ID:

dsi_15499

 Coordinate:

x:5593422-5593697 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.8 -5.5 -5.2

Flybase annnotation

exon [x_5593698_5594571_+]; CDS [x_5593698_5594183_+]; exon [x_5593209_5593421_+]; CDS [x_5593209_5593421_+]; intron [x_5593422_5593697_+]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACGGAGTCAATCCGGCGAATGGCAATGGGTCGCCGGAACTGCCGCCACCGGTAAGCGAATGATCCGTGTCCGAAATGCAAACTCCATAGGCCAGAAGATCTAAGTCCTAAGATTAAGCCAGTCTTGAAGCTATCAATAAAACTACCTCACACTAAATTCGAAATGCAAATGTACAACGTCTTTATCGAAATCTCTTAGTTTTTCTTTGGTGGTCCGCCTCAACTGGCTATAAATGTTGACTAGATTTTTTGGCAAGACCTGGTAGCATTTCTCCATCCAATACTTAAAAGTTATCGCATCTGAATGATTTCGTAACTGTTTTGCAGCCACCACAGTTCGCCAATCCGCAGCCAAAGCAGATGCCGCCCCAACACAT
****************************************************..((....((((..((.((.................)).))...))))...))..................************************************************************************************************************************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 O002
Head
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR1275483
Male prepupae		 SRR553488
RT_0-2 hours eggs
.........................................................................................................CCTAAGATTAAGCCAGTC............................................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.CGGAGTGACTCCGGCGAATGG.................................................................................................................................................................................................................................................................................................................................................................. 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................AATGGGTCGCCGGAACTGCCGCCACC....................................................................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................CCTAAGATTAAGACAGACTTGAA........................................................................................................................................................................................................................................................ 23 2 1 1.00 1 0 0 0 0 1 0 0 0 0
....................................................AAGCGAATGATCCGTGTCCGAAATG........................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................TAAGCGAATGATCCCGGT................................................................................................................................................................................................................................................................................................................... 18 2 4 0.50 2 2 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................TGACTAGATTTCATGGCA.......................................................................................................................... 18 2 6 0.17 1 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................AGTTTTTCTTCGGTGG.................................................................................................................................................................... 16 1 7 0.14 1 0 0 0 0 0 0 1 0 0
........................GTGGATCGCCGGAACTGCCG............................................................................................................................................................................................................................................................................................................................................ 20 2 10 0.10 1 0 1 0 0 0 0 0 0 0
........................GGTGGTCGCCGGAACTGCCG............................................................................................................................................................................................................................................................................................................................................ 20 3 10 0.10 1 0 0 0 0 0 1 0 0 0
......................................................................................................................................................ACTAAATTCGAAAGG................................................................................................................................................................................................................... 15 1 20 0.10 2 0 0 0 0 0 0 2 0 0
.............................................................................................GAAGATCTAAGTACT............................................................................................................................................................................................................................................................................ 15 1 12 0.08 1 0 1 0 0 0 0 0 0 0
.............................ACCCCGGAACTGCCGTCAC........................................................................................................................................................................................................................................................................................................................................ 19 3 16 0.06 1 0 0 0 0 0 1 0 0 0
