ID:

dsi_1545

 Coordinate:

2r:879447-879596 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.8 -17.5 -17.5

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron-

Sense Strand Reads

TTTAAGTTTTTCTCATTTTATTTCCCAATATCTATCGACATCCCAGAAAAATGAAAAAAAATCACACTAGCTGAGTAACGGGGATCTGATAGTCGTGTAACTCAACTATAGCATTTCCTCTTGTTTTAAATGAACTTTCTTCAAAAGTTTTTGTAATGATAATACGTATATCCTAATACATAATTCCTCATTTGTTGCAGAACGTAGAACTTCCAGAATCGTTTTCTTTGGAACTAAAGAATTTGTTGGA
**************************************************........................((((((((((...((((..(((((...(((.....((((........))))(((...(((((((.....)))))))...))))))..)))))..))))............)))))....)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 M023
head
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 GSM343915
embryo
....................................................................................................................................................................................................TATGAACGTAGAACTTCCAGAATCGTT........................... 27 3 1 24.00 24 20 2 0 0 0 1 0 0 0 1 0 0
................................................................................................................................................................................................................................TCTTTGGAACTAAAGAATTTGTTGGA 26 0 1 10.00 10 5 3 0 0 0 0 1 0 0 0 1 0
...............................................................................................................................................................................................................................TTCTTTGGAACTAAAGAATTTGTTGGA 27 0 1 7.00 7 3 3 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................TGAACGTAGAACTTCCAGAATCGTT........................... 25 1 1 3.00 3 2 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................TTTGGAACTAAAGAATTTGTTGGA 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TGAACGTAGAACTTCCAGAATTGTT........................... 25 2 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GAACGTAGAACTTCCAGAATTGTTT.......................... 25 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TCGTTTTCTTTGGAACTAAAGAATT....... 25 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................ATGAACGTAGAACTTCCAGAAT............................... 22 2 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TGAACGTAGAACTTCCAGAATTGTTT.......................... 26 2 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GTAGAACTTCCAGAATCGT............................ 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GTAGAACTTCCAGAATCGTTT.......................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................AACGTAGAACTTCCAGAATTGTTTTCTT...................... 28 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TGCAGAACGTAGAACTTCCAGAATTGTT........................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGAACGTAGAACTTCCAGAAT............................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................TATGAACGTAGAACTTCCAGAA................................ 22 3 2 1.00 2 0 0 0 1 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................TATGAACGTAGAACTTCCAGAAT............................... 23 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................CGTAGAACTTCCAGAATCGTTTTCTT...................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGAACGTAGAACTTCCAGAA................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................TTCTTTGGAACTAAAGAATTTGTTGG. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................CTAAAGAATTTGTTGG. 16 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CTTTGGAACTAAAGAATTTGTTGGA 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TTTGGAACTAAAGAATTTGTT... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................TGAACGTAGAACTTCCAGAATTGTTTT......................... 27 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGAACGTAGAACTTCCAGAATTGTTT.......................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TTCCAGAATCGTTTTCTTTGGAACT............... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................AAAAATCACACTAGCTGAGTAACGGGGA...................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................ATGAACGTAGAACTTCCAGAATCGTT........................... 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................ACGTAGAACTTCCAGAATCGTTT.......................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CTTTGGAACTAAAGAATTTGTTG.. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GAACGTAGAACTTCCAGAATCGT............................ 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TTGTTGCAGAACGTAGAACTTCC.................................... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GAATTGTTTTCTTTGGAACTAAAGAATT....... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TATGAACGTAGAACTTCCAGAATCGT............................ 26 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................TGGAATGTTAATACGTATATCG............................................................................. 22 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1
......................................................................................................................................................................................................TTAACGTAGAACTTCCAGAATTGTTTT......................... 27 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................GATAGTCGTGTAACTCAACT............................................................................................................................................... 20 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................TGAGTAACGGGAATCTGATAGTCGT.......................................................................................................................................................... 25 1 16 0.38 6 0 0 0 0 0 0 6 0 0 0 0 0
.....................................................................GCTGAGTAACGGGGATCTG.................................................................................................................................................................. 19 0 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................ATCTGATAGTCGTGTAACTCTACTAT............................................................................................................................................. 26 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................CTAGCTGAGTAACGGGGATCTGATGG.............................................................................................................................................................. 26 1 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................ATCTGATAGTCGTGGAACTCAACTAT............................................................................................................................................. 26 1 11 0.18 2 1 0 0 0 0 1 0 0 0 0 0 0
.......................................................................TGAGTAACGGGGATCTGATAGGCG........................................................................................................................................................... 24 1 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................TGAGTAACGGGCATCTGATAGTCGT.......................................................................................................................................................... 25 1 14 0.14 2 0 0 0 0 0 0 0 0 0 2 0 0
..............................TCTATCGAAATCCCAGAAAAATTAAAA................................................................................................................................................................................................. 27 2 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................CACATTAGCTGAGTAACGGGGATCTGA................................................................................................................................................................. 27 1 8 0.13 1 0 0 0 0 0 0 0 0 0 0 1 0
..............................................................CACACTTGCTGAGTAACGGGGATCTGA................................................................................................................................................................. 27 1 8 0.13 1 0 0 0 0 0 0 0 0 0 0 1 0
.......................................................................TGAGTAACGGGCATTTGATAGTCGTCT........................................................................................................................................................ 27 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................ACGTTAAACTTCCAGATTC.............................. 19 3 12 0.08 1 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................CTGAGTAACAGGGATCTGATA............................................................................................................................................................... 21 1 19 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................TTAGCTGAGTAACGGGGATCTGATAGT............................................................................................................................................................. 27 1 19 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0
