dsi_1554

exon [2l_15329881_15330213_-]; CDS [2l_15329881_15330135_-]; exon [2l_15329709_15329810_-]; CDS [2l_15329709_15329810_-]; intron [2l_15329811_15329880_-]

##################################################----------------------------------------------------------------------################################################## TCTATCGCGCCCCCCTCGACAAGGTCTGCAATGTTTTGGAACCCGTCCTGGTGAGTTGTTGTCGTGGGTATTATGTAATCAAGTTTTTGACCGGAGGAGTATCCGTTTCCCCGCCTGCAGGGCTTCCAGCGCGCGTTCACCGTGCGCTACTGGACCGGAAAGGCCCTGCT ************************************************.....((......(((((....................((.((((......))))..)))))))....))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	SRR553486 Makindu_3 day-old ovaries	M053 female body	M023 head	M024 male body	SRR902008 ovaries	SRR902009 testis	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	GSM343915 embryo	SRR618934 dsim w501 ovaries
......................................................................................................................................GTTCACCGTGCGCTACTG..................	18	0	1	4.00	4	3	0	0	0	1	0	0	0	0	0	0	0
..........................TGCAATGTTTTGGAACCCGTCCTGGGC.....................................................................................................................	27	2	1	4.00	4	0	2	1	0	0	0	0	0	0	1	0	0
..........................TGCAATGTTTTGGAACCCGTCCTGGGCT....................................................................................................................	28	3	1	3.00	3	0	2	0	0	0	0	0	0	0	0	1	0
........................TCTGCAATGTTTTGGAACC...............................................................................................................................	19	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TTCACCGTGCGCTACTGGACCGGAA..........	25	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0
.........................CTGCAATGTTTTGGAACCCGTCCGG........................................................................................................................	25	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................GTGCGCTACTGGACCGGAAAGGCTC....	25	1	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................AATTGGAACGGAAAGGCCCTGC.	22	3	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................TCGAACGGAAAGGCCCTGCT	20	2	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
.....................AGGTCTGCAATGTTTTGGA..................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
..........................TGCAATGTTTTGGAACCCGTCCTGGGTT....................................................................................................................	28	3	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................GAACGGAAAGGCCCTGCT	18	1	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0
.............................AATGTTTTGGAACCCGTCCTGGGCT....................................................................................................................	25	3	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................TGCGCTACTGGACCGGAAAGGCTCTGCT	28	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................CGTGCGCTACTGGACCGGAAAGGCTC....	26	1	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................GTTCACCGTGCGCTACTGGACCGGAA..........	26	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................GTTCACCGTGCGCTACTGGACC..............	22	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
...................CAAGGTCTGCAATGTTTTGGAACCC..............................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
..........................TGCAATGTTTTGGAACCCGTCCTG........................................................................................................................	24	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
..................ACAAGGTCTGCAATGTTTTGGAAC................................................................................................................................	24	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................GTTCACCGTGCGCGACTGTA................	20	2	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0
.......................................................TTGTAGTCGAGGGTATTATTTA.............................................................................................	22	3	6	0.33	2	0	0	0	0	0	0	2	0	0	0	0	0
........................................................................................................................................................GAACGGAAAGGCCCT...	15	1	7	0.29	2	0	0	0	0	0	0	0	2	0	0	0	0
..............................................................................................................CCGCCTGTAAGGCTTCCGGCG.......................................	21	3	4	0.25	1	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................TTCCTCGACGGCAGGGCTTC............................................	20	3	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	1
.........................................................................................................................................................AACGGAAAGGCCCTG..	15	1	9	0.11	1	0	0	0	0	0	0	0	1	0	0	0	0
...................................................GGAGTTGTTGGCGTGGGTTTT..................................................................................................	21	3	10	0.10	1	0	0	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................ACCATGCGCTACTGG.................	15	1	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	1
.................................................GATGAGTTGTTGTCGCG........................................................................................................	17	2	18	0.06	1	0	0	0	0	0	0	0	0	1	0	0	0