.......................................TGCTGCCACCGCTGAGCGAA............................................................................................................................................................................................................................................................................................................................. 20 3 19 0.05 1 0 0 0 0 0 1 0 0 0
............CGGCGGATGGCAATG............................................................................................................................................................................................................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 0 0 0 1 0
..........................................................................................................................................................................GTGCAAGCTCTTTATCGAA........................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TGCCTCAGTTAGGCCGCTTACCGTTACCCAGCGGCCTTGACGGCGGTGGCCATTCGCTTACTAGGCACAGGCTTTACGTTTGAGGTATCCGGTCTTCTAGATTCAGGATTCTAATTCGGTCAGAACTTCGATAGTTATTTTGATGGAGTGTGATTTAAGCTTTACGTTTACATGTTGCAGAAATAGCTTTAGAGAATCAAAAAGAAACCACCAGGCGGAGTTGACCGATATTTACAACTGATCTAAAAAACCGTTCTGGACCATCGTAAAGAGGTAGGTTATGAATTTTCAATAGCGTAGACTTACTAAAGCATTGACAAAACGTCGGTGGTGTCAAGCGGTTAGGCGTCGGTTTCGTCTACGGCGGGGTTGTGTA
*************************************************************************************************************************************************************************************************************************************************************..((....((((..((.((.................)).))...))))...))..................**************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 GSM343915
embryo
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
.........................................................................................................................................................................................................................................................................GTAAAGAGGTAGGTTATGAA........................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.......................................................................................................................TCAGAACGTCGGTAGTTATTT............................................................................................................................................................................................................................................ 21 2 2 0.50 1 0 0 0 1 0 0 0 0 0
............................................................................................................TTTTAATTGGGTCAGAACTT........................................................................................................................................................................................................................................................ 20 2 2 0.50 1 0 0 0 0 1 0 0 0 0
AGCCTCACTGAGGCCGCTTAC................................................................................................................................................................................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 1 0 0 0 0 0 0
....................................................................................................................CGGTCGGAACGTCGGTAGTTATT............................................................................................................................................................................................................................................. 23 3 2 0.50 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................CAAGCGGTTGGGAGTCGG........................ 18 2 3 0.33 1 1 0 0 0 0 0 0 0 0
..CCTCACTGAGGCCGCTTACCA................................................................................................................................................................................................................................................................................................................................................................. 21 3 3 0.33 1 0 0 1 0 0 0 0 0 0
................................................GCCCTTCGCTGACTAGG....................................................................................................................................................................................................................................................................................................................... 17 2 3 0.33 1 0 1 0 0 0 0 0 0 0
..........................................GCGCTGGCCCTTCGCTGACT.......................................................................................................................................................................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 1 0 0 0
..........................................................................................GGTCTTCTAGATTCC............................................................................................................................................................................................................................................................................... 15 1 7 0.14 1 0 0 1 0 0 0 0 0 0
