ID:

dsi_15396

 Coordinate:

2r:18156677-18156826 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.6 -16.3 -16.3

Flybase annnotation

five_prime_UTR [2r_18156473_18156676_+]; exon [2r_18156473_18156676_+]; intron [2r_18156677_18157818_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGCAGTCGACGCTGACTCGTTCAGTTTTTTTGGAACCACAAGCGACAAAGGTTGGTGAACGGACGGCAGCAAACGAGATAAAAACTTTAAAAACATCAATTTTGTGACATATAACACATGTATAAGTGATAAACCAACAGCTTGTTCAAATAAACGGCTAGTTTCCAAGTAACTCCAAAAAGAGCGAGCACGAGGAAGAGTTCAAAGAGCGCTGTGATAAAACACGTTAAATAACCAGCATTAATTGCCT
********************************************************.......((........)).........................(((((.((.((((.......)))).)).)))))((....((((((((........((..((((.......)))))).....))))))))....))....*************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M023
head
 M025
embryo
 GSM343915
embryo
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 O002
Head
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
.........................................GCGACAAAGGTTGGTGAAC.............................................................................................................................................................................................. 19 0 1 6.00 6 0 0 4 2 0 0 0 0 0 0 0
.............................................CAAAGGTTGGTGAACGGACGG........................................................................................................................................................................................ 21 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0
........................................AGCGACAAAGGTTGGTGAAC.............................................................................................................................................................................................. 20 0 1 3.00 3 0 1 0 2 0 0 0 0 0 0 0
.......................................AAGCGACAAAGGTTGGTG................................................................................................................................................................................................. 18 0 1 3.00 3 0 2 1 0 0 0 0 0 0 0 0
.........................................GCGACAAAGGTTGGTGAACGGACGG........................................................................................................................................................................................ 25 0 1 3.00 3 2 0 0 0 1 0 0 0 0 0 0
................................................AGGTTGGTGAACGGACGG........................................................................................................................................................................................ 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...............................................AAGGTTGGTGAACGGACGGCAGCA................................................................................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
........................................................GAACGGACGGCAGCAAAC................................................................................................................................................................................ 18 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0
.......................................................TGAACGGACGGCAGCAAACGA.............................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
................................................AGGTTGGTGAACGGACGGCAGCAAAC................................................................................................................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................................GCGACAAAGGTTGGTGAACGGACGGC....................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................CGGACGGCAGCAAACGAGATAAAAA...................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................GCGACAAAGGTTGGTGAACGGACGGCA...................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................AGGTTGGTGAACGGACGGCAGCAA.................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
................................................AGGTTGGTGAACGGACGGCAG..................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................GCGACAAAGGTTGGTGAACGGAC.......................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................GGTTGGTGAACGGACGGC....................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.................................................GGTTGGTGAACGGACGGCAGCAAAC................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................GTGAACGGACGGCAGCAGACGAGA............................................................................................................................................................................ 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................TTTTTTGGAACCACAAGCGACAAAGC....................................................................................................................................................................................................... 26 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
