ID:dsi_15488 |
Coordinate:3r:10124703-10124763 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
five_prime_UTR [3r_10124576_10124655_+]; CDS [3r_10124656_10124702_+]; exon [3r_10124576_10124702_+]; exon [3r_10124764_10125055_+]; CDS [3r_10124764_10124962_+]; intron [3r_10124703_10124763_+]
No Repeatable elements found
| ##################################################-------------------------------------------------------------################################################## ATCATGATGGTGGCTGGCTCCTTCGGACTTCAGCAGTTCTCCAACCTCAGGTTAGCATTTAAGAATCTCCGGGAAATCCCTAGCTAACCCATGAGTCTCTTCCCTTTACAGGTATCAGTACGCCAAGAAGCAGCCGGTAACGCCGGAGGAGATGAAAAAGT **************************************************..........((((..(((.(((..............)))..)))..))))..........************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | M025 embryo |
SRR902008 ovaries |
SRR553488 RT_0-2 hours eggs |
SRR553485 Chicharo_3 day-old ovaries |
SRR618934 dsim w501 ovaries |
SRR553486 Makindu_3 day-old ovaries |
M053 female body |
GSM343915 embryo |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..............TGGCTCCTTCGGACTTCAGCAGTTC.......................................................................................................................... | 25 | 0 | 1 | 3.00 | 3 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......TGGTGGCTGGCTCCTTCGGACTG................................................................................................................................... | 23 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................................................TACGCCAAGAAGCAGCCGG........................ | 19 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ................................................................................................................TATCAGTACGCCAAGAAGCAGCCGGT....................... | 26 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| .............CTGGCTCCTTCGGACTGCAGC............................................................................................................................... | 21 | 1 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................................................................TCAGGTATCAGTACGCCAAGAAG............................... | 23 | 1 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| .............................................................................................................AGGTATCAGTACGCCAAGAAGCAGCAA......................... | 27 | 2 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................................................................TCAGGTATCAGTACGCCAAGAAGCAGC........................... | 27 | 1 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| ...................................................................................................................................AGCCGGTAACGCCGGAGGAGATGAA..... | 25 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| .............................TCAGCAGTTCTCCAACCTCAGGTATC.......................................................................................................... | 26 | 3 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ...................CCTTCGGACTTCAGCAGTTCTCCAAC.................................................................................................................... | 26 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................TCGGACTGCAGCAGTTCTCCAACCTC................................................................................................................. | 26 | 1 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ...........GGCTGGCTCCTTCGGACTTCAG................................................................................................................................ | 22 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..............TGGCTCCTTCGGACTGCAGCAGTTCAA........................................................................................................................ | 27 | 3 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............................TTCAGCAGCTCTCCAAC.................................................................................................................... | 17 | 1 | 9 | 0.44 | 4 | 0 | 0 | 0 | 0 | 4 | 0 | 0 | 0 |
| ..........TGGCTGGCTACTTCGGAA..................................................................................................................................... | 18 | 2 | 8 | 0.25 | 2 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 |
| .............CTGGCTCCTTCGGGATTCGG................................................................................................................................ | 20 | 3 | 4 | 0.25 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ................GCTCTTTCGGACTTC.................................................................................................................................. | 15 | 1 | 5 | 0.20 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ................GCGCCTTCGGACTTC.................................................................................................................................. | 15 | 1 | 6 | 0.17 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ...........................CTTCAGCAGCTCTCCAAC.................................................................................................................... | 18 | 1 | 9 | 0.11 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ............................TTCAGCAGCTCTCCAA..................................................................................................................... | 16 | 1 | 11 | 0.09 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ................................................................................................................................................GGAGGAGATGTAAAA.. | 15 | 1 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
|
TAGTACTACCACCGACCGAGGAAGCCTGAAGTCGTCAAGAGGTTGGAGTCCAATCGTAAATTCTTAGAGGCCCTTTAGGGATCGATTGGGTACTCAGAGAAGGGAAATGTCCATAGTCATGCGGTTCTTCGTCGGCCATTGCGGCCTCCTCTACTTTTTCA
**************************************************..........((((..(((.(((..............)))..)))..))))..........************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR618934 dsim w501 ovaries |
O001 Testis |
GSM343915 embryo |
O002 Head |
SRR553488 RT_0-2 hours eggs |
SRR553485 Chicharo_3 day-old ovaries |
M024 male body |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...........CCGACCGATGAAGCCTG..................................................................................................................................... | 17 | 1 | 3 | 1.33 | 4 | 4 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............CGACCGATGAAGCCTG..................................................................................................................................... | 16 | 1 | 5 | 1.20 | 6 | 6 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................CCATTGCGGCCTCCTCTA........ | 18 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| .........................CGGGAGTAGTCAAGAGGTTGGA.................................................................................................................. | 22 | 3 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ..........ACCGACCGATGAAGCCTG..................................................................................................................................... | 18 | 1 | 3 | 1.00 | 3 | 1 | 2 | 0 | 0 | 0 | 0 | 0 |
| ..............ACCGAGGAAGCCAGAAG.................................................................................................................................. | 17 | 1 | 2 | 1.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................CTTTAGGGATCGATTGGGTACTCAGAGA............................................................. | 28 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........CCACCGACCGAGGAAGCCTGAA................................................................................................................................... | 22 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| .........................CTGAAGTCACCAAGAGGTAGGA.................................................................................................................. | 22 | 3 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ........................CCTGAAGTCGTCAAGAGGTTG.................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................................................GGGACATGGCCAAAGTCATGC....................................... | 21 | 3 | 2 | 0.50 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ..........................GGAAATCGTCAAGAGGTTGGT.................................................................................................................. | 21 | 3 | 2 | 0.50 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ...........................GAAGTCGTCGAGAGGTT..................................................................................................................... | 17 | 1 | 9 | 0.11 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................TAAAGTCGTCAAGAG........................................................................................................................ | 15 | 1 | 9 | 0.11 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ............................AAGTCGTCAATAGGT...................................................................................................................... | 15 | 1 | 16 | 0.06 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ..............................................................................................................CAATAGTCATGCTGTACTT................................ | 19 | 3 | 16 | 0.06 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
Generated: 04/24/2015 at 10:29 AM