ID:

dsi_15455

 Coordinate:

x:15443963-15444201 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-37.8 -37.5 -37.5

Flybase annnotation

exon [x_15444202_15444470_-]; CDS [x_15444202_15444470_-]; exon [x_15443767_15443962_-]; CDS [x_15443767_15443962_-]; intron [x_15443963_15444201_-]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCGGTGAGTGCACCTGCCAGGTGCCCTTCGTCCTGCCCTCGGACTTCAATGTGAGTTATAGGAATCCAGAGCTTCAGTAGCTGTCCAGCTCATGTAATCAGCACTGAGTTTAGGTAGTGAAGTAGTTAAAATCAAAAGCTATATGCTGCTCTTATAATCTGCAAGGTATTTTATCATAGCAGATTGGCTTGGAAAAAATATTGATGATCTTGTTGATAGTGGATTTGGATTCTTTATAATACTTTAAAAAGAGATTCTCATTTAAGTATTTCGTTAACTTCCTTTAAAGGGTGTGGTATACATGTACTACGGACTGACCAACTACTATCAGAACCATCG
******************************************************..........((((.(((((((((.((((....((....))...))))))))))....(((((((..((((((.........)))))).)))))))....((((((((..((((...))))...))))))))))))))).....(((((((......)))))))..*********************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M023
head
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
.........................................................................................................................................................................................................................................................................................................ATACATGTACTACGGACT........................ 18 0 1 120.00 120 57 63 0 0 0 0 0 0 0 0
....................GTGCCCTTCGTCCTGG............................................................................................................................................................................................................................................................................................................... 16 1 11 29.09 320 0 0 263 55 0 0 2 0 0 0
....................GTGCCCTTCGTCCTG................................................................................................................................................................................................................................................................................................................ 15 0 2 13.00 26 0 0 16 9 0 0 0 0 1 0
.........................................................................................................................................................................................................................................................................................................ATACATGTACTACGGACTGACC.................... 22 0 1 11.00 11 7 3 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................................................................................................................ATACATGTACTACGGACC........................ 18 1 1 10.00 10 6 4 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................ATACATGTACTACGGACG........................ 18 1 1 5.00 5 2 3 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................GGTGTGGTATACATGTACTACGGACT........................ 26 0 1 4.00 4 1 3 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................ATACATGTACTACGGACTGACCAACTACT............. 29 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0
...................AGTGCCCTTCGTCCTGG............................................................................................................................................................................................................................................................................................................... 17 2 20 2.40 48 0 0 35 12 0 0 0 0 1 0
.........................................................................................................................................................................................................................................................................................................ATACATGTACTACGGACTGACCAACT................ 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................GTACTACGGACTGACCAAC................. 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
........................CCTTCGTCCTGCCCTCGGAC....................................................................................................................................................................................................................................................................................................... 20 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................TACATGTACTACGGACTGACCAACTAC.............. 27 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0
......................................................................................................................................................................................................................................................................................................GGTATACATGTACTACGGACT........................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................AACTACTATCAGAACCATC. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................GACCAACTACTATCAGAA...... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................................................................................................................ATACATGTACTACGAACT........................ 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................TACTACGGACTGACCAACT................ 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................CTACGGACTGACCAACTACT............. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................TCGTCCTGCCCTCGGACT...................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................ATTGATGATCTTGTTGATAGT....................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................TATACATGTACTACGGACT........................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................CCTCGGACTTCAATGTGAGTT.......................