTGATACAGCGAGAGAGAGATGT................................................................................................... 27 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......TCCGCACTGGCGTCACTAACACTT......................................................................................................................... 24 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................TGATACGGAATGGAAATTATAGTTT............................................................ 25 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................TGTAAGTTTGGAAAATTTTATACGGAA........................................................................... 27 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................CTAAGTTTGGTAAATTTTATACGGAA........................................................................... 26 1 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................TTTGATACAGCGAGAGAGACATATTA................................................................................................. 26 2 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................TTTGATACAGCGAGAGAGACATGA................................................................................................... 24 1 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................TGTAAGTTTGGTAAATT..................................................................................... 17 0 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TGGAAATTATAGTTTTCTTTTTCAGA................................................. 26 0 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GTTTGGTAAATTTTATACGGAAT.......................................................................... 23 0 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................GTTTGGTAAATTTTATACGGAATG......................................................................... 24 0 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................AAGTTTGGTAAATTTTATACGGAA........................................................................... 24 0 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TATAGTTTTATTTTTCAGATT............................................... 21 1 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................TTATAGTTTTCTTTTTCAGATT............................................... 22 0 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................GTTTGGTAAATTTTATACGGAATGGA....................................................................... 26 0 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................GATACAGCGAGAGAGACAT..................................................................................................... 19 0 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................TGGAAATTATAGTTTTCTTTTTCAGATT............................................... 28 0 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................TGATACAGCGAGAGAGACATGTA.................................................................................................. 23 0 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................TATACGGAATGGAAATTATAGT.............................................................. 22 0 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................TGATACAGCGAGAGAGACATG.................................................................................................... 21 0 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................TGTAAGGTTGGTAAATTTTATACGGAA........................................................................... 27 1 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................TTTGGTAAATTTTATACGGAATGGAC...................................................................... 26 1 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................TTTGGTAAATTTTATACGGAATG......................................................................... 23 0 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................TTATACGGAATGGAAATTATA................................................................ 21 0 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................TAAATTTTATACGGAATGGAAAT.................................................................... 23 0 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................TTTGGTAAATTTTATACGGAATGGATT..................................................................... 27 2 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................TTTATACGGAATGGAA...................................................................... 16 0 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................TTTGGTAAATTTTATACGGAATGGC....................................................................... 25 1 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................TTATACGGAATGGAAA..................................................................... 16 0 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................AATGGAAATTATAGTTTT........................................................... 18 0 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................CGGTAAATTTTATACGGAATGGAAAT.................................................................... 26 1 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................TGTTAAATTTTATACGGAATGGAAA..................................................................... 25 1 8 0.13 1 0 0 0 0 0 0 0 0 0 0 1 0 0
................................................................TTTTATACGGAATGGA....................................................................... 16 0 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................TTTTATACGGAATGGAA...................................................................... 17 0 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................TTTTATACGGAATGG........................................................................ 15 0 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................TGGTAAATTTAATACGGAATGGAAAT.................................................................... 26 1 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................TTATACGGAATGGAAAT.................................................................... 17 0 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................TTTATACGGAATGGAAAT.................................................................... 18 0 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................TTTGGTAAACTTTATACGGAATGGA....................................................................... 25 1 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................TTGATACAGCGAGAGAGAA....................................................................................................... 19 1 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.......................................................TTTGGTAAATTTTATACGGAGTGG........................................................................ 24 1 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................TGTGAAATTTTATACGGAATGGAAA..................................................................... 25 2 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................TTTTATACGGAATGGAAA..................................................................... 18 0 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................ATTTTATACGGAATGGAAAT.................................................................... 20 0 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................TGGTAAATTTTATACGGAATCGAAAT.................................................................... 26 1 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................GGGTAAATTTTATACGGAATGGAAAT.................................................................... 26 1 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................TTGGTAAATTTTATACGGAATGGT....................................................................... 24 1 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................TGGTAAATTTTATACGGAATGGACT..................................................................... 25 2 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................TTTGGTAAATTTTATACGGAATGGAAAA.................................................................... 28 1 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................TTTATACGGGATGGAAA..................................................................... 17 1 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................TGTTAAATTTTATACGAAATGGAAAT.................................................................... 26 2 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................TGGTAAATTTTATACGGAATGG........................................................................ 22 0 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................TTTGGTAAGTTTTATACGGAATGGAT...................................................................... 26 2 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................ACAGCGAGAGAGACATGT................................................................................................... 18 0 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................AAATTTTATACGGAATGGAAAT.................................................................... 22 0 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................GGTAAATTTTATACGGAATGGAAAT.................................................................... 25 0 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................TGGTAAATTGTATACGGAATGGAAAT.................................................................... 26 1 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................TTGTAAATTTTATACGGAATGGAAAT.................................................................... 26 1 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................TGGTAAATTTTATACGGAATGGAAATA................................................................... 27 1 8 0.13 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................TGGTAAATTTTATACGGAATGGGA...................................................................... 24 1 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................ATACGGAATGGAAAT.................................................................... 15 0 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................TGTTAAATTTTATACGGAATGGAAAT.................................................................... 26 1 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................TTTGGTAAATTTTATACGGAA........................................................................... 21 0 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................GGTAAATTTTATACGGAATGGA....................................................................... 22 0 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................TGGCAAATTTTATACGGAATGGAAAT.................................................................... 26 1 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................TTTGGTAAATTTTATACGGAATGGAT...................................................................... 26 1 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................TGGTACATTTTATACGGAATGGAACT.................................................................... 26 2 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................TTGGTAAATTTTATACGGAATGGAAA..................................................................... 26 0 8 0.13 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................TGGTAAATTTTATAAGGAATGGAAAT.................................................................... 26 1 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................TGGTAAATTTTATACGGAATG......................................................................... 21 0 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................CTTTATACGGAATGGA....................................................................... 16 1 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................AATGGAAATTATAGTT............................................................. 16 0 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................TTGGTAAATTTTATACGGAA........................................................................... 20 0 9 0.11 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................TTTGGTAAATTTTATACGGAATGAAAAAA................................................................... 29 3 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................GTAAATTTTATACGG............................................................................. 15 0 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................ATGGAAATTATAGTT............................................................. 15 0 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................AATTTTATACGGAATG......................................................................... 16 0 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................ATAATTTTATACGGAATGGA....................................................................... 20 2 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................GTTAATTTTATACGGA............................................................................ 16 1 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................TTTATACGGAATGGC....................................................................... 15 1 11 0.09 1 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................CTTTATACGGAATGGATA..................................................................... 18 2 14 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................ATATAGTTTTATTTTTCAGA................................................. 20 2 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................GTTAATTTTATACGG............................................................................. 15 1 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TGATAAGATCGGTAGT........... 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................TTATACGGAATGGATAA.................................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................TATATACGGAATGGA....................................................................... 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................TCTATACGGAATGGAT...................................................................... 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CCAAAGAGGCGTGTCCGCAGTGATTGTGAAACTATGTCGCTCTCTCTGTACATTCAAACCATTTAAAATATGCCTTACCTTTAATATCAAAAGAAAAAGTCTAAAATCTTTTCTTTATTGATAAACTATTCTAACCACCACAACCTTCGCC
**************************************************......................((((.(((((.......))))).))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 O002
Head
 M053
female body
 M024
male body		 M025
embryo
....AGAGGCGTGACCGCAGTGATTGTGAAAC....................................................................................................................... 28 1 2 45.00 90 71 3 0 15 0 1 0 0 0 0 0 0
......AGGCGTGTCCGCAGTGATTGTGA.......................................................................................................................... 23 0 2 41.00 82 1 79 0 0 0 2 0 0 0 0 0 0
......AGGCGTGACCGCAGTGATTGTGAAAC....................................................................................................................... 26 1 6 34.33 206 151 22 0 30 0 3 0 0 0 0 0 0
......AGGCGTGTCCGCAGTGATTGTGAAAC....................................................................................................................... 26 0 2 20.00 40 26 13 0 0 0 1 0 0 0 0 0 0
.........................................CTCTCTGTACATTCAAACCATTTA...................................................................................... 24 0 5 17.80 89 0 0 82 0 0 0 0 7 0 0 0 0
........................................TCTCTCTGTACATTCAAACCATTTA...................................................................................... 25 0 5 15.40 77 0 0 71 0 0 0 0 6 0 0 0 0
......AGGCGTGACCGCAGTGATTGTGAAACT...................................................................................................................... 27 1 6 14.83 89 63 9 0 14 0 3 0 0 0 0 0 0
.......................................CTCTCTCTGTACATTCAAACCATTTA...................................................................................... 26 0 5 12.40 62 0 0 54 0 0 0 1 7 0 0 0 0
......AGGCGTGACCGCAGTGATTGTGA.......................................................................................................................... 23 1 6 11.50 69 4 61 0 0 0 4 0 0 0 0 0 0
....AGAGGCGTGACCGCAGTGATTGTGAAACT...................................................................................................................... 29 1 2 11.00 22 14 1 0 5 0 2 0 0 0 0 0 0
....AGAGGCGTGTCCGCAGTGATTGTGAAAC....................................................................................................................... 28 0 2 8.00 16 16 0 0 0 0 0 0 0 0 0 0 0
..........................................TCTCTGTACATTCAAACCATTTA...................................................................................... 23 0 5 7.60 38 0 0 37 0 0 0 1 0 0 0 0 0