AGATAGCGCGGGGGGAGCTGTTCCAGACGTTACAAAACCTTGGGCAGGACCACTCAACAACAGCACCCATAATACATTAGTTCAAAAACTGGCCTCCTCATAGGCAAAGGGGCGGACGTCCCGAAGGTCGCGCGCAAGTGGCACGCGATGACCTGGCCTTTCCGGGACGA ************************************************.....((......(((((....................((.((((......))))..)))))))....))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	M023 head	SRR902009 testis	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries
............................................................................................................................AGGTCGCACGCAAGGGGCA...........................	19	2	1	2.00	2	2	0	0	0	0
......................................CTCGGTTAGGACCACTCAACA...............................................................................................................	21	3	1	1.00	1	0	1	0	0	0
...................................................................................................................................................ATGACCTGGCCTTTCCGAGAC..	21	1	1	1.00	1	0	0	1	0	0
...........................................................................................................................................GGCACGCGGTGATCTGGGCT...........	20	3	3	0.33	1	1	0	0	0	0
..............................................................................................................GGCGGGCGTCCCGGAGGTCGT.......................................	21	3	5	0.20	1	0	0	0	1	0
...........................................GCGGGCCCACTCAAAAACA............................................................................................................	19	3	17	0.06	1	0	0	0	0	1
.......................................................................................................................CCCGGCGGGCGCGCGCA..................................	17	3	20	0.05	1	0	0	0	0	1
...........................................................................................................................................GGCACGCGGTGATCTG...............	16	2	20	0.05	1	1	0	0	0	0
........................................................................................................................CCGAACATCGCGCGCA..................................	16	2	20	0.05	1	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	2l:15329761-15329930 -	dsi_1554	TCTATCGCGCCCCCCTCGACAAGGTCTGCAATGTTTTGGAACCCGTCCTGGTGAGTTGT-TGTC-G---------------TG--GGTATTATGTAATCAA------------------G------TT---TT---------TGAC--C---GGAGGAGTATCCGTTTC-C---C-----CG--CCTGCAGGGCTTCCAGCGCGCGTTCACCGTGCGCTACTGGACCGGAAAGGCCCTGCT
droSec2	scaffold_3:1959569-1959738 -		TCTACCGCGCTCCCCTCGACAAGGTCTGCAATGTTTTGGAACCCGTCCTGGTGAGTTGT-TGTC-G---------------TG--GGTATTATGTAATCAA------------------G------TT---TT---------TGAC--C---AGTGGTGTATCCGTTTC-C---T-----CG--CCTGCAGGGCTTCCAGCGCGCGTTCACCGTGCGCTACTGGACCGGAAAGGCTCTGCT
dm3	chr2L:15750602-15750771 -		TCTACCGCGCTCCCCTCGACAAGGTCTGCAATGTTTTGGAACCCGTCCTGGTGAGTTGT-TGTC-G---------------TG--GGTATTATGTAATCAA------------------G------TT---TT---------TGAC--C---GGAGGAGCATCCGTTTC-C---T-----CG--CCTGCAGGGCTTTCAGCGCGCGTACACCGTGCGCTTCTGGACCGGAAAGGCTCTGCT
droEre2	scaffold_4929:7450129-7450298 -		TCTACCGCGCTCCCCTGGACAAGGTCTGCAATGTTTTGGAGCCCGTCCTGGTGAGCTAT-TGTC-A---------------TG--GGCATTATGTAATCAA------------------G------TT---TT---------TGAC--C---GATTCCGCATGCGTTCC-T---T-----CG--CCTGCAGGGCTTCCAGCGGGCGTTCACCGTGCGCTACTGGACCGGCAAGGCGCTGCT
droYak3	2L:19610507-19610676 +		TCTACCGCGCTCCCCTGGACAAGGTCTGCAATGTTTTGGAGCCCGTCCTGGTAAGTTAT-TGTC-G---------------TG--GGTATTATGTAATCAA------------------G------TT---TT---------TGAC--C---GAAGGAGTATCCGTTCC-C---C-----CG--CCTACAGGGCTTCCAGAGGGCGTTCACCGTGCGCTACTGGACCGGAAAGGCTCTCCT
droEug1	scf7180000409231:602643-602821 -		TCTATCGCGCCCCACTAGACAAGGTCTGCAACGTCTTGGAACCCGTCCTGGTGAGTTAA-AAAC-A---------------TG--G--ATTATGTAATCATAT---CTTTGGGC----AC------TT---TT---------TGAC--C---AGAGGAATAACATCTTC-T---T-----GG--CTTACAGGGCTTCCAGCGGGCATTCACCGTGCGCTACTGGACCGGTAAGGCACTCCT
droBia1	scf7180000302408:1570103-1570272 +		TCTACCGCGCCCCCCTGGACAAGGTGTGCAGCATCTTGGAACCCGCCCTGGTAAGCTAT-CAAC-A---------------TG--GACATTATGTAATCGT------------------G------TG---CC---------GAGC--C---AGAGGAGTAATCATTTC-T---G-----GG--CTTACAGGGCTTCCAGCGGGCATTCACCGTGCGCTACTGGACAGGCAAGGCTCTGCT
droTak1	scf7180000415399:246030-246201 +		TCTATCGCGCCCCCTTGGACAAGGTCGCCAGCGTTTTGGAACCCGTCCTGGTGAGCTAT-CAAC-A---------------TG--GCTGTTATGTAATCATAT---CA-------------------A---AT---------CGTA--T---GGAGGAGTAACCATTTC-T---C-----GG--CTTTCAGGGCTTCCAGCGGGCATTTACCGTGCGCTACTGGACCGGCAAGGCACTCCT
droEle1	scf7180000491028:270372-270543 +		TCTATCGCGCCCCTCTGGACAAGGTGTGCAACGTTTTGGAACCCGTCCTGGTGAGTTAT-TAGC-A---------------CG--CGCATTATGTAATCACTT----------------A------TT---TC---------TGAT--C---GGAGGAGTAACGCTTGC-T---C-----GG--ATTACAGGGCTTCCAGCGGGCATTCACCGTGCGCTACTGGACCGGAAAGGCACTGCT
droRho1	scf7180000769588:11911-12082 -		TCTATCGCGCCCCCTTGGACAAGGTGTGCAACGTTTTGGAACCCGTCCTGGTGAGTTAT-TAAC-A---------------TG--GGCATTATGTAATCACTT----------------A------TT---TC---------CGAT--C---GGAGGAGTAACTCTTGC-T---T-----GG--CTCACAGGGCTTCCAGCGGGCCTTCACCGTGCGCTACTGGACCGGAAAGGCACTCCT
droFic1	scf7180000454017:87709-87893 +		TCTATCGCGCGCCCCTGGACAAGGTAGCCAGCATTTTGGAACCCGCTCTGGTGAGTTAT-AAAC-A-T-------------TA--AGCATTATGTAATCACCC---A------------G-------TTTTGGGTTGATTTTTGAG--C---GAAGGACTTACTCCATC-T---T-----GG--CTTACAGGGCTTCCAGAGGGCCTTCACCGTGCGCTACTGGACCGGCAAGGCACTCCT
droKik1	scf7180000302468:1080341-1080545 +		TCTATCGCGCCCCGCTGGACAAGGTCTGCAACATATTGACGCCTGTCCTGGTGAGTTTACCCGCTG-----A---------GC--CCGCTTATGTAATCAAGCCAAAAACGGGC----TG------AAATGCT--TGATTGGAGGCGGATCCAAAGGAGTAACTGTTGG-TTGCT-----GC--ATTTCAGGGCTTCCAGCGTGCGTACACGGTGCGCTTCTGGACCGGAAAGGCGCTCCT
droAna3	scaffold_12916:612419-612601 +		TCTACCGCTTCCCTCTCGACAAGGTGTGCTCCATCCTGACCCCGGCCCTGGTAAGCTAA-CCGCTG---------------TC--CCCCTTATGTAATCACAA---CAGGTG-CTGAAAG------AT---TT---------TAAT--T---TAATGATGCC----TCG-T---T-----TGTTTCCCCAGGGATTCCAGCGAGCGTTCACAGTGCGATACTGGACGGGAAAGGCTCTCAT
droBip1	scf7180000396554:1673541-1673710 -		TCTACCGTGCCCCCCTCGACAAGGTGTGCTCCATCCTGACCCCGGCCCTGGTAAGCTAT-CCGCTG-----T---------CC--CCCCTTATGTAATCACAAAAT-------------A------TT---TT---------GGTT--T---AATGCTGGAT-CGTTT-----------------CCGCAGGGATTCCAACGTGCGTTCACAGTGCGTTACTGGACCGGAAAGGCTCTCAT
dp5	4_group4:4527529-4527737 -		TCTACCGGGCCCCCCTGGACAAGCTCTGCAACGTTCTAACCCCAGCCCTGGTGAGTAAA-AGTC--GGCCGGGCATCGTCGCCGTCGCATTATGTAATCGCAC---AAATCGGC----AG------ATTTTCTCCTGTTTTTTGGC--T---TTCTAAGTGATTCCTGT-T---C-----TA--CTTTTAGGGCTTCCAGCGCGCCTACACGATACGCTTCTGGACTGGCAAGGCTCTGAT
droPer2	scaffold_93:150264-150472 -		TCTACCGGGCCCCCCTGGACAAGCTCTGCAACGTTCTAACCCCAGCCCTGGTGAGTAAA-AGTC--GGCCGGGCATCGTCGCCGTCGCATTATGTAATCGCAC---AAATCGGC----AC------ATTTTCTCCTGTTTTTTGGC--T---TTCTAAGTGATTCCTGT-T---C-----TA--CTTTTAGGGCTTCCAGCGCGCCTACACGATACGCTTCTGGACTGGCAAGGCTCTGAT
droWil2	scf2_1100000004585:6138055-6138237 -		TCTATCGCGCACCCCTGGACAAATTGTGCAATGTCTTGACACCGGTGCTGGTAAGTTAC-CTCA--GGTTGAGT-TCGTCGTT--GTCATTATGTAATCGTAA---TC------------------------------------AG--A---AAAGGAATTTCATTACAATTG-C-----TT--CTCTTAGGGCTTCCAACGAGCCTACACATTGCGCTTCTGGACCGGCAAGGCTCTGCT