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................CATGTACTACGGACTGACCAACTACTATC.......... 29 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................................................................................................ACTACGGACTGACCAACTACT............. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................ATGTACTACGGACTGACC.................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................GACCAACTACTATCAGAACC.... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................TGCCCTCGGACTTCAATGGT.............................................................................................................................................................................................................................................................................................. 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................GTTATAGGAATCCAGAGCTTC........................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................AATCAAAAGCTATATGCTGCT............................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................................................................................................................GTATACATGTACTACGGACT........................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......................GCCCTTCGTCCTGCCCTCGGACTT..................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................................................................................................TATACATGTACTACGGACTGACCAACTAC.............. 29 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.CGGTGAGTGCACCTGCCAGGTGCCCTTC...................................................................................................................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...GTGAGTGCACCTGCCAGGTGCCCTTC...................................................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................................................................................................................ATACATGTACTACGGACTGAC..................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................AGTGCCCTTCGTCCT................................................................................................................................................................................................................................................................................................................. 15 1 13 0.69 9 0 0 3 5 0 0 1 0 0 0
..........................................................................................................................................................................................................................................................................................................TACATGTACTACGGACTGGCCT................... 22 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0
...................AGTGCCCTTCGTCCTG................................................................................................................................................................................................................................................................................................................ 16 1 4 0.50 2 0 0 1 1 0 0 0 0 0 0
....................GTGCCCTTCGTCCTGA............................................................................................................................................................................................................................................................................................................... 16 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0
..................AAGTGCCCTTCGTCCT................................................................................................................................................................................................................................................................................................................. 16 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................TACTACTGACTGACCGA.................. 17 2 10 0.30 3 0 0 3 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................ATTTAGTCAACTTCATTTAAAG.................................................. 22 3 4 0.25 1 0 0 0 0 1 0 0 0 0 0
..............TGCGGAGTGCCCTTCGTCCT................................................................................................................................................................................................................................................................................................................. 20 3 5 0.20 1 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................TTTATCACACAAGATTGGCT...................................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................AAATATTGTTGATCTGATTGA........................................................................................................................... 21 3 17 0.12 2 0 0 2 0 0 0 0 0 0 0
...........................................................................................................................................................................TATCATAGCAGCTTG......................................................................................................................................................... 15 1 10 0.10 1 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................CTTGGAGTAAATATGGATGA.................................................................................................................................... 20 3 11 0.09 1 0 0 0 0 0 0 0 0 0 1