........................................................................................................................................AATTTGATGGAGTGTAGTTT............................................................................................................................................................................................................................ 20 3 8 0.13 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................................TCTACGGCGGGGTCGTTT. 18 2 9 0.11 1 0 0 0 0 0 0 1 0 0
...............................................................................TTGAGGTATCCGGCCCT........................................................................................................................................................................................................................................................................................ 17 2 11 0.09 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................ATACAGTTCTGGACCATCC.............................................................................................................. 19 3 11 0.09 1 1 0 0 0 0 0 0 0 0
..............................GCGGCCTTGACGGCAGT......................................................................................................................................................................................................................................................................................................................................... 17 1 12 0.08 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CAGGCGGAGAAGCCCGATA.................................................................................................................................................. 19 3 13 0.08 1 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................CGGTGGTGACGAGCGGTT................................. 18 2 17 0.06 1 0 1 0 0 0 0 0 0 0
...........................................................................TCGTTTGAGGGATCCG............................................................................................................................................................................................................................................................................................. 16 2 19 0.05 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................AAATAGCTTTGTAGAAT................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1
.................................................................................................................................................................................................................................................................................GAAGGTTATGAATTTGC...................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:5593372-5593747 + dsi_15499 ACGGAG----------------------------TCAATCCGGCG------------AATGGCAATGGGTCGCCG------------GAACTGCCGCCACCGGTAAGCGAATGATCCGTGT---------------------CCGA------AA-TGCAAA-CTCCAT-AGGCCAGAAGA---------------------TCTAAGTCCTAAGATTAAGC---CAGTCTTGAAGCTATCAATAAAACTACCTCACACTAAATTCGAAATGCAAATGTACAA-CGTCTTTAT---CG-------------AA--ATCTCTTAGT--TTT--------------------TCTTTGGTGGTCCGCCTCAACTGGCTATAA---------------ATGTTGACTAG----ATTTTT-TGGCAAGACCTGGTAGCATTTCTCCATCCA-ATACTTAAAAG---TTATCGCATCTGAATGATTTCGTAACTGTTTTGCAGCCACCACAGTTCGCCAATCCGCAGCC---------AAAGCAGATGCCGCCCCAACA-CAT
droSec2 scaffold_4:807529-807903 - ACGGAG----------------------------TCAATCTGGCG------------AATGGCAATGGGTCGCCG------------GAACTGCCGCCACCGGTAAGCGAATGATCCGTGT---------------------CCGA------AA-TG-AAA-CTCCAT-AGGCCAGAAGA---------------------TCTAAGTCCTAAGATTAAGC---CAGTCTTGCAGCTATCAATAAAACTACCTCACACCAAAATCGAAATGCAAATGTACAA-CGTCTTTAT---CG-------------AA--ATCTCTTAGT--TTT--------------------TCTTTGGTGGTCCGCCTCAACTGGCTATAA---------------ATGTTGACTAG----ATTTTT-TGGCAAGGCCTGGTAGCATTTCTCCATTCA-ACACATAAAAG---TTATCGCATCTGAATGATTTCGTAACTGTTTTGCAGCCACCACAGTTCGCCAATCCGCAGCC---------AAAGCAGATGCCGCCCCAACA-CAT
dm3 chrX:5957511-5957888 + ACGGAG----------------------------TGAATCCGGCG------------AATGGCAATGGGTCGCCG------------GAACTGCCGCCACCGGTAAGCGAATGATCCGTGT---------------------CCGA------AT-AC-AAC-CTCGAT-AGGCCAGAAGA---------------------TCTAAGACCTAAGATTAAGC---CAGTCTTGCAGCTAACAATAAAACTACCTCGCACCAAATTCGAAATGCAAATGTACAA-CGTCTTTAT---CG-------------AA--ATCTCTTAGTCTTTT--------------------TCTGTGGTGGTCCGCCTTAACTGGCTATAA---------------ATGTTGACTTG----ATTTTTGTGGCAAGACCTGGCAGCATTTCTCTATCCA-GCACTTAAAAG---TTATCGCATCTGAATGATTTCGTAACTGTTTTGCAGCCACCACAGTTCGCCAATCCCCAGCC---------AAAGCAGATGCCGCCCCAACA-CAT
droEre2 scaffold_4690:3292267-3292628 + ACGGAG----------------------------TCAGTCCGGCG------------AATGGCAGTGGGTCGCCG------------GAACTGCCGCCACCGGTAAGCGAATGATCCGTGT---------------------CCGA------GT-TG-CCACC-CAAA-AGGCCAGAAGA---------------------CCTAAGACCTAAGATTAGTC---CAGCCTTGCAGCTATCAATAAAACTACCTCCCACTAAGCTCGAAACTCAAATTT-------------T---CA-------------AA--ATCTCCTACT--TTT--------------------TCTGTGGTGGTTCGCCTTTGGTGGCTATAA---------------ATGTTGCCTAG----ATTTTT--GGCCAGGCCTGGCGGCATTTCTCCATCCA-AAACTTAAAAG---CCATCGCAGCTAAATGATTTCGTAACCGTTTTGCAGCCACCACAGTTCGCCAATCCCCAGCC---------AAAGCAGGTGCCGCCCCAGCA-GCT