droVir3	scaffold_12723:4470529-4470708 -	dvi_1665	TCTATCGCGCACCCTTGGACAAGGTTTGCAGCGTTTTGACGCCGGCGCTGGTGGGT-----GCA-A---------------TT--TGTGTTATGTAATCGAAAGAA--AA-A-A-----ATGTTAAATTTTGTTCTGT------------------------TAATTTC-C---CTGCTCGT-TTCCCAAGGGCTTCCAACGCGCCTACACGGTGCGCTACTGGACCGGCAAGGCGCTGAT
droMoj3	scaffold_6500:7586739-7586904 +		TATACCGTGCACCCTTGGACGCGGTGTGCAAAGCTCTGACGCCCGCGCTGGTGCGT-----GCA-A---------------TA--ATTGTTATGTAATCGGCAGAA--AA-----------------T--------------------------CAAATTC--AATTCATTTGCA-----ATCTCTCGCAGGGATTCCAGCGTGCCTACACCGTGCGCTACTGGACAGGCAAGGCGCTGAT
droGri2	scaffold_15126:3422653-3422817 -		TCTATCGCGCACCCTTGGACAAGATTTGCAACATTCTGACGCCGGCGCTGGTAGA-------AC-C---------------CA--ATTATTATGTAATCATAT---AAAATG-------------------TT---------TGT---------AAATCTCAACGAATC-C---T-----GA--TTTTTAGGGCTTCCAACGGGCCTACACCGTGCGCTATTGGACAGGAAAGGCGCTGAT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TCTATCGCGCCCCCCTCGACAAGGTCTGCAATGTTTTGGAACCCGTCCTGGTGAGTTGT-TGTC-G---------------TG--GGTATTATGTAATCAA------------------G------TT---TT---------TGAC--C---GGAGGAGTATCCGTTTC-C---C-----CG--CCTGCAGGGCTTCCAGCGCGCGTTCACCGTGCGCTACTGGACCGGAAAGGCCCTGCT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............................................................................................................................................................................................................GTTCACCGTGCGCTACTG..................	18	1	4.00	4	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TGCAATGTTTTGGAACCCGTCCTGGGC............................................................................................................................................................................................	27	1	4.00	4	0	0	0	1	0	0	1	2	0	0	0	0	0	0	0	0	0
..........................TGCAATGTTTTGGAACCCGTCCTGGGCT...........................................................................................................................................................................................	28	1	3.00	3	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0
........................TCTGCAATGTTTTGGAACC......................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TTCACCGTGCGCTACTGGACCGGAA..........	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.....................AGGTCTGCAATGTTTTGGA.........................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TGCAATGTTTTGGAACCCGTCCTGGGTT...........................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................AATGTTTTGGAACCCGTCCTGGGCT...........................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................GTTCACCGTGCGCTACTGGACCGGAA..........	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................GTTCACCGTGCGCTACTGGACC..............	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................CAAGGTCTGCAATGTTTTGGAACCC.....................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TGCAATGTTTTGGAACCCGTCCTG...............................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..................ACAAGGTCTGCAATGTTTTGGAAC.......................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TCTACCGCGCTCCCCTCGACAAGGTCTGCAATGTTTTGGAACCCGTCCTGGTGAGTTGT-TGTC-G---------------TG--GGTATTATGTAATCAA------------------G------TT---TT---------TGAC--C---AGTGGTGTATCCGTTTC-C---T-----CG--CCTGCAGGGCTTCCAGCGCGCGTTCACCGTGCGCTACTGGACCGGAAAGGCTCTGCT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.......................................................................................................................................................................................................................CGCTACTGGACCGGAAAGGCTCTGCT	26	1	3.00	3	1	0	2	0
.......CGCTCCCCTCGACAAGGT........................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0
........................................................................................................................................................................................................................GCTACTGGACCGGAAAGGCT.....	20	1	2.00	2	0	2	0	0
......GCGCTCCCCTCGACAAGGTCTGCA...................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0
..TACCGCGCTCCCCTCGACAAGGTCTG.....................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0
.................GACAAGGTCTGCAATGTTTTGGA.........................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
....................AAGGTCTGCAATGTTTTGG..........................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
..............................ATGTTTTGGAACCCGTCCTG...............................................................................................................................................................................................	20	1	1.00	1	1	0	0	0
.....................................................................................................................................................................................................................TGCGCTACTGGACCGGAAAGG.......	21	1	1.00	1	0	1	0	0
.............................................................................................................................................................................................................GTTCACCGTGCGCTACTGG.................	19	1	1.00	1	1	0	0	0
........................................................................................................................................................................................................................GCTACTGGACCGGAAAGG.......	18	1	1.00	1	0	0	1	0
................................GTTTTGGAACCCGTCCTGGGCT...........................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
..................................................................................................................................................................................................................CCGTGCGCTACTGGACCGGAAAGGCT.....	26	1	1.00	1	1	0	0	0
.....................AGGTCTGCAATGTTTTGGA.........................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................GTGCGCTACTGGACCGGAAAGGCT.....	24	1	1.00	1	1	0	0	0
.....................AGGTCTGCAATGTTTTGGAAC.......................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1
......................GGTCTGCAATGTTTTGGAAC.......................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0
........GCTCCCCTCGACAAGGTCTG.....................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1
.........................................................................................................................................................................................................................CTACTGGACCGGAAAGGCT.....	19	1	1.00	1	1	0	0	0
.......................GTCTGCAATGTTTTGGAACCCGTCC.................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0