....................GTGCCCTTCGTCCTGAA.............................................................................................................................................................................................................................................................................................................. 17 2 18 0.06 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................AAATCTACTACGGACT........................ 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................ATACTACTGACTGACC.................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0
...............GCGGAGTGCCCTTCGTCCT................................................................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0
..............TGCGGAGTGCCCTTCGTCC.................................................................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

CGCCACTCACGTGGACGGTCCACGGGAAGCAGGACGGGAGCCTGAAGTTACACTCAATATCCTTAGGTCTCGAAGTCATCGACAGGTCGAGTACATTAGTCGTGACTCAAATCCATCACTTCATCAATTTTAGTTTTCGATATACGACGAGAATATTAGACGTTCCATAAAATAGTATCGTCTAACCGAACCTTTTTTATAACTACTAGAACAACTATCACCTAAACCTAAGAAATATTATGAAATTTTTCTCTAAGAGTAAATTCATAAAGCAATTGAAGGAAATTTCCCACACCATATGTACATGATGCCTGACTGGTTGATGATAGTCTTGGTAGC
***********************************************************************************************************************..........((((.(((((((((.((((....((....))...))))))))))....(((((((..((((((.........)))))).)))))))....((((((((..((((...))))...))))))))))))))).....(((((((......)))))))..****************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 O001
Testis
 O002
Head
 M023
head
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M053
female body
............................................................CCTTAGGTCTCGAAGCCATA................................................................................................................................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................GACTCAAATCCATCACTTC......................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................GATGCCTGACTGGTTGATGA............. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
............................................................GCTTAGGTATCGAAGCCATC................................................................................................................................................................................................................................................................... 20 3 3 0.67 2 0 0 0 2 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................TGATGCCTGACTGATTGAG............... 19 2 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................AGAGTAACTTCATAA..................................................................... 15 1 18 0.22 4 2 0 0 0 0 0 2 0 0 0 0
..............................................................TTAGGTGTCGAAGCCAT.................................................................................................................................................................................................................................................................... 17 2 14 0.21 3 2 0 0 0 0 0 0 0 1 0 0
.GCCACTCACGCGGAC................................................................................................................................................................................................................................................................................................................................... 15 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0
.........................CAAGCAAGACGGGAGCCT........................................................................................................................................................................................................................................................................................................ 18 2 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................GTCGTAACTCAACTCCAACA............................................................................................................................................................................................................................. 20 3 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0
............................................................GCTTAGGTGTCGAAGCCATC................................................................................................................................................................................................................................................................... 20 3 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................AAGAGTAACTTCATAA..................................................................... 16 1 10 0.10 1 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................................................AGAGTAACTTCATAAA.................................................................... 16 1 10 0.10 1 0 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................GAACAACTATCGCCAAAACT............................................................................................................... 20 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 1
.............................................................CTTAGGTGTCGAAGCCA..................................................................................................................................................................................................................................................................... 17 2 17 0.06 1 0 0 0 0 0 0 0 0 1 0 0
...................................................................TCTCGAAGTCATAGA................................................................................................................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................CAGTCATAGACAGGTC........................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:15443913-15444251 - dsi_15455 GCGGT---GAGTGCACCTGCCAGGTGCCCTTCGTCCTGCCCTCGGACTTCAATGTGAGTTATAGGAATCCAGAG-------------------------------CTTCAGTA--G---CTGTCCAGCTCATGTAATCAGCACTGAGTTTAGGT----AGTGAAGTAGT-TAAAATCAAAAG------------CTATATGCTGCTCTTATAATCTGCAAGGTAT--------------TT---TATCATAGCAGATTGGCTTGGAA------------------------------------------------------AAAATAT---------TGATGATCTTGTTGA-------TA---GTGGATTTGGATTCTTTATAATACTT---------------TAAAAAGAGATTCTCATTTAAGTATTTCG--TTAACTT---CCTTTAAAGGGTGTGGTATACATGTACTACGGACTGACCAACTACTATCAGAACCATCG
droSec2 scaffold_17:154082-154434 - GCGGG---GATTGCACCTGCCAGGTGCCCTTCGTCCTGCCCTCGGACTTCAATGTGAGTTATAGGAATCCAGAG-------------------------------CTTCAGTA--G---CTGTCCAACTCATGTAATCAGCACTGAGTTTAGGT----AGTGAAGTAGT-TCAAATCAAAAG------------CTATATGATGCTCTTATAATCTGCAAGGTATTTATCAACATTGCTTT---TATCATAGCAGATTGGCTTGGAA------------------------------------------------------AAAATAT---------TGATGATTTTGTTGA-------TA---GTGGATTTGGATTCTTTATAATACTT---------------TAAAAAGAGATTCTCATTTAAGTATTTCG--TTAACTT---CCTTTAAAGGGTGTGGTATACATGTACTACGGACTGACCAACTACTATCAGAACCATCG
dm3 chrX:16334396-16334739 - GCGTT---ACGTGCCCCTGCGAGGTGCCCTTCGTCCTGCCCTCGGACTTCAATGTGAGTTATAGGGATCCAGAG-------------------------------CTTCAGTA--G---CTGTCCAGCTCAATTAATCAGCTCTTAGTTTAGGT----AGTGAAGTAGT-TCAAATGAAAAG------------CTATATGCTGCTTTTATAATCTGCAAGGCATTTATCAACATTGCTTT--------TAGCAG----GTTTGGAA------------------------------------------------------AAGATAT---------TGATGAT---ATTGA-------TA---GTGGATTTGGATTCCTTATAATACTT---------------TAGAAAGAGATTCTCATTTAAGTATTTCG--TTAACTTCCTTTTTTAAAGGGTGTGGTATACATGTACTACGGACTGACCAACTACTATCAGAACCATCG
droEre2 scaffold_4690:10763255-10763587 + GCAGTGTTGACTGCACCTGCGAGGTGCCCTTCGTCCTGCCCTCGGACTTCAATGTGAGTTAAAGAGATCCAGAG-------------------------------CTTTAGTA--G---CTGTTCAGCTCAAGTAATCGGCACAAAGTTTAGGT----AGTGAAATAGT-TCAAATCAAAAG------------CTATATGCTGA------------AATGGC---------------TTT---TATCATAGCAGATAGGTTTGAAA-----------------------------------------------------AAAAATAT---------TGATGATTCT--TGACAGTTAATAGTCGTGGATTTGAAGTTCTT--AATA-TC---------------TAAATAGAAATTTGTATTTATGTACTTAC--TTAC--T---TTTTTAAAGGGTGTGGTGTACATGTATTACGGACTGACCAATTACTACCAGAACCATCG
droYak3 X:10453422-10453770 - GCAGT---CAGTGCAACTGCGAGGTGCCCTTCGTCCTGCCCTCGGACTTTAATGTGAGTTAAAGAGATCCAGAG-------------------------------CATAAGTA--A---ATGCCCAGCTTAAGTAATCAATTGAG-------------AGTTAAGTAGT-TCACATAAAAAG------------CTATATGTGGCCTTTATAATCTAAAAAGTATTTATCA-------------------AGCAGATTGGTTTGAAC------------------------------------------------------GGAATAT---------TGATAATTTT--TGATAGTAAATACTAGTGGATTTGGATTTTTA--AATACTTAAAATGTTAACAAACTAAACAGTGAATTTCATTGAGGTATTTCG--TTAATTT---TTTTTTAAGGGTGTCGTATACATGTACTACGGACTGACCAACTACTATCAGAACCATCG
droEug1 scf7180000409110:212763-213084 + GCGGC---CAGTGCACCTGTCAAGTGCCTTTCGTTCTGCCCACGGACTTTAATGTGAGTTTAAAGGATCTTTCA------------------------TATACAGCTTCAGCATAGCAT-TG-------------------------TTTCCGTCATAAAAGAAGTAAT-GCAAAATA--AG------------TAA-------------TAATCT-CAA-------------------------------GATGAATGGTTTCCCAAAAATACTATATAACTAGATAGTAGATAATTATATTAGGATTTTTGCTTTAAAAATAATGTTCTGTGTTGTGGTGATTTC--TGATTGTT----------------------------------------------------------------TCTGTGTAT-TCGTATTACTTT---ATTTTAAAGGGAGTGGTGTATATGTACTACGGACTGACTAACTACTACCAAAACCATCG
droBia1 scf7180000302075:542779-542868 + GCGGC---AAGTGCACCTGCCAGGTGCCCTTCGTCCTCCCCAAGGACTTCAATGTGAGTTGGGGGTAGCCGGAA-------------------------------G------------------TAGTTTGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCTAACC
droTak1 scf7180000415351:99907-100105 - GCGGC---CAGTGCACCTGCCAGGTGCCCTTCGTCCTGCCCACGGACTTCAATGTGAGTTGGGGGGATCTAGAGACCCTGGGTTTGCCCTAAAGTGCATTTAACTCATCATCATGGCAC-AG----G------------ATTCCGAGCTTAAGT----------------ATAATTTAACT-TGGATATTTTGTTCCCACGATGTTTTCATAATCTTAAAATG---------------TTT---TATCAAAGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491023:1564033-1564134 + GTGGC---AAGTGCCGCTGCCAAGTGCCCTTCGTTCTGCCCAAGGACTTCAATGTGAGTTGAGGGGATCCTGAG-------------------------------C-----------------CCAGTTTAAGTAGCCCATCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAGTTCAAG
droRho1 scf7180000779966:58860-59056 + GCAGC---GAGTGTCCCTGCCAGGTGCCCTTCGTCCTGCCCAAGGACTTCAATGTGAGTTGGAGGGATCCTGAG-------------------------------C-----------------CCTGTTTAAGTAGCCCATCCAGAGTTCAAGT----GCCCCGTCAATTTCAATTTAACA----------------------GCTTTCTTTATCTTAAAAGA---------------TTTTATTATCATGGC---TCCGTATTGGA------------------------------------------------------AGGAGAT---------TAATAAC---GTT---------TA---GT----------------------------------------------------------------------------------------GGGT-----------------------------------------------
droFic1 scf7180000454077:2351491-2351551 + T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---TATTTAAAGGGTGTGGTCTACATGTACTACGGCCTGACGAACTACTACCAGAACCATCG
droKik1 scf7180000302586:104127-104183 + T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAAGGGCGTGGTGTACATGTACTATGGCCTGACCAACTACTACCAGAACCATCG
droAna3 scaffold_13335:1490430-1490490 - T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---CCGTTGCAGGGCAATGTTTACATGTACTATGGCCTGACCAACTTCTACCAGAATCATCG
droBip1 scf7180000395676:21789-21868 + ATTCA-------------------------------------------------------------------------------------------TATTTAATCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATTTCG---------------CCACAGGGCAATGTGTACATGTACTACGGCCTGACCAACTACTACCAGAATCATCG
dp5 XL_group1e:3088738-3088789 + ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGCGACGTATACATGTATTATGGCCTGACAAACTACTATCAAAACCATCG
droPer2 scaffold_17:22795-22846 + ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGCGACGTATACATGTATTATGGCCTGACAAACTACTATCAAAACCATCG
droWil2 scf2_1100000004590:2480942-2481017 - TGAAT---A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAA--TTA-CTT---CCATTGCAGGGCGATGTATATATGTATTATGGCTTGACCAATTACTACCAAAATCATCG
droVir3 scaffold_12970:2156670-2156721 + ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGCGACGTGTACATGTACTATGGCCTGACCAATTACTATCAGAATCATCG
droMoj3 scaffold_6359:3371768-3371819 + ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGCAACGTTTACATGTATTATGGCCTAACTAATTACTATCAGAACCATCG