droYak3 X:14816565-14816940 + ACGGAG----------------------------TCCATACGGCG------------AATGGCAATGGGTCGCCG------------GAACTGCCGCCACCGGTAAGCGAATGAACCGTGT---------------------CCGA------GTTAC-CCAAC-CAAT-AGGCCAGCAGAGCTATGACCTATGACCCAAAACCTAAGACCTATGATTAAGC---CAGCCTTGCAGCTATCAATAAAACTACCTCCCACCAAATTCGAAATTCAAATCGTAAA-CGTCTTTAT---CT------CAAAATTAA--AAATCATAGC--TTT--------------------TCTGCGGTGCTCCGCCTTTAGTGGCTATAA---------------ATGCTGAATGG----CTATAA-AT-----------------------------GCACTTAATAG---TTTTTGCATCTAAATGATTTCGCAACTGTTTTGCAGCCACCACAGTTCGCCAATCCGCAGAC---------AAAGCAGATGCCGCCGCAGCA-GCT
droEug1 scf7180000409033:279004-279179 + ACGGAA----------------------------TAAGTTCGACG------------AATGGGAATGGATCGCCG------------GAACTTCCGCCACCGGTAAGCGAATGAACCGTGT---------------------CCGA------GT-GT-CCACCA-A-AAA----------------------------------------------TCGCC---AAACCTGTCATCTATCAATAAAACT----------AAATTCGAATTCCAACT--------GACTTTAT---TG-------------TT--ATCTCTCAGT--TTT--------------------TACATAGGGATTTGCCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302421:714974-715273 + ACGGAT----------------------------TTACTCCGGCG------------AATGGCAACGGATCGCCG------------GAACTTCCGCCACCGGTAAGCGAATGACCCGTGT---------------------CCGA------GT-GC-CCAGCA-A-TAG-CCCAAG--------------------------AATAGGCCAAGAAAGATCCAAC-AGCTGTCAGCTACCAATAAAACTACC---CACTGAATTCGAATCCGAA-------A-CGTCTTTAT---CC-------------AC--ATCCCATAGT--TTT--------------------AGCATGGGGGTCTACCTTTAATGGTCAACAGCTATATTTCGGTTTATGCTGAATCGATAGATGTTT-TAGCA-TACTTAGCA--------------------------------------------------------------------------------------------TATATTGTATATTTATTTATTCG-ACGTTTAAAA
droTak1 scf7180000415769:476992-477262 - ACGGAT----------------------------TTAGTCCGGCG------------AACGGCAATGGATCGCCG------------GAACTTCCGCCACCGGTAAGCGAAAGACCCGTGT---------------------CCGA------GT-GT-CCAACT-A-TAGAGCCAAC--------------------------AATAACCCAAGAATAATCC--CAACCTATCGGCTATCAATAAAACCAAC---CATTTAACTTGA------AACGTCCAA-----------------------------AGTTTCCCATAGT--TTC--------------------TGTTTGGGGG---------------TATCA---------------ATATTAAATGG----ATCTAT-TAA--AAATTTATTGACACTTCAACATATTTTGATTTAAAAGAGCTTATGGTAGCAAAATTAT------------------------------------------------------------------------------
droEle1 scf7180000490141:663137-663319 + ACGGAA----------------------------TAAATCCTGCA------------AATGGCAATGGATCGCCG------------GAACTGCCGCCACCGGTAAGCGAATGACCCGTGT---------------------CCGA------GT-GT-CCAACA-A-T------------------------------------------------TGCCC---AAACCTGTCGGCCATCAATAAAACTC---CACACTAAATGCGATTTCGAA-------AGAATAACTATTATTGTTACATTGA-----ATTTTCCCATAGT--TTT--------------------TTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000778072:144950-145172 + ATGGAA----------------------------TTAATCCGGCG------------AATGGCAATGGATCGCCG------------GAACTTCCTCCACCGGTAAGCGAATGACCCGTGT---------------------CCGA------GT-GT-CCAACA-A-T------------------------------------------------AATCC---CAGCCTGTCAGCTATTAATAAAACTTCC---CACTAAATGCAATTTCGAA-------AAAATCCTTATCATTGTTATTTTGG-----ATTATCCCATAGT--TTT--------------------TATACGGGGGTCTACCTTTTCTAGGTTTCA---------------ATTTTAATTCG----ACTT------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000454072:1407551-1407651 - ACGGAT----------------------------CGCATCCGACG------------AACGGCAACGGATCCTC------AGCAACGGAGCTTCCGCCGCCGGTAAGCAAATGACCCACT------------------------GG------TA-AC-CCAAGA-A-C------------------------------------------------GACCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGGC-------------------------C-------AG
droKik1 scf7180000302610:1507431-1507548 - ACAGCG----------------------------GCAG------------------------CCAGGGAACGCCGGAACTAGCGCCGCAATTACCGCCTCCGGTAAGCGAATGACCCG-AT----------CCAAACCGTGTCCAAA-----GT-GT-CCAACA-A-------------A---------------------TCCAAAAACCAATAA-AATT---C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA
droAna3 scaffold_13417:538950-539001 + TGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCAGCCACCACAGTTCGCCAATCCGCAGCC---------AAAGCAACTGCCGGCC---------
droBip1 scf7180000396362:593443-593494 - TAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCCAGCCACCACAGTTCGCCAATCCACAGCC---------CAAGCAACTGCCGGCC---------
dp5 2:26509975-26510051 - ACGGAGTTCCACCGCAGCAACATGTCCCGCCACAACAGCAGCAACAGCAACAGCC----------------ACC-------------GCATCATCACCATCCGCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_21:329481-329534 - ACGAAT------------------------------GGTGGAGCG------------GCCAGCAATGGAACGCCG------------GAACTTCCACCACCGGTAAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004963:1846782-1847066 - ATGGTA----------------------------TCAATGGAAGC------------AATATCAATGGAACGCCA------------GAGCTGCCACCACCGGTAAGCAAACAATGATTGGATGAACTAATCAAAATTGCTTACGGATCGGAAA-TT-AAT-C-----------CACAAAACTAT-----------------GTAAAATCTATAA--------------------------------------------------------------------------------------ATTTA-----ATG---CAACAGC--ACTCATCCAACTCCCACACGCCCCCCAAAAGTATGCACAATTTATTAATAGTATTTATTTTCGCATAT---------------------------------------------------------------------------------------------TTACTTGCAGCCGCCACAATTTGCCAATCCCCAGCAGTCATTATATAAGCAATTACCCACACAACAGCAG
droVir3 scaffold_12928:619521-619575 - ACAAGA----------------------------GCAACAACGTG------------AATGGCA------CGCCG------------GAATTACCGCCGCCGGTAAGTAATTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6680:21986573-21986640 + GCGGTG----------------------------TCGATGTG-----------------------------GCCG------------GCGCTGTTGCTGGTGGTGAGCTTAAGGGCCGCGT---------------------CAGC------GA-GG-AGAACC-C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------