dm3

TCTACCGCGCTCCCCTCGACAAGGTCTGCAATGTTTTGGAACCCGTCCTGGTGAGTTGT-TGTC-G---------------TG--GGTATTATGTAATCAA------------------G------TT---TT---------TGAC--C---GGAGGAGCATCCGTTTC-C---T-----CG--CCTGCAGGGCTTTCAGCGCGCGTACACCGTGCGCTTCTGGACCGGAAAGGCTCTGCT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........................................................................................................................................................................................................................GCTTCTGGACCGGAAAGGCT.....	20	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................AGGTCTGCAATGTTTTGGAA........................................................................................................................................................................................................	20	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.....................AGGTCTGCAATGTTTTGGAACC......................................................................................................................................................................................................	22	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TACCGCGCTCCCCTCGACA............................................................................................................................................................................................................................	19	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GGTCTGCAATGTTTTGGA.........................................................................................................................................................................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................ACCCGTCCTGGTGAGTTGT-TG...................................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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............................................................................................................................................................................................................................CTGGACCGGAAAGGCTCT...	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................AGGTCTGCAATGTTTTGGAACCATC...................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...ACCGCGCTCCCCTCGACAAGG.........................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TCTACCGCGCTCCCCTGGACAAGGTCTGCAATGTTTTGGAGCCCGTCCTGGTGAGCTAT-TGTC-A---------------TG--GGCATTATGTAATCAA------------------G------TT---TT---------TGAC--C---GATTCCGCATGCGTTCC-T---T-----CG--CCTGCAGGGCTTCCAGCGGGCGTTCACCGTGCGCTACTGGACCGGCAAGGCGCTGCT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
....................AAGGTCTGCAATGTTTTGGAGCCCGTC..................................................................................................................................................................................................	27	1	25.00	25	0	0	0	0	0	0	25
...................CAAGGTCTGCAATGTTTTGGA.........................................................................................................................................................................................................	21	1	3.00	3	0	0	0	1	2	0	0
..............................ATGTTTTGGAGCCCGTCCTGGG.............................................................................................................................................................................................	22	1	2.00	2	0	0	0	2	0	0	0
..TACCGCGCTCCCCTGGACAAGGTC.......................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
.........................CTGCAATGTTTTGGAGCCCGTCCTGG..............................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................CACCGTGCGCTACTGGACCGGCAAGGC......	27	1	1.00	1	0	1	0	0	0	0	0
.....CGCGCTCCCCTGGACAAG..........................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
......................GGTCTGCAATGTTTTGGAGC.......................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
..................................................GTGAGCTAT-TGTC-A---------------TG--GGCA........................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
......GCGCTCCCCTGGACAAGGTCTG.....................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................TCACCGTGCGCTACTGGACCGGCAAGG.......	27	1	1.00	1	1	0	0	0	0	0	0
.....................AGGTCTGCAATGTTTTGG..........................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
..........................TGCAATGTTTTGGAGCCCGTCCTGG..............................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
...................CAAGGTCTGCAATGTTTTGGAGC.......................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
.................GACAAGGTCTGCAATGTTTTGG..........................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
....................AAGGTCTGCAATGTTTTGGAGC.......................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
.............................................................................................................................................................................................................GTTCACCGTGCGCTACTGGACCGG............	24	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................CGTTCACCGTGCGCTACTGGACCGG............	25	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................GTGCGCTACTGGACCGGCAAGGC......	23	1	1.00	1	0	1	0	0	0	0	0
TCTACCGCGCTCCCCTGGACA............................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................................GTTCACCGTGCGCTACTGGACCGGC...........	25	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................TGCGCTACTGGACCGGCAAGGCGCT...	25	1	1.00	1	1	0	0	0	0	0	0
...........................GCAATGTTTTGGAGCCCGTA..................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
.......................................................................................................................................................................................................GCGGGCGTTCACCGTGCGCTACT...................	23	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................ACCGTGCGCTACTGGACCGGCAAGG.......	25	1	1.00	1	0	0	0	1	0	0	0
TCTACCGCGCTCCCCTGGAC.............................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.............................AATGTTTTGGAGCCCGTCCT................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
...........................GCAATGTTTTGGAGCCCGTCCTGGGC............................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0
................................................................................................................................................................................................................CACCGTGCGCTACTGGACCG.............	20	1	1.00	1	1	0	0	0	0	0	0
TCTACCGCGCTCCCCTGGACAAGGTC.......................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
........GCTCCCCTGGACAAGGTCTGC....................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................GGGCTTCCAGCGGGCGTTCACC.............................	22	1	1.00	1	1	0	0	0	0	0	0
.................GACAAGGTCTGCAATGTTTTGGAGC.......................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................TGCGCTACTGGACCGGCAAGGCGCTGC.	27	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................................GTTCACCGTGCGCTACTGGA................	20	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................CAGCGGGCGTTCACCGTGCGC.......................	21	1	1.00	1	0	0	0	1	0	0	0
...ACCGCGCTCCCCTGGACA............................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
....................AAGGTCTGCAATGTTTTGGAGCCC.....................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
.................GACAAGGTCTGCAATGTTTTGGAGCC......................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0
...................................................................................................................................................................................................................CGTGCGCTACTGGACCGGT...........	19	1	1.00	1	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................TGCGCTACTGGACCGGCAAGGCGC....	24	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................CCGTGCGCTACTGGACCGGCAAG........	23	1	1.00	1	1	0	0	0	0	0	0
..................ACAAGGTCTGCAATGTTTT............................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0