droGri2 scaffold_14853:6846622-6846673 - ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGCGATGTTTACATGTACTATGGCCTGACCAATTACTATCAGAACCATCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GCGGT---GAGTGCACCTGCCAGGTGCCCTTCGTCCTGCCCTCGGACTTCAATGTGAGTTATAGGAATCCAGAG-------------------------------CTTCAGTA--G---CTGTCCAGCTCATGTAATCAGCACTGAGTTTAGGT----AGTGAAGTAGT-TAAAATCAAAAG------------CTATATGCTGCTCTTATAATCTGCAAGGTAT--------------TT---TATCATAGCAGATTGGCTTGGAA------------------------------------------------------AAAATAT---------TGATGATCTTGTTGA-------TA---GTGGATTTGGATTCTTTATAATACTT---------------TAAAAAGAGATTCTCATTTAAGTATTTCG--TTAACTT---CCTTTAAAGGGTGTGGTATACATGTACTACGGACTGACCAACTACTATCAGAACCATCGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATGTACTACGGACT........................181120.001200635700000000000000
.......................GTGCCCTTCGTCCTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................161129.0932000000002263550000000
.......................GTGCCCTTCGTCCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15213.0026000000101690000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATGTACTACGGACTGACC....................22111.001103710000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATGTACTACGGACC........................18110.001004600000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATGTACTACGGACG........................1815.00503200000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTGGTATACATGTACTACGGACT........................2614.00403100000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATGTACTACGGACTGACCAACTACT.............2913.00302100000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATGTACTACGGACTGACCAACT................2612.00200200000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTACGGACTGACCAAC.................1912.00200200000000000000
...........................CCTTCGTCCTGCCCTCGGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00220000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATGTACTACGGACTGACCAACTAC..............2712.00200000002000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATACATGTACTACGGACT........................2111.00101000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTACTATCAGAACCATC.1911.00100100000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAACTACTATCAGAA......1811.00100010000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTACGGACTGACCAACT................1911.00110000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACGGACTGACCAACTACT.............2011.00100100000000000000
..............................TCGTCCTGCCCTCGGACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
......................................................................................................................................................................................................................................................................................................................................AT---------TGATGATCTTGTTGA-------TA---GT...........................................................................................................................................2111.00110000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACATGTACTACGGACT........................1911.00101000000000000000
.......................................CCTCGGACTTCAATGTGAGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTACTACGGACTGACCAACTACTATC..........2911.00100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACGGACTGACCAACTACT.............2111.00101000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTACTACGGACTGACC....................1811.00101000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAACTACTATCAGAACC....2011.00100100000000000000
....................................TGCCCTCGGACTTCAATGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
.........................................................GTTATAGGAATCCAGAG-------------------------------CTTC............................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.............................................................................................................................................................................AATCAAAAG------------CTATATGCTGCT...........................................................................................................................................................................................................................................................................................................2111.00100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACATGTACTACGGACT........................2011.00101000000000000000
.........................GCCCTTCGTCCTGCCCTCGGACTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACATGTACTACGGACTGACCAACTAC..............2911.00100000001000000000
.CGGT---GAGTGCACCTGCCAGGTGCCCTTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010000000000000
...GT---GAGTGCACCTGCCAGGTGCCCTTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATGTACTACGGACTGAC.....................2111.00100100000000000000
.......................GTGCCCTTCGTCCTGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1620.50100000000100000000
.......................GTGCCCTTCGTCCTGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17180.06100000000100000000
droSec2
GCGGG---GATTGCACCTGCCAGGTGCCCTTCGTCCTGCCCTCGGACTTCAATGTGAGTTATAGGAATCCAGAG-------------------------------CTTCAGTA--G---CTGTCCAACTCATGTAATCAGCACTGAGTTTAGGT----AGTGAAGTAGT-TCAAATCAAAAG------------CTATATGATGCTCTTATAATCTGCAAGGTATTTATCAACATTGCTTT---TATCATAGCAGATTGGCTTGGAA------------------------------------------------------AAAATAT---------TGATGATTTTGTTGA-------TA---GTGGATTTGGATTCTTTATAATACTT---------------TAAAAAGAGATTCTCATTTAAGTATTTCG--TTAACTT---CCTTTAAAGGGTGTGGTATACATGTACTACGGACTGACCAACTACTATCAGAACCATCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATGTACTACGGACTGACC....................2212.0020020