droGri2 scaffold_14853:7860958-7861026 + ACGGCA----------------------------ACAACAACAACAACAGCAGCCACAATATGAATGGAACGCTG------------GAATTACCGCCACCGGTAAGTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ACGGAG----------------------------TCAATCCGGCG------------AATGGCAATGGGTCGCCG------------GAACTGCCGCCACCGGTAAGCGAATGATCCGTGT---------------------CCGA------AA-TGCAAA-CTCCAT-AGGCCAGAAGA---------------------TCTAAGTCCTAAGATTAAGC---CAGTCTTGAAGCTATCAATAAAACTACCTCACACTAAATTCGAAATGCAAATGTACAA-CGTCTTTAT---CG-------------AA--ATCTCTTAGT--TTT--------------------TCTTTGGTGGTCCGCCTCAACTGGCTATAA---------------ATGTTGACTAG----ATTTTT-TGGCAAGACCTGGTAGCATTTCTCCATCCA-ATACTTAAAAG---TTATCGCATCTGAATGATTTCGTAACTGTTTTGCAGCCACCACAGTTCGCCAATCCGCAGCC---------AAAGCAGATGCCGCCCCAACA-CATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................CCTAAGATTAAGC---CAGTC........................................................................................................................................................................................................................................................................................................................................1811.00100000100000000000
...............................................................AATGGGTCGCCG------------GAACTGCCGCCACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
........................................................................................................AAGCGAATGATCCGTGT---------------------CCGA------AA-TG................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
droSec2
ACGGAG----------------------------TCAATCTGGCG------------AATGGCAATGGGTCGCCG------------GAACTGCCGCCACCGGTAAGCGAATGATCCGTGT---------------------CCGA------AA-TG-AAA-CTCCAT-AGGCCAGAAGA---------------------TCTAAGTCCTAAGATTAAGC---CAGTCTTGCAGCTATCAATAAAACTACCTCACACCAAAATCGAAATGCAAATGTACAA-CGTCTTTAT---CG-------------AA--ATCTCTTAGT--TTT--------------------TCTTTGGTGGTCCGCCTCAACTGGCTATAA---------------ATGTTGACTAG----ATTTTT-TGGCAAGGCCTGGTAGCATTTCTCCATTCA-ACACATAAAAG---TTATCGCATCTGAATGATTTCGTAACTGTTTTGCAGCCACCACAGTTCGCCAATCCGCAGCC---------AAAGCAGATGCCGCCCCAACA-CATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....G----------------------------TCAATCTGGCG------------AATGGCAATGGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020020
.....G----------------------------TCAATCTGGCG------------AATGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.................................................................................................................................................................................AGA---------------------TCTAAGTCCTAAGATTAAGC---AGT..........................................................................................................................................................................................................................................................................................................................................2611.0011000
......................................................................................................................................................................................................................ATTAAGC---CAGTCTTGCAGCT................................................................................................................................................................................................................................................................................................................................2011.0010010
...................................CAATCTGGCG------------AATGGCAATGGGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
..................................................................GGGTCGCCG------------GAACTGCCGCCAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
....................................AATCTGGCG------------AATGGCAATGGGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
dm3
ACGGAG----------------------------TGAATCCGGCG------------AATGGCAATGGGTCGCCG------------GAACTGCCGCCACCGGTAAGCGAATGATCCGTGT---------------------CCGA------AT-AC-AAC-CTCGAT-AGGCCAGAAGA---------------------TCTAAGACCTAAGATTAAGC---CAGTCTTGCAGCTAACAATAAAACTACCTCGCACCAAATTCGAAATGCAAATGTACAA-CGTCTTTAT---CG-------------AA--ATCTCTTAGTCTTTT--------------------TCTGTGGTGGTCCGCCTTAACTGGCTATAA---------------ATGTTGACTTG----ATTTTTGTGGCAAGACCTGGCAGCATTTCTCTATCCA-GCACTTAAAAG---TTATCGCATCTGAATGATTTCGTAACTGTTTTGCAGCCACCACAGTTCGCCAATCCCCAGCC---------AAAGCAGATGCCGCCCCAACA-CATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................AATGGGTCGCCG------------GAACTGCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCACAGTTCGCCAATCCCC......................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................GGCAATGGGTCGCCG------------GAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................AAGATTAAGC---CAGTCTTGCAGCTAA..............................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................TGGCAATGGGTCGCCG------------GAACTGCCGCCACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................GGCAATGGGTCGCCG------------GAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCATCTGAATGATTTCGTAACTGT...................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...................................................................................................CCGGTAAGCGAATGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001
...............................................................AATGGGTCGCCG------------GAACTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
......................................TCCGGCG------------AATGGCAATGGGTCGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.....G----------------------------TGAATCCGGCG------------AATGGCAATGGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...................................................................GGTCGCCG------------GAACTGCCGCCAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................GAT-AGGCCAGAAGA---------------------TCTAAGAC............................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................AAATGCAAATGTACAA-CGTCTT............................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................GA---------------------TCTAAGACCTAAGATTAAGC---CA...........................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCC---------AAAGCAGATGCCGCC..........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................AT-AC-AAC-CTCGAT-AGGCCAGAA...........................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................AAGATTAAGC---CAGTCTTGCAGCTAACA............................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TATAA---------------ATGTTGACTTG----AT..................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................TCCGGCG------------AATGGCAATGGGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---TTATCGCATCTGAATGATTT............................................................................2211.0010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................AATGGGTCGCCG------------GAACTGCCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.......................................................................................GAACTGCCGCCACCGGTAAGCGAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................CGAT-AGGCCAGAAGA---------------------TCTAAGACCT..........................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................ATGGCAATGGGTCGCCG------------GAACTGCCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................ATGGCAATGGGTCGCCT------------A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1880.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ACGGAG----------------------------TCAGTCCGGCG------------AATGGCAGTGGGTCGCCG------------GAACTGCCGCCACCGGTAAGCGAATGATCCGTGT---------------------CCGA------GT-TG-CCACC-CAAA-AGGCCAGAAGA---------------------CCTAAGACCTAAGATTAGTC---CAGCCTTGCAGCTATCAATAAAACTACCTCCCACTAAGCTCGAAACTCAAATTT-------------T---CA-------------AA--ATCTCCTACT--TTT--------------------TCTGTGGTGGTTCGCCTTTGGTGGCTATAA---------------ATGTTGCCTAG----ATTTTT--GGCCAGGCCTGGCGGCATTTCTCCATCCA-AAACTTAAAAG---CCATCGCAGCTAAATGATTTCGTAACCGTTTTGCAGCCACCACAGTTCGCCAATCCCCAGCC---------AAAGCAGGTGCCGCCCCAGCA-GCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....G----------------------------TCAGTCCGGCG------------AATGGCAGTGGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGTTCGCCAATCCCCAGCC---------AAA......................2511.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCCCAGCC---------AAAGCAGGT................2011.0011000000
....AG----------------------------TCAGTCCGGCG------------AATGGCAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
.........................................GGCG------------AATGGCAGTGGGTCGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
...................................................................................................................................................................................A---------------------CCTAAGACCTAAGATTAGTC---C............................................................................................................................................................................................................................................................................................................................................2211.0010100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCCCCAGCC---------AAAGCAGGT................2111.0010000100
..........................................GCG------------AATGGCAGTGGGTCGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
......................................................................................................GTAAGCGAATGATCCGTGT---------------------CCGA------GT-..................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAATGATTTCGTAACCGTTT.................................................................2311.0010000100
droYak3
ACGGAG----------------------------TCCATACGGCG------------AATGGCAATGGGTCGCCG------------GAACTGCCGCCACCGGTAAGCGAATGAACCGTGT---------------------CCGA------GTTAC-CCAAC-CAAT-AGGCCAGCAGAGCTATGACCTATGACCCAAAACCTAAGACCTATGATTAAGC---CAGCCTTGCAGCTATCAATAAAACTACCTCCCACCAAATTCGAAATTCAAATCGTAAA-CGTCTTTAT---CT------CAAAATTAA--AAATCATAGC--TTT--------------------TCTGCGGTGCTCCGCCTTTAGTGGCTATAA---------------ATGCTGAATGG----CTATAA-AT-----------------------------GCACTTAATAG---TTTTTGCATCTAAATGATTTCGCAACTGTTTTGCAGCCACCACAGTTCGCCAATCCGCAGAC---------AAAGCAGATGCCGCCGCAGCA-GCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................ATACGGCG------------AATGGCAATGGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200000020000
....................................CATACGGCG------------AATGGCAATGGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200000020000
.....................................................................TCGCCG------------GAACTGCCGCCACCGGTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
............................................G------------AATGGCAATGGGTCGCCG------------GAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAATCCGCAGAC---------AAAGCAGATGCC.............2611.00101000000000
..........................................................................................................................................................................GGCCAGCAGAGCTATGACCTATGACCC........................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000
....................................CATACGGCG------------AATGGCAATGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
..................................................................GGGTCGCCG------------GAACTGCCGCCAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
............................................G------------AATGGCAATGGGTCGCCG------------GAACTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
.........................................................AATGGCAATGGGTCGCCG------------GAACTGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
.................................................................................................................................................................................AGAGCTATGACCTATGACCCA.......................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
.........................................GGCG------------AATGGCAATGGGTCGCCG------------GA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAC---------AAAGCAGATGCCGCCGCA.......2211.00101000000000
..........................................................................................................................................................................GGCCAGCAGAGCTATGACCTAT.............................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
................................................................................................................................................................................................GACCCAAAACCTAAGACCTATG.......................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................TATAA-AT-----------------------------GCACTTAATAG---TTTTTGC.........................................................................................2511.00100100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGAC---------AAAGCAGATGCCGCCGCAG......2611.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAC---------AAAGCAGATGCCGCCGC........2311.00100100000000
droEug1
ACGGAA----------------------------TAAGTTCGACG------------AATGGGAATGGATCGCCG------------GAACTTCCGCCACCGGTAAGCGAATGAACCGTGT---------------------CCGA------GT-GT-CCACCA-A-AAA----------------------------------------------TCGCC---AAACCTGTCATCTATCAATAAAACT----------AAATTCGAATTCCAACT--------GACTTTAT---TG-------------TT--ATCTCTCAGT--TTT--------------------TACATAGGGATTTGCCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
ACGGAT----------------------------TTACTCCGGCG------------AATGGCAACGGATCGCCG------------GAACTTCCGCCACCGGTAAGCGAATGACCCGTGT---------------------CCGA------GT-GC-CCAGCA-A-TAG-CCCAAG--------------------------AATAGGCCAAGAAAGATCCAAC-AGCTGTCAGCTACCAATAAAACTACC---CACTGAATTCGAATCCGAA-------A-CGTCTTTAT---CC-------------AC--ATCCCATAGT--TTT--------------------AGCATGGGGGTCTACCTTTAATGGTCAACAGCTATATTTCGGTTTATGCTGAATCGATAGATGTTT-TAGCA-TACTTAGCA--------------------------------------------------------------------------------------------TATATTGTATATTTATTTATTCG-ACGTTTAAAASizeHit CountTotal NormTotal
No Reads
droTak1
ACGGAT----------------------------TTAGTCCGGCG------------AACGGCAATGGATCGCCG------------GAACTTCCGCCACCGGTAAGCGAAAGACCCGTGT---------------------CCGA------GT-GT-CCAACT-A-TAGAGCCAAC--------------------------AATAACCCAAGAATAATCC--CAACCTATCGGCTATCAATAAAACCAAC---CATTTAACTTGA------AACGTCCAA-----------------------------AGTTTCCCATAGT--TTC--------------------TGTTTGGGGG---------------TATCA---------------ATATTAAATGG----ATCTAT-TAA--AAATTTATTGACACTTCAACATATTTTGATTTAAAAGAGCTTATGGTAGCAAAATTAT------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
ACGGAA----------------------------TAAATCCTGCA------------AATGGCAATGGATCGCCG------------GAACTGCCGCCACCGGTAAGCGAATGACCCGTGT---------------------CCGA------GT-GT-CCAACA-A-T------------------------------------------------TGCCC---AAACCTGTCGGCCATCAATAAAACTC---CACACTAAATGCGATTTCGAA-------AGAATAACTATTATTGTTACATTGA-----ATTTTCCCATAGT--TTT--------------------TTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
ATGGAA----------------------------TTAATCCGGCG------------AATGGCAATGGATCGCCG------------GAACTTCCTCCACCGGTAAGCGAATGACCCGTGT---------------------CCGA------GT-GT-CCAACA-A-T------------------------------------------------AATCC---CAGCCTGTCAGCTATTAATAAAACTTCC---CACTAAATGCAATTTCGAA-------AAAATCCTTATCATTGTTATTTTGG-----ATTATCCCATAGT--TTT--------------------TATACGGGGGTCTACCTTTTCTAGGTTTCA---------------ATTTTAATTCG----ACTT------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
ACGGAT----------------------------CGCATCCGACG------------AACGGCAACGGATCCTC------AGCAACGGAGCTTCCGCCGCCGGTAAGCAAATGACCCACT------------------------GG------TA-AC-CCAAGA-A-C------------------------------------------------GACCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGGC-------------------------C-------AGSizeHit CountTotal NormTotal
No Reads
droKik1
ACAGCG----------------------------GCAG------------------------CCAGGGAACGCCGGAACTAGCGCCGCAATTACCGCCTCCGGTAAGCGAATGACCCG-AT----------CCAAACCGTGTCCAAA-----GT-GT-CCAACA-A-------------A---------------------TCCAAAAACCAATAA-AATT---C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AASizeHit CountTotal NormTotal
No Reads
droAna3
TGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCAGCCACCACAGTTCGCCAATCCGCAGCC---------AAAGCAACTGCCGGCC---------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGCC---------AAAGCAACTGCCGGC..........2311.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC---------AAAGCAACTGCCGGCC---------1811.001001000
droBip1
TAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCCAGCCACCACAGTTCGCCAATCCACAGCC---------CAAGCAACTGCCGGCC---------SizeHit CountTotal NormTotal
No Reads
dp5
ACGGAGTTCCACCGCAGCAACATGTCCCGCCACAACAGCAGCAACAGCAACAGCC----------------ACC-------------GCATCATCACCATCCGCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................AACAGCAGCAACAGCAACAGCC----------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2230.3310100000000
droPer2
ACGAAT------------------------------GGTGGAGCG------------GCCAGCAATGGAACGCCG------------GAACTTCCACCACCGGTAAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
ATGGTA----------------------------TCAATGGAAGC------------AATATCAATGGAACGCCA------------GAGCTGCCACCACCGGTAAGCAAACAATGATTGGATGAACTAATCAAAATTGCTTACGGATCGGAAA-TT-AAT-C-----------CACAAAACTAT-----------------GTAAAATCTATAA--------------------------------------------------------------------------------------ATTTA-----ATG---CAACAGC--ACTCATCCAACTCCCACACGCCCCCCAAAAGTATGCACAATTTATTAATAGTATTTATTTTCGCATAT---------------------------------------------------------------------------------------------TTACTTGCAGCCGCCACAATTTGCCAATCCCCAGCAGTCATTATATAAGCAATTACCCACACAACAGCAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................GAAGC------------AATATCAATGGAACGCCA------------GAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGCCAATCCCCAGCAGT................................2011.00100010
.....................................ATGGAAGC------------AATATCAATGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
............................................................ATCAATGGAACGCCA------------GAGCTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
..............................................................................................................................................ACGGATCGGAAA-TT-AAT-C-----------...............................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
............................................................ATCAATGGAACGCCA------------GAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
droVir3
ACAAGA----------------------------GCAACAACGTG------------AATGGCA------CGCCG------------GAATTACCGCCGCCGGTAAGTAATTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................ACAACGTG------------AATGGCA------CGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
............................................G------------AATGGCA------CGCCG------------GAATTACCGCCGCCGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000000000000001000000000000000000000000000000000000000000000000
............................................G------------AATGGCA------CGCCG------------GAATTACCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000010000000000000000000000000000000000000000000000
............................................G------------AATGGCA------CGCCG------------GAATTACCGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000001000
............................................................GGCA------CGCCG------------GAATTACCGCCGCCGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000100000000000000000000000000000000000000000000000
droMoj3
GCGGTG----------------------------TCGATGTG-----------------------------GCCG------------GCGCTGTTGCTGGTGGTGAGCTTAAGGGCCGCGT---------------------CAGC------GA-GG-AGAACC-C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................................TAAGGGCCGCGT---------------------CAGC------GA-GG-A..............................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.........................................G-----------------------------GCCG------------GCGCTGTTGCTGGTGGTGAGCTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
droGri2
ACGGCA----------------------------ACAACAACAACAACAGCAGCCACAATATGAATGGAACGCTG------------GAATTACCGCCACCGGTAAGTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
............................................CAACAGCAGCCACAATATGAATGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110

Generated: 05/19/2015 at 04:12 AM