...........................................................................TAACGTGCATCTGATAGTCGTAT........................................................................................................................................................ 23 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
.........TTGTCATTTTATTTCGCAATATGTATCGA.................................................................................................................................................................................................................... 29 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................AGCAGAGTGACGGGGATC.................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................GCACACTAGCTGAGTAACGGG........................................................................................................................................................................ 21 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................TGAGTAACGGGGATTTAATAG.............................................................................................................................................................. 21 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

AAATTCAAAAAGAGTAAAATAAAGGGTTATAGATAGCTGTAGGGTCTTTTTACTTTTTTTTAGTGTGATCGACTCATTGCCCCTAGACTATCAGCACATTGAGTTGATATCGTAAAGGAGAACAAAATTTACTTGAAAGAAGTTTTCAAAAACATTACTATTATGCATATAGGATTATGTATTAAGGAGTAAACAACGTCTTGCATCTTGAAGGTCTTAGCAAAAGAAACCTTGATTTCTTAAACAACCT
**************************************************........................((((((((((...((((..(((((...(((.....((((........))))(((...(((((((.....)))))))...))))))..)))))..))))............)))))....)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 M053
female body
 SRR902009
testis
 SRR902008
ovaries
.........................GCTATAGAGAGCTGTAG................................................................................................................................................................................................................ 17 2 20 3.95 79 79 0 0 0 0 0 0 0 0
..........AGAGTAAAATAAAGGGTTATAGATA....................................................................................................................................................................................................................... 25 0 11 2.55 28 6 5 6 6 3 0 2 0 0
.........................GCTATAGAGAGCTGTAGG............................................................................................................................................................................................................... 18 2 10 1.40 14 14 0 0 0 0 0 0 0 0
.......................................................................................................................................AAAGAAGTTTTCAAAAAC................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0
..ATTCAAAAAGAGTAA......................................................................................................................................................................................................................................... 15 0 4 1.00 4 0 4 0 0 0 0 0 0 0
.........................GCTATAGAGAGCTGTAGGGG............................................................................................................................................................................................................. 20 3 10 1.00 10 10 0 0 0 0 0 0 0 0
.........................GCTATAGAGAGCTGTAGTG.............................................................................................................................................................................................................. 19 3 20 0.90 18 18 0 0 0 0 0 0 0 0
...........GAGTAAAATAAAGGGTTATAGATA....................................................................................................................................................................................................................... 24 0 13 0.77 10 7 0 1 0 2 0 0 0 0
.........AAGAGTAAAATAAAGGGTTATAGATA....................................................................................................................................................................................................................... 26 0 10 0.70 7 0 4 1 2 0 0 0 0 0
.........................GCTATAGAGAGCTGTAGTGT............................................................................................................................................................................................................. 20 3 16 0.56 9 9 0 0 0 0 0 0 0 0
.......................GGGTTATAGATAGCTGTAGGGTCTTT......................................................................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................TGACAGAAGTTTTCAAAAAGAAT.............................................................................................. 23 3 2 0.50 1 0 0 0 0 0 0 1 0 0
................................ATAGCTGTAGGGTGTTTTTACT.................................................................................................................................................................................................... 22 1 2 0.50 1 0 0 1 0 0 0 0 0 0
.......AAAAGAGTAAAATAAAGGGTTATAGATA....................................................................................................................................................................................................................... 28 0 10 0.50 5 0 3 0 1 1 0 0 0 0
.......AAAAGAGTAAAATAAAGGGTTATA........................................................................................................................................................................................................................... 24 0 14 0.43 6 0 1 1 4 0 0 0 0 0
...........................TATAAATAGCTGTAGGGTGTTTTTACT.................................................................................................................................................................................................... 27 2 5 0.40 2 0 0 1 0 1 0 0 0 0
........AAAGAGTAAAATAAAGGGTTATAGATA....................................................................................................................................................................................................................... 27 0 10 0.40 4 0 1 1 2 0 0 0 0 0
............................ATAAATAGCTGTAGGGTGTTTTTACT.................................................................................................................................................................................................... 26 2 5 0.40 2 0 0 1 0 1 0 0 0 0
...................TAAAGGGTTATAGATA....................................................................................................................................................................................................................... 16 0 20 0.35 7 7 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................AAAGTGACCTTGATTTCTT......... 19 2 3 0.33 1 0 1 0 0 0 0 0 0 0
......AAAAAGAATAAAATAAAGGGTTATAGATA....................................................................................................................................................................................................................... 29 1 20 0.30 6 0 0 2 0 4 0 0 0 0
.............................ATGATACCTGTAGGGTCTTTTTACT.................................................................................................................................................................................................... 25 3 4 0.25 1 0 0 0 0 1 0 0 0 0
........TAAGAGTAAAATAAAGGGTTATAGATA....................................................................................................................................................................................................................... 27 1 12 0.25 3 0 1 1 1 0 0 0 0 0
.........................GCTATAGAGAGCTGTAGGG.............................................................................................................................................................................................................. 19 2 5 0.20 1 1 0 0 0 0 0 0 0 0
............................ATAGATAGCCGTAGGGTCT........................................................................................................................................................................................................... 19 1 10 0.20 2 0 0 0 0 0 0 0 2 0
......AAAAAGAGTAAAATAAAGGGTTATAGATA....................................................................................................................................................................................................................... 29 0 10 0.20 2 0 2 0 0 0 0 0 0 0
ATATTCAAAAAGAGTA.......................................................................................................................................................................................................................................... 16 1 10 0.20 2 0 2 0 0 0 0 0 0 0