........................................................GAACGGACGGCAGCAAACGA.............................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................TCAAAGAGCGCTGTGATAAAAA........................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1
..........................................CGACAAAGGTTGGTGAACGGACGGCAG..................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................CAAAGGTTGGTGAACGGAC.......................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.........................................GCGACCAAGGTTGGTGAACGGACGGC....................................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................TTGGTGAACGGACGGCA...................................................................................................................................................................................... 17 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
........................TTTTTTTGGAACCACAAGCG.............................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................GGTTGGTGAACGGACGGCAGCAA.................................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..............................TGGAACCACAAGCGACAAAGCTCGA................................................................................................................................................................................................... 25 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.......................................................TGAACGGACGGCAGCAAACGAGATA.......................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..............................................AAAGGTTGGTGAACGGACGG........................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................CGACAAAGGTTGGTGAACGG............................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................CGACAAAGGTTGGTGAAC.............................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
..........................................CGACAAAGGTTGGTGAACGGACG......................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................GCGACAAAGGTTGGTGAACGGA........................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
..............................................AAAGGTTGGTGAACGGACGGA....................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
......................................................GTGAACGGACGGCAGCAAACGAGAT........................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
......................................................GTGAACGGACGGCAGCAAACGAGA............................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
.........................................................AACGGACGGCAGCAAACGA.............................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................AAGCGACAAAGGTTGGTGAACGGAC.......................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................CACAAGCGACAAAGGTTG.................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................ACGGACGGCAGCAAACGAGATA.......................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................CGGACGGCAGCAAACGAGATA.......................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.................................................GGTTGGTGAACGGACGGCAGCAAAA................................................................................................................................................................................ 25 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................AGCGAGCACGAGGAAGA................................................... 17 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..........................................CGACAAAGGTTGGTGAACG............................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
..............................................AAAGGTTGGTGAACGGAC.......................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
............................................ACAAAGGTTGGTGAACGGAC.......................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..................................ACCACAAGCGACAAAGGTT..................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.................................................GGTTGTTGAACGGACGGCAGCA................................................................................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................ACGGACGGCAGCAAACGAGA............................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................AGGTTGGTGAACGGACGGCA...................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.....................................................GGTGAACGGACGGCAGCA................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...........................................GACAAAGGTTGGTGAACG............................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..........................................CGACAAAGGTTGGTGAACGGACGGC....................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
....................................................TGGTGAACGGACGGCAGCAAACGAGA............................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
