ID:

dsi_15544

 Coordinate:

3r:25049538-25049687 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.4 -10.4 -10.3

Flybase annnotation

exon [3r_25049688_25050051_-]; five_prime_UTR [3r_25049688_25050051_-]; intron [3r_25046568_25049687_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATAAAAGTGATAAGAGCACGTTAACCCGTTCCCGTTACAGCTGAATAACGGTAAAAATAACTGCACACCCATCCCAACCGATTATCAGAAATCAGGCTCAAAGACAAAGTCTGGAATTCAATGGAAGTCACCTAATGATTATGTGACTTTTCGCTTTGTGGTGAAAGAGATCAGAATCCATTAAAACTATATAATATATGTACATGCATATGTAGGATCTAGAATATGAAAACATAAGTGCTTAAATCGA
*******************************************************************************************************************************.....(((((......((((((((((((....)))).))))).))).....)))))....*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
.....................................................................................................................................................................AGAGATCAGAATCCATTAAAAC............................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0
....................................................................................................................................................................................................................TAGGATCTAGAATATGAAAAC................. 21 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................TCACCTAATGATTATGTGACT...................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0
......................................................................................................................................................................................................TGTACATGCATATGTAGGATCTAGAATA........................ 28 0 1 1.00 1 0 0 0 1 0 0 0
......................................................................................................................................ATGATTATGTGACTTTTCGCTTTGT........................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0
........................................................................................AAATCAGGCTCCAAGA.................................................................................................................................................. 16 1 2 0.50 1 0 0 0 0 0 1 0
........................................................................................................................................................................................................................ATCTAGGATATGAAACC................. 17 2 20 0.20 4 0 0 0 0 0 0 4
........................................................................................................................................................................................................................ATCTAGGATATGAAAC.................. 16 2 20 0.15 3 0 0 0 0 0 0 3
...................................................................................................................................................................................................................GTAGCATCTAGAATA........................ 15 1 9 0.11 1 0 0 0 0 0 1 0
.............................................................................CCGATTGTCAGAATTGAGG.......................................................................................................................................................... 19 3 15 0.07 1 1 0 0 0 0 0 0
........................................................................................................CACAGACTGGAATTCA.................................................................................................................................. 16 2 20 0.05 1 0 1 0 0 0 0 0

Anti-sense strand reads

TATTTTCACTATTCTCGTGCAATTGGGCAAGGGCAATGTCGACTTATTGCCATTTTTATTGACGTGTGGGTAGGGTTGGCTAATAGTCTTTAGTCCGAGTTTCTGTTTCAGACCTTAAGTTACCTTCAGTGGATTACTAATACACTGAAAAGCGAAACACCACTTTCTCTAGTCTTAGGTAATTTTGATATATTATATACATGTACGTATACATCCTAGATCTTATACTTTTGTATTCACGAATTTAGCT
***************************************************************.....(((((......((((((((((((....)))).))))).))).....)))))....******************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 M023
head
 O001
Testis
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 M025
embryo
............................................................................................................CAGAGCTTAAGTTACCTTCAGTGGAT.................................................................................................................... 26 1 1 4.00 4 1 3 0 0 0 0 0 0 0
..................................................................................................................................GGATTACTAATACACTGAAAAGCGA............................................................................................... 25 0 1 3.00 3 3 0 0 0 0 0 0 0 0
...............................................................................................................AGCTTAAGTTACCTTCAGTGGATTACT................................................................................................................ 27 1 1 3.00 3 3 0 0 0 0 0 0 0 0
................................................................................................................................................................................AGGTAATTTTGATATATTATATACATGT.............................................. 28 0 1 3.00 3 1 2 0 0 0 0 0 0 0
..........................................................................................................TTCAGAGCTTAAGTTACCTTCAGT........................................................................................................................ 24 1 1 2.00 2 2 0 0 0 0 0 0 0 0
.............................................................................................TCCGAGTTTCTGTTTCAGACC........................................................................................................................................ 21 0 1 2.00 2 0 0 0 1 1 0 0 0 0
.......................................................................AGGGTTGGCTAATAGTCTTTAGT............................................................................................................................................................ 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................TAGGGTTGGCTAATAGTCTTTAGT............................................................................................................................................................ 24 0 1 2.00 2 0 2 0 0 0 0 0 0 0
.....................ATTGGGCAAGGGCAATGTCGACTTAT........................................................................................................................................................................................................... 26 0 1 2.00 2 1 1 0 0 0 0 0 0 0
.............................................................................................................AGAGCTTAAGTTACCTTCAGTGGATT................................................................................................................... 26 1 1 2.00 2 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................AAGCGAAACACCACTTTCTCTAGTCTT.......................................................................... 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0
...............CGTGCAATTGGGCAAGGGCAATGTCGACT.............................................................................................................................................................................................................. 29 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.......................................................................AGGGTTGGCTAATAGTCTTTAGTCCGAGT...................................................................................................................................................... 29 0 1 2.00 2 2 0 0 0 0 0 0 0 0
............................................................................TGGCTAATAGTCTTTAGTCCGAGTTT.................................................................................................................................................... 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0
.......................TGGGCAAGGGCAATGTCGACTTAT........................................................................................................................................................................................................... 24 0 1 2.00 2 0 1 1 0 0 0 0 0 0
.......................TGGGCAAGGGCAATGTCGACTTATTGC........................................................................................................................................................................................................ 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0
..............................................................................................................GAGCTTAAGTTACCTTCAGTGGATT................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................GGATTACTAATACACTGAAAAGCGAA.............................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................................................................TTCAGAGCTTAATTTACCTTCAGTGGAT.................................................................................................................... 28 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................GGATTACTAATACACTGAAAAGCG................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................CTAGTCTTAGGTAATTTTGATATATT........................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................GAGTCTGTAGTGCGAGTTTCTGT................................................................................................................................................ 23 3 1 1.00 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................AGTCTTAGGTAATTTTGATATATTAT...................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................AGGTAATTTTGATATATTATATACAT................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................CTCTAGTCTTAGGTAATTTTGATAT........................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...............................................................................................................AGCTTAAGTTACCTTCAGTGGATTAC................................................................................................................. 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................ATACATCCTAGATCTTATACTTTTGTTT.............. 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................................................TGGCTAATAGTCTTTAGTCCGAGT...................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................CGTGTGGGTAGGGTTGGCTAA....................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................TTTCTGTTTCAGAGCTTAAGTTAC............................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................AGAGCTTAAGTTACCTTCAGTGGATTACT................................................................................................................ 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................CGAAACACCACTTTCTCTAGTCTTAGGT...................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................ACATGTACGTATACATCCTAGATCTTAT........................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................AGCGAAACACCACTTTCTCTAGTCTTAGGT...................................................................... 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................GGTAGGGTTGGCTAATAGTCTT................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................TGGCTAATAGTCTTTAGTCCGAGTT..................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................AGCGAAACACCACTTTCTCTAGTCTT.......................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................AGTCTTTAGTCCGAGTTCCTGTTT.............................................................................................................................................. 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................................................GGTAGGGTTGGCTAATAGTCT................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................TAGTCTTAGGTAATTTTGATATATT........................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................................................GGTAGGGTTGGCTAATAGTCTTT............................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................CTCTAGTCTTAGGTAATTTTGAT............................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................ATTTTGATATATTATATACATGTACGT.......................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................GGCTAATAGTCTTTAGTCCGAGTTT.................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................CCCGAGTTTCTGTTTCAGACC........................................................................................................................................ 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0
.................................................................GTGGGTAGGGTTGGCTAATAGTCTT................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................ATATTATATACATGTACGTAT........................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................CAGAGCTTAAGTTACCTTCAGTGGATT................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................GTCTTAGGTAATTTTGATATA.......................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................ACATGTACGTATACATCCTAGATCTT.......................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................TTCAGAGCTTAAGTTACCTTCAGTGGAT.................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................TAATAGTCTTTAGTCCGAGTTTCTGTTT.............................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................TGATAGTCTTTAGTCCGAGTTTCT.................................................................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................GCCGAGTTTCTGTTTCAGACC........................................................................................................................................ 21 1 2 0.50 1 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................TCTACATGCTAGATCATATA....................... 20 3 4 0.25 1 0 0 0 1 0 0 0 0 0
..............................................................CGTGTTGTTAGGGTTGGC.......................................................................................................................................................................... 18 2 5 0.20 1 0 0 1 0 0 0 0 0 0
............................................................AACGTGTTGTTAGGGTTGGC.......................................................................................................................................................................... 20 3 8 0.13 1 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................TACATGCTAGATCATATATT..................... 20 3 11 0.09 1 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................AGGTAATTTCGATATGTT........................................................ 18 2 15 0.07 1 0 0 0 0 0 0 0 1 0
..........................................................................................................................................................AAACACCACTAGCGCTAGTC............................................................................ 20 3 16 0.06 1 0 1 0 0 0 0 0 0 0
....................................TGTCGTCTTATTGCCCT..................................................................................................................................................................................................... 17 2 17 0.06 1 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................TCTACATGCTAGATCATAT........................ 19 3 19 0.05 1 0 0 0 0 0 0 0 0 1
...............................................................GTGTTGTTAGGGTTGGC.......................................................................................................................................................................... 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0
.....................................................................GTAGGGTTGGCTCATAA.................................................................................................................................................................... 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................TGAAGAGCGAAACAC.......................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 1 0
.............................................................CCGTGTTGTTAGGGTTGGC.......................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:25049488-25049737 - dsi_15544 ATAAAAG------TGATAA-----GAGCACGTTAACCC-GTTCCCGTTACAG-CTGAATAACGGTAAAAATAACTGCACACCCA---TCCCAACCGA-TT-ATCAGAAATCAGGCTCAAAG----ACAAAGTCTGGAATTCAATGGAAGT----------------------CACCTAATGATTATGTGACTTTTC-G------------------CTT---TGTGGTGAAAGAGATCAGAATCCAT-TAAA-ACTATATAATATATGTACATGCAT--ATGTAGGAT----------C-------------------------------------TAGAA------------TATGAA----A----ACATAA----------------GTGCTTAAATCGA
droSec2 scaffold_4:4545021-4545270 - ATAAAAG------TGATAA-----GAGCACGTTAACCC-GTTCCCGTTACAG-CTGAATAACGGTAAAAATAACTGCACACCTA---TCCCAACCGA-TT-ATCAGAAATCAGGCTCAAAG----ACAAAGTCTGGAATTCAATGGAAGT----------------------CACCTTATGATTATGTGACATTTC-G------------------CTT---TGTGGTGAAAGAGATCAGAATCCAT-TAAA-ACTATATAATATATGTACATGCGT--ATGTAGGAT----------C-------------------------------------TAGAA------------TATGAA----A----ACATAA----------------GTGCTTAAATCGA
dm3 chr3R:25694059-25694304 - ATAAAAG------TGATAA-----GAGCACGTTAACCC-GTTCCTGTTACAG-CTGAATAACGGTAAAAATAACTGCACACCCA---TCCCAACCGA-TT-ATCTGAAATCGGGCTCGAAG----ACAAAGTCTGGTATTTAATGGCAGC----------------------CACCTAATGATTATGTGACATTTC-G------------------CTT---TGTGGTGAAAGAGATCCTAATCCAT-TAAA-ACTATATACTATATGCATGA------ATGTAGGAT----------C-------------------------------------TAGAA------------GATGAA----A----ACATAA----------------GTGCTTAAATCGA
droEre2 scaffold_4820:2306749-2306982 + ATACAAG------TGATAA-----GAGCACGTTAACCT-GTTCCCGTTGCAG-CTCAATAACGGTAAAAATAATA-----------------A-CGG-TTAAACAGGAATCGGGCTTAAAG----ATAAATTCTGGCATTTAAAGAAAGA--------------------GCCACTAAATGATTATGTGACAATTC-G------------------CTT---TGTGGTGAAAGAGATCTGAATAAAG-TAAA-ACT-TATAATATATGTAGAAG------CGTAGGTT----------C-------------------------------------TCGAAG-----------TCTGAA----A----ACATAA----------------GTGTTGCAATCGA
droYak3 3R:20770691-20770951 + ATAAAAG------TGATAA-----GAGCACGTTAACCC-GTTCCCGTTGCAG-CTGCATAACGGTAAAAATAACTGCACACCCA---TCCCAACCGA-TTTCACAGGAATCGGGTTTAAAG----ACAAAGTCTGGCATTTAATGGCAAT-------CACTCGTGCCAAAGCCACTAAATGATTATGTGACAATTC-G------------------CTT---TGTGGTGAAAGAGATGTGAATCCAT-TTAA-ACT-TATAATATATGTACATG------TGTAGGTT----------C-------------------------------------TAGAAG-----------TCTGAA----A----ACATAA----------------GTGTTTC-ATCAA
droEug1 scf7180000409555:169281-169475 - ATAAAAT------TGATAA-----GAGCACGTTAACCC-GTTTCAGCTGCATGCTAAATTACGGTAAAAATAACTGCATTATAT---TCCAGAC-GACTTCCA----------------------------------------------------------------------------TAATCATGTGACGTTTTTA------------------TTT---CGTGCTTAAAAATGACAAAATCAA--AGAA-ACAACGAACTGTAT-----T--ATTTATTCTTCGTCTAT--GTTTC-------------------------------------TTA------------------------------AATAT----------------GTGTATAATATTA
droBia1 scf7180000302113:1706966-1707162 + ATAAAAG------TGATAA-----GGGCACGTTAACCT-------GCCGCAAACCAAAATACGGTAAAAATAACTGCATAATAATA-ACCGAACCGA-TTTCACA--------------------ACAAAGCCTGGAAAGCAATGGAAGT-------CCCTAGTACTAGGTGCAC-----------------TTTC--CTGGCATAGAATTAGGG------------------------GAATCAAT-TAAATATAATATC---TAT-----T-------------------AT-------ATATGTGG----------------------------------------------AGAT----A----ATATA---------------------------TGT
droTak1 scf7180000415765:71382-71680 - ATAAAAT------TGATAA-----GAGCACGTTAACCC-GTTCCTGTGGCAAACGAAATTACGGTAAACATAACTGCATAATAATAATCCGAACCGA-TTTCACAAGAATCGAACTTACAAGCGAACAAAGTCTGGAAAATATTGGAAAT-------CACTAGTACTATGTAAACTATGTGATTATGTGACATTTCTG------------------CAT---TGCGTTGAACAATAACTAAATTGAT-TTAA-ACTATCTATAGTATAGATAA---------------------GTTCCATAT------TATATGACTTT---------TAATTTCTGGAACTG-----AAACAATGAA----ACCAAAAATAA----------------GTTTTAAAATGGA
droEle1 scf7180000491280:1962825-1963053 - ATAAAAT------TGATAA-----GAGCACGTTAACCC-GTTCCTGCTGCAATTCAAATTACGGTAAAAATAACTGCATAATAT---TACGAACCGA-TTTCACAAGAATTGCGCTTAA------ACAAAGTCTGGAATATACAGGAAAT-------CAATTGTG---------CTTTATGATTATGTGACATTTTTA------------------CTTTATTGTGT---------------TCAAT-TAGA-ACTATTTATAATATGTACAT------------------------------------AATGTGA-------------------------------------------------------TTT----G------TGCTGGTATATAAATTGT
droRho1 scf7180000779916:225220-225466 + ATAAAAT------TGATAA-----GAGCACGTTAACCC-GTTCCTGCTGCAATTTAAATTACGGTAAAAATAACTACATAATAA---TCCGAATAGA-TTTCACAAGAATCGAGTTTAA------ACAAAGTCTGAAATACAGTGAAAAT-------TGCTGGTGCTATAGTAACTTTATGATTATGTCACAATTT-A------------------CTA---TAT-----------------------------------ATTT---------------------------------------------TATATGAATTTGTTACGTTGTAACACAAAGAACAG-----GAACAATAAA----CCCAAATATTC----------------GTATATAAATCGT
droFic1 scf7180000453826:900894-901118 + ATAAAGT------TGATAA-----GAGCACGTTAACCT-ATTCCGACTGCAAGCAAA--AACGGTAAAAATAACTGCATAACAA---TGCAAACTAA-TTTCACAAGAACCAAACTATAAA----ACAAAG--------------ATAATGAACAAACAATAATGCTATATATAC------------------TC---------------------CAC---TGCGTTGAAAACAATTTAATTTC----------------------G----AA------CACAAAAT----------T-------------------------------------TCAATT--TCTATCATCAATCTCACTCATCAAA---AA----------------AAGGTTAAGTCGT
droKik1 scf7180000302388:663705-663879 + ATAAAATTGGCTTTGATAA-----AAGCACGTTAACCTCGTACCTGCCGCAAGCTGAATCACGGTAAAAATAACTGCATAATGT---CCC-----GT-T--TACAGATATT--GCATAAAG----AGAAATTTTTA----------------------------------------------------------------------------------------------------------------AA-AAACAATAAA---TAT-----T-------------------AT-------GTATTTCG-------------------------------------------------------CCAGAAATAAATCTATACATCTGGCAGTTTTTAAA----
droAna3 scaffold_13340:20693409-20693590 - ACAAAGGC-----TGATAACTGAAAAGCGCGTTGACCCGGTTACCCCAGCAATCTAAATTACGGTAAAAAT--CTGCACG-------------------------GAAGT----------------------CACGAAAACAAAGGAAAT-------AGCTGG---------------------------AAATTC--CTAGCA-----------G--------------------------TCTCTTTC-AAAAAATTAA---TAT---------------------------TTCCTATAT--TTTATAA-------------------------------------------------------AAGGCAAAGCTC------TACCAGAGCTCAAATTCC
droBip1 scf7180000396413:1703627-1703799 + ACAAAGC------TGATAACTGAACAGCGCGTTGACCCGGTTACTCCAGCAATCTAAATTACGGTAAAAAAAAATAAAACAAAA---TCTGCACGGA-AGTCACGGA-------------------------------AACAAAAGAAAT-------AGCTGG---------------------------AATTTC--CAAGAA-----------G--------------------------TTTCTTTG-AAACAATAAA---TAG---------------------------CTCCCATAT--GTTAT-----------------------------------------------------------------------------------ATTAAATTCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATAAAAG------TGATAA-----GAGCACGTTAACCC-GTTCCCGTTACAG-CTGAATAACGGTAAAAATAACTGCACACCCA---TCCCAACCGA-TT-ATCAGAAATCAGGCTCAAAG----ACAAAGTCTGGAATTCAATGGAAGT----------------------CACCTAATGATTATGTGACTTTTC-G------------------CTT---TGTGGTGAAAGAGATCAGAATCCAT-TAAA-ACTATATAATATATGTACATGCAT--ATGTAGGAT----------C-------------------------------------TAGAA------------TATGAA----A----ACATAA----------------GTGCTTAAATCGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................AGAGATCAGAATCCAT-TAAA-AC....................................................................................................................................................2211.00100000001000000000
..........................................................................................................................................................................................................................................................................................TAGGAT----------C-------------------------------------TAGAA------------TATGAA----A----AC.................................2111.00110000000000000000
.....................................................................................................................................................T----------------------CACCTAATGATTATGTGACT...................................................................................................................................................................................................................2111.00101000000000000000
..........................................................................................................................................................................................................................................................................TGTACATGCAT--ATGTAGGAT----------C-------------------------------------TAGAA------------TA................................................2811.00100000000010000000
..................................................................................................................................................................................ATGATTATGTGACTTTTC-G------------------CTT---TGT..................................................................................................................................................................................2511.00100000000000100000
droSec2
ATAAAAG------TGATAA-----GAGCACGTTAACCC-GTTCCCGTTACAG-CTGAATAACGGTAAAAATAACTGCACACCTA---TCCCAACCGA-TT-ATCAGAAATCAGGCTCAAAG----ACAAAGTCTGGAATTCAATGGAAGT----------------------CACCTTATGATTATGTGACATTTC-G------------------CTT---TGTGGTGAAAGAGATCAGAATCCAT-TAAA-ACTATATAATATATGTACATGCGT--ATGTAGGAT----------C-------------------------------------TAGAA------------TATGAA----A----ACATAA----------------GTGCTTAAATCGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
ATAAAAG------TGATAA-----GAGCACGTTAACCC-GTTCCTGTTACAG-CTGAATAACGGTAAAAATAACTGCACACCCA---TCCCAACCGA-TT-ATCTGAAATCGGGCTCGAAG----ACAAAGTCTGGTATTTAATGGCAGC----------------------CACCTAATGATTATGTGACATTTC-G------------------CTT---TGTGGTGAAAGAGATCCTAATCCAT-TAAA-ACTATATACTATATGCATGA------ATGTAGGAT----------C-------------------------------------TAGAA------------GATGAA----A----ACATAA----------------GTGCTTAAATCGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................................................................................TGTGGTGAAAGAGATCCTAAT................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000
........................................................................................................................................................................................................................CTT---TGTGGTGAAAGAGATCCT...................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000010000
..................................ACCC-GTTCCTGTTACAG-CTGA..........................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TAACCC-GTTCCTGTTACAG-C.............................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......G------TGATAA-----GAGCACGTTAACCC-GTT.........................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000001000000000
..............GATAA-----GAGCACGTTAACCC-GTTCCTGT....................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..........................................................................................................................................................................................................................T---TGTGGTGAAAGAGATCCTAA.................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020
...............ATAA-----GAGCACGTTAACCC-GTT.........................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000
.........................................................................CTGCACACCCA---TCCCAACCGC-.................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................CTGCACACCCA---TCCCAACCGA-.................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
........................................................................................................................................................................................ATGTGACATTTC-G------------------CTT---TGTGG................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................GTAGGAT----------C-------------------------------------TAGAA------------GATGAA----........................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................TTC-G------------------CTT---TGTGGTGAAAGAGA.......................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................A---TCCCAACCGA-TT-ATCTGAAA......................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...AAAG------TGATAA-----GAGCACGTTA.................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...AAAG------TGATAA-----GAGCACGTTAA................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................GCATGA------ATGTAGGAT----------C-------------------------------------TAGA...............................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..............GATAA-----GAGCACGTTAACCC-GTT.........................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.............TGATAA-----GAGCACGTTAACCC-G...........................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..............GATAA-----GAGCACGTTAACCC-GTTCCT......................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................................................................................................................................................................CATGA------ATGTAGGAT----------C-------------------------------------TAGAA------------T.................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................TGTGACATTTC-G------------------CTT---TGTGGT...............................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................GGGCTCGAAG----ACAAAGTC..............................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................TT---TGTGGTGAAAGAGATCCTA..................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................TGTGGTGAAAGAGATCCT...................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...........................................................................................................AATCGGGCTCGAAG----ACAAAGTCTGG...........................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................GTAAAAATAACTGCACACCC................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TGATAA-----GAGCACGTTAACCC-GT..........................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................ACGGTAAAAATAACTGCACACC.................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GATAA-----GAGCACGTTAACCC-GTTCCTGTT...................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................C-GTTCCTGTTACAG-CTGAATAACGC...................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................TTCCTGTTACAG-CTGAATAAC.....................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GAGCACGTTAACCC-GTTCCTGTTAC.................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................TATATACTATATGCATGA------ATGT........................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................CGGGCTCGAAG----ACAAAGT...............................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
....AAG------TGATAA-----GAGCACGTTAACCC-............................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...............................................................................................................................................................................................................................GTGGTGAAAGAGATCCTAATCA..............................................................................................................................................................2211.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TGATAA-----GAGCACGTTAACCC-GTT.........................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..................A-----GAGCACGTTAACCC-GTTCC.......................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................C-G------------------CTT---TGTGGTGAAAGAGA.......................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GATAA-----GAGCACGTTAACCC-GT..........................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
droEre2
ATACAAG------TGATAA-----GAGCACGTTAACCT-GTTCCCGTTGCAG-CTCAATAACGGTAAAAATAATA-----------------A-CGG-TTAAACAGGAATCGGGCTTAAAG----ATAAATTCTGGCATTTAAAGAAAGA--------------------GCCACTAAATGATTATGTGACAATTC-G------------------CTT---TGTGGTGAAAGAGATCTGAATAAAG-TAAA-ACT-TATAATATATGTAGAAG------CGTAGGTT----------C-------------------------------------TCGAAG-----------TCTGAA----A----ACATAA----------------GTGTTGCAATCGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
ATACAAG------TGATAA-----GAGCACGT...................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
...........................CACGTTAACCT-GTTCCCGTTGC.................................................................................................................................................................................................................................................................................................................................................................2211.0010001000
..............GATAA-----GAGCACGTTAACCT-GT..........................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
..............GATAA-----GAGCACGTTAACCT-............................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
..............GATAA-----GAGCACGTTAACCT-GTTCCC......................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
ATACAAG------TGATAA-----GAGCACGTTAACCT-............................................................................................................................................................................................................................................................................................................................................................................2711.0010000010
.........................................................................................................................................................................................................................................................................ATGTAGAAG------CGTAGGTT----------C-------------------------------------T..................................................................1911.0010000100
droYak3
ATAAAAG------TGATAA-----GAGCACGTTAACCC-GTTCCCGTTGCAG-CTGCATAACGGTAAAAATAACTGCACACCCA---TCCCAACCGA-TTTCACAGGAATCGGGTTTAAAG----ACAAAGTCTGGCATTTAATGGCAAT-------CACTCGTGCCAAAGCCACTAAATGATTATGTGACAATTC-G------------------CTT---TGTGGTGAAAGAGATGTGAATCCAT-TTAA-ACT-TATAATATATGTACATG------TGTAGGTT----------C-------------------------------------TAGAAG-----------TCTGAA----A----ACATAA----------------GTGTTTC-ATCAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............ATAA-----GAGCACGTTAACCC-GTTCCCGTTGC.................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
droEug1
ATAAAAT------TGATAA-----GAGCACGTTAACCC-GTTTCAGCTGCATGCTAAATTACGGTAAAAATAACTGCATTATAT---TCCAGAC-GACTTCCA----------------------------------------------------------------------------TAATCATGTGACGTTTTTA------------------TTT---CGTGCTTAAAAATGACAAAATCAA--AGAA-ACAACGAACTGTAT-----T--ATTTATTCTTCGTCTAT--GTTTC-------------------------------------TTA------------------------------AATAT----------------GTGTATAATATTASizeHit CountTotal NormTotal
No Reads
droBia1
ATAAAAG------TGATAA-----GGGCACGTTAACCT-------GCCGCAAACCAAAATACGGTAAAAATAACTGCATAATAATA-ACCGAACCGA-TTTCACA--------------------ACAAAGCCTGGAAAGCAATGGAAGT-------CCCTAGTACTAGGTGCAC-----------------TTTC--CTGGCATAGAATTAGGG------------------------GAATCAAT-TAAATATAATATC---TAT-----T-------------------AT-------ATATGTGG----------------------------------------------AGAT----A----ATATA---------------------------TGTSizeHit CountTotal NormTotal
No Reads
droTak1
ATAAAAT------TGATAA-----GAGCACGTTAACCC-GTTCCTGTGGCAAACGAAATTACGGTAAACATAACTGCATAATAATAATCCGAACCGA-TTTCACAAGAATCGAACTTACAAGCGAACAAAGTCTGGAAAATATTGGAAAT-------CACTAGTACTATGTAAACTATGTGATTATGTGACATTTCTG------------------CAT---TGCGTTGAACAATAACTAAATTGAT-TTAA-ACTATCTATAGTATAGATAA---------------------GTTCCATAT------TATATGACTTT---------TAATTTCTGGAACTG-----AAACAATGAA----ACCAAAAATAA----------------GTTTTAAAATGGASizeHit CountTotal NormTotal
No Reads
droEle1
ATAAAAT------TGATAA-----GAGCACGTTAACCC-GTTCCTGCTGCAATTCAAATTACGGTAAAAATAACTGCATAATAT---TACGAACCGA-TTTCACAAGAATTGCGCTTAA------ACAAAGTCTGGAATATACAGGAAAT-------CAATTGTG---------CTTTATGATTATGTGACATTTTTA------------------CTTTATTGTGT---------------TCAAT-TAGA-ACTATTTATAATATGTACAT------------------------------------AATGTGA-------------------------------------------------------TTT----G------TGCTGGTATATAAATTGTSizeHit CountTotal NormTotal
No Reads
droRho1
ATAAAAT------TGATAA-----GAGCACGTTAACCC-GTTCCTGCTGCAATTTAAATTACGGTAAAAATAACTACATAATAA---TCCGAATAGA-TTTCACAAGAATCGAGTTTAA------ACAAAGTCTGAAATACAGTGAAAAT-------TGCTGGTGCTATAGTAACTTTATGATTATGTCACAATTT-A------------------CTA---TAT-----------------------------------ATTT---------------------------------------------TATATGAATTTGTTACGTTGTAACACAAAGAACAG-----GAACAATAAA----CCCAAATATTC----------------GTATATAAATCGTSizeHit CountTotal NormTotal
No Reads
droFic1
ATAAAGT------TGATAA-----GAGCACGTTAACCT-ATTCCGACTGCAAGCAAA--AACGGTAAAAATAACTGCATAACAA---TGCAAACTAA-TTTCACAAGAACCAAACTATAAA----ACAAAG--------------ATAATGAACAAACAATAATGCTATATATAC------------------TC---------------------CAC---TGCGTTGAAAACAATTTAATTTC----------------------G----AA------CACAAAAT----------T-------------------------------------TCAATT--TCTATCATCAATCTCACTCATCAAA---AA----------------AAGGTTAAGTCGTSizeHit CountTotal NormTotal
No Reads
droKik1
ATAAAATTGGCTTTGATAA-----AAGCACGTTAACCTCGTACCTGCCGCAAGCTGAATCACGGTAAAAATAACTGCATAATGT---CCC-----GT-T--TACAGATATT--GCATAAAG----AGAAATTTTTA----------------------------------------------------------------------------------------------------------------AA-AAACAATAAA---TAT-----T-------------------AT-------GTATTTCG-------------------------------------------------------CCAGAAATAAATCTATACATCTGGCAGTTTTTAAA----SizeHit CountTotal NormTotal
No Reads
droAna3
ACAAAGGC-----TGATAACTGAAAAGCGCGTTGACCCGGTTACCCCAGCAATCTAAATTACGGTAAAAAT--CTGCACG-------------------------GAAGT----------------------CACGAAAACAAAGGAAAT-------AGCTGG---------------------------AAATTC--CTAGCA-----------G--------------------------TCTCTTTC-AAAAAATTAA---TAT---------------------------TTCCTATAT--TTTATAA-------------------------------------------------------AAGGCAAAGCTC------TACCAGAGCTCAAATTCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....GGC-----TGATAACTGAAAAGCGCGTT..................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
droBip1
ACAAAGC------TGATAACTGAACAGCGCGTTGACCCGGTTACTCCAGCAATCTAAATTACGGTAAAAAAAAATAAAACAAAA---TCTGCACGGA-AGTCACGGA-------------------------------AACAAAAGAAAT-------AGCTGG---------------------------AATTTC--CAAGAA-----------G--------------------------TTTCTTTG-AAACAATAAA---TAG---------------------------CTCCCATAT--GTTAT-----------------------------------------------------------------------------------ATTAAATTCCSizeHit CountTotal NormTotal
No Reads

Generated: 05/19/2015 at 05:31 AM