droYak3

TCTACCGCGCTCCCCTGGACAAGGTCTGCAATGTTTTGGAGCCCGTCCTGGTAAGTTAT-TGTC-G---------------TG--GGTATTATGTAATCAA------------------G------TT---TT---------TGAC--C---GAAGGAGTATCCGTTCC-C---C-----CG--CCTACAGGGCTTCCAGAGGGCGTTCACCGTGCGCTACTGGACCGGAAAGGCTCTCCT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
......................................................................................................................................................................................................AGAGGGCGTTCACCGTGCGCTACT...................	24	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.................GACAAGGTCTGCAATGTTTTGG..........................................................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
...........................GCAATGTTTTGGAGCCCGTCCTG...............................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..TACCGCGCTCCCCTGGACAAGGTC.......................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................GAGGGCGTTCACCGTGCGCTA.....................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................TGTTTTGGAGCCCGTCCT................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...ACCGCGCTCCCCTGGACAAGGTCTG.....................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................GGGCTTCCAGAGGGCGTTCACCGTGC.........................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.CTACCGCGCTCCCCTGGA..............................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................GGGCTTCCAGAGGGCGTTCACCGTGCG........................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................CGTGCGCTACTGGACCGGA...........	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......CGCTCCCCTGGACAAGGTCTGCAAT.................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GACCGGAAAGGCTCTCCT	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....................AAGGTCTGCAATGTTTTGGAGC.......................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GCTACTGGACCGGAAAGGCT.....	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................AGAGGGCGTTCACCGTGCGCT......................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................ACAAGGTCTGCAATGTTTTGGAGC.......................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................TCACCGTGCGCTACTGGACCGGAA..........	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................TTCCAGAGGGCGTTCACCGTGCGCTAC....................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................ACAAGGTCTGCAATGTTTTGG..........................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................GCTTCCAGAGGGCGTTCACCGTGC.........................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................ATGTTTTGGAGCCCGTCCTG...............................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........CCCCTGGACAAGGTCTGCAATGTTTTGGA.........................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................CTGCAATGTTTTGGAGCC......................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..TACCGCGCTCCCCTGGACA............................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...................CAAGGTCTGCAATGTTTTGG..........................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................GCTTCCAGAGGGCGTTCACCGT...........................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................AGGGCGTTCACCGTGCGCT......................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0

droEug1

TCTATCGCGCCCCACTAGACAAGGTCTGCAACGTCTTGGAACCCGTCCTGGTGAGTTAA-AAAC-A---------------TG--G--ATTATGTAATCATAT---CTTTGGGC----AC------TT---TT---------TGAC--C---AGAGGAATAACATCTTC-T---T-----GG--CTTACAGGGCTTCCAGCGGGCATTCACCGTGCGCTACTGGACCGGTAAGGCACTCCT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TCTACCGCGCCCCCCTGGACAAGGTGTGCAGCATCTTGGAACCCGCCCTGGTAAGCTAT-CAAC-A---------------TG--GACATTATGTAATCGT------------------G------TG---CC---------GAGC--C---AGAGGAGTAATCATTTC-T---G-----GG--CTTACAGGGCTTCCAGCGGGCATTCACCGTGCGCTACTGGACAGGCAAGGCTCTGCT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TCTATCGCGCCCCCTTGGACAAGGTCGCCAGCGTTTTGGAACCCGTCCTGGTGAGCTAT-CAAC-A---------------TG--GCTGTTATGTAATCATAT---CA-------------------A---AT---------CGTA--T---GGAGGAGTAACCATTTC-T---C-----GG--CTTTCAGGGCTTCCAGCGGGCATTTACCGTGCGCTACTGGACCGGCAAGGCACTCCT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TCTATCGCGCCCCTCTGGACAAGGTGTGCAACGTTTTGGAACCCGTCCTGGTGAGTTAT-TAGC-A---------------CG--CGCATTATGTAATCACTT----------------A------TT---TC---------TGAT--C---GGAGGAGTAACGCTTGC-T---C-----GG--ATTACAGGGCTTCCAGCGGGCATTCACCGTGCGCTACTGGACCGGAAAGGCACTGCT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TCTATCGCGCCCCCTTGGACAAGGTGTGCAACGTTTTGGAACCCGTCCTGGTGAGTTAT-TAAC-A---------------TG--GGCATTATGTAATCACTT----------------A------TT---TC---------CGAT--C---GGAGGAGTAACTCTTGC-T---T-----GG--CTCACAGGGCTTCCAGCGGGCCTTCACCGTGCGCTACTGGACCGGAAAGGCACTCCT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TCTATCGCGCGCCCCTGGACAAGGTAGCCAGCATTTTGGAACCCGCTCTGGTGAGTTAT-AAAC-A-T-------------TA--AGCATTATGTAATCACCC---A------------G-------TTTTGGGTTGATTTTTGAG--C---GAAGGACTTACTCCATC-T---T-----GG--CTTACAGGGCTTCCAGAGGGCCTTCACCGTGCGCTACTGGACCGGCAAGGCACTCCT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TCTATCGCGCCCCGCTGGACAAGGTCTGCAACATATTGACGCCTGTCCTGGTGAGTTTACCCGCTG-----A---------GC--CCGCTTATGTAATCAAGCCAAAAACGGGC----TG------AAATGCT--TGATTGGAGGCGGATCCAAAGGAGTAACTGTTGG-TTGCT-----GC--ATTTCAGGGCTTCCAGCGTGCGTACACGGTGCGCTTCTGGACCGGAAAGGCGCTCCT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TCTACCGCTTCCCTCTCGACAAGGTGTGCTCCATCCTGACCCCGGCCCTGGTAAGCTAA-CCGCTG---------------TC--CCCCTTATGTAATCACAA---CAGGTG-CTGAAAG------AT---TT---------TAAT--T---TAATGATGCC----TCG-T---T-----TGTTTCCCCAGGGATTCCAGCGAGCGTTCACAGTGCGATACTGGACGGGAAAGGCTCTCAT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
....................................................................................................................................................................................................................GTGCGATACTGGACGGGAAAGGCTCTC..	27	1	4.00	4	1	0	0	0	0	3
....................................................................................................................................................................................................................GTGCGATACTGGACGGGAAAGGC......	23	1	2.00	2	1	0	0	0	1	0
....................................................................................................................................................................................................................GTGCGATACTGGACGGGAA..........	19	1	2.00	2	1	0	0	0	0	1
...ACCGCTTCCCTCTCGACAAGGT........................................................................................................................................................................................................................	22	1	2.00	2	1	0	1	0	0	0
..............................................................................................................................................................................................GGGATTCCAGCGAGCGTTCA...............................	20	1	2.00	2	2	0	0	0	0	0
...................................................................................................................................................................................................................AGTGCGATACTGGACGGGA...........	19	1	2.00	2	1	0	1	0	0	0
....................................................................................................................................................................................................................GTGCGATACTGGACGGGAAAGGCT.....	24	1	2.00	2	1	0	0	0	0	1
.CTACCGCTTCCCTCTCGACAAGGC........................................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0
......GCTTCCCTCTCGACAAGGC........................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
................CGACAAGGTGTGCTCCATC..............................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................TTCCAGCGAGCGTTCACA.............................	18	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................CAGTGCGATACTGGACGGGAAA.........	22	1	1.00	1	0	0	0	0	1	0
...........................GCTCCATCCTGACCCCGGCC..................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..........CCCTCTCGACAAGGTGTGCTCCAT...............................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................GTGCGATACTGGACGGGAAAG........	21	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................TGCGATACTGGACGGGAAAG........	20	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................GCGATACTGGACGGGAAA.........	18	1	1.00	1	0	1	0	0	0	0
..............CTCGACAAGGTGTGCTCC.................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0
.................GACAAGGTGTGCTCCATCC.............................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...............TCGACAAGGTGTGCTCCATCCC............................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................AGTGCGATACTGGACGGGAAAG........	22	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................TCACAGTGCGATACTGGACGGGAAA.........	25	1	1.00	1	1	0	0	0	0	0
TCTACCGCTTCCCTCTCGACA............................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................TGGACGGGAAAGGCTCTC..	18	1	1.00	1	0	1	0	0	0	0
.........TCCCTCTCGACAAGGTGTGCTCCATC..............................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................TACTGGACGGGAAAGGCTCTCAT	23	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................AGCGAGCGTTCACAGTGCGATAC....................	23	1	1.00	1	0	0	0	0	0	1
.......................GTGTGCTCCATCCTGACCCCGGCCC.................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................CACAGTGCGATACTGGACGGGAAAGGC......	27	1	1.00	1	0	0	0	0	1	0
..............CTCGACAAGGTGTGCTCCATCCT............................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................ATACTGGACGGGAAAGGCTC....	20	1	1.00	1	0	0	0	0	1	0
....................................................................................................................................................................................................................GTGCGATACTGGACGGGA...........	18	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................CTGGACGGGAAAGGCTCTCAT	21	1	1.00	1	0	0	0	0	0	1
............CTCTCGACAAGGTGTGCTCCATCCT............................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................TTCACAGTGCGATACTGGACGGGAAAG........	27	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................................................................................................AGTGCGATACTGGACGGGAAAGGCTCT...	27	1	1.00	1	0	1	0	0	0	0
.........................GTGCTCCATCCTGACCCC......................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.......................GTGTGCTCCATCCTGACCCC......................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.............TCTCGACAAGGTGTGCTCCATCCTGAC.........................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................GATACTGGACGGGAAAGGCT.....	20	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................AGCGAGCGTTCACAGTGCGATACT...................	24	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................ATTCCAGCGAGCGTTCACA.............................	19	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................CACAGTGCGATACTGGACGGGAAAG........	25	1	1.00	1	1	0	0	0	0	0
..........CCCTCTCGACAAGGTGTGCT...................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0

