ID:

dsi_1549

 Coordinate:

3l:16012588-16012756 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-39.1 -39.1 -39.1

Flybase annnotation

CDS [3l_16012534_16012587_-]; exon [3l_16010722_16012587_-]; CDS [3l_16012757_16012859_-]; exon [3l_16012757_16012859_-]; intron [3l_16012588_16012756_-]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGGAGGGCACTGAGGGCGACAAGATCGAGAAGGAATTGGAGAAGGACAAGGTGAGGCTGGAGTCCTGTAAACCAGATGGTCTATTCTTGGGTTTTCTTTGTGTTTGAAAGTGCTTATGTAAATTGTTAAATCCACTCGCTAAGGACAAGAATAGACCCTCTAGTTTAAAATTTAAACTACCTTTAGCCACATACTAAGCCATGTCCTTCTATTTTGCAGTCAAACGAGAAGGAGTCGACCGAGGAGAACAAAGAGAAGGAGGAAACAAA
**************************************************(((.((((((((.....(((((.(((.((((((((((((..(((.....((((((((...(((....))).....)))))..))).....)))..)))))))))))).))).))))).............)))))))).)))...........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M025
embryo
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M024
male body		 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
..................................................................................................................................................................................................................................................GGAGAACAAAGAGAAGGAGGAAACA.. 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0
......................GATCGAGAAGGAGTTGGAGAAGG................................................................................................................................................................................................................................ 23 1 1 2.00 2 2 0 0 0 0 0 0 0 0
.......................ATCGAGAAGGAATTGGAGAAGGACAAG........................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.......................ATCGAGAAGGAATTGGAGAAG................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0
...AGGGCACTGAGGGCGACA........................................................................................................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................GAGGAGAACAAAGAGAAGG.......... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..GAGGGCACTGAGGGCGACAAGATCGAGAA.............................................................................................................................................................................................................................................. 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................CAAGATCGAGAAGGAATTGGAGAA.................................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0
....................................................................................TCTTGGGTTTTCTCGGTGTATG................................................................................................................................................................... 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0
...................CAAGATCGAGAAGGAATT........................................................................................................................................................................................................................................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................GACAAGATCGAGAAGGAGTTGG...................................................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..GAGGGCACTGAGGGCGACAAGATC................................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................AGAACAAAGAGAAGG.......... 15 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..................................................GTGAGGCTGGAGTCCTGTA........................................................................................................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................CTAAGGACAAGAATAGACCCTCC............................................................................................................ 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0
AGGAGGGCACTGAGGGCGACA........................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................GAAGGAGTCGACCGAGGAGAACA................... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................................AGGAGTCGACCGAGGAGAACAAAG................ 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................AGGAGTCGACCGAGGAGAACAAAGA............... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................AGTCAAACGAGAAGG..................................... 15 0 1 1.00 1 0 0 0 1 0 0 0 0 0
....................................................................................TCTTTGGTTTTCTTGCTGTTTG................................................................................................................................................................... 22 3 18 0.67 12 0 0 12 0 0 0 0 0 0
.................................................................................................................................................................................................CTAAGCCATGTACGTCTA.......................................................... 18 2 2 0.50 1 0 0 0 1 0 0 0 0 0
...........................................................................................TTTTCTTTGTGTCTGAAA................................................................................................................................................................ 18 1 2 0.50 1 0 0 0 1 0 0 0 0 0
....................................................................................TCTTTGGTTTTCTTTCTGTTTG................................................................................................................................................................... 22 2 2 0.50 1 0 0 1 0 0 0 0 0 0
.................GACAAGATCGAGAAGGC........................................................................................................................................................................................................................................... 17 1 3 0.33 1 0 0 0 1 0 0 0 0 0
....................................................................................TCTTTGGTTTTCTTGTTGTTTGA.................................................................................................................................................................. 23 3 6 0.33 2 0 0 2 0 0 0 0 0 0
...................................................................................................................................................................................................................TGTTGCAGTTGAACGAGAAGGA.................................... 22 3 3 0.33 1 0 0 0 0 0 0 0 1 0
....................................................................................TCTTTGGTTATCTATGTGTTTG................................................................................................................................................................... 22 3 6 0.17 1 0 0 1 0 0 0 0 0 0
..................................ATTGGAGAAGGACAAGTC......................................................................................................................................................................................................................... 18 2 7 0.14 1 0 1 0 0 0 0 0 0 0
................................GAATTGCAGAGTGACAAGGT......................................................................................................................................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 0 0 0 1
..........................................AGGACAAGGGGAGGC.................................................................................................................................................................................................................... 15 1 8 0.13 1 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................................................................................................AAGAAAGAGAAGGAGGAA..... 18 1 8 0.13 1 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................................................................TGTAGTCAAACGTCAAGGA.................................... 19 3 18 0.11 2 0 0 0 0 0 0 0 2 0
...............................................................................................CTTTGTGTTTGAATGT.............................................................................................................................................................. 16 1 16 0.06 1 0 0 0 0 0 0 0 0 1
............................................................................................................................................ATGGACAAGTATAGAGCCT.............................................................................................................. 19 3 16 0.06 1 0 0 0 0 0 1 0 0 0
............CTGGCGACAAGATCGA................................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1
....................................................................AAACCAGATGATCTATCCA...................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

TCCTCCCGTGACTCCCGCTGTTCTAGCTCTTCCTTAACCTCTTCCTGTTCCACTCCGACCTCAGGACATTTGGTCTACCAGATAAGAACCCAAAAGAAACACAAACTTTCACGAATACATTTAACAATTTAGGTGAGCGATTCCTGTTCTTATCTGGGAGATCAAATTTTAAATTTGATGGAAATCGGTGTATGATTCGGTACAGGAAGATAAAACGTCAGTTTGCTCTTCCTCAGCTGGCTCCTCTTGTTTCTCTTCCTCCTTTGTTT
**************************************************(((.((((((((.....(((((.(((.((((((((((((..(((.....((((((((...(((....))).....)))))..))).....)))..)))))))))))).))).))))).............)))))))).)))...........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M025
embryo
.......................................................................................................................................................................................................................................CGCAGCTGGCTCCTC....................... 15 1 3 0.67 2 2 0 0
....................................................................TTAGGTCTACCAGATGA........................................................................................................................................................................................ 17 2 10 0.10 1 0 1 0
...................................................................................................................................................................................................................AAAATGTCACTTTGCTCT........................................ 18 2 16 0.06 1 0 0 1
...........................................................................................................................................................................................................................................GCTGGCTCCTCTTTT................... 15 1 16 0.06 1 0 1 0
.............................................................................................................................AATTGGGGTCAGCGATTC.............................................................................................................................. 18 3 20 0.05 1 1 0 0

Generated: 04/24/2015 at 01:14 AM