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTACTACGGACTGACCAA..................2011.0010010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGTACTACGGACTGACC....................2011.0010010
.........................................................................................................................................................................................................................................................................................................................................................TTGTTGA-------TA---GTGGATTTGGA..................................................................................................................................2011.0011000
.........................GCCCTTCGTCCTGCCCTCGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACTACGGACTGACCA...................1811.0010010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATGTACTACGGACTGAC.....................2111.0010010
................CTGCCAGGTGCCCTTCGTCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
dm3
GCGTT---ACGTGCCCCTGCGAGGTGCCCTTCGTCCTGCCCTCGGACTTCAATGTGAGTTATAGGGATCCAGAG-------------------------------CTTCAGTA--G---CTGTCCAGCTCAATTAATCAGCTCTTAGTTTAGGT----AGTGAAGTAGT-TCAAATGAAAAG------------CTATATGCTGCTTTTATAATCTGCAAGGCATTTATCAACATTGCTTT--------TAGCAG----GTTTGGAA------------------------------------------------------AAGATAT---------TGATGAT---ATTGA-------TA---GTGGATTTGGATTCCTTATAATACTT---------------TAGAAAGAGATTCTCATTTAAGTATTTCG--TTAACTTCCTTTTTTAAAGGGTGTGGTATACATGTACTACGGACTGACCAACTACTATCAGAACCATCGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTGGTATACATGTACTACGGACT........................26115.00150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000383000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTGGTATACATGTACTACGGAC.........................2517.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACTACGGACTGACCAACT................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTATACATGTACTACGGACT........................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTGGTATACATGTACTACGGA..........................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTACGGACTGACCAACT................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CCTTCGTCCTGCCCTCGGACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACTACGGACTGACCA...................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTGGTATACATGTACTACGGACTG.......................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTATACATGTACTACGGACTGACC....................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATGTACTACGGACTGACCAAC.................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATGTACTACGGACTGACCAAC.................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TGCCCTTCGTCCTGCCCTCGGACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACATGTACTACGGACT........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CCCTTCGTCCTGCCCTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................AGTTATAGGGATCCAGAG-------------------------------CTT.............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................GATTTGGATTCCTTATAATACTT---------------TAGA................................................................................................2711.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................TGCTTTTATAATCTGCAAGGC..........................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................ATATGCTGCTTTTATAATCTG................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................TTTAGGT----AGTGAAGTAGT-TC.............................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACGGACTGACCAACTAC..............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATGTACTACGGACTGACCA...................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................ATACTT---------------TAGAAAGAGATT........................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................TTT--------TAGCAG----GTTTGGAA------------------------------------------------------AAGAA...................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTAAAGGGTGTGGTATC.......................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TGCGAGGTGCCCTTCGTCCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................................................................................................................................................................................................................................................CTTATAATACTT---------------TAGAAAGAG...........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............CCTGCGAGGTGCCCTTCGTCCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTATACATGTACTACGG...........................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTAAAGGGTGTGGTATACATGTA.................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..................................CCTGCCCTCGGACTTCAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TGCTTT--------TAGCAG----GTTTGGAA------------------------------------------------------AAGAT...................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................TGCTGCTTTTATAATCTGCAAGGCATT.......................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTAAAGGGTGTGGT..........................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACATGTACTACGGACTGAC.....................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCAACTACTATCAGAACC....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTATACATGTACTACGGACTGACCA...................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTTTTTAAAGGGTGTGGTA.........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..............................................................................................................................................................................................................................................TTT--------TAGCAG----GTTTGGAA------------------------------------------------------AAGA....................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.............................................................TAGGGATCCAGAG-------------------------------CTTCAGTA--G---CTGT..............................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................TT---------------TAGAAAGAGATTCTCATTT.................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTGGTATACATGTACTACGGACTGAC.....................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................TTGA-------TA---GTGGATTTGGATTCC..............................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTACTACGGACTGACCAACTA...............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................AATACTT---------------TAGAAAGAGATTCT......................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTACGGACTGACCAACT................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTACTACGGACTGACCAACT................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CTTCGTCCTGCCCTCGGACTTCAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATGTACTACGGACTGACC....................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGACTGACCAACTACTATCA.........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................TTGCTTT--------TAGCAG----GTTTGGAA------------------------------------------------------AAGATA..................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTAAAGGGTGTGGTACC.......................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
droEre2
GCAGTGTTGACTGCACCTGCGAGGTGCCCTTCGTCCTGCCCTCGGACTTCAATGTGAGTTAAAGAGATCCAGAG-------------------------------CTTTAGTA--G---CTGTTCAGCTCAAGTAATCGGCACAAAGTTTAGGT----AGTGAAATAGT-TCAAATCAAAAG------------CTATATGCTGA------------AATGGC---------------TTT---TATCATAGCAGATAGGTTTGAAA-----------------------------------------------------AAAAATAT---------TGATGATTCT--TGACAGTTAATAGTCGTGGATTTGAAGTTCTT--AATA-TC---------------TAAATAGAAATTTGTATTTATGTACTTAC--TTAC--T---TTTTTAAAGGGTGTGGTGTACATGTATTACGGACTGACCAATTACTACCAGAACCATCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACGGACTGACCAATTA...............1911.0010000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGTATTACGGACTGAC.....................2111.0010000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGTATTACGGACTGACCA...................2311.0010001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTATTACGGACTGACCAAT.................2211.0010000010
.........................................................GTTAAAGAGATCCAGAG-------------------------------CTTTAA..........................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
................CTGCGAGGTGCCCTTCGTCCTGCCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001000
...............................CGTCCTGCCCTCGGACTTCAATGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
.............CACCTGCGAGGTGCCCTTCGTCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGTATTACGGACT........................1811.0010000010
.......................................................................................................................................................................GT-TCAAATCAAAAG------------CTATATGC...............................................................................................................................................................................................................................................................................................................2211.0010100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTACGGACTGACCAAT.................1911.0010000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGTACATGTATTACGGACTGA......................2511.0010000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTATTACGGACTGACC....................1811.0010000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAATTACTACCAGAACCAC..2211.0010100000
..........CTGCACCTGCGAGGTGCCCTTCGTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGTACATGTATTACGGACTGAC.....................2611.0010000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAATTACTACCAGAAC.....1911.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGTACATGTATTACGGACT........................2311.0010000010
droYak3
GCAGT---CAGTGCAACTGCGAGGTGCCCTTCGTCCTGCCCTCGGACTTTAATGTGAGTTAAAGAGATCCAGAG-------------------------------CATAAGTA--A---ATGCCCAGCTTAAGTAATCAATTGAG-------------AGTTAAGTAGT-TCACATAAAAAG------------CTATATGTGGCCTTTATAATCTAAAAAGTATTTATCA-------------------AGCAGATTGGTTTGAAC------------------------------------------------------GGAATAT---------TGATAATTTT--TGATAGTAAATACTAGTGGATTTGGATTTTTA--AATACTTAAAATGTTAACAAACTAAACAGTGAATTTCATTGAGGTATTTCG--TTAATTT---TTTTTTAAGGGTGTCGTATACATGTACTACGGACTGACCAACTACTATCAGAACCATCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATGTACTACGGACTGACC....................2214.00430000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACATGTACTACGGACTGACC....................2412.00201100000000
.......................GTGCCCTTCGTCCTGCCCTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACATGTACTACGGACC........................2011.00100100000000
..........GTGCAACTGCGAGGTGCCCTTCGTCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
............GCAACTGCGAGGTGCCCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTACGGACTGACCAACTACT.............2211.00101000000000
...GT---CAGTGCAACTGCGAGGTGCCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
............GCAACTGCGAGGTGCCCTTCGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTACGGACTGACCAACTAC..............2111.00101000000000
............GCAACTGCGAGGTGCCCTTCGTCCTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACATGTACTACGGACT........................2011.00101000000000
...................CGAGGTGCCCTTCGTCCTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTATACATGTACTACGGACTGACC....................2511.00101000000000
...GT---CAGTGCAACTGCGAGGTGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGTACTACGGACTGACC....................2011.00100100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAACTACTATCAGAACCATC.2311.00101000000000
...........................CCTTCGTCCTGCCCTCGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
........................TGCCCTTCGTCCTGCCCTCGGACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATGTACTACGGACT........................1811.00100100000000
droEug1
GCGGC---CAGTGCACCTGTCAAGTGCCTTTCGTTCTGCCCACGGACTTTAATGTGAGTTTAAAGGATCTTTCA------------------------TATACAGCTTCAGCATAGCAT-TG-------------------------TTTCCGTCATAAAAGAAGTAAT-GCAAAATA--AG------------TAA-------------TAATCT-CAA-------------------------------GATGAATGGTTTCCCAAAAATACTATATAACTAGATAGTAGATAATTATATTAGGATTTTTGCTTTAAAAATAATGTTCTGTGTTGTGGTGATTTC--TGATTGTT----------------------------------------------------------------TCTGTGTAT-TCGTATTACTTT---ATTTTAAAGGGAGTGGTGTATATGTACTACGGACTGACTAACTACTACCAAAACCATCGSizeHit CountTotal NormTotal
No Reads
droBia1
GCGGC---AAGTGCACCTGCCAGGTGCCCTTCGTCCTCCCCAAGGACTTCAATGTGAGTTGGGGGTAGCCGGAA-------------------------------G------------------TAGTTTGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCTAACCSizeHit CountTotal NormTotal
No Reads
droTak1
GCGGC---CAGTGCACCTGCCAGGTGCCCTTCGTCCTGCCCACGGACTTCAATGTGAGTTGGGGGGATCTAGAGACCCTGGGTTTGCCCTAAAGTGCATTTAACTCATCATCATGGCAC-AG----G------------ATTCCGAGCTTAAGT----------------ATAATTTAACT-TGGATATTTTGTTCCCACGATGTTTTCATAATCTTAAAATG---------------TTT---TATCAAAGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GTGGC---AAGTGCCGCTGCCAAGTGCCCTTCGTTCTGCCCAAGGACTTCAATGTGAGTTGAGGGGATCCTGAG-------------------------------C-----------------CCAGTTTAAGTAGCCCATCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAGTTCAAGSizeHit CountTotal NormTotal
No Reads
droRho1
GCAGC---GAGTGTCCCTGCCAGGTGCCCTTCGTCCTGCCCAAGGACTTCAATGTGAGTTGGAGGGATCCTGAG-------------------------------C-----------------CCTGTTTAAGTAGCCCATCCAGAGTTCAAGT----GCCCCGTCAATTTCAATTTAACA----------------------GCTTTCTTTATCTTAAAAGA---------------TTTTATTATCATGGC---TCCGTATTGGA------------------------------------------------------AGGAGAT---------TAATAAC---GTT---------TA---GT----------------------------------------------------------------------------------------GGGT-----------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---TATTTAAAGGGTGTGGTCTACATGTACTACGGCCTGACGAACTACTACCAGAACCATCGSizeHit CountTotal NormTotal
No Reads
droKik1
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAAGGGCGTGGTGTACATGTACTATGGCCTGACCAACTACTACCAGAACCATCGSizeHit CountTotal NormTotal
No Reads
droAna3
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---CCGTTGCAGGGCAATGTTTACATGTACTATGGCCTGACCAACTTCTACCAGAATCATCGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGTACTATGGCCTGACC....................2011.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAACTTCTACCAGAATCATC.2311.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTTACATGTACTATGGCCT........................2211.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTACATGTACTATGGCCT........................2111.001001000
droBip1
ATTCA-------------------------------------------------------------------------------------------TATTTAATCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATTTCG---------------CCACAGGGCAATGTGTACATGTACTACGGCCTGACCAACTACTACCAGAATCATCGSizeHit CountTotal NormTotal
No Reads
dp5
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGCGACGTATACATGTATTATGGCCTGACAAACTACTATCAAAACCATCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACATGTATTATGGCCT........................2011.0010100000000
droPer2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGCGACGTATACATGTATTATGGCCTGACAAACTACTATCAAAACCATCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTATACATGTATTATGGCCTG.......................2214.004400000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGCCTGACAAACTACT.............2112.002110000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGCCTGACAAACTACTATC..........2411.001010000
droWil2
TGAAT---A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAA--TTA-CTT---CCATTGCAGGGCGATGTATATATGTATTATGGCTTGACCAATTACTACCAAAATCATCGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGCTTGACCAATTA...............1911.00101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATGTATTATGGCTTGACCA...................2511.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATGTATTATGGCTTGACCAAT.................2511.00101000
droVir3
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGCGACGTGTACATGTACTATGGCCTGACCAATTACTATCAGAATCATCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTACATGTACTATGGCC.........................2011.001000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCAATTACTATCAGAATCAT..2311.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTGTACATGTACTATG............................1911.001000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACTATGGCCTGACCAAT.................2011.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGCCTGACCAATTACTATCAGA.......2511.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGGCCTGACCAATTACTATCA.........2411.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGTACTATGGCCTGACC....................2211.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTGTACATGTACTATGGCCTGACC....................2711.001000100000000000000000000000000000000000000000000000000000000000
droMoj3
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGCAACGTTTACATGTATTATGGCCTAACTAATTACTATCAGAACCATCGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGTTTACATGTATTATGGCCTAA......................2611.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGCCTAACTAATTACT.............2111.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTTACATGTATTATGGC..........................2011.001100000
droGri2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGCGATGTTTACATGTACTATGGCCTGACCAATTACTATCAGAACCATCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 12:44 AM