droBip1

TCTACCGTGCCCCCCTCGACAAGGTGTGCTCCATCCTGACCCCGGCCCTGGTAAGCTAT-CCGCTG-----T---------CC--CCCCTTATGTAATCACAAAAT-------------A------TT---TT---------GGTT--T---AATGCTGGAT-CGTTT-----------------CCGCAGGGATTCCAACGTGCGTTCACAGTGCGTTACTGGACCGGAAAGGCTCTCAT	Size	Hit Count	Total Norm	Total
No Reads

dp5

TCTACCGGGCCCCCCTGGACAAGCTCTGCAACGTTCTAACCCCAGCCCTGGTGAGTAAA-AGTC--GGCCGGGCATCGTCGCCGTCGCATTATGTAATCGCAC---AAATCGGC----AG------ATTTTCTCCTGTTTTTTGGC--T---TTCTAAGTGATTCCTGT-T---C-----TA--CTTTTAGGGCTTCCAGCGCGCCTACACGATACGCTTCTGGACTGGCAAGGCTCTGAT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....................................................................................................................................................................................................................TACGCTTCTGGACTGGCAAGGCTCTGA.	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.CTACCGGGCCCCCCTGGACA............................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................GCCTACACGATACGCTTCTGG.................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................ACGCTTCTGGACTGGCAAGGCT.....	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0
..............CTGGACAAGCTCTGCAACG................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................ACGATACGCTTCTGGACTG.............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................ACACGATACGCTTCTGGACTGGCA..........	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TACGCTTCTGGACTGGCAAGG.......	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............CCTGGACAAGCTCTGCAACGTTCTAACC........................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TACGCTTCTGGACTGGCAAGGCT.....	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................TCTGGACTGGCAAGGCTCT...	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................CTACACGATACGCTTCTGGACTGGCAA.........	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.CTACCGGGCCCCCCTGGACAAGCTC.......................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................................CGATACGCTTCTGGACTGGCA..........	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................ATACGCTTCTGGACTGGCAAGGCTCTG..	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............CCTGGACAAGCTCTGCAACG................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................................GATACGCTTCTGGACTGGCAAGGCT.....	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................ATACGCTTCTGGACTGGCAAGGCT.....	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................GATACGCTTCTGGACTGGCAAG........	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................ATACGCTTCTGGACTGGCAAGGCTC....	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0
....CCGGGCCCCCCTGGACAAGCTCTG.....................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................GATACGCTTCTGGACTGGCAAGG.......	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................CTACACGATACGCTTCTGGACTG.............	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................CGATACGCTTCTGGACTGGCAAGGC......	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................AACGTTCTAACCCCAGCCCTGGGC............................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......GGGCCCCCCTGGACAAGCTCTGCA...................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................CGCTTCTGGACTGGCAAGGCTCT...	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................AAGCTCTGCAACGTTCTAACCC.......................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...ACCGGGCCCCCCTGGACA............................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................CTTCCAGCGCGCCTACACGAT...........................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............CTGGACAAGCTCTGCAACGTT..............................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................CGCTTCTGGACTGGCAAGGCT.....	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TACGCTTCTGGACTGGCAAGGC......	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................CTACACGATACGCTTCTGGA................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........CCCCCTGGACAAGCTCTGCA...................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................CTCTGCAACGTTCTAACCCC......................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
TCTACCGGGCCCCCCTGGACA............................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.CTACCGGGCCCCCCTGGACAAGCT........................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................GATACGCTTCTGGACTGGCAAGGCC.....	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................GCTTCTGGACTGGCAAGGC......	19	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.................GACAAGCTCTGCAACGTTC.............................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....................AGCTCTGCAACGTTCTAACC........................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................CACGATACGCTTCTGGACTGG............	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0
........................................................................................................................................................................................................CGCGCCTACACGATACGCTTCTGGAC...............	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............TGGACAAGCTCTGCAACGTTC.............................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..........................TGCAACGTTCTAACCCCAGCCCTGGGC............................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................CACGATACGCTTCTGGACTGGCAAG........	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................GCCTACACGATACGCTTCTGGACTG.............	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

TCTACCGGGCCCCCCTGGACAAGCTCTGCAACGTTCTAACCCCAGCCCTGGTGAGTAAA-AGTC--GGCCGGGCATCGTCGCCGTCGCATTATGTAATCGCAC---AAATCGGC----AC------ATTTTCTCCTGTTTTTTGGC--T---TTCTAAGTGATTCCTGT-T---C-----TA--CTTTTAGGGCTTCCAGCGCGCCTACACGATACGCTTCTGGACTGGCAAGGCTCTGAT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.........CCCCCCTGGACAAGCTCTGCAACGTT..............................................................................................................................................................................................................	26	1	4.00	4	4	0	0	0	0	0
...................................................................................................................................................................................................................GATACGCTTCTGGACTGGCAAGGCT.....	25	1	4.00	4	0	0	0	0	0	4
...........CCCCTGGACAAGCTCTGCAACGTT..............................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0
.............................................................................................................................................................................................................CTACACGATACGCTTCTGGACT..............	22	1	2.00	2	2	0	0	0	0	0
..........................................................................................................................................................................................................................TTCTGGACTGGCAAGGCT.....	18	1	2.00	2	2	0	0	0	0	0
...................................................................................................................................................................................................................GATACGCTTCTGGACTGGCA..........	20	1	2.00	2	0	0	0	0	0	2
.................GACAAGCTCTGCAACGTTCT............................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
........GCCCCCCTGGACAAGCTCTGC....................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
........................................................................................................................................................................................................................GCTTCTGGACTGGCAAGGCC.....	20	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................GCTTCTGGACTGGCAAGGCT.....	20	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................GCGCCTACACGATACGCTTCTGGACT..............	26	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................CTACACGATACGCTTCTGGA................	20	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................ATACGCTTCTGGACTGGCAAG........	21	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................CGCCTACACGATACGCTTCTGGACT..............	25	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................ACACGATACGCTTCTGGACTGGCAAG........	26	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................GATACGCTTCTGGACTGGCG..........	20	1	1.00	1	1	0	0	0	0	0
...............................................................................................AATCGCAC---AAATCGGC----AC------...................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................TACGCTTCTGGACTGGCAAGGCT.....	23	1	1.00	1	0	0	0	0	1	0
..................................................................................................................................................................................................................CGATACGCTTCTGGACTGGCAAGGCTCT...	28	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................ACGATACGCTTCTGGACT..............	18	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................ACACGATACGCTTCTGGAC...............	19	1	1.00	1	1	0	0	0	0	0

droWil2

TCTATCGCGCACCCCTGGACAAATTGTGCAATGTCTTGACACCGGTGCTGGTAAGTTAC-CTCA--GGTTGAGT-TCGTCGTT--GTCATTATGTAATCGTAA---TC------------------------------------AG--A---AAAGGAATTTCATTACAATTG-C-----TT--CTCTTAGGGCTTCCAACGAGCCTACACATTGCGCTTCTGGACCGGCAAGGCTCTGCT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.............................................................................................................................................................................................................CTACACATTGCGCTTCTGGACC..............	22	1	4.00	4	2	0	0	2	0
........................................................................................................................................................................................................................GCTTCTGGACCGGCAAGGCTCTGCT	25	1	2.00	2	1	0	1	0	0
...............TGGACAAATTGTGCAATGTC..............................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	2
.............................................................................................................................................................................................................CTACACATTGCGCTTCTG..................	18	1	2.00	2	0	0	0	2	0
.............................................................................................................................................................................................................CTACACATTGCGCTTCTGGACCGGC...........	25	1	2.00	2	0	0	1	1	0
..................................CTTGACACCGGTGCTGGGC............................................................................................................................................................................................	19	1	2.00	2	0	0	2	0	0
....................AAATTGTGCAATGTCTTGACACCGGT...................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................TACACATTGCGCTTCTGGACCGGCAAGG.......	28	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................CCTACACATTGCGCTTCTG..................	19	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................................TTGCGCTTCTGGACCGGCAAG........	21	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................................TGCGCTTCTGGACCGGCAAGGCTC....	24	1	1.00	1	1	0	0	0	0
.................................TCTTGACACCGGTGCTGGGC............................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................................TTGCGCTTCTGGACCGGCAAGGCT.....	24	1	1.00	1	1	0	0	0	0
TCTATCGCGCACCCCTGGACAAATTGTG.....................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
.........CACCCCTGGACAAATTGT......................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
................................GTCTTGACACCGGTGCTGGG.............................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................TCTGGACCGGCAAGGCTCTGCC	22	1	1.00	1	1	0	0	0	0
..............................ATGTCTTGACACCGGTGCTGGG.............................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
........GCACCCCTGGACAAATTGT......................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................TCTGGACCGGCAAGGCTCTGC.	21	1	1.00	1	1	0	0	0	0
..............CTGGACAAATTGTGCAATGTC..............................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0
.............................AATGTCTTGACACCGGTGCTGGGC............................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
.....................AATTGTGCAATGTCTTGAC.........................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
..........ACCCCTGGACAAATTGTGCAATGT...............................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
................................GTCTTGACACCGGTGCTG...............................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
...ATCGCGCACCCCTGGACA............................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
...........................GCAATGTCTTGACACCGGTGCTGGG.............................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
..TATCGCGCACCCCTGGACAA...........................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
.............................................................................................................................................................................................................CTACACATTGCGCTTCTGGACCGGCAA.........	27	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................AGCCTACACATTGCGCTTCTGGACCGGCA..........	29	1	1.00	1	0	1	0	0	0
.CTATCGCGCACCCCTGGAC.............................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
.....................AATTGTGCAATGTCTTGACACCGGTGC.................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................................TTGCGCTTCTGGACCGGCAAGGCTC....	25	1	1.00	1	1	0	0	0	0
..................................................................................................................................................................................................TTCCAACGAGCCTACACATTGCGC.......................	24	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................................................................GCTTCTGGACCGGCAAGGCT.....	20	1	1.00	1	0	0	1	0	0
..............................ATGTCTTGACACCGGTGCTG...............................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
....................AAATTGTGCAATGTCTTGA..........................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
.............................AATGTCTTGACACCGGTGCTGGG.............................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
..TATCGCGCACCCCTGGACA............................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................................................................GCTTCTGGACCGGCAAGGCTCT...	22	1	1.00	1	0	0	1	0	0
..............................................................................................................................................................................................................TACACATTGCGCTTCTGGAC...............	20	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................TTCTGGACCGGCAAGGCT.....	18	1	1.00	1	1	0	0	0	0
.....................AATTGTGCAATGTCTTGACACCGGT...................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
..............................ATGTCTTGACACCGGTGCTGGGC............................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0
...........................................................................................................................................................................................................................TCTGGACCGGCAAGGCTCTGCT	22	1	1.00	1	1	0	0	0	0
..................................................GTAAGTTAC-CTCA--GGTTGAGT-TCGTCGTT--............................................................................................................................................................	29	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................................................TCTGGACCGGCAAGGCTC....	18	1	1.00	1	1	0	0	0	0
........GCACCCCTGGACAAATTGTGCA...................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................................................CATTGCGCTTCTGGACCGGCAAGGCT.....	26	1	1.00	1	1	0	0	0	0
...................................TTGACACCGGTGCTGGGC............................................................................................................................................................................................	18	5	0.20	1	0	0	0	1	0

droVir3

TCTATCGCGCACCCTTGGACAAGGTTTGCAGCGTTTTGACGCCGGCGCTGGTGGGT-----GCA-A---------------TT--TGTGTTATGTAATCGAAAGAA--AA-A-A-----ATGTTAAATTTTGTTCTGT------------------------TAATTTC-C---CTGCTCGT-TTCCCAAGGGCTTCCAACGCGCCTACACGGTGCGCTACTGGACCGGCAAGGCGCTGAT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.....................AGGTTTGCAGCGTTTTGACGCCGGCGCT................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CTATCGCGCACCCTTGGACAAGGT........................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GCTACTGGACCGGCAAGGC......	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................GACAAGGTTTGCAGCGTTTTGACGC.......................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................CGCTACTGGACCGGCAAGGCG.....	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................ACTGGACCGGCAAGGCGCT...	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................GTTTTGACGCCGGCGCTGG..............................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................................GTTTTGACGCCGGCGCTG...............................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................TACTGGACCGGCAAGGCGCT...	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................GCCTACACGGTGCGCTACTGGACCGGC...........	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................CGCTACTGGACCGGCAAGGCGCT...	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................GGACAAGGTTTGCAGCGTTTT............................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................AGGTTTGCAGCGTTTTGACGCCGGCGC.................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................GGTGCGCTACTGGACCGGCAAGGC......	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TGGACAAGGTTTGCAGCGTTTTGAC.........................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GCTACTGGACCGGCAAGGCGC....	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................CTACACGGTGCGCTACTGGAC...............	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...ATCGCGCACCCTTGGACA............................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........ACCCTTGGACAAGGTTTGCAGC.................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GCTACTGGACCGGCAAGG.......	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................CGGTGCGCTACTGGACCGGCAAGGCGCT...	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................GCGCTACTGGACCGGCAAGGC......	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TTGCAGCGTTTTGACGCCGGCGCTGGGC............................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................GCCTACACGGTGCGCTACTGGACC..............	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................ACAAGGTTTGCAGCGTTTTGACGC.......................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....CGCGCACCCTTGGACAAGGTTTGCA...................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............CTTGGACAAGGTTTGCAGCGTTTTGA..........................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................GCAGCGTTTTGACGCCGGCGCTG...............................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CTATCGCGCACCCTTGGACAAGGTT.......................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...ATCGCGCACCCTTGGACAAGGTTT......................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TGCAGCGTTTTGACGCCGGCGC.................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TGGACAAGGTTTGCAGCGTTTTGA..........................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...................CAAGGTTTGCAGCGTTTTGACG........................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................TACTGGACCGGCAAGGCGCTG..	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................AAGGTTTGCAGCGTTTTGA..........................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................GCGCTACTGGACCGGCAAGGCGC....	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........CCCTTGGACAAGGTTTGCAGC.................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GTTTGCAGCGTTTTGACGC.......................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

droMoj3

TATACCGTGCACCCTTGGACGCGGTGTGCAAAGCTCTGACGCCCGCGCTGGTGCGT-----GCA-A---------------TA--ATTGTTATGTAATCGGCAGAA--AA-----------------T--------------------------CAAATTC--AATTCATTTGCA-----ATCTCTCGCAGGGATTCCAGCGTGCCTACACCGTGCGCTACTGGACAGGCAAGGCGCTGAT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......GTGCACCCTTGGACGCGGT........................................................................................................................................................................................................................	19	1	3.00	3	1	0	0	0	0	2
........................................................................................................................................................................................................................GCTACTGGACAGGCAAGGCGCT...	22	1	2.00	2	0	0	0	0	0	2
........................................................................................................................................................................................................................GCTACTGGACAGGCAAGGCGCTGAT	25	1	2.00	2	1	0	0	0	0	1
...........................................................................................................................................................................................................GCCTACACCGTGCGCTACTGGACAGGC...........	27	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................CGCTACTGGACAGGCAAGGCGCTGAT	26	1	1.00	1	1	0	0	0	0	0
......GTGCACCCTTGGACGCGGTGT......................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.ATACCGTGCACCCTTGGACGC...........................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0
.........CACCCTTGGACGCGGTGTGCAAAGCTC.............................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................CGTGCGCTACTGGACAGGCAAGGCGC....	26	1	1.00	1	1	0	0	0	0	0
.........................GTGCAAAGCTCTGACGCCCGCGCTG...............................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................CTGGACAGGCAAGGCGCTG..	19	1	1.00	1	0	0	0	0	0	1
..........ACCCTTGGACGCGGTGTG.....................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................GTGCCTACACCGTGCGCTACTGGACAGGC...........	29	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................GCGCTACTGGACAGGCAAGGCGCTG..	25	1	1.00	1	0	0	0	0	0	1
.........................GTGCAAAGCTCTGACGCCCGC...................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................GTGCGCTACTGGACAGGCAAGG.......	22	1	1.00	1	0	0	0	0	0	1
.ATACCGTGCACCCTTGGACGCGGTGT......................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0

droGri2

TCTATCGCGCACCCTTGGACAAGATTTGCAACATTCTGACGCCGGCGCTGGTAGA-------AC-C---------------CA--ATTATTATGTAATCATAT---AAAATG-------------------TT---------TGT---------AAATCTCAACGAATC-C---T-----GA--TTTTTAGGGCTTCCAACGGGCCTACACCGTGCGCTATTGGACAGGAAAGGCGCTGAT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
........................................................................................................................................................................................................................GCTATTGGACAGGAAAGG.......	18	1	1.00	1	1	0

dsi_1554

2l:15329811-15329880 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads