ID:

dsi_15403

 Coordinate:

3l:15615887-15616164 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-29.8 -29.6 -29.6

Flybase annnotation

five_prime_UTR [3l_15615793_15615886_-]; exon [3l_15615711_15615886_-]; exon [3l_15616165_15616549_-]; five_prime_UTR [3l_15616165_15616549_-]; intron [3l_15615887_15616164_-]

No Repeatable elements found

mature
star
  1. 2l:6561368-6561385 +
  2. 2r:3502480-3502497 +
  3. 2r:7224325-7224342 +
  4. 2r:7686430-7686447 +
  5. 2r:12708006-12708023 +
  6. 2r:14460030-14460047 +
  7. 2r:20587013-20587030 +
  8. 2r:20671927-20671944 +
  9. 3l:780985-781002 -
  10. 3l:5720411-5720428 +
  11. 3l:8948785-8948802 +
  12. 3l:12486343-12486360 -
  13. dsi_15403  3l:15616034-15616051 -
  14. 3l:16720629-16720646 +
  15. x:4056090-4056107 +
  16. x:4785366-4785383 +
  17. x:5712825-5712842 +
  18. x:5933119-5933136 +
  19. x:9719865-9719882 +
  20. x:13472511-13472528 +

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCGAGAGGCGAAAGTGCAACAGAGCGAAAGAGAGAGCGATAAATAGCGAGGTGAATATCAAAGGGAAAACCCATTTGCATCGAGAAATAAAACGAAGCGAACGGACGGCCAAAGCGTAATTGTAAAATTCCACTGTCTGGGGCAGGCTATCAATTGGTGCATGTGTGTGTGTGTGTGAGCTATATATACGTGGTAGATGTATATATGTACGGCATATATACTGCACGACACTTACCATATATGCGAAGAAAACATGGAATCATCTCGCGATAATTGCCATATCCAATGTATCTCTATCTATCTCTCATGTGTGTGCAACATTTTGCAGCTATCCTATCCGAAACCGATCTGAATCAGTATCTGAACCCGAATCCGATT
*******************************************************************************************************************************************************************((((((((((.(((((.(((((((((((.....)))))))))))..(((((.......))).))...)))))))))))))))........(((((((.(((....))).))).))))............************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 M053
female body
 O002
Head
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
.........................................................................................................................................................................................................................................................................................................................................................GATCTGAATCAGTATCTGAACCC.......... 23 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................ACCGATCTGAATCAGTATCTGAACCCG......... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................CTGAATCAGTATCTGAACCCGAATC..... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................AACAGAGCGAAAGAGAGAGCG.................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................ATCTGAATCAGTATCTGAACC........... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................AACCGATCTGAATCAGTATCTGAATCC.......... 27 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.............GTGCAACAGAGCGAAAGAGA......................................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................ACCGATCTGAATCAGTATCTGAACC........... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................CAGTATCTGAACCCGAATCC.... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................AAGCGAAGCGAACGGACGGC............................................................................................................................................................................................................................................................................. 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................ATTGCCATATCCAATGTATC...................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................CTATCCGAAACCGATCTGAATC....................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................TCTGAATCAGTATCTGAACC........... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................ACCGATCTGAATCAGTATCTGAACCC.......... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................CTGAATCAGTATCTGAACCC.......... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................ATCCGAAACCGATCTGAATCAGT.................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................CAGTATCTGAACCCGAATC..... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................CTGAATCAGTACCTGAACCCGAATC..... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................ATCAGTATCTGAACCCGAATCCGAC. 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................TGAATCAGTAGCTGAAGCCGAAA...... 23 3 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................GAAAACGAAGAGAACGGAC................................................................................................................................................................................................................................................................................ 19 2 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................................................ATCGAACCATCTCGCGA............................................................................................................ 17 2 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0
....................................................................................................................................................................................TATATGTACGCGGTAGA..................................................................................................................................................................................... 17 2 8 0.13 1 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................TGTGTGTGTGTGTGAGCT..................................................................................................................................................................................................... 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................................................TATGCGAAGCGAACCTGGA........................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

AGCTCTCCGCTTTCACGTTGTCTCGCTTTCTCTCTCGCTATTTATCGCTCCACTTATAGTTTCCCTTTTGGGTAAACGTAGCTCTTTATTTTGCTTCGCTTGCCTGCCGGTTTCGCATTAACATTTTAAGGTGACAGACCCCGTCCGATAGTTAACCACGTACACACACACACACACTCGATATATATGCACCATCTACATATATACATGCCGTATATATGACGTGCTGTGAATGGTATATACGCTTCTTTTGTACCTTAGTAGAGCGCTATTAACGGTATAGGTTACATAGAGATAGATAGAGAGTACACACACGTTGTAAAACGTCGATAGGATAGGCTTTGGCTAGACTTAGTCATAGACTTGGGCTTAGGCTAA
**************************************************************************************((((((((((.(((((.(((((((((((.....)))))))))))..(((((.......))).))...)))))))))))))))........(((((((.(((....))).))).))))............******************************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 M023
head
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 M025
embryo
 O002
Head
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
......................TCGCTGACTCTCTCGGTATTT............................................................................................................................................................................................................................................................................................................................................... 21 3 12 7.25 87 63 0 0 3 6 0 0 1 10 2 1 1
...............................................................................................................................................................................................................................................................................................................................................................TTAGTCATAGACTTGGGCTTA...... 21 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................................TAGACTTGGGCTGAGG.... 16 1 9 2.11 19 0 0 16 0 0 0 0 3 0 0 0 0
.....................................................................................................................................................................................................................................................................................GTATAGGTTACATAGAGATAG................................................................................ 21 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................GTATAGGTTACATAGAGATAGATA............................................................................. 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................GCTTCTTTTGTACCTTAGTAG.................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................GGTATATACGCTTCTTTTGTA........................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.....TCCGCTTTCACGTTGTCTCGC................................................................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................AAATGCCGTGCTGTGTATGGTAT........................................................................................................................................... 23 3 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................................TCATAGACTTGGGCTTAGGCT.. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................TATACGCTTCTTTTGTACCT........................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................CCTAGACTTGGGCTGAGG.... 18 2 9 0.67 6 0 0 6 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................ACGGTAAAGGTTACATAG...................................................................................... 18 1 3 0.67 2 0 0 2 0 0 0 0 0 0 0 0 0
......................TCGCTTACTCTCTCGGTATT................................................................................................................................................................................................................................................................................................................................................ 20 2 4 0.50 2 0 0 0 0 2 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................................TAGACTTGGGCTGAGGGAAA 20 3 9 0.33 3 0 0 1 0 0 0 0 2 0 0 0 0
.....................CTCGCTGACTCTCTCGGTATT................................................................................................................................................................................................................................................................................................................................................ 21 3 10 0.30 3 2 0 0 0 0 1 0 0 0 0 0 0
.....................CTCGCTGACTCTCTCGGTATTT............................................................................................................................................................................................................................................................................................................................................... 22 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................GCCGGTTTTGCATTAA................................................................................................................................................................................................................................................................. 16 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................AAAACGTTGATAGGAT.......................................... 16 1 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................ATGCTGTGATTGGTATACAC....................................................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................................TAGACTTGGGCTGAG..... 15 1 17 0.12 2 0 0 1 0 0 0 0 1 0 0 0 0
......................TCGCTTACTCTCTCGGTAT................................................................................................................................................................................................................................................................................................................................................. 19 2 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................ATGCTGTGAGTGGTAT........................................................................................................................................... 16 2 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0 0
...............................................................................................................................................................................................................................................................................TTTACGGGATAGGTTACAGA....................................................................................... 20 3 11 0.09 1 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................ATGCTGTGAGTGGTATAC......................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................TGGCTAGGTTTAGTCAGAG................. 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................GCCGGTCTCGCATCAACAG.............................................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................................ATGCTGTGATTGGTATACA........................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................ACGTGCTGTCAAAGGAATA.......................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0

Generated: 04/23/2015 at 04:24 PM