ID:

dsi_15398

Coordinate:

3l:16496415-16496564 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-3.2	-2.8	-2.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GAGGTCCAGATCAGCGAGGTCGAGGTGGACGCCACCATCGAGGAAAGAGGGTAGGTGACCTGTGTCATGTGTGTCCCAGCACAGTTTTGTGGCAGTTCGTAACGAAAGTCTTCTTCTGTAATCATATCTCAATTCTCTTGTGCTCTTTGTCCGATCATACCAAATACTTTGTTGTACAAAAAAAGAAAAACATTTGCACATTCCAATCGAAAAGATTCCAAAATCAATATATGTATACAAACCAATGAAA **************************************************************************************************************.........................((((((..............................)))))).....****************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	M025 embryo	M053 female body
.........................................................................................................................................................................TGTTGTACAAAAAAA..................................................................	15	0	1	1.00	1	0	1	0	0	0
...GTCCAGATCAGCGAGGGCGAGGTG...............................................................................................................................................................................................................................	24	1	1	1.00	1	0	0	0	1	0
................................................................................................................CTTCTGTAATCATATCTCAATTCTCTT...............................................................................................................	27	0	1	1.00	1	0	0	0	0	1
....................................................................................................................................................GTGCGATCATACCAA.......................................................................................	15	1	10	0.90	9	5	0	4	0	0
.......AGATCAGTCTGGTCGAGGTGGA.............................................................................................................................................................................................................................	22	3	2	0.50	1	1	0	0	0	0
...................................................................................................................................................TGTGCGATCATACCAA.......................................................................................	16	1	3	0.33	1	0	0	1	0	0
..................................................................................................................................................GTGTGCGATCATACCAA.......................................................................................	17	2	14	0.29	4	2	0	2	0	0
.............................................................................................AGTTCCTAACGAAAG..............................................................................................................................................	15	1	15	0.07	1	0	0	1	0	0
..................................................................ATGTCGGTCCCAGCAC........................................................................................................................................................................	16	2	16	0.06	1	0	0	1	0	0
....................................................................................................................................................................TACTTCGTTGTAAAAAAA....................................................................	18	2	20	0.05	1	0	1	0	0	0

Anti-sense strand reads

CTCCAGGTCTAGTCGCTCCAGCTCCACCTGCGGTGGTAGCTCCTTTCTCCCATCCACTGGACACAGTACACACAGGGTCGTGTCAAAACACCGTCAAGCATTGCTTTCAGAAGAAGACATTAGTATAGAGTTAAGAGAACACGAGAAACAGGCTAGTATGGTTTATGAAACAACATGTTTTTTTCTTTTTGTAAACGTGTAAGGTTAGCTTTTCTAAGGTTTTAGTTATATACATATGTTTGGTTACTTT ****************************************************************.........................((((((..............................)))))).....**************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs	SRR902008 ovaries	M024 male body	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs
...............................................................................................................................................................................................................................AGGTATGTACATATGTTTGGT......	21	2	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................AAGATGGTTTATGAAACAACAGGT........................................................................	24	3	1	1.00	1	0	0	1	0	0	0
........................................................................................................................................................................................................................AGGATTTAGTTATATACAAATC............	22	3	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................GAGGTATGTACATATGTTTGGT......	22	3	2	0.50	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................GAGGTATATACATATGTTTCGT......	22	3	2	0.50	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................GAGTTATATACATATGGATGGT......	22	3	2	0.50	1	1	0	0	0	0	0
....AGGGCTAGTCCCTCCAGCGC..................................................................................................................................................................................................................................	20	3	4	0.25	1	0	0	0	0	1	0
............................................................................................CTCAAGCATGGCTTTCAG............................................................................................................................................	18	2	5	0.20	1	0	0	0	1	0	0
..............................................................................................................................AGAGTTAAGAGAAAGCGAG.........................................................................................................	19	2	6	0.17	1	0	1	0	0	0	0
..........................................................................................TCCTCAAGCATGGCTTTCAG............................................................................................................................................	20	3	7	0.14	1	0	0	0	1	0	0
...................................................................................................................................................AGAGGCTAGTAGGGTCTAT....................................................................................	19	3	18	0.11	2	0	0	0	0	0	2
................................................................................................................................................................................................................................TTTGTATACATATGTTTGGT......	20	2	10	0.10	1	1	0	0	0	0	0
....................................................................................................................................AATAGAACACGAGAAA......................................................................................................	16	1	12	0.08	1	0	0	0	0	1	0
.........................ACCTGCGGGGGTAGCTA................................................................................................................................................................................................................	17	2	13	0.08	1	0	1	0	0	0	0

Generated: 04/24/2015 at 05:02 AM