.........................................CTCTCTGTACATTCAAACCATTTAAA.................................................................................... 26 0 5 7.20 36 0 0 4 0 25 0 0 0 5 2 0 0
.....GAGGCGTGACCGCAGTGATTGTGAAAC....................................................................................................................... 27 1 2 7.00 14 12 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................AAAAGTCTAAAATCTTTTCTTTATTGAT............................. 28 0 1 6.00 6 1 3 0 2 0 0 0 0 0 0 0 0
....AGAGGCGTGACCGCAGTGATTGTGA.......................................................................................................................... 25 1 2 6.00 12 4 8 0 0 0 0 0 0 0 0 0 0
....AGAGGCGTGACCGCAGTGATTGTGAAA........................................................................................................................ 27 1 2 5.50 11 10 0 0 0 0 1 0 0 0 0 0 0
..........................................TCTCTGTACATTCAAACCATTTAAA.................................................................................... 25 0 5 4.80 24 1 0 21 0 0 0 0 2 0 0 0 0
......AGGCGTGACCGCAGTGATTGTGAAA........................................................................................................................ 25 1 6 4.33 26 26 0 0 0 0 0 0 0 0 0 0 0
.......GGCGTGACCGCAGTGATTGTGAAAC....................................................................................................................... 25 1 6 4.17 25 17 4 0 3 0 1 0 0 0 0 0 0
.....GAGGCGTGTCCGCAGTGATTGTGA.......................................................................................................................... 24 0 2 4.00 8 0 8 0 0 0 0 0 0 0 0 0 0
....AGAGGCGTGTCCGCAGTGATTGTGA.......................................................................................................................... 25 0 2 4.00 8 0 8 0 0 0 0 0 0 0 0 0 0
.................................................ACATTCAAACCATTTAAAATATGCC............................................................................. 25 0 6 4.00 24 0 0 0 0 24 0 0 0 0 0 0 0
...........................................CTCTGTACATTCAAACCATTTAAA.................................................................................... 24 0 5 3.60 18 0 0 15 0 0 0 1 0 0 2 0 0
.............................................CTGTACATTCAAACCATTTAAA.................................................................................... 22 0 5 3.20 16 0 0 0 0 15 0 0 1 0 0 0 0
.......GGCGTGTCCGCAGTGATTGTGA.......................................................................................................................... 22 0 2 3.00 6 0 6 0 0 0 0 0 0 0 0 0 0
......................................................................................................AAAATCTTTTCTTTATTGATAAACTATT..................... 28 0 1 3.00 3 0 0 0 1 0 2 0 0 0 0 0 0
......AGGCGTGTCCGCAGTGATTGTGAAACT...................................................................................................................... 27 0 2 3.00 6 5 0 0 1 0 0 0 0 0 0 0 0
.......GGCGTGTCCGCAGTGATTGTGAAAC....................................................................................................................... 25 0 2 2.50 5 2 2 0 1 0 0 0 0 0 0 0 0
.......................TTGTGAAACTATGTCGCTCTCTCTGT...................................................................................................... 26 0 4 2.50 10 0 6 0 1 0 3 0 0 0 0 0 0
.....GAGGCGTGACCGCAGTGATTGTGAAACT...................................................................................................................... 28 1 2 2.50 5 4 0 0 1 0 0 0 0 0 0 0 0
...AAGAGGCGTGACCGCAGTGATTGTGAAAC....................................................................................................................... 29 1 2 2.50 5 4 0 0 0 0 1 0 0 0 0 0 0
......................................................CAAACCATTTAAAATATGCCTTACC........................................................................ 25 0 7 2.00 14 0 0 0 0 14 0 0 0 0 0 0 0
.......AGCGTGTCCGCAGTGATTGTGAAAC....................................................................................................................... 25 1 2 2.00 4 0 3 0 0 0 1 0 0 0 0 0 0
....AGAGGCGTGTCCGCAGTGATTGTGAAACT...................................................................................................................... 29 0 2 2.00 4 3 1 0 0 0 0 0 0 0 0 0 0
..................................................CATTCAAACCATTTAAAATATGCCTT........................................................................... 26 0 6 2.00 12 0 0 0 0 12 0 0 0 0 0 0 0
......................................................CAAACCATTTAAAATATGCC............................................................................. 20 0 7 2.00 14 0 0 0 0 14 0 0 0 0 0 0 0
.......................................TTCTCTCTGTACATTCAAACCATTTA...................................................................................... 26 1 5 1.80 9 0 0 9 0 0 0 0 0 0 0 0 0
..............CCGCAGTGATTGTGAAACTATGTCGC............................................................................................................... 26 0 4 1.75 7 2 0 1 1 0 0 0 3 0 0 0 0
.....GAGGCGTGACCGCAGTGATTGTGA.......................................................................................................................... 24 1 2 1.50 3 0 2 0 1 0 0 0 0 0 0 0 0
...AAGAGGCGTGACCGCAGTGATTGTGA.......................................................................................................................... 26 1 2 1.50 3 0 2 0 1 0 0 0 0 0 0 0 0
......AGGCGTGACCGCAGTGATTGTGAAACTA..................................................................................................................... 28 1 6 1.50 9 5 0 0 2 0 2 0 0 0 0 0 0
......AGGCGTGACCGCAGTGATTGTGAAACTAT.................................................................................................................... 29 1 6 1.50 9 7 0 0 1 0 1 0 0 0 0 0 0
......AGGCGTGTCCGCAGTGATTGTGAAA........................................................................................................................ 25 0 2 1.50 3 3 0 0 0 0 0 0 0 0 0 0 0
.........................GTGAAACTATGTCGCTCTCTCTGT...................................................................................................... 24 0 5 1.40 7 0 3 0 1 0 3 0 0 0 0 0 0
.......................................CTCTCTCTGTACATTCAAACCAT......................................................................................... 23 0 5 1.20 6 0 0 1 0 5 0 0 0 0 0 0 0
...........................................CTCTGTACATTCAAACCATTTA...................................................................................... 22 0 5 1.20 6 0 0 6 0 0 0 0 0 0 0 0 0
...................................................................ATATGCCTTACCTTTAATAT................................................................ 20 0 8 1.13 9 1 0 0 0 0 0 0 0 8 0 0 0
..................................................CATTCAAACCATTTAAAATATGCCTTA.......................................................................... 27 0 6 1.00 6 0 0 0 0 6 0 0 0 0 0 0 0
...AAGAGGCGTGTCCGCAGTGATTGTGA.......................................................................................................................... 26 0 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0
...............................................................................................AAAGTCTAAAATCTTTTCTTTATTGAT............................. 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................CTCTCTCTGTACATTCAAACCATTTAAA.................................................................................... 28 0 5 1.00 5 0 0 5 0 0 0 0 0 0 0 0 0
....AGAGGCGTGACCGCAGTGATTGTGAAACTA..................................................................................................................... 30 1 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0
........................TGTGAAACTATGTCGCTCTCTCTGT...................................................................................................... 25 0 5 1.00 5 0 1 0 2 0 2 0 0 0 0 0 0
.................................................................................................AGTCTAAAATCTTTTCTTTATTGA.............................. 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..........GTGTCCGCAGTGATTGTGAAACTATGT.................................................................................................................. 27 0 2 1.00 2 0 0 0 0 0 0 2 0 0 0 0 0
.....GAGGCGTGTCCGCAGTGATTGTGAAAC....................................................................................................................... 27 0 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0 0
.................................................ACATTCAAACCATTTAAAATATGCCTT........................................................................... 27 0 6 1.00 6 0 0 0 0 6 0 0 0 0 0 0 0
..............................................................................................AAAAGTCTAAAATCTTTTCTTTATTGATA............................ 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................AGTCTAAAATCTTTTCTTTATTGAT............................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
........GCGTGTCCGCAGTGATTGTGAAAC....................................................................................................................... 24 0 2 1.00 2 1 0 0 1 0 0 0 0 0 0 0 0
.....GAGGCGTGACCGCAGTGATTGTGAAA........................................................................................................................ 26 1 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0
............................................TCTGTACATTCAAACCATTTAAA.................................................................................... 23 0 5 1.00 5 0 0 3 0 0 0 0 0 0 0 1 1
.....TTGGCGTGTCCGCAGTGATTGTGA.......................................................................................................................... 24 2 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.....................................................TCAAACCATTTAAAATATGCC............................................................................. 21 0 7 1.00 7 0 0 0 0 7 0 0 0 0 0 0 0
...............................................GTACATTCAAACCATTTAAA.................................................................................... 20 0 6 1.00 6 0 0 0 0 6 0 0 0 0 0 0 0
.....TAGGCGTGTCCGCAGTGATTGTGA.......................................................................................................................... 24 1 2 1.00 2 0 1 0 0 0 1 0 0 0 0 0 0
.........CGTGTCCGCAGTGATTGTGAAACT...................................................................................................................... 24 0 2 1.00 2 0 0 0 0 0 0 2 0 0 0 0 0
.......GGCGTGACCGCAGTGATTGTGAAACT...................................................................................................................... 26 1 6 1.00 6 3 1 0 2 0 0 0 0 0 0 0 0
................................................TACATTCAAACCATTTAAA.................................................................................... 19 0 7 0.86 6 0 0 0 0 6 0 0 0 0 0 0 0
......AGGCGTGACCGCAGTGATTGTGAAACTATGT.................................................................................................................. 31 1 6 0.83 5 2 1 0 2 0 0 0 0 0 0 0 0
.........................................ATCTCTGTACATTCAAACCATTTA...................................................................................... 24 1 5 0.80 4 0 0 4 0 0 0 0 0 0 0 0 0
..................AGTGATTGTGAAACTATGTCGCTCTCT.......................................................................................................... 27 0 4 0.75 3 0 1 0 0 0 2 0 0 0 0 0 0
..................AGTGATTGTGAAACTATGTCGCTCT............................................................................................................ 25 0 4 0.75 3 0 1 0 1 0 1 0 0 0 0 0 0
..............CCGCAGTGATTGTGAAACTATGTCGCT.............................................................................................................. 27 0 4 0.75 3 0 0 0 2 0 0 0 1 0 0 0 0
..........................TGAAACTATGTCGCTCTCTCTGT...................................................................................................... 23 0 5 0.60 3 0 1 0 0 0 2 0 0 0 0 0 0
........................................TCTCTCTGTACATTCAAACCATTTAAA.................................................................................... 27 0 5 0.60 3 0 0 3 0 0 0 0 0 0 0 0 0
.........................................TTCTCTGTACATTCAAACCATTTA...................................................................................... 24 1 5 0.60 3 0 0 1 0 0 0 0 2 0 0 0 0
............................................TCTGTACATTCAAACCATTTA...................................................................................... 21 0 5 0.60 3 0 0 3 0 0 0 0 0 0 0 0 0
...AAGAGGCGTGTCCGCAGTGATTGT............................................................................................................................ 24 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
....AGAGGCGTGACCGCAGTGATTGTGAAT........................................................................................................................ 27 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.....CAGGCGTGTCCGCAGTGATTGTGA.......................................................................................................................... 24 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
....AGAGGCGTAACCGCAGTGATTGTGAAAC....................................................................................................................... 28 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.......GGCGTGACCGCAGTGATTGTGA.......................................................................................................................... 22 1 6 0.50 3 0 2 0 0 0 1 0 0 0 0 0 0
.......AGCGTGTCCGCAGTGATTGTGA.......................................................................................................................... 22 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
...AAGAGGCGTGACCGCAGTGATTGTGAAA........................................................................................................................ 28 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
...........TGTCCGCAGTGATTGTGAAACTATGT.................................................................................................................. 26 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
....AGAGGCGTGACCGCAGTGATTGTGAA......................................................................................................................... 26 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
......AGGCGTGTCCGCAGTGATTGTGAA......................................................................................................................... 24 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
....AGAGGCGTGACCGCAGTGATTGTG........................................................................................................................... 24 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.....GAGGCGTGACCGCAGTGATTGTCA.......................................................................................................................... 24 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
.......GGCGTGTCCGCAGTGATTGTGAAACTA..................................................................................................................... 27 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
.......GGCGTGTCCGCAGTGATTGTGT.......................................................................................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
..........GTGTCCGCAGTGATTGTGAAACTAT.................................................................................................................... 25 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
.....GAGGCGTGTCCGCAGTGATTGTGAAACT...................................................................................................................... 28 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
......AGGCGTGTCCGCAGTGA................................................................................................................................ 17 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
..AAAGAGGCGTGTCCGCAGTGATTGTGAAAC....................................................................................................................... 30 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................TTGTGAAACTATGTCGCTCTCTCTGTAC.................................................................................................... 28 0 4 0.50 2 0 0 0 1 0 1 0 0 0 0 0 0
..AAAGAGGCGTGACCGCAGTGATTGTGA.......................................................................................................................... 27 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
.........CGTGTCCGCAGTGATTGTGAAAC....................................................................................................................... 23 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
........GCGTGACCGCAGTGATTGTGAAAC....................................................................................................................... 24 1 6 0.50 3 1 0 0 2 0 0 0 0 0 0 0 0
....AGAGGCGTGACCGCAGTGATTGTGAAAT....................................................................................................................... 28 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
............GTCCGCAGTGATTGTGAAACTATGTCG................................................................................................................ 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.....GAGGCGTGACCGCAGTGATTGTGAAACTAT.................................................................................................................... 30 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
.....GAGGCGTGACCGCAGTGATTGTGAAACTA..................................................................................................................... 29 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
............GTCCGCAGTGATTGTGAAACTATGT.................................................................................................................. 25 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
....AGAGGCGTGTCCGCAGTGATTGTGAAA........................................................................................................................ 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
....AGAAGCGTGTCCGCAGTGATTGTGAAAC....................................................................................................................... 28 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
......AGGCGTGTCCGCAGTGATTGTGAAACTAT.................................................................................................................... 29 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................AGAAAAAGTCTAAAAT............................................ 16 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
.......CGCGTGTCCGCAGTGATTGTGAAAC....................................................................................................................... 25 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
....AGAGGCGTGTCCGCAGTGATTGTG........................................................................................................................... 24 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................TTTTAATATCAAAATAAAAAGTCT................................................. 24 2 7 0.43 3 0 1 0 2 0 0 0 0 0 0 0 0
........................TGTGAAACTATGTCGCTCTCTCTGTAC.................................................................................................... 27 0 5 0.40 2 0 0 0 0 0 2 0 0 0 0 0 0
..........................................ACTCTGTACATTCAAACCATTTA...................................................................................... 23 1 5 0.40 2 0 0 2 0 0 0 0 0 0 0 0 0
....AGAAGCGTGACCGCAGTGATTGTGAAACT...................................................................................................................... 29 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0
......AGGCGTGACCGCAGTGATTGTGAA......................................................................................................................... 24 1 6 0.33 2 1 1 0 0 0 0 0 0 0 0 0 0
.....................................CGCTCTCTCTGTACATTCAAACCATTTA...................................................................................... 28 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................TATGCCTTACCTTTAATATCAAAAGAAA....................................................... 28 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
................GCAGTGATTGTGAAACTATGTCGCT.............................................................................................................. 25 0 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0
..................AGTGATTATGAAACTATGTCGC............................................................................................................... 22 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
................GCACTGATTGTGAAACTATGTCGC............................................................................................................... 24 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
...............CGCAGTGATTGTGAAACTATGTCGCTC............................................................................................................. 27 0 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................ATGCCTTACTTTTAATATCAAAATAAAA...................................................... 28 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................CGCTCTCTCTGTACATTCAAA............................................................................................. 21 0 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0
...............CGCAGTGATTGTGAAACTATGTCGCT.............................................................................................................. 26 0 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................CAAAAGAAAAAGTCTA................................................ 16 0 9 0.22 2 0 0 0 0 0 0 2 0 0 0 0 0
......................................ACTCTCTCTGTACATTCAAACCATTTA...................................................................................... 27 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
...............CGCAGTGATTGTGAAA........................................................................................................................ 16 0 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0
................GCAGTGATTGTGAAACTATGT.................................................................................................................. 21 0 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0
.......................TTGTGAAACTATGTCGCTCTCTC......................................................................................................... 23 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................ATCTCTGTACATTCAAACCATTTAA..................................................................................... 25 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................TCTCTCTGTACATTCAAACCATTTAC..................................................................................... 26 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................AATCTCTCTGTACATTCAAACCATTTA...................................................................................... 27 2 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................ATCTCTCGGTACATTCAAACCATGTA...................................................................................... 26 3 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0
..........................................TTACTGTACATTCAAACCATTTAAA.................................................................................... 25 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................ACTCTCTCTGTACATTCAAACCATTTAAA.................................................................................... 29 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
....TGAGGCGTGACCGCAGTGATTGTGAAAC....................................................................................................................... 28 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................TCTATCTGTACATTCAAACCATTTA...................................................................................... 25 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................CTTCTCTGTACATTCAAACCATTTA...................................................................................... 25 2 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................AATTCTCTCTGTACATTCAAACCATTTA...................................................................................... 28 3 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0
.........................................CTCTCTGTACATTAAAACCATTTA...................................................................................... 24 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................GTGAAACTATGTCGCTCTCTCTGTA..................................................................................................... 25 0 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................CTCTCTCTGTACATTCAAACCATTTAA..................................................................................... 27 0 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0
..........................................TCTCTGTACATTCAAACCATTTAAAAT.................................................................................. 27 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................CTCTGTACATTCAAACCATTTAAAAT.................................................................................. 26 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................TCTCTCTGTACATTCAAACCATT........................................................................................ 23 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................TCTCTGTACATTCAAACCATTT....................................................................................... 22 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................TCTCTCTGTACATTCAAACCAT......................................................................................... 22 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................ATGTGAAACTATGTCGCTCTCTCTGT...................................................................................................... 26 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0
.......GGCGTGACCGCACTGATTGTGAAACTAT.................................................................................................................... 28 2 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0
......AGGCGTGACCGCAGTGATTTTGAAACT...................................................................................................................... 27 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0
........GCGTGACCGCAGTGATTGTGA.......................................................................................................................... 21 1 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0
......AGGCGTGACCGCAGTGATTGTCAAACT...................................................................................................................... 27 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0
......AGGCGTGACCGCAGTGATTGTGAAACA...................................................................................................................... 27 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................TCTCTCTTTACATTCAAACCATTTA...................................................................................... 25 1 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0
......AGGCGTGACCGCACTGATTGTGA.......................................................................................................................... 23 2 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0
......TGGCGTGACCGCAGTGATTGTGAAAC....................................................................................................................... 26 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0
......AGGCGTGACCGCACTGATTGTGAAACT...................................................................................................................... 27 2 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0
......AGGCGTGACCGCAGTGATTGTGAAAT....................................................................................................................... 26 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0
......AGGCGTGACCGCAGTGATTGT............................................................................................................................ 21 1 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0
.....CAGGCGTGACCGCAGTGATTGTGA.......................................................................................................................... 24 2 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................CTTTTAATATCAAAATAAAAAGTCT................................................. 25 2 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................TTACCTTTAATATCAAAAGAAA....................................................... 22 0 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0 0
.......AGCGTGACCGCAGTGATTGTGAAAC....................................................................................................................... 25 2 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................TTTAATATCAAAATAAAAAGTCT................................................. 23 1 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................ACTATGTCGCTCTCTCTGTACAT.................................................................................................. 23 0 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................TGAAACTATGTCGCTCT............................................................................................................ 17 0 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0
......AGGCGTGACCTCAGTGATTGTGAAAC....................................................................................................................... 26 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0
.......GGCGTGACCGCAGTTATTGTGAAACT...................................................................................................................... 26 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................GAAACTATGTCGCTCTCTCTGTACAT.................................................................................................. 26 0 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................AAATATGCCTTACCTTTAATAT................................................................ 22 0 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0
....................TGATTGTGAAACTATCT.................................................................................................................. 17 1 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0 0
............................................................ATTTAAAATATGCCTTACCTTTAA................................................................... 24 0 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................ATAAAATGCCTTACCTTTAAT.................................................................. 21 2 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................AAAATGTCTAAAATCATTTCGT.................................... 22 3 10 0.10 1 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................AAAATTTTTTCTCTATTGA.............................. 19 2 17 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................CAAAAGAAAAAGTCCA................................................ 16 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 node_28136:10783-10933 - dsi_15555 GGTTTCTCCGCACAGGC----GTCACTAACACTTTGATACAGCGAGAGAGACATGTAAGTTTGGTAAA--TTTTATACGGAATGGA--------------------AA--------------------------TTATAGTTTTCTTTTTCAGATTTTAGAAAA---------GAAATAACTATTTGATAAGATTGGTGGTGTTGGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCGG
droSec2 scaffold_117:8700-8813 - AACTATTTGATA----AGA---TTG-------------------------------------------------------GT--------------------------------------------------------------------------------------------------------------------GGTGTTGGAAGA--------GGTTGGAGATGGATAAATACTTGAAAAGTAAGTACTTTTAATGCAAAC-------------------------------------------------------------------------------------------------------ACTCAAACAGAGCATACT--------------------------------------------------------------CAATAATGCTCTT----------GAG
dm3 chr3R:2917591-2917657 - AATTAATTGGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGTTGGAAGAGCGATTAAGGTTGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G------A-------A------------AAAGTACTAGATATGCTACTTTT----------CAT
droYak3 4:881185-881330 + ACAAATATACA----------------------------------------------AGTTTTGTTCCCCTTGTTTATTGGATGGT--------------------AA--------------------------TAATGTTATTTTTACTTTTAAATTAAAATATTCATGAATCAATCCATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGGCAAAATGTGAGGG-------A------------ATGAAACCACTTACGATACTTTCCATAAAGTACCTA
droEug1 scf7180000409535:9694-9756 - CAAAAATACTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACAGATGACTG---ATGA-------------C---AAC---G---ATCTCAAATTGGTTGGGCAAAAATATTTC
droBia1 scf7180000297238:1436-1556 - AACAATATGAT-----------TTGGTAGTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------TAAACATGGACTGATTCTTGAAAAGTAAGTATTAA----------------------------------------------------------------------------------ATATC-----CGCATATATATTACGTATTTT-------------------------------TATTATG---------------------ATCAG---A-------------AGTATGTATTCGTAAAGAATACTTC
droTak1 scf7180000412817:4506-4595 + AAATATTGGTG-----------TTGGCGGCGTTTCGAAATGGAGAAGAAGAC------------------------------------------------------------------------------TT--------------------------------------------------------------TGAAAGAGCAG-------------------------------------------------------------------------------------------------------------------------------------AGAGC-----------------------------------------------------------------------------------------------A---G---AATATAAAACTTGCGTCCTTAAATATTTT
droEle1 scf7180000491186:70312-70461 + GAAAAATTGTTA----AAA---TTGACGG-------G---------------------------------------------------------------------A-------------------------------------------------------------------------------------------ATTATAAAAAAAACTAT------TAAAAATGGAACGCTTTTTAAAAA-AAGGTATGTTTAATGT-------------------------------------ATTTTACTTTTAT----------------------------------------------------------------------------------------TCCAGGTTAATCAAACTGATCTTCCC-TGCATAAAGG------------------GCCTCTTTTGCAAATACCTT
droRho1 scf7180000762006:11766-11903 + ACACTACTGAC----------------------------------------------ACTTGCGACCCCTTAAAGTATTGGGAGGTATGA------------------------------------------------------TTTTCAAATAA------------------------------------------------------------------------------------------------------------------------------------TTATGACA--AA---------------------------------------CATGTTAAAT---------------------AAGAAATACT------------------TTTTACAGATGACTG---ATGA-------------C---AAC---G---AATTAAAATTGGTTGCAAAAAAATATTTC
droFic1 scf7180000453205:8162-8331 - AAATTCCTTGGA--AGCAAGT--G--------------------------------------------------------GTGGTGCTGGTTGTAGGCGTAGTGC-------------------------------------------------------------------------------------------------------------T------ACAAAATGGATAAGTTTGTAAAAAGTAAGTATTGTTTCAAA-------------------------------------ATGACGCTTTGCATACAAGTGAAAA------------------------TGTATAC--------------ATGCCATGCGTATGTA-----------------TT-----------------------GGTATGC----AAACG---CATTGA--------AAAAGCCGGAATTTA
droKik1 scf7180000300698:10103-10259 + AACAAAAAATT-------------GT-ACT--------------------------------------------------GTGTT---GCTGACAGTCTCAATGACATTT-------------------------------------------------------------------------------------------------------------------------------------------------ATAATAACAAAAGTAAAATTTTTTCCAAAAAATTTGGGCACTAG---------------------------------------AGGGTTAACT---------------------AATTAACACTTATTTC---------------TT-------------------------TGAATACAGGAC---G---CCATGAAAAGTATTGCAAAACAATACTTT
droAna3 scaffold_13266:5365275-5365397 + ATTAACATTTT--------------------------------------------------------------------ATAAGGT--------------------ATTT-------------------------------------------------------------------------------------------------------------------------------------------------TTAATTGAAATCCCGAAATTTTATATAA----------------------------------------------------------------------------------------------------AATTCAATGATTTATTTTATAGATGAGCCCAAATGA-------A------------ATGGAACCTTTCAAAGCTACTGCAAAGCAGTACCTT
droBip1 scf7180000395064:17041-17156 - ATTTACATCACA--ATC----ATTGT-------------------------------------------------------AA------------------------------------------------------TGTTATGTTTTCGTATAACCAAAAAT-------------------------------------------------------------------------ATT-----------------------------------------------------------------------------------------------------------------------TGATCTTTTTT-------------------------------TATAAGCATACCAACAACA----------------GA-----ACAGCCTTTGCAATGCTGTCTAAAAAAGTCTTG
dp5 XR_group8:4293953-4294125 - ATTATTTGGAGA--GGTCGAT--T--------------------------------------------------------GCCACGGAGGAGACTGATCCACTGCTTTGGATAAAAATAAATATAAATATAT--------------------------------------------------------------TTAAATAATAT----------------TAAAAAAAAACAAAAACCTATT---------------------------------------------------------------------------------ATCTTC----------------------------------------------------------------CTATTTTTCAGGTCAACGAAAATGA-------A------------TTCGATTTAGTCAAAATCCTTATGTTCAAATATTTA
droPer2 scaffold_51:17268-17295 - ACTAAAATGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCAAATAAGATTTTA
droWil2 scf2_1100000004884:1208333-1208494 - TGCCAGCCACG-----------TGG-TCCTTC-------------------------ATTTGCGAGCCTCTCTTTTTTTGGAAGGT--------------------AAAT------------ATGAAGAAGTACAT---ATGTATATGTTTTCAAATTTAACGATT----------ATAATTT--------------------------------------TAAGGAAAATTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGTATGATGA---ACCA-------------T---CAA---G---AACTCAAAGATGTTGCAAATAAGTTTTTG
droMoj3 scaffold_6500:28961191-28961298 + AGTTATGTGCA-----------TAA-TATAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-------------TAGCAATGAACAAGTTCTTACA---------------------------------------------------------------------------------GTCCTCTCGTAACT-------------------------------ATTTCACACGGATATAAT----------------------------------------TGTAAGC----C-----------CTTATGAATGGTAAAATAATATTTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GGTTTCTCCGCACAGGC----GTCACTAACACTTTGATACAGCGAGAGAGACATGTAAGTTTGGTAAA--TTTTATACGGAATGGA--------------------AA--------------------------TTATAGTTTTCTTTTTCAGATTTTAGAAAA---------GAAATAACTATTTGATAAGATTGGTGGTGTTGGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................TAACACTTTGATACAGCGAGAGAGACA......................................................................................................................................................................................................................................................................................................................................................................................................................................27440.25161000300102193430000000
.......................CACTAACACTTTGATACAGCGAGAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................26433.5013400000010003130000000
........................................................................TTATACGGAATGGA--------------------AA--------------------------TTATAGTTT............................................................................................................................................................................................................................................................................................................................................25631.3318800010012605720011000
..........................TAACACTTTGATACAGCGAGAGAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................25527.60138000000582245130000000
.....................................................................................................................................................................................TATTTGATAAGATTGGTGGTGTTGGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.....26125.0025000000171700000000
........................................................................TTATACGGAATGGA--------------------AA--------------------------TTATAGTTTTC..........................................................................................................................................................................................................................................................................................................................................27523.801190000009402320000000
.......................CACTAACACTTTGATACAGCGAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................25422.25890000006641900000000
.............................................................TGGTAAA--TTTTATACGGAATGGA--------------------AA--------------------------T....................................................................................................................................................................................................................................................................................................................................................26821.0016800000001474152000000
.............................................................TGGTAAA--TTTTATACGGAATGGA--------------------A................................................................................................................................................................................................................................................................................................................................................................................24816.881350000800845361001000
.......................CACTAACACTTTGATACAGCGAGAGAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................28316.33490000003801100000000
.............................................................TGGTAAA--TTTTATACGGAATGGA--------------------AA--------------------------.....................................................................................................................................................................................................................................................................................................................................................25814.251140001000642460001000
.......................CACTAACACTTTGATACAGCGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................27312.6738000000340400000000
.......................CACTAACACTTTGATACAGCGAGAGAGACA......................................................................................................................................................................................................................................................................................................................................................................................................................................30312.0036000000330300000000
.......................CACTAACACTTTGATACAGCGAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................24411.00440000002821400000000
.......................CACTAACACTTTGATACAGCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2349.5038000000321500000000
........................................................................TTATACGGAATGGA--------------------AA--------------------------TTATAGTTTT...........................................................................................................................................................................................................................................................................................................................................2658.20410000002901110000000
........................................................................TTATACGGAATGGA--------------------AA--------------------------TTATAGTT.............................................................................................................................................................................................................................................................................................................................................2466.50390000002801100000000
...........................................................TTTGGTAAA--TTTTATACGGAATGGA--------------------.................................................................................................................................................................................................................................................................................................................................................................................2585.25420000000240011025000
.......................................................................................................................................................................................TTTGATAAGATTGGTGGTGTTGGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.....2415.00500000031100000000
......................TCACTAACACTTTGATACAGCGAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................2544.7519000000301600000000
......................TCACTAACACTTTGATACAGCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2444.5018000000101700000000
..........................TAACACTTTGATACAGCGAGAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................2363.8323000000941000000000
.............................CACTTTGATACAGCGAGAGAGACA......................................................................................................................................................................................................................................................................................................................................................................................................................................2453.4017000000131300000000
.............................................................TGGTAAA--TTTTATACGGAATGGA--------------------.................................................................................................................................................................................................................................................................................................................................................................................2383.3827000000019071000000
...........................................................TTTGGTAAA--TTTTATACGGAATGGA--------------------A................................................................................................................................................................................................................................................................................................................................................................................2683.3827000000015009003000
.............................CACTTTGATACAGCGAGAGAGACATG....................................................................................................................................................................................................................................................................................................................................................................................................................................2653.0015000000140100000000
.....................................................................................................................................................TCAGATTTTAGAAAA---------GAAATAACTATT..................................................................................................................................................................................................................................................................................................2713.00300000010200000000
.......................................................TAAGTTTGGTAAA--TTTTATACGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................2572.431700000044810000000
.....................................................TGTAAGTTTGGTAAA--TTTTATACGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................2762.331400000081410000000
..........................TAACACTTTGATACAGCGAGAGAGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2642.25900000052200000000
..............................................................................................................................................................................AAATAACTATTTGATAAGATTGGTG....................................................................................................................................................................................................................................................................................2512.00200200000000000000
....................................................................................................................................................TTCAGATTTTAGAAAA---------GAAATAACTAT...................................................................................................................................................................................................................................................................................................2712.00200000020000000000
..........................TAACACTTTGATACAGCGAGAGAGACATG....................................................................................................................................................................................................................................................................................................................................................................................................................................2942.00800000080000000000
...........................................................TTTGGTAAA--TTTTATACGGAATGGA--------------------AA--------------------------.....................................................................................................................................................................................................................................................................................................................................................2781.881500000004106004000
........................................................................TTATACGGAATGGA--------------------AA--------------------------TTATAGTTTTCT.........................................................................................................................................................................................................................................................................................................................................2841.75700000040300000000
..........................TAACACTTTGATACAGCGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................2451.60800000052100000000
...........................................................TTTGGTAAA--TTTTATACGGAATGG......................................................................................................................................................................................................................................................................................................................................................................................................2481.501200000003008010000
......................TCACTAACACTTTGATAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................1861.33800008000000000000
...........................................................TTTGGTAAA--TTTTATACGGAATGGA--------------------AA--------------------------T....................................................................................................................................................................................................................................................................................................................................................2881.251000000004202011000
......................TCACTAACACTTTGATACAGCGAGAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................2741.25500000010400000000
..................................................................AA--TTTTATACGGAATGGA--------------------AA--------------------------.....................................................................................................................................................................................................................................................................................................................................................2081.13900000800001000000
......................................................................................................................................TTATAGTTTTCTTTTTCAGATTTTAGAA.........................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
.......................................................................................................................................TATAGTTTTCTTTTTCAGATTTTAGA..........................................................................................................................................................................................................................................................................................................................2611.00100000000010000000
.................................................................................................................................................................................TAACTATTTGATAAGATTGGTGGTGTTGGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.....3011.00100000001000000000
............................................................................................................................................................TTAGAAAA---------GAAATAACTATTTGATAAGA..........................................................................................................................................................................................................................................................................................2811.00100000010000000000
......................................................................TTTTATACGGAATGGA--------------------AA--------------------------TTATA................................................................................................................................................................................................................................................................................................................................................2381.00800008000000000000
..........................TAACACTTTGATACAGCGAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................2261.00600006000000000000
........................................................................TTATACGGAATGGA--------------------AA--------------------------TTATAGT..............................................................................................................................................................................................................................................................................................................................................2371.00700000070000000000
......................................................................TTTTATACGGAATGGA--------------------AA--------------------------TTATAG...............................................................................................................................................................................................................................................................................................................................................2471.00700007000000000000
.............................................................................................................................................................TAGAAAA---------GAAATAACTATTTGATAAGA..........................................................................................................................................................................................................................................................................................2711.00100000010000000000
......................................................................TTTTATACGGAATGGA--------------------AA--------------------------T....................................................................................................................................................................................................................................................................................................................................................1981.00800000800000000000
....................................................................................................................................................TTCAGATTTTAGAAAA---------GAAATAAC......................................................................................................................................................................................................................................................................................................2411.00100000000100000000
................................TTTGATACAGCGAGAGAGACATGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................2571.00700000010420000000
.........................................................................................................................................TAGTTTTCTTTTTCAGATTTTAGA..........................................................................................................................................................................................................................................................................................................................2411.00100000000010000000
........................................................................................................................................................................................TTGATAAGATTGGTGGTGTTG..............................................................................................................................................................................................................................................................................2111.00100000000000001000
..........................TAACACTTTGATACAGCGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................1961.00600006000000000000
........................................................................TTATACGGAATGGA--------------------AA--------------------------TTA..................................................................................................................................................................................................................................................................................................................................................1981.00800008000000000000
.......................CACTAACACTTTGATACAGCGAGAGAGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2931.00300000030000000000
.............................................................TGGTAAA--TTTTATACGGAATGGA--------------------AA--------------------------A....................................................................................................................................................................................................................................................................................................................................................2680.75600000002020002000
.........................................................................TATACGGAATGGA--------------------AA--------------------------TTATAGTTTTCT.........................................................................................................................................................................................................................................................................................................................................2740.75300000000000012000
......................TCACTAACACTTTGATACAGCGAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................2640.75300000000300000000
.............................CACTTTGATACAGCGAGAGAGACATGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................2850.60300000030000000000
.............................CACTTTGATACAGCGAGAGAGACATGT...................................................................................................................................................................................................................................................................................................................................................................................................................................2750.60300000020100000000
.............................................................TGGTAAA--TTTTATACGGAATGGA--------------------AA--------------------------TTA..................................................................................................................................................................................................................................................................................................................................................2880.50400000010120000000
.........................CTAACACTTTGATACAGCGAGAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................2440.50200000011000000000
............CAGGC----GTCACTAACACTTTGATACAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.50100000000100000000
................C----GTCACTAACACTTTGATACAGCGAGAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................2940.50200000011000000000
.......................CACTAACACTTTGATACAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.50200000010100000000
................................TTTGATACAGCGAGAGAGACATGTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................2760.50300000000300000000
................................TTTGATACAGCGAGAGAGACATGTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................2670.43300000010200000000
.........................................................................TATACGGAATGGA--------------------AA--------------------------TTATAGTTTT...........................................................................................................................................................................................................................................................................................................................................2550.40200000000001010000
.........................................................................TATACGGAATGGA--------------------AA--------------------------TTATAGTTTTC..........................................................................................................................................................................................................................................................................................................................................2650.40200000000000020000
...........................................................TTTGGTAAA--TTTTATACGGAATGGT--------------------.................................................................................................................................................................................................................................................................................................................................................................................2580.38300000000001002000
.......................................................................TTTATACGGAATGGA--------------------.................................................................................................................................................................................................................................................................................................................................................................................1580.38300000000003000000
...........................................................TTTGGTAAA--TTTTATACGGAATGGA--------------------AC--------------------------.....................................................................................................................................................................................................................................................................................................................................................2780.38300000000003000000
.........................CTAACACTTTGATACAGCGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................2530.33100000001000000000
.........................CTAACACTTTGATACAGCGAGAGAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................2630.33100000001000000000
........................................................................TTATACGGAATGGA--------------------AA--------------------------TTATAGTTTCT..........................................................................................................................................................................................................................................................................................................................................2760.33200000000200000000
........................ACTAACACTTTGATACAGCGAGAGAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................2730.33100000000100000000
........................ACTAACACTTTGATACAGCGAGAGAGACA......................................................................................................................................................................................................................................................................................................................................................................................................................................2930.33100000010000000000
...........................................GAGAGAGACATGTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................1670.29200000000002000000
................................TTTGATACAGCGAGAGAGACATGT...................................................................................................................................................................................................................................................................................................................................................................................................................................2470.29200000000200000000
...........................................................TTTGGTAAA--TTTTATACG............................................................................................................................................................................................................................................................................................................................................................................................................1880.25200000000002000000
...................................................................A--TTTTATACGGAATGGA--------------------A................................................................................................................................................................................................................................................................................................................................................................................1880.25200000000002000000
.........................................................................TATACGGAATGGA--------------------AA--------------------------TTATAGTTTTAAA........................................................................................................................................................................................................................................................................................................................................2840.25100000000000001000
.............................................................TGGTAAA--TTTTATACGGAATGGA--------------------C................................................................................................................................................................................................................................................................................................................................................................................2480.25200000000110000000
...........................................................TTTGGTAAA--TTTTATACGGAATGGA--------------------AT--------------------------.....................................................................................................................................................................................................................................................................................................................................................2780.25200000000001010000
.......................................................................TTTATACGGAATGGA--------------------AA--------------------------.....................................................................................................................................................................................................................................................................................................................................................1780.25200000000002000000
...........................................................................TACGGAATGGA--------------------AA--------------------------TTATAGTTTTCT.........................................................................................................................................................................................................................................................................................................................................2540.25100000000000001000
...........................................................TTTGGTAAA--TTTTATACGGAATGGT--------------------T................................................................................................................................................................................................................................................................................................................................................................................2680.25200000000001010000
........................ACTAACACTTTGATACAGCGAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................2340.25100000010000000000
...........................................................................TACGGAATGGA--------------------AA--------------------------TTATAGTTTTCTT........................................................................................................................................................................................................................................................................................................................................2640.25100000000000010000
.........................CTAACACTTTGATACAGCGAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................2340.25101000000000000000
........................................................................TTATACGGAATGGA--------------------A................................................................................................................................................................................................................................................................................................................................................................................1580.25200000000002000000
............................................................TTGGTAAA--TTTTATACGGAATGGA--------------------AA--------------------------T....................................................................................................................................................................................................................................................................................................................................................2780.25200000001100000000
.......................CACTAACACTTTGATACAGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................2140.25100000000100000000
.......................CACTAACACTTTGATACAGCGAGAGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................2740.25100000010000000000
.............................................................TGGTAAA--TTTTATACGGAATGGA--------------------AC--------------------------.....................................................................................................................................................................................................................................................................................................................................................2580.25200000002000000000
.......................CACTAACACTTTGATACAGCGAGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2540.25100000010000000000
..................................................................AA--TTTTATACGGAATGGA--------------------.................................................................................................................................................................................................................................................................................................................................................................................1880.25200000000002000000
..................................TGATACAGCGAGAGAGACATGTAAGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................2740.25100000010000000000
........................................................................TTATACGGAATGGA--------------------AA--------------------------TTATAGTTTTCTT........................................................................................................................................................................................................................................................................................................................................2940.25100000010000000000
..........................TAACACTTTGATACAGCGAGAGAGACATGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................3140.25100000010000000000
.............................................................TGGTAAA--TTTTATACGGAATGGA--------------------AT--------------------------.....................................................................................................................................................................................................................................................................................................................................................2580.25200000002000000000
.............................CACTTTGATACAGCGAGAGAGACAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2550.20100000010000000000
.............................................GAGAGACATGTAAGTTTGGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................2150.20100000010000000000
................................TTTGATACAGCGAGAGAGACATGTAAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................2850.20100000000100000000
..............................................AGAGACATGTAAGTTTGGTAA........................................................................................................................................................................................................................................................................................................................................................................................................................2150.20100000000001000000
...........................................................................TACGGAATGGA--------------------AA--------------------------TTATAGTTTTC..........................................................................................................................................................................................................................................................................................................................................2450.20100000000000010000
.............................................GAGAGACATGTAAGTTTGGTAAA--TT...................................................................................................................................................................................................................................................................................................................................................................................................................2550.20100000010000000000
.....................................................TGTAAGTTTGGTAAA--TTTTATACGGAT.........................................................................................................................................................................................................................................................................................................................................................................................................2760.17100000010000000000
..........................................CGAGAGAGACATGTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................1760.17100000000001000000
................................................................................................................................................................................................ATTGGTGGTGTTGGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.....1560.17100000000001000000
.....................................TACAGCGAGAGAGACATGTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................2260.17100000000001000000
.......................CACTAACACTTTGATACAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................1960.17100000000100000000
..........................TAACACTTTGATACAGCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2060.17100000000010000000
.........................................................................TATACGGAATGGA--------------------AA--------------------------TTATAGTTA............................................................................................................................................................................................................................................................................................................................................2460.17100000000000001000
.....................................................TGTAAGTTTGGTAAA--TTTTATACGGA..........................................................................................................................................................................................................................................................................................................................................................................................................2660.17100000010000000000
................................TTTGATACAGCGAGAGAGACATGA...................................................................................................................................................................................................................................................................................................................................................................................................................................2470.14100000000100000000
.....................................................TGTAAGTTTGGTAAA--TT...................................................................................................................................................................................................................................................................................................................................................................................................................1770.14100000010000000000
..................................................................................TGGA--------------------AA--------------------------TTATAGTTTTCTTTTTCAGA.................................................................................................................................................................................................................................................................................................................................2670.14100000010000000000
..........................................................GTTTGGTAAA--TTTTATACGGAAT........................................................................................................................................................................................................................................................................................................................................................................................................2370.14100000000001000000
..........................................................GTTTGGTAAA--TTTTATACGGAATG.......................................................................................................................................................................................................................................................................................................................................................................................................2470.14100000000001000000
........................................................AAGTTTGGTAAA--TTTTATACGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................2470.14100000000100000000
......................................................................................................................................TTATAGTTTTCTTTTTCAGATT...............................................................................................................................................................................................................................................................................................................................2270.14100010000000000000
..........................................................GTTTGGTAAA--TTTTATACGGAATGGA--------------------.................................................................................................................................................................................................................................................................................................................................................................................2670.14100000000001000000
...................................GATACAGCGAGAGAGACAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................1970.14100000000001000000
..................................................................................TGGA--------------------AA--------------------------TTATAGTTTTCTTTTTCAGATT...............................................................................................................................................................................................................................................................................................................................2870.14100000000100000000
..................................TGATACAGCGAGAGAGACATGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................2370.14100000000001000000
.........................................................................TATACGGAATGGA--------------------AA--------------------------TTATAGT..............................................................................................................................................................................................................................................................................................................................................2270.14100000000000010000
..................................TGATACAGCGAGAGAGACATG....................................................................................................................................................................................................................................................................................................................................................................................................................................2170.14100000000001000000
...........................................................TTTGGTAAA--TTTTATACGGAATGGA--------------------C................................................................................................................................................................................................................................................................................................................................................................................2680.13100000000000001000
...........................................................TTTGGTAAA--TTTTATACGGAATG.......................................................................................................................................................................................................................................................................................................................................................................................................2380.13100000000000001000
........................................................................TTATACGGAATGGA--------------------AA--------------------------TTATA................................................................................................................................................................................................................................................................................................................................................2180.13100000000100000000
................................................................TAAA--TTTTATACGGAATGGA--------------------AA--------------------------T....................................................................................................................................................................................................................................................................................................................................................2380.13100000001000000000
...........................................................TTTGGTAAA--TTTTATACGGAATGGA--------------------TT--------------------------.....................................................................................................................................................................................................................................................................................................................................................2780.13100000000001000000
.......................................................................TTTATACGGAATGGA--------------------A................................................................................................................................................................................................................................................................................................................................................................................1680.13100000000001000000
...........................................................TTTGGTAAA--TTTTATACGGAATGGC--------------------.................................................................................................................................................................................................................................................................................................................................................................................2580.13100000000001000000
........................................................................TTATACGGAATGGA--------------------AA--------------------------.....................................................................................................................................................................................................................................................................................................................................................1680.13100000000100000000
................................................................................AATGGA--------------------AA--------------------------TTATAGTTTT...........................................................................................................................................................................................................................................................................................................................................1880.13100000000001000000
......................................................................TTTTATACGGAATGGA--------------------.................................................................................................................................................................................................................................................................................................................................................................................1680.13100000000001000000
......................................................................TTTTATACGGAATGGA--------------------A................................................................................................................................................................................................................................................................................................................................................................................1780.13100000000001000000
......................................................................TTTTATACGGAATGG......................................................................................................................................................................................................................................................................................................................................................................................................1580.13100000000001000000
........................................................................TTATACGGAATGGA--------------------AA--------------------------T....................................................................................................................................................................................................................................................................................................................................................1780.13100000010000000000
.......................................................................TTTATACGGAATGGA--------------------AA--------------------------T....................................................................................................................................................................................................................................................................................................................................................1880.13100000000001000000
.................................TTGATACAGCGAGAGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................1980.13100000000000100000
......................................................................TTTTATACGGAATGGA--------------------AA--------------------------.....................................................................................................................................................................................................................................................................................................................................................1880.13100000000001000000
...................................................................A--TTTTATACGGAATGGA--------------------AA--------------------------T....................................................................................................................................................................................................................................................................................................................................................2080.13100000000001000000
............................................................TTGGTAAA--TTTTATACGGAATGGT--------------------.................................................................................................................................................................................................................................................................................................................................................................................2480.13100000000001000000
.............................................................TGGTAAA--TTTTATACGGAATGGA--------------------CT--------------------------.....................................................................................................................................................................................................................................................................................................................................................2580.13100000000010000000
...........................................................TTTGGTAAA--TTTTATACGGAATGGA--------------------AA--------------------------A....................................................................................................................................................................................................................................................................................................................................................2880.13100000000000001000
.............................................................TGGTAAA--TTTTATACGGAATGG......................................................................................................................................................................................................................................................................................................................................................................................................2280.13100000001000000000
......................................ACAGCGAGAGAGACATGT...................................................................................................................................................................................................................................................................................................................................................................................................................................1880.13100000000001000000
.................................................................AAA--TTTTATACGGAATGGA--------------------AA--------------------------T....................................................................................................................................................................................................................................................................................................................................................2280.13100000001000000000
..............................................................GGTAAA--TTTTATACGGAATGGA--------------------AA--------------------------T....................................................................................................................................................................................................................................................................................................................................................2580.13100000001000000000
.............................................................TGGTAAA--TTTTATACGGAATGGA--------------------AA--------------------------TA...................................................................................................................................................................................................................................................................................................................................................2780.13100000000000010000
..........................................................................ATACGGAATGGA--------------------AA--------------------------T....................................................................................................................................................................................................................................................................................................................................................1580.13100000000001000000
...........................................................TTTGGTAAA--TTTTATACGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................2180.13100000000000001000
..............................................................GGTAAA--TTTTATACGGAATGGA--------------------.................................................................................................................................................................................................................................................................................................................................................................................2280.13100000000001000000
...........................................................TTTGGTAAA--TTTTATACGGAATGGA--------------------T................................................................................................................................................................................................................................................................................................................................................................................2680.13100000001000000000
............................................................TTGGTAAA--TTTTATACGGAATGGA--------------------AA--------------------------.....................................................................................................................................................................................................................................................................................................................................................2680.13100000000000010000
.............................................................TGGTAAA--TTTTATACGGAATG.......................................................................................................................................................................................................................................................................................................................................................................................................2190.11100000000001000000
................................................................................AATGGA--------------------AA--------------------------TTATAGTT.............................................................................................................................................................................................................................................................................................................................................1690.11100000000100000000
............................................................TTGGTAAA--TTTTATACGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................2090.11100100000000000000
...............................................................GTAAA--TTTTATACGG...........................................................................................................................................................................................................................................................................................................................................................................................................1590.11100000001000000000
.................................................................................ATGGA--------------------AA--------------------------TTATAGTT.............................................................................................................................................................................................................................................................................................................................................1590.11100000010000000000
..................................................................AA--TTTTATACGGAATG.......................................................................................................................................................................................................................................................................................................................................................................................................16100.10100000000001000000
.......................................................................TTTATACGGAATGGC--------------------.................................................................................................................................................................................................................................................................................................................................................................................15110.09100000000001000000
droSec2
AACTATTTGATA----AGA---TTG-------------------------------------------------------GT--------------------------------------------------------------------------------------------------------------------GGTGTTGGAAGA--------GGTTGGAGATGGATAAATACTTGAAAAGTAAGTACTTTTAATGCAAAC-------------------------------------------------------------------------------------------------------ACTCAAACAGAGCATACT--------------------------------------------------------------CAATAATGCTCTT----------GAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................................TTTTAATGCAAAC-------------------------------------------------------------------------------------------------------ACTCAAACAGAGC.............................................................................................2620.5010010
..........................................................................................................................................................................................................................................................TACTTTTAATGCAAAC-------------------------------------------------------------------------------------------------------ACTCAAACAGAG..............................................................................................2820.5010100
.................GA---TTG-------------------------------------------------------GT--------------------------------------------------------------------------------------------------------------------GGTGTTGGAAGA--------.................................................................................................................................................................................................................................................................1940.2511000
.........................................................................................................................................................................................................GTTGGAAGA--------GGTTGGAGATG......................................................................................................................................................................................................................................................2040.2510001
..............................................................................................................................................................................................................AAGA--------GGTTGGAGATGGATA..................................................................................................................................................................................................................................................1940.2510100
dm3
AATTAATTGGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGTTGGAAGAGCGATTAAGGTTGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G------A-------A------------AAAGTACTAGATATGCTACTTTT----------CATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....ATTGGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGTTGGAAGAGCG......................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................TTAAGGTTGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G------A-------A------------AAAGTACTAGATA.......................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....AATTGGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGTTGGAAGAGCG......................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TTGGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGTTGGAAGAGCGA.....................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....ATTGGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTGTTGGAAGAGCGA.....................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.........................................................................................................................................................................................................GTTGGAAGAGCGATTAAGGTT.............................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................A------------AAAGTACTAGATATGCTAGG................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droYak3
ACAAATATACA----------------------------------------------AGTTTTGTTCCCCTTGTTTATTGGATGGT--------------------AA--------------------------TAATGTTATTTTTACTTTTAAATTAAAATATTCATGAATCAATCCATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGGCAAAATGTGAGGG-------A------------ATGAAACCACTTACGATACTTTCCATAAAGTACCTASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
CAAAAATACTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACAGATGACTG---ATGA-------------C---AAC---G---ATCTCAAATTGGTTGGGCAAAAATATTTCSizeHit CountTotal NormTotal
No Reads
droBia1
AACAATATGAT-----------TTGGTAGTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------TAAACATGGACTGATTCTTGAAAAGTAAGTATTAA----------------------------------------------------------------------------------ATATC-----CGCATATATATTACGTATTTT-------------------------------TATTATG---------------------ATCAG---A-------------AGTATGTATTCGTAAAGAATACTTCSizeHit CountTotal NormTotal
No Reads
droTak1
AAATATTGGTG-----------TTGGCGGCGTTTCGAAATGGAGAAGAAGAC------------------------------------------------------------------------------TT--------------------------------------------------------------TGAAAGAGCAG-------------------------------------------------------------------------------------------------------------------------------------AGAGC-----------------------------------------------------------------------------------------------A---G---AATATAAAACTTGCGTCCTTAAATATTTTSizeHit CountTotal NormTotal
No Reads
droEle1
GAAAAATTGTTA----AAA---TTGACGG-------G---------------------------------------------------------------------A-------------------------------------------------------------------------------------------ATTATAAAAAAAACTAT------TAAAAATGGAACGCTTTTTAAAAA-AAGGTATGTTTAATGT-------------------------------------ATTTTACTTTTAT----------------------------------------------------------------------------------------TCCAGGTTAATCAAACTGATCTTCCC-TGCATAAAGG------------------GCCTCTTTTGCAAATACCTTSizeHit CountTotal NormTotal
No Reads
droRho1
ACACTACTGAC----------------------------------------------ACTTGCGACCCCTTAAAGTATTGGGAGGTATGA------------------------------------------------------TTTTCAAATAA------------------------------------------------------------------------------------------------------------------------------------TTATGACA--AA---------------------------------------CATGTTAAAT---------------------AAGAAATACT------------------TTTTACAGATGACTG---ATGA-------------C---AAC---G---AATTAAAATTGGTTGCAAAAAAATATTTCSizeHit CountTotal NormTotal
No Reads
droFic1
AAATTCCTTGGA--AGCAAGT--G--------------------------------------------------------GTGGTGCTGGTTGTAGGCGTAGTGC-------------------------------------------------------------------------------------------------------------T------ACAAAATGGATAAGTTTGTAAAAAGTAAGTATTGTTTCAAA-------------------------------------ATGACGCTTTGCATACAAGTGAAAA------------------------TGTATAC--------------ATGCCATGCGTATGTA-----------------TT-----------------------GGTATGC----AAACG---CATTGA--------AAAAGCCGGAATTTASizeHit CountTotal NormTotal
No Reads
droKik1
AACAAAAAATT-------------GT-ACT--------------------------------------------------GTGTT---GCTGACAGTCTCAATGACATTT-------------------------------------------------------------------------------------------------------------------------------------------------ATAATAACAAAAGTAAAATTTTTTCCAAAAAATTTGGGCACTAG---------------------------------------AGGGTTAACT---------------------AATTAACACTTATTTC---------------TT-------------------------TGAATACAGGAC---G---CCATGAAAAGTATTGCAAAACAATACTTTSizeHit CountTotal NormTotal
No Reads
droAna3
ATTAACATTTT--------------------------------------------------------------------ATAAGGT--------------------ATTT-------------------------------------------------------------------------------------------------------------------------------------------------TTAATTGAAATCCCGAAATTTTATATAA----------------------------------------------------------------------------------------------------AATTCAATGATTTATTTTATAGATGAGCCCAAATGA-------A------------ATGGAACCTTTCAAAGCTACTGCAAAGCAGTACCTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCTTTCAAAGCTACTGCAAAGC........2514.004130000
................................................................................................................................................................................................................................................................................................................................................................................................................................TGA-------A------------ATGGAACCTTTCAAAGCTACTGC.............2713.003120000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACCTTTCAAAGCTACTGCAAAGCAG......2911.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................ATGA-------A------------ATGGAACCTTTCAAAGCTACTG..............2711.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCAAAGCTACTGCAAAGCAG......2311.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTTTCAAAGCTACTGCAAAG.........2311.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAAAGCTACTGCAAAGCAGTACCTT2811.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCCCAAATGA-------A------------ATGGAACCT...........................2511.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACCTTTCAAAGCTACTGCAAAGC........2711.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCTTTCAAAGCTACTGCAAA..........2311.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................AGATGAGCCCAAATGA-------A------------ATGGAACC............................2511.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGCCCAAATGA-------A------------ATGGAACC............................2411.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTTCAAAGCTACTGCAAAGCAGTACC..2811.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................GA-------A------------ATGGAACCTTTCAAAGCTACTGC.............2611.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCTTTCAAAGCTACTGCAAAGCA.......2611.001100000
droBip1
ATTTACATCACA--ATC----ATTGT-------------------------------------------------------AA------------------------------------------------------TGTTATGTTTTCGTATAACCAAAAAT-------------------------------------------------------------------------ATT-----------------------------------------------------------------------------------------------------------------------TGATCTTTTTT-------------------------------TATAAGCATACCAACAACA----------------GA-----ACAGCCTTTGCAATGCTGTCTAAAAAAGTCTTGSizeHit CountTotal NormTotal
No Reads
dp5
ATTATTTGGAGA--GGTCGAT--T--------------------------------------------------------GCCACGGAGGAGACTGATCCACTGCTTTGGATAAAAATAAATATAAATATAT--------------------------------------------------------------TTAAATAATAT----------------TAAAAAAAAACAAAAACCTATT---------------------------------------------------------------------------------ATCTTC----------------------------------------------------------------CTATTTTTCAGGTCAACGAAAATGA-------A------------TTCGATTTAGTCAAAATCCTTATGTTCAAATATTTASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
ACTAAAATGTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCAAATAAGATTTTASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TGCCAGCCACG-----------TGG-TCCTTC-------------------------ATTTGCGAGCCTCTCTTTTTTTGGAAGGT--------------------AAAT------------ATGAAGAAGTACAT---ATGTATATGTTTTCAAATTTAACGATT----------ATAATTT--------------------------------------TAAGGAAAATTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGTATGATGA---ACCA-------------T---CAA---G---AACTCAAAGATGTTGCAAATAAGTTTTTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---G---AACTCAAAGATGTTGCAAATAAGT.....2711.00101000
...........................................................TTGCGAGCCTCTCTTTTTTTGGAAGG......................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
.............................TTC-------------------------ATTTGCGAGCCTCTCT..................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
......................TGG-TCCTTC-------------------------ATTTGCGAGCCTCTCT..................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
droMoj3
AGTTATGTGCA-----------TAA-TATAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-------------TAGCAATGAACAAGTTCTTACA---------------------------------------------------------------------------------GTCCTCTCGTAACT-------------------------------ATTTCACACGGATATAAT----------------------------------------TGTAAGC----C-----------CTTATGAATGGTAAAATAATATTTASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................................................................................................TGAACAAGTTCTTACA---------------------------------------------------------------------------------GTCCTCTCG..............................................................................................................................................2531.675500000
...................................................................................................................................................................................................................................TGAACAAGTTCTTACA---------------------------------------------------------------------------------GTCCTCTCGTA............................................................................................................................................2731.334300010
...................................................................................................................................................................................................................................TGAACAAGTTCTTACA---------------------------------------------------------------------------------GTCCTCTCGTAA...........................................................................................................................................2831.003300000
...................................................................................................................................................................................................................................TGAACAAGTTCTTACA---------------------------------------------------------------------------------GTCCTCTC...............................................................................................................................................2430.331100000
...................................................................................................................................................................................................................................TGAACAAGTTCTTACA---------------------------------------------------------------------------------GTCCTCTCGTAAA..........................................................................................................................................2930.331100000
................................................................................................................................................................................................................................CAATGAACAAGTTCTTACA---------------------------------------------------------------------------------GTCCTCT................................................................................................................................................2630.331100000
................................................................................................................................................................................................................................CAATGAACAAGTTCTTACA---------------------------------------------------------------------------------GTCCTC.................................................................................................................................................2530.331100000
...................................................................................................................................................................................................................................TGAACAAGTTCTTACA---------------------------------------------------------------------------------GTCCTCTCGT.............................................................................................................................................2630.331100000
.................................................................................................................................................................................................................................AATGAACAAGTTCTTACA---------------------------------------------------------------------------------GTCCTC.................................................................................................................................................2430.331100000
....................................................................................................................................................................................................................................GAACAAGTTCTTACA---------------------------------------------------------------------------------GTCCTCTCG..............................................................................................................................................2430.331100000

Generated: 05/19/2015 at 03:58 PM