ID:

dsi_15532

 Coordinate:

3l:16496772-16496932 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-23.0 -22.9 -22.9

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CACCACAACCAGTGCCACAAAGTAAAACAAAAGTAAAACAAGTAACACCCGAAAACTACACTGCACAAAATGAAAACAAAACCGAAAACTATACAGAATACACACAATCCATGTGATATATACCCCCATATATTTTGTTTATGCCCATGTGCGATGTGAATCGATATCTATATCCCCCCGATCTCTGTGTGTGCTTGCAGTTAATTTTCAGTGGCGAGTACACAAAAGCCATGGACAAGGACTGGCACTCCGGACACTTCT
**************************************************(((((.((.((((((......................((.(((((((.....((((.((((((((((((((......))))))............)))))).)))))).((((...............)))).)))))))))...)))))))).)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 M023
head
 M053
female body
 GSM343915
embryo
 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
......................................................................................................................................................................................................................................ATGGACAAGGACTGGCACTC........... 20 0 1 3.00 3 3 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AAAAGCCATGGACAAGGACT.................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................ACAAGGACTGGCACTCCGGACACTTC. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................AGGACTGGCACTCCGGACACTTCT 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AAAAGCCATGGACAAGGACTGGCACTCC.......... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................CAAGGACTGGCACTCCGGAC...... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................AAGGACTGGCACTCCGGACA..... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................ATGGACAAGGACTGGCACTCC.......... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................CATGGACAAGGACTGGCACTCCGGA....... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TCTCTGTGTGTGCTTGCAG............................................................. 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................................ACAAGGACTGGCACTCCGGACACT... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................ATGGACAAGGACTGGCACTCCGGAC...... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................AAAAGCCATGGACAAGGACTG................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AAAGCCATGGACAAGGACTGGCACTC........... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................AGGACCGGCACTCCGGACACTTCT 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................ATGGACAAGGACTGGCACTCCGGACA..... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................CTGTCACTTCGGACACTT.. 18 2 3 0.67 2 0 0 0 0 0 2 0 0 0
....................................................................................................................................................................................................................................CCATTGGCAAGGACTGGCA.............. 19 2 5 0.20 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................GCTATGTGAATCGAT................................................................................................ 15 1 5 0.20 1 0 0 0 0 0 0 1 0 0
.................................TAAAACAAGTCACATCCGAAA............................................................................................................................................................................................................... 21 2 6 0.17 1 0 0 0 0 0 0 0 1 0
.............................................................................................................CATGAAATATAGACCCCCAT.................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 0 1 0 0
........................................................................................................................................................................................................CTTATTTTCAGTGGCGA............................................ 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GTGGTGTTGGTCACGGTGTTTCATTTTGTTTTCATTTTGTTCATTGTGGGCTTTTGATGTGACGTGTTTTACTTTTGTTTTGGCTTTTGATATGTCTTATGTGTGTTAGGTACACTATATATGGGGGTATATAAAACAAATACGGGTACACGCTACACTTAGCTATAGATATAGGGGGGCTAGAGACACACACGAACGTCAATTAAAAGTCACCGCTCATGTGTTTTCGGTACCTGTTCCTGACCGTGAGGCCTGTGAAGA
**************************************************(((((.((.((((((......................((.(((((((.....((((.((((((((((((((......))))))............)))))).)))))).((((...............)))).)))))))))...)))))))).)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 O002
Head
 SRR618934
dsim w501 ovaries
 M053
female body
...............................................................................................CTTATGTGTGTTAGGTAC.................................................................................................................................................... 18 0 1 4.00 4 3 0 1 0 0
.........................................................................................ATATATCTTATGTGTGTTGGGT...................................................................................................................................................... 22 2 1 1.00 1 0 1 0 0 0
............................................................................................TGTCTTAGGTGTGTTAGG....................................................................................................................................................... 18 1 2 0.50 1 0 0 0 1 0
.............................................................................................................GTACTCTATATCTGGCGGTA.................................................................................................................................... 20 3 5 0.20 1 0 0 0 1 0
...............................................................................TTAGCTATTGATACGTCTTA.................................................................................................................................................................. 20 3 11 0.09 1 0 0 0 0 1
.......................ATTTTTTTTCATTTTGTTCAT......................................................................................................................................................................................................................... 21 2 13 0.08 1 0 1 0 0 0
.................................................................................................................................................................................................................TGACCGCTCATGCGTT.................................... 16 2 20 0.05 1 0 1 0 0 0
.....................................................................................................................................................................TCGATATAGGGGGGCCCG.............................................................................. 18 3 20 0.05 1 0 0 0 1 0

Generated: 04/24/2015 at 05:02 AM