.........................GCTATAGAGAGCTGTAGGGT............................................................................................................................................................................................................. 20 2 5 0.20 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AACGTCTGACATCTTGAA...................................... 18 2 5 0.20 1 0 0 0 0 0 0 0 1 0
..............................AAATAGCTGTAGGGTGTTTTTACT.................................................................................................................................................................................................... 24 2 5 0.20 1 0 0 1 0 0 0 0 0 0
..................ATAAACGGCTATAGAGAGCTG................................................................................................................................................................................................................... 21 3 6 0.17 1 1 0 0 0 0 0 0 0 0
.......................GGGTTATAAATAGCTGTAGGGTGTTTT........................................................................................................................................................................................................ 27 2 6 0.17 1 0 0 0 0 1 0 0 0 0
.........................GTTATAGAGAGCTGTAGG............................................................................................................................................................................................................... 18 1 6 0.17 1 1 0 0 0 0 0 0 0 0
.........................GCTATAGAGAGCTGTAGGGTG............................................................................................................................................................................................................ 21 3 6 0.17 1 1 0 0 0 0 0 0 0 0
...........................TATAGATAGCTGTAGGGTCTATTT....................................................................................................................................................................................................... 24 1 6 0.17 1 0 0 0 1 0 0 0 0 0
............................ATAGATAGCTGTAGGGTCTATTT....................................................................................................................................................................................................... 23 1 6 0.17 1 0 0 0 1 0 0 0 0 0
..........................CTATAGAGAGCTGTAGTG.............................................................................................................................................................................................................. 18 3 20 0.15 3 3 0 0 0 0 0 0 0 0
..............TAAAATAAAGGGTTATAGATA....................................................................................................................................................................................................................... 21 0 20 0.15 3 2 0 1 0 0 0 0 0 0
............................ATAGAGAGCTGTAGG............................................................................................................................................................................................................... 15 1 14 0.14 2 2 0 0 0 0 0 0 0 0
.........TAGAGTAAAATAAAGGGTTATAGATA....................................................................................................................................................................................................................... 26 1 15 0.13 2 0 1 0 1 0 0 0 0 0
...........................TATAAATAGCTGTAGGGTGTTTT........................................................................................................................................................................................................ 23 2 15 0.13 2 0 0 0 0 2 0 0 0 0
..ATTCAAAAAGAGTAAG........................................................................................................................................................................................................................................ 16 1 15 0.13 2 0 2 0 0 0 0 0 0 0
..........AGAGTAAAATAAAGGGTTATAGATAGCT.................................................................................................................................................................................................................... 28 0 8 0.13 1 0 0 0 1 0 0 0 0 0
..........AGAGTAAAATAAAGGGTCATAGATA....................................................................................................................................................................................................................... 25 1 17 0.12 2 0 2 0 0 0 0 0 0 0
........TTAGAGTAAAATAAAGGGTTATAGATA....................................................................................................................................................................................................................... 27 2 17 0.12 2 0 0 0 1 1 0 0 0 0
.............................AAAATAGCTGTAGGGTGTTTTTACT.................................................................................................................................................................................................... 25 3 9 0.11 1 0 0 0 0 1 0 0 0 0
........................GGTTATAAATAGCTGTAGGGTGTTTTT....................................................................................................................................................................................................... 27 2 9 0.11 1 0 0 0 0 1 0 0 0 0
..........AGAGTAAAATAAAGGGTTATAGATAGC..................................................................................................................................................................................................................... 27 0 9 0.11 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................TGAAGGCCTTAGCAA........................... 15 1 10 0.10 1 0 0 0 1 0 0 0 0 0
...............AAAATAAAGGGTTATAGATA....................................................................................................................................................................................................................... 20 0 20 0.10 2 0 1 0 0 0 0 0 0 1
......CAAAAGAGTAAAATAAAGGGTTATA........................................................................................................................................................................................................................... 25 1 20 0.10 2 0 0 0 0 0 0 0 0 2
..............................................................................................................................................................................................................................AAAGTGACCTTGATTTCT.......... 18 2 10 0.10 1 0 1 0 0 0 0 0 0 0
.........................GCTATAGAGAGCTGTAGGGC............................................................................................................................................................................................................. 20 3 11 0.09 1 1 0 0 0 0 0 0 0 0
......AAAAAGAGTAAAATAAAGGGTTATAGAT........................................................................................................................................................................................................................ 28 0 11 0.09 1 0 0 1 0 0 0 0 0 0
..........AGAGTAAAATAAAGGGTTATAGAT........................................................................................................................................................................................................................ 24 0 12 0.08 1 0 1 0 0 0 0 0 0 0
........ATAGAGTAAAATAAAGGGTTATAGATA....................................................................................................................................................................................................................... 27 1 14 0.07 1 0 0 0 1 0 0 0 0 0
......AAAAAGAGTAAAATAAAGGGTTATA........................................................................................................................................................................................................................... 25 0 14 0.07 1 0 0 0 0 0 0 0 0 1
......AAAAAGAGTAAAATAAAGGGTTATATATA....................................................................................................................................................................................................................... 29 1 14 0.07 1 0 1 0 0 0 0 0 0 0
.......TAAAGAGTAAAATAAAGGGTTATAGATA....................................................................................................................................................................................................................... 28 1 14 0.07 1 0 1 0 0 0 0 0 0 0
.........................GCTATAGAGAGCTGTCGGG.............................................................................................................................................................................................................. 19 3 15 0.07 1 1 0 0 0 0 0 0 0 0
............AGTAAAATAAAGGGTTATAGATA....................................................................................................................................................................................................................... 23 0 15 0.07 1 0 0 0 1 0 0 0 0 0