.............................................CAAAGGTTGGTGAACGGACGGAAT..................................................................................................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................GGACGGCAGCAAACGAGA............................................................................................................................................................................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................AAGGTTGGTGAACGGACGGCAGCAAACG............................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................CGACAAAGGTTGGTGAACGGACGG........................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................TTGGTGAACGCACGGCAGCAA.................................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................ATCAAGCACGTGGAAGAGTT................................................ 20 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0
...............CTCGATCAGTTTTTTT........................................................................................................................................................................................................................... 16 1 9 0.11 1 0 0 0 0 0 0 0 0 0 0 1
.......................................AACCGACACAGGTAGGTGA................................................................................................................................................................................................ 19 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 1
..............ACTCGTTGAGTTTTTT............................................................................................................................................................................................................................ 16 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
.............................................CAAAGGCTGGTGACCCGA........................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

CCGTCAGCTGCGACTGAGCAAGTCAAAAAAACCTTGGTGTTCGCTGTTTCCAACCACTTGCCTGCCGTCGTTTGCTCTATTTTTGAAATTTTTGTAGTTAAAACACTGTATATTGTGTACATATTCACTATTTGGTTGTCGAACAAGTTTATTTGCCGATCAAAGGTTCATTGAGGTTTTTCTCGCTCGTGCTCCTTCTCAAGTTTCTCGCGACACTATTTTGTGCAATTTATTGGTCGTAATTAACGGA
***************************************************.......((........)).........................(((((.((.((((.......)))).)).)))))((....((((((((........((..((((.......)))))).....))))))))....))....******************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
......................................................................................................................................................................................................TCAAGTTTCTCGCGACACTAT............................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0
.............................................................................................................................................................................AGGTTCTTCTCGCTCGTGCT......................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0
...................AAGTCAAAAAAACCTTGGTGT.................................................................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0
............ACTGAGCAAGTCAAAAAAACC......................................................................................................................................................................................................................... 21 0 1 2.00 2 0 0 2 0 0 0 0 0
..............................ACCTTGGTGTTCGCTGTTTCG....................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0
.............................................................................................................................................................................AGGTTCTTCTCGCTCGTGCTC........................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................CTTCAGAAGTTTCTAGCGACACT................................. 23 3 1 1.00 1 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................TCTCAAGTTTCTCGCGACACT................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0
............................................................CCTGCCGTCGTTTGCTCTATT......................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0
...................................................................TCGTTTGCTCTATTTTTGAAA.................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0
...........................AAAACCTTGGTGTTCGCTGTT.......................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0
......................TTAAAAAAACCTTGATGTTCGT.............................................................................................................................................................................................................. 22 3 4 0.25 1 0 0 0 1 0 0 0 0
..................................................................................................................................TATGGTGGTCGAACAAGT...................................................................................................... 18 2 4 0.25 1 0 0 0 1 0 0 0 0
....................................................................................................................................CAGTTGTAGAACAAGTTTATT................................................................................................. 21 3 9 0.11 1 1 0 0 0 0 0 0 0
...........................................................................TCTATTTTTGAAAGTTT.............................................................................................................................................................. 17 1 10 0.10 1 0 0 0 1 0 0 0 0
....................................................................................................AAAAACGGTATATTGTGT.................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 1
.............................................................................................................................CCCTATTTGGTTGTCTAAG.......................................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................CTTTTCAGGTTTCTCGC....................................... 17 2 20 0.05 1 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:18156627-18156876 + dsi_15396 GGCAGT-CGACGCTGACTCGTTCAGTTTTTTTGGAACCAC-AAGCGACAAAGGTTGGTGAA-C--------GGAC---------GG----CAGC--AAACGA-------GA------TAAAAACTT---TA-AAAACAT--CAATTT-TGTGACAT-ATAACA--CATGTAT-AAGTGATAAACCAACAGCTTGTTCAAATAAA-CGGCTAGTTTCCAAGTAACTCCAAA-A---------------------------------AGAGCGAGC------A--CGAGGA--AGAGTTCAAAG----A--GCGCT-G---------TGA-----T----------AAAACAC--GTTAAATAACCAGC--------ATTAATTGCCT
droSec2 scaffold_9:927665-927914 + GGCAGT-CGACGCTGACTCGTTCAGTTTTTTTGGAACCAC-AAGCGACAAAGGTTGGTGAA-C--------GGAC---------GG----CAGC--AAACAA-------GA------TAAAAACTT---TA-AAAACAT--CAATTT-TGTGACAT-ATAACA--CATGTAT-AAGTGATAAACCAACAGCTTGTTCAAATAAA-CGGCTAGTTTCCAAGTAACTCCAAG-A---------------------------------AGAGCGAGC------A--CGAGGA--AAAGTTCAAAG----A--GCGCT-G---------TGA-----T----------AAAACAC--GTTAAATAAGCAAC--------ATTAATTGCTT
dm3 chr2R:17601622-17601871 + GGCAGT-CGACGCTGACTCGTTCAGTTTTTTTTGAAGCAC-AAGCGACAAAGGTTGGTGAA-C--------GGAC---------GG----CAGC--AAATAA-------GA------TAAAAACTT---TA-AAAACAT--CAATTT-TGTGACAT-ATAACG--CATGCAT-TAGTGATAAACCAACAACTTGTTCAAATAAA-CGGCTAGTTTGCAACTTACTCCAAC-A---------------------------------AGAGCGAGC------G--AGAGGA--AGAGTTCAAAG----A--GCGCT-G---------TGA-----T----------AAAACAC--GTTAAAAAACCAAC--------ATTAATTGCTT
droEre2 scaffold_4845:11750746-11750997 + GGCAGT-CGACGCTGACTCGTTCAGTTTTTTTCGAAGAAC-AAGCGACAAAGGTTGGTGAA-C--------GGAC---------GG----CAGC--AAATAA-------GA------TAAATACTT---TAAAAAACAT--CAATTT-TGTGACAA-ATAACA--CATGTAT-AAGTGATA-ACCAACAGCTTGTTCAAATAAA-CGGCTAGTTTCCAAGTTACTTTAAT------------------------------------GAGTGAGAGAGAGGA----AGGA--AGAGTTCAAAG----A--GCGCT-G---------TGA-----T----------AAAACAC--GTTAAATAATCAAC--------ATTAATTGCTA
droYak3 2R:11568607-11568863 - GGCAGT-CGACGCTGACTCGTTCAGTTTTTTTCGAAGAAC-AAGCGACAAAGGTTGGTGAA-C--------GGAC---------GG----TG--------AA-------GA------TAAATACTT---TAAAAAACAT--CAATTT-TGTGACAA-ATAACA--CATGCAT-AAGTGATAAACCAACAGCTTGTTTAAATAAG-CGGCTAGTTTCCAAGTTACTTCAAC--------------------GAAAGACAAAGAGAAAGAGAGAGA------G----AGAA--GGAGTTCAAAG----A--GCGCT-G---------TGA-----T----------AAAACAC--GTTAAATAACTAAT--------ATTAATTGCTA
droEug1 scf7180000409672:7421348-7421585 + GGCAGT-CGACGCCAACTCGTTCACTTATTTTCGAAGAAC-GAGCGGCAAAGGTTGGTGAA-C--------GCAG---------GG----CAAG--AAATTA-------AA------TAA-AACTTAA-AAAAAAACAT--AAATTTGTGTGATAA-ATACCAGACA--AACAAAGTGATAAACTGGCTTATTGATTCAATAAG-CAGCTAGTTTTAGAATTACATTAAA------------------------------------GAGAAACA------G--AGAGA-------TATAAAG----AGAGCGTG-G---------TGA-----T----------TAG-C------------ATCATC--------ATTAATTACTT
droBia1 scf7180000301754:4703815-4704051 + GGCAGT-CGACGCCAACTCGTTCAGTTTTTTTCGAAGAAC-AAGCGGCAAAGGTTGGTGAA-C--------GGAG--CTCT---GG----AAGC--AGATAA-------AATAAAATGAAATACTTGTTTAATCGACAT--AAACTC-AGTGACAA-ATGCC------------AGTGCCA-GCAGGCTGCTGGCT-AAATAAAACAAATAC------------CCGCTG-A---------------------------------GGAGAGAGT------G--AGAGGT----TCCCCCGAG----A--GTGC------------TGA-----C----------CGAACAC--GTTGAATTGCCC-T--------ATTAACTGCCG
droTak1 scf7180000415238:329368-329603 + GGCAGT-CGACGCCAACTCGTTCACTTTTTTTCGAAGAAC-AAGCGGCAAAGGTTGGTGAA-C--------GGCT---------------CGAT--AAATAA-------AA------TAAATACTTG--TAAAAAGCAT--ACATTT-TGTGATAA-ATACAT--TTTGTACAAAGTGCGAAGCAGGCTGCTTGATTTAGTAAA-CGAATCACTTTGAAGTTGCCTTAAA------------------------------------GAGAGAGC------G-----------------AAAG----A--GAGCG-G---------TGA-----T----------TAAACAC--GTTGATTTGTCAAC--------TTTATTTACCG
droEle1 scf7180000491186:254406-254650 + GGCAGT-CGACGCTGCCTCGTTCACTCTTCTTTGAAAATT-AAACGACAAAGGTTGGTGAA-C--------GCAG---------GG----CAA--------A-------AA------TAAAAACTGGT-TAAAAAACAT--A---TT-TGTGAATTAATACAAGACA--TATAAAGTGATACACTGGCTGCTTATTGCAGCAAA-TAGTTCGTTTTGAAGTTGACTTAAA-G---------------------------------AGAGC----------------------AAGTTTAAAG----A--GAGAC-A---------TGAGATGGTCAATTCGGGTTAAACAC--GTTACAAACCTAAT--------GT----AACCG
droRho1 scf7180000778397:1403-1648 + GGCAGT-CGAAGCATACTCGTTCAGTTTTCTTTCAAAATT-AAACGACAAAGGTTGGTGGA-C--------GCAG---------GG----CAA--------A-------AA------TAAAAACTT---CAAAAAACAT--ACATTT-TGTGAATCAATACAAGACA--TATAAAGTGCTAAACCTGCTGCCTATTTGAATAAA-TAGTTATTTTