ID:

dsi_15521

Coordinate:

3r:4282207-4282356 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GTACTTTGGATCCACACCATGCAGCCATCCTCTTCAGAGACTCACGAGGGGTAAGTTTAAAACTTGAAGCTAGCATATAAATTAGAAGACGGAGTATCTCATAAATTGTCTCTAAGTAAACTAAGTAAAGTTGGATTTCTTAATCTTGTTTGGTTTGATAAATATTTTGAAAATTTAATTAGGGAACACATTTGAGGCAAATCTTTTTTGGCTGTGACATACATAATTATCATCCTCGTTATGCATAACA ************************************************((.(((((........))))).))......................(((((.......(((((((.((((.....((((((......((..((((......)))).)).....))))))....)))).))))))).......)))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	M023 head	M024 male body	SRR618934 dsim w501 ovaries	SRR902009 testis	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
.........ATCCACACCATGCAGCCATCCTCTTCAGA....................................................................................................................................................................................................................	29	0	1	1.00	1	1	0	0	0	0	0	0	0
.......................GCCATCCTCTTCAGAGAC.................................................................................................................................................................................................................	18	0	1	1.00	1	0	0	0	1	0	0	0	0
GTACTTTGGATCCACACCATGCAGCCAT..............................................................................................................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TTGGATCTGACATACATAAT.......................	20	2	1	1.00	1	0	0	0	0	1	0	0	0
......................AGCCATCCTCTTCAGAGACT................................................................................................................................................................................................................	20	0	1	1.00	1	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................ATCTTTTTTGGCTGTGACATAC............................	22	0	1	1.00	1	0	0	1	0	0	0	0	0
......................AGTCTTCCTCTTCAGAGA..................................................................................................................................................................................................................	18	2	2	0.50	1	0	0	0	0	0	1	0	0
.................................................................................................................................................................................................CCGGCAAATCTTCTTTGGCT.....................................	20	3	10	0.10	1	0	0	0	0	0	0	1	0
...............................................................................................ATCTCGTAAATTGTCTG..........................................................................................................................................	17	2	20	0.10	2	0	0	0	0	0	0	0	2
............................................................AACTTGATGCTAGGAT..............................................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	0	1	0	0

Anti-sense strand reads

CATGAAACCTAGGTGTGGTACGTCGGTAGGAGAAGTCTCTGAGTGCTCCCCATTCAAATTTTGAACTTCGATCGTATATTTAATCTTCTGCCTCATAGAGTATTTAACAGAGATTCATTTGATTCATTTCAACCTAAAGAATTAGAACAAACCAAACTATTTATAAAACTTTTAAATTAATCCCTTGTGTAAACTCCGTTTAGAAAAAACCGACACTGTATGTATTAATAGTAGGAGCAATACGTATTGT ************************************************((.(((((........))))).))......................(((((.......(((((((.((((.....((((((......((..((((......)))).)).....))))))....)))).))))))).......)))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	SRR553488 RT_0-2 hours eggs	O001 Testis	SRR553487 NRT_0-2 hours eggs
.................GTACGTCGGTAGGAGAAGTCT....................................................................................................................................................................................................................	21	0	1	2.00	2	2	0	0	0
................GGTACGTCGGTAGCAGGAGT......................................................................................................................................................................................................................	20	2	4	0.25	1	1	0	0	0
..............................AGAAGTCTCTGACTG.............................................................................................................................................................................................................	15	1	4	0.25	1	0	1	0	0
....................................................................CGATCGTATATTTAGTCA....................................................................................................................................................................	18	2	14	0.07	1	0	0	1	0
.........................................................ATTGTGGACTTCGATCGC...............................................................................................................................................................................	18	3	20	0.05	1	0	0	0	1

Generated: 04/24/2015 at 12:23 AM