.................................................................................................AGTGTCTTGATATCGTAAAG..................................................................................................................................... 20 3 16 0.06 1 0 0 1 0 0 0 0 0 0
.............GTAAAATAAAGGGTTATAGATA....................................................................................................................................................................................................................... 22 0 17 0.06 1 1 0 0 0 0 0 0 0 0
...........GAGTAAAATAAAGGGTTAT............................................................................................................................................................................................................................ 19 0 19 0.05 1 1 0 0 0 0 0 0 0 0
.......AAAAGAATAAAATAAAGGGTTATAGATA....................................................................................................................................................................................................................... 28 1 20 0.05 1 0 0 0 0 1 0 0 0 0
........CAAGAGTAAAATAAAGGGTTATAGATA....................................................................................................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0 0 0 0 0
..................ATAAAGGGTTATAGATA....................................................................................................................................................................................................................... 17 0 20 0.05 1 0 0 0 0 1 0 0 0 0
.....................AAGGGTTATAGATAGC..................................................................................................................................................................................................................... 16 0 20 0.05 1 1 0 0 0 0 0 0 0 0
..................................................................GATCGACTCATTGCC......................................................................................................................................................................... 15 0 20 0.05 1 1 0 0 0 0 0 0 0 0
................AAATAAAGGGTTATAGATA....................................................................................................................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AAAGTCTTAGCAAAA......................... 15 1 20 0.05 1 0 0 1 0 0 0 0 0 0
.................AATAAAGGGTTATAGATA....................................................................................................................................................................................................................... 18 0 20 0.05 1 0 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:879397-879646 - dsi_1545 TTTAAGT------TTTT------CTCATTTTA-TTTCCCAATATCTATC---------GACATCCCAGA-------------AAAATGAAA----------------------------------------------------AAAAATCA-CACTAGCTGAGTAACGGGGATCT----------GATAGTCGTGTAA-CTCAACT-ATAGCA-TTTC--CTCTTGTTTT-AAATG-AACTTT-C-----TTCAA-AA---------------------------------------GTTTTTGTAATGATAATACGTATATCCTAATACATAATTCCT---------------------------------CATTTGT----------------------------------------TGCAGAACGTAGAACTTCCAGAA--------------------------------------TCGTTTTCTTTGGA--ACTAAAGAATTTGTTGGA
droSec2 scaffold_43:51716-51965 - dse_1343 TTTAAGT------TTTT------CTCATTTTA-TTTCCCAATATCTATC---------GACATCCCAGA-------------AAAATGATA----------------------------------------------------AAAAATCA-CACTAGCTGAGTAACGGGGATCT----------GATAGTCGTGTAA-CTCAACT-ATAGCA-TTTC--CTCTTGTTTT-AAATT-AACTTT-C-----TTCAA-AA---------------------------------------GTTTTTGTAATGATAATACATATATCCTAATACATAATTCCT---------------------------------CATTTGT----------------------------------------TGCAGAACGTAGAACTTCCAGAA--------------------------------------TCGTTTTCTTTGGA--ACTAAAGAATTTGTTGGA
dm3 chr2R:238674-238869 - TCA-----------------------------------------------------------------------------------------------------------------------------------------------------CACTAGCTGAGTAACGGGTATGTCGATACCCGTTATAGTCGAGTTT-CCCAACT-ATAGTA-TTCT--CTGTTGTTTT-AAATT-AACTTT-A-----TTAAA-AA------------------GTT------------------------GTTCTGATATTACGTAAATCCTAATACAAAATTCCT---------------------------------CATTTGT----------------------------------------TGCAGAACGTAGAACTTCCAGAA--------------------------------------TCGTTTTCTTTGGA--ACTAAAGAATTTGTTGGA
droEre2 scaffold_4770:355017-355274 + TTTTTGT------TTTA------ATTGTTGTT-TTTCCCTATTTCTATC---------GATATGTCAGA-------------AAAATATGA---------------------------AAATTGCTCGATCGCTCTTCTTCTA--------G------CTGATTAAGGGGTATCT----------GATAGTCGGGTAA-CTCGGCT-ATAGTG-TTCT--CTCTTGTTTA-ATATT-GGA----------------AA------------------CTTGTCCCAGAAATGGTA---GGTTTTGCAGTGAAAGTGAGCA------------------------------------------------------------------A--------------------------------------------------------TTTGAACAAA---GACAATTTTTTC-AAACCTTTTCCGTGGTTTTTTTTGGAAGAGCGGAGTACTTGTTGCA
droYak3 3R:425526-425720 + TTTAATT------GTTT------GTCATTTTATTGCCCCAATTTCTATC---------GATATTCCAGC-------------AA-ATGTTT----------------------------------------GCACCTCCACTA--------G------CTGAGTAATAGGTATCT----------GATAGTCGAGCAA-CTCGACT-ATAGCA-ATTC--CTCCTGTTTA--AATT-AGTTTT-G-----TTTAT-TT-------------------------A-------------GTC----------------------------------------------------------------------------------ACAATC---------------------------------------------------------AATTAAAGTT-------TAGTAATAGCTATCTGC-TT--------------------GTTTTTTTCAGA
droEug1 scf7180000409752:785830-786078 - TATCAGT------TACT------CGACAT-GC-TTTCTCCGACAATATG---C-----GGCGCTTGGGTAATTTCCACTAGCAAAATGAAT------------------ATTT---TAAAA---------------TTGTGTA--------A------AACAGTAACGGGTATCT-----------ATTGTCGCGGCA-CTCGACT-ATAGCT-TTCC--ATCTTGTTTT-AAACT-----TTGTTGTGCTT------------------TAAAAAAGATTG---------------------CTAAGGATTTTACA-ATACAATTTTACAAGATTTCT-------------------------------CTCATTTGT----------------------------------------TGGT-----TTGAGTCTTAGAAG--------------------------------------ACACTTTCTTTAAA--GCT---------------
droBia1 scf7180000302411:70048-70276 - TAATT--------TGCT------GCTATATAA-TATCTCCATTTTTATT----------------------------------------------------------------------------------TTTCTCCCTCAA--------G------CTGAGTAACGGGTATCT----------GATAGTCGAGGCA-CTCGACT-ATAGCG-TTCT--TCATTGTTTT-TAAGTTTAATTT-T-----TAAAA-GACTTATGGAATTTTTAATTTAAATGCCAAAAACTACA---TCTATTGTATTAAAAGTTA----------------------C-----AACTTACA------------AA------------T----------------------------------------TTA------------TTCGTGTC--------------------------------------TCGTTCTATTTTG----ATAACAAATTTTTT---
droTak1 scf7180000413573:923-1145 + GCGTGAT------C---------AACGTTTTC-TATCTCTATCTCCATC---------TCCCTC-------------------------------------------------------------------GCACTCCCTTTA--------T------CTGAGTAACGGGTATCT----------GATAGTCGGGGCA-TCCGACT-ATAACG-TTCC--CTCTTGTTTT-TT-TT-ATATTC-T-----TTATG-AG---------------------------------------GTCTTCTGAAATATAA-----------TTGTTCTGTAGTTCC-----AATTTGCTCCATGATTTCCAAGTTCAATGA----ATAG----TCT-----TGT---------------------------------TTGTATTTAG---------------------------------------------------------A--TTATATTTGTCTAT
droEle1 scf7180000491186:1368033-1368192 + ATTG---------------------------------------------------------------------------------------------------------------------------------------------------G------CTGAGTAACGGGTATCT----------AATAGTCGGGAAA-CTCGACT-GAAGCA-TTTT--CTCTTGTTTT-GTATT-AAATTT-G-----TTAGG-CA------------------AATGCTTTA---------AAA----------------------------------------------------------------------------------TAC----TTATCAAACATAAGCAAGTGCTCCTCATCTATCAAAATAACTCTTAATATCTAGAA--------------------------------------TCTATTTC--------------------------
droRho1 scf7180000777520:16192-16466 + TTGAACT------TTTT------GTCCTTTT----TTCCTGTGGTCACTATAATTCACATTATGTTAAA-------------AAAACAAAAAAAAACACAAGAAGGCATATTTATATTAAG---------------TTGTTTA--------G------CTGAGTAACGGGTATCT----------AATAGTCGAGGCA-CTCGACT-ATAGCG-TTC----TCTTGTTTT-CAAT--AGCTTC-C-----TCCTGCTG---------------------------------------GTCTTTTC-------------------------TGTAATTTC--------TGGTAATATGATTATGCATCTCACTGC---------------------------------TTTGT-TTATCCGACAATACGCAGAATATTTACAATA------------------------------------CCAGT-TCCTCAGA--AATAGAGA----------
droFic1 scf7180000453926:409295-409390 + C--------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGTAACGGGTATCT----------GATAGTCGATTCA-CTCGACT-GTAGCG-GTTT--CTCCGTTTTT--TTTT-ATATTT-T-----TTTGG-TG---------------------------------------GGTT-----------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAAAACATATAGCC
droKik1 scf7180000301689:53529-53650 - TTTTCAAGACTATTTTA------ATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATTAAAGTGTATACGTTATTAATGAATTGTTCATTTAAT---------------------------TTGTT----------------------------------------TTTAGAATGTAGAACTTCCAGAA--------------------------------------TCGTTTTCCATGGA--ATTAAGAAATTTGTTGGA
droAna3 scaffold_13230:2653374-2653464 - AATTATA------ATAAAAGTTAACCAATTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-----------TATT---------------------------TTTTT----------------------------------------TACAGAATGTCGAACTTCCAGAA--------------------------------------ACATTTTCTATGGA--ACTTCGAAACTTATTGGA
droBip1 scf7180000395303:6000-6097 + AG------------------------------------------------------------------------------------------------------------------------------------------------------------ATGAGTACCGGGTATAA----------TATAGTCGGGAAA-CTCGACT-ATAGCCGTCCT--TTCTTGTTTTTAAATT-ATCTTA-G----T-------------------------------------------------AT-----------TC--------------------------------------------------------------------ACAA--------------------------------------------------------TACGATCAAA-----------------------------------------------------CGC---ATA
dp5 Unknown_singleton_537:4777-4952 - AAATGGT------A---------------------------------------------------------------------------------------------------------------------------------AAAAA-CA-TATAA--------------------------------ATTGAGCAA-CTTGGAAGACAA----TTTTTCCACTGTTGT-CCATG----T-TATATAGTTT------------------TCAGCATAAGTGTAA---------ATA----------------------------------------------------------------------------------TAA----GCA-----TATAAATATATGTATTGTTTTCTTTGACAGAATGTTGAACTTCCTGAA--------------------------------------TCATTTTCTGTCGA--GCTAAAGAATTTGTTGGA
droPer2 scaffold_43:582692-582867 + AAATGGT------A---------------------------------------------------------------------------------------------------------------------------------AAAAA-CA-TATAA--------------------------------ATTGAGTAA-CTTGGAAGACAA----TTTTTCCACTGTTGT-CCATG----T-TATATAGTTT------------------TCAGCATAAGTGTAA---------ATA----------------------------------------------------------------------------------TAA----GCA-----TATAAATATATGTATTGTTTTCTTTGACAGAATGTTGAACTTCCTGAA--------------------------------------TCATTTTCTGTCGA--GCTAAAGAATTTATTGGA
droWil2 scf2_1100000004513:5117190-5117262 - AATAGCT------AATT------TTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTGATAGAATGTCGAACTCCCGGAT--------------------------------------TCCTTTTCTGCGGA--ATTAAGGAATTTATTGGA
droVir3 scaffold_13324:2042033-2042134 - AATAATA------CTAAACTTTTCTTAATTTA----CTTAATTTTCAA-------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCTTTAACAGAACGTTGAGCTTCCAGAT--------------------------------------TCATTTTCAGTGGA--ATTAAGGAATTTATTGGA
droMoj3 scaffold_2301:924-1045 + G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGATCT----------CGTAGTCGAGCAGTCTCGACT-AGAGCT-TTCT--TACTTGTTTT-GCTTT-GTTTTT-G-----TTTGT-TT---------------------------------------GTTTTTGCAATAATAAAATG--------------------------------------------------------------AAA----TTG-----TATATATATATATATTT--------------------------------------------------------------------------------------------TTTTTTTCTTT
droGri2 scaffold_15245:11907119-11907190 + TAATTAC------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATA---------------------------TTTTC----------------------------------------TACAGAATGTCGAACTTCCAGAC--------------------------------------ACATTTTCCGCTGA--ATTAAGGAATTTACTGGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTTAAGT------TTTT------CTCATTTTA-TTTCCCAATATCTATC---------GACATCCCAGA-------------AAAATGAAA----------------------------------------------------AAAAATCA-CACTAGCTGAGTAACGGGGATCT----------GATAGTCGTGTAA-CTCAACT-ATAGCA-TTTC--CTCTTGTTTT-AAATG-AACTTT-C-----TTCAA-AA---------------------------------------GTTTTTGTAATGATAATACGTATATCCTAATACATAATTCCT---------------------------------CATTTGT----------------------------------------TGCAGAACGTAGAACTTCCAGAA--------------------------------------TCGTTTTCTTTGGA--ACTAAAGAATTTGTTGGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGGA--ACTAAAGAATTTGTTGGA26110.001000010053000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTTGGA--ACTAAAGAATTTGTTGGA2717.00700000033000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGA--ACTAAAGAATTTGTTGGA2412.00200000020000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTTTCTTTGGA--ACTAAAGAATT.......2512.00200100010000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAACTTCCAGAA--------------------------------------TCGT..............................1911.00101000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAACTTCCAGAA--------------------------------------TCGTTT............................2111.00100100000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACGTAGAACTTCCAGAA--------------------------------------T.................................2111.00110000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CGTAGAACTTCCAGAA--------------------------------------TCGTTTTCTT........................2611.00101000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACGTAGAACTTCCAGAA--------------------------------------..................................2011.00110000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTTGGA--ACTAAAGAATTTGTTGG.2611.00100000000010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAAGAATTTGTTGG.1611.00100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGA--ACTAAAGAATTTGTTGGA2511.00100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGA--ACTAAAGAATTTGTT...2111.00100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAGAA--------------------------------------TCGTTTTCTTTGGA--ACT...............2511.00100100000000000000
...............................................................................................................................................AAAAATCA-CACTAGCTGAGTAACGGGGA......................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTAGAACTTCCAGAA--------------------------------------TCGTTT............................2311.00100100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGA--ACTAAAGAATTTGTTG..2311.00100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGTAGAACTTCCAGAA--------------------------------------TCGT..............................2311.00100100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TTGT----------------------------------------TGCAGAACGTAGAACTTCC............................................................................2311.00101000000000000000
.........................................................................................................................................................................................GATAGTCGTGTAA-CTCAACT-...................................................................................................................................................................................................................................................................................................................2020.50100100000000000000
.............................................................................................................................................................GCTGAGTAACGGGGATCT----------G........................................................................................................................................................................................................................................................................................................................................1930.33100000000001000000
droSec2
TTTAAGT------TTTT------CTCATTTTA-TTTCCCAATATCTATC---------GACATCCCAGA-------------AAAATGATA----------------------------------------------------AAAAATCA-CACTAGCTGAGTAACGGGGATCT----------GATAGTCGTGTAA-CTCAACT-ATAGCA-TTTC--CTCTTGTTTT-AAATT-AACTTT-C-----TTCAA-AA---------------------------------------GTTTTTGTAATGATAATACATATATCCTAATACATAATTCCT---------------------------------CATTTGT----------------------------------------TGCAGAACGTAGAACTTCCAGAA--------------------------------------TCGTTTTCTTTGGA--ACTAAAGAATTTGTTGGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................................................................................ACTTT-C-----TTCAA-AA---------------------------------------GTTTTTG..................................................................................................................................................................................................................2011.0011000
........................................ATATCTATC---------GACATCCCAGA-------------AAAATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................2640.2511000
...................................................................................................................................................ATCA-CACTAGCTGAGTAACGGG........................................................................................................................................................................................................................................................................................................................................................2240.2510010
....................................................................................................................................................TCA-CACTAGCTGAGTAACGGG........................................................................................................................................................................................................................................................................................................................................................21200.0510100
.....................................................................................................................................................CA-CACTAGCTGAGTAACGG.........................................................................................................................................................................................................................................................................................................................................................19200.0510010
dm3
TCA-----------------------------------------------------------------------------------------------------------------------------------------------------CACTAGCTGAGTAACGGGTATGTCGATACCCGTTATAGTCGAGTTT-CCCAACT-ATAGTA-TTCT--CTGTTGTTTT-AAATT-AACTTT-A-----TTAAA-AA------------------GTT------------------------GTTCTGATATTACGTAAATCCTAATACAAAATTCCT---------------------------------CATTTGT----------------------------------------TGCAGAACGTAGAACTTCCAGAA--------------------------------------TCGTTTTCTTTGGA--ACTAAAGAATTTGTTGGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTAGAACTTCCAGAA--------------------------------------TCGT..............................21121.00210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004450800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAACGTAGAACTTCCAGA.........................................................................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTAGAACTTCCAGAA--------------------------------------T.................................1915.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGTAGAACTTCCAGAA--------------------------------------TCGT..............................2315.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000230000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTAGAACTTCCAGAA--------------------------------------..................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGGA--ACTAAAGAATTTGTTGGA2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAA--------------------------------------TCGTTTTCTTTGGA--ACTA..............2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
...........................................................................................................................................................TAGCTGAGTAACGGGTATGT...................................................................................................................................................................................................................................................................................................................................................2072.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000030000000000000000410000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTAGAACTTCCAGAA--------------------------------------T.................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTAGAACTTCCAGAA--------------------------------------TCGTT.............................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................TAGCTGAGTAACGGGTATG....................................................................................................................................................................................................................................................................................................................................................1971.1480000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000010000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000101000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAACTTCCAGAA--------------------------------------TCGTTTTCT.........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................T----------------------------------------TGCAGAACGTAGAACTTCCAGAA--------------------------------------TCGT..............................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAA--------------------------------------TCGTTTTCTTTGGA--..................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAA--------------------------------------TCGTTTTCTTTGGA--ACTAAAG...........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................TGAGTAACGGGTATGTCGATACCCG..........................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAA--------------------------------------TCGTTTTCTTTGGA--ACTAAAGAA.........2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................TCCT---------------------------------CATTTGT----------------------------------------TGCAGAACGTAGAACT...............................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGTAGAACTTCCAGAA--------------------------------------TCGTTT............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGAACGTAGAACTTCCAGAA--------------------------------------TCGT..............................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTCCAGAA--------------------------------------TCGT..............................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CGTAGAACTTCCAGAA--------------------------------------TCGTTTTCTTTG......................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAACTTCCAGAA--------------------------------------TCGTTTTCTT........................2411.0010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGA--ACTAAAGAATTTGTTGG.2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...........................................................................................................................................................TAGCTGAGTAACGGGTATGTCGATA..............................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................CTGAGTAACGGGTATGTCGATACCCGT.........................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................T-ATAGTA-TTCT--CTGTTGTTTT-AAAT.......................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGAA--------------------------------------TCGTTTTCTTTGGA--AC................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCCAGAA--------------------------------------TCGTTTTCTTTGGA--ACTAAA............3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCTTTGGA--ACTAAAGAATT.......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................TGAGTAACGGGTATGTCGATAC.............................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CGTAGAACTTCCAGAA--------------------------------------TCGT..............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................TACCCGTTATAGTCGAGTTT-CCC........................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGAACGTAGAACTTCCAGAA--------------------------------------TCGTT.............................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGAA--------------------------------------TCGTTTTCTTTGGA--ACTAAA............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................ATTCCT---------------------------------CATTTGT----------------------------------------TGCAGAACGTAGA..................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................TATTACGTAAATCCTAATACAAAAT...................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................TGAGTAACGGGTATGTCGATACCCGT.........................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................TAGCTGAGTAACGGGTATGTCGATACC............................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TCA-----------------------------------------------------------------------------------------------------------------------------------------------------CACTAGCTGAGTAACGGGTA......................................................................................................................................................................................................................................................................................................................................................23200.3570000000000000000000000000000000000000000100000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000
.CA-----------------------------------------------------------------------------------------------------------------------------------------------------CACTAGCTGAGTAACGGGT.......................................................................................................................................................................................................................................................................................................................................................21200.3060000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001000010000000000000000000000000000000
TCA-----------------------------------------------------------------------------------------------------------------------------------------------------CACTAGCTGAGTAACGGG........................................................................................................................................................................................................................................................................................................................................................21200.3060000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CA-----------------------------------------------------------------------------------------------------------------------------------------------------CACTAGCTGAGTAACGGG........................................................................................................................................................................................................................................................................................................................................................20200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000001000000000000000003000000000000000000000000
TCA-----------------------------------------------------------------------------------------------------------------------------------------------------CACTAGCTGAGTAACGGGT.......................................................................................................................................................................................................................................................................................................................................................22200.1530000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..A-----------------------------------------------------------------------------------------------------------------------------------------------------CACTAGCTGAGTAACGGGTA......................................................................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
.CA-----------------------------------------------------------------------------------------------------------------------------------------------------CACTAGCTGAGTAACGG.........................................................................................................................................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
.CA-----------------------------------------------------------------------------------------------------------------------------------------------------CACTAGCTGAGTAACGGGTAT.....................................................................................................................................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000
.CA-----------------------------------------------------------------------------------------------------------------------------------------------------CACTAGCTGAGTAACG..........................................................................................................................................................................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................CACTAGCTGAGTAACGGGTAT.....................................................................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................TAGCTGAGTAACGGGTATGC...................................................................................................................................................................................................................................................................................................................................................20140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................CACTAGCTGAGTAACGGGTA......................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
TCA-----------------------------------------------------------------------------------------------------------------------------------------------------CACTAGCTGAGTAACGG.........................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..A-----------------------------------------------------------------------------------------------------------------------------------------------------CACTAGCTGAGTAACGGG........................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..A-----------------------------------------------------------------------------------------------------------------------------------------------------CACTAGCTGAGTAACGGGT.......................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..A-----------------------------------------------------------------------------------------------------------------------------------------------------CACTAGCTGAGTAACGG.........................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CA-----------------------------------------------------------------------------------------------------------------------------------------------------CACTAGCTGAGTAACGGGTA......................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TTTTTGT------TTTA------ATTGTTGTT-TTTCCCTATTTCTATC---------GATATGTCAGA-------------AAAATATGA---------------------------AAATTGCTCGATCGCTCTTCTTCTA--------G------CTGATTAAGGGGTATCT----------GATAGTCGGGTAA-CTCGGCT-ATAGTG-TTCT--CTCTTGTTTA-ATATT-GGA----------------AA------------------CTTGTCCCAGAAATGGTA---GGTTTTGCAGTGAAAGTGAGCA------------------------------------------------------------------A--------------------------------------------------------TTTGAACAAA---GACAATTTTTTC-AAACCTTTTCCGTGGTTTTTTTTGGAAGAGCGGAGTACTTGTTGCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
TTTAATT------GTTT------GTCATTTTATTGCCCCAATTTCTATC---------GATATTCCAGC-------------AA-ATGTTT----------------------------------------GCACCTCCACTA--------G------CTGAGTAATAGGTATCT----------GATAGTCGAGCAA-CTCGACT-ATAGCA-ATTC--CTCCTGTTTA--AATT-AGTTTT-G-----TTTAT-TT-------------------------A-------------GTC----------------------------------------------------------------------------------ACAATC---------------------------------------------------------AATTAAAGTT-------TAGTAATAGCTATCTGC-TT--------------------GTTTTTTTCAGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
TTTAATT------GTTT------GTCATTTTATTGCCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000
droEug1
TATCAGT------TACT------CGACAT-GC-TTTCTCCGACAATATG---C-----GGCGCTTGGGTAATTTCCACTAGCAAAATGAAT------------------ATTT---TAAAA---------------TTGTGTA--------A------AACAGTAACGGGTATCT-----------ATTGTCGCGGCA-CTCGACT-ATAGCT-TTCC--ATCTTGTTTT-AAACT-----TTGTTGTGCTT------------------TAAAAAAGATTG---------------------CTAAGGATTTTACA-ATACAATTTTACAAGATTTCT-------------------------------CTCATTTGT----------------------------------------TGGT-----TTGAGTCTTAGAAG--------------------------------------ACACTTTCTTTAAA--GCT---------------SizeHit CountTotal NormTotal
No Reads
droBia1
TAATT--------TGCT------GCTATATAA-TATCTCCATTTTTATT----------------------------------------------------------------------------------TTTCTCCCTCAA--------G------CTGAGTAACGGGTATCT----------GATAGTCGAGGCA-CTCGACT-ATAGCG-TTCT--TCATTGTTTT-TAAGTTTAATTT-T-----TAAAA-GACTTATGGAATTTTTAATTTAAATGCCAAAAACTACA---TCTATTGTATTAAAAGTTA----------------------C-----AACTTACA------------AA------------T----------------------------------------TTA------------TTCGTGTC--------------------------------------TCGTTCTATTTTG----ATAACAAATTTTTT---SizeHit CountTotal NormTotal
No Reads
droTak1
GCGTGAT------C---------AACGTTTTC-TATCTCTATCTCCATC---------TCCCTC-------------------------------------------------------------------GCACTCCCTTTA--------T------CTGAGTAACGGGTATCT----------GATAGTCGGGGCA-TCCGACT-ATAACG-TTCC--CTCTTGTTTT-TT-TT-ATATTC-T-----TTATG-AG---------------------------------------GTCTTCTGAAATATAA-----------TTGTTCTGTAGTTCC-----AATTTGCTCCATGATTTCCAAGTTCAATGA----ATAG----TCT-----TGT---------------------------------TTGTATTTAG---------------------------------------------------------A--TTATATTTGTCTATSizeHit CountTotal NormTotal
No Reads
droEle1
ATTG---------------------------------------------------------------------------------------------------------------------------------------------------G------CTGAGTAACGGGTATCT----------AATAGTCGGGAAA-CTCGACT-GAAGCA-TTTT--CTCTTGTTTT-GTATT-AAATTT-G-----TTAGG-CA------------------AATGCTTTA---------AAA----------------------------------------------------------------------------------TAC----TTATCAAACATAAGCAAGTGCTCCTCATCTATCAAAATAACTCTTAATATCTAGAA--------------------------------------TCTATTTC--------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TTGAACT------TTTT------GTCCTTTT----TTCCTGTGGTCACTATAATTCACATTATGTTAAA-------------AAAACAAAAAAAAACACAAGAAGGCATATTTATATTAAG---------------TTGTTTA--------G------CTGAGTAACGGGTATCT----------AATAGTCGAGGCA-CTCGACT-ATAGCG-TTC----TCTTGTTTT-CAAT--AGCTTC-C-----TCCTGCTG---------------------------------------GTCTTTTC-------------------------TGTAATTTC--------TGGTAATATGATTATGCATCTCACTGC---------------------------------TTTGT-TTATCCGACAATACGCAGAATATTTACAATA------------------------------------CCAGT-TCCTCAGA--AATAGAGA----------SizeHit CountTotal NormTotal
No Reads
droFic1
C--------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGTAACGGGTATCT----------GATAGTCGATTCA-CTCGACT-GTAGCG-GTTT--CTCCGTTTTT--TTTT-ATATTT-T-----TTTGG-TG---------------------------------------GGTT-----------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAAAACATATAGCCSizeHit CountTotal NormTotal
No Reads
droKik1
TTTTCAAGACTATTTTA------ATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATTAAAGTGTATACGTTATTAATGAATTGTTCATTTAAT---------------------------TTGTT----------------------------------------TTTAGAATGTAGAACTTCCAGAA--------------------------------------TCGTTTTCCATGGA--ATTAAGAAATTTGTTGGASizeHit CountTotal NormTotal
No Reads
droAna3
AATTATA------ATAAAAGTTAACCAATTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT-----------TATT---------------------------TTTTT----------------------------------------TACAGAATGTCGAACTTCCAGAA--------------------------------------ACATTTTCTATGGA--ACTTCGAAACTTATTGGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AG------------------------------------------------------------------------------------------------------------------------------------------------------------ATGAGTACCGGGTATAA----------TATAGTCGGGAAA-CTCGACT-ATAGCCGTCCT--TTCTTGTTTTTAAATT-ATCTTA-G----T-------------------------------------------------AT-----------TC--------------------------------------------------------------------ACAA--------------------------------------------------------TACGATCAAA-----------------------------------------------------CGC---ATASizeHit CountTotal NormTotal
No Reads
dp5
AAATGGT------A---------------------------------------------------------------------------------------------------------------------------------AAAAA-CA-TATAA--------------------------------ATTGAGCAA-CTTGGAAGACAA----TTTTTCCACTGTTGT-CCATG----T-TATATAGTTT------------------TCAGCATAAGTGTAA---------ATA----------------------------------------------------------------------------------TAA----GCA-----TATAAATATATGTATTGTTTTCTTTGACAGAATGTTGAACTTCCTGAA--------------------------------------TCATTTTCTGTCGA--GCTAAAGAATTTGTTGGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTGAACTTCCTGAA--------------------------------------T.................................1911.0010001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA--GCTAAAGAATTTGTTGGA2011.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTGAACTTCCTGAA--------------------------------------TCATTTTCT.........................2711.0010001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTGTCGA--GCTAAAGA..........1811.0010000000001
droPer2
AAATGGT------A---------------------------------------------------------------------------------------------------------------------------------AAAAA-CA-TATAA--------------------------------ATTGAGTAA-CTTGGAAGACAA----TTTTTCCACTGTTGT-CCATG----T-TATATAGTTT------------------TCAGCATAAGTGTAA---------ATA----------------------------------------------------------------------------------TAA----GCA-----TATAAATATATGTATTGTTTTCTTTGACAGAATGTTGAACTTCCTGAA--------------------------------------TCATTTTCTGTCGA--GCTAAAGAATTTATTGGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAA--------------------------------------TCATTTTCTGTCGA--GCT...............2220.501100000
droWil2
AATAGCT------AATT------TTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTGATAGAATGTCGAACTCCCGGAT--------------------------------------TCCTTTTCTGCGGA--ATTAAGGAATTTATTGGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTGCGGA--ATTAAGGAAT........2011.00100010
droVir3
AATAATA------CTAAACTTTTCTTAATTTA----CTTAATTTTCAA-------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCTTTAACAGAACGTTGAGCTTCCAGAT--------------------------------------TCATTTTCAGTGGA--ATTAAGGAATTTATTGGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGATCT----------CGTAGTCGAGCAGTCTCGACT-AGAGCT-TTCT--TACTTGTTTT-GCTTT-GTTTTT-G-----TTTGT-TT---------------------------------------GTTTTTGCAATAATAAAATG--------------------------------------------------------------AAA----TTG-----TATATATATATATATTT--------------------------------------------------------------------------------------------TTTTTTTCTTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................ACT-AGAGCT-TTCT--TACTTGTT..............................................................................................................................................................................................................................................................................................21200.102000002
.............................................................................................................................................................................................GTCGAGCAGTCTCGACT-AGAGCT-T...........................................................................................................................................................................................................................................................................................................24200.102000020
..........................................................................................................................................................................................................................................TT-GTTTTT-G-----TTTGT-TT---------------------------------------GTTTTC...................................................................................................................................................................................................................22200.102200000
...................................................................................................................................................................................................................................TTT-GCTTT-GTTTTT-G-----TTTGT-TT---------------------------------------GTTTTC...................................................................................................................................................................................................................28200.102200000
.....................................................................................................................................................................................................................................T-GCTTT-GTTTTT-G-----TTTGT-TT---------------------------------------GTTTC....................................................................................................................................................................................................................25200.051010000
...................................................................................................................................................................................................................................TTT-GCTTT-GTTTTT-G-----TTTG....................................................................................................................................................................................................................................................................19200.051100000
...........................................................................................................................................................................................................................................T-GTTTTT-G-----TTTGT-TT---------------------------------------GTTTT....................................................................................................................................................................................................................20200.051100000
......................................................................................................................................................................................................TCTCGACT-AGAGCT-TTCT--TACTTGTTT.............................................................................................................................................................................................................................................................................................27200.051000001
..................................................................................................................................................................................................................................TTTT-GCTTT-GTTTTT-G-----TTTGT-TT---------------------------------------G........................................................................................................................................................................................................................24200.051100000
..............................................................................................................................................................................................TCGAGCAGTCTCGACT-AGAGCT-TT..........................................................................................................................................................................................................................................................................................................24200.051010000
droGri2
TAATTAC------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATA---------------------------TTTTC----------------------------------------TACAGAATGTCGAACTTCCAGAC--------------------------------------ACATTTTCCGCTGA--ATTAAGGAATTTACTGGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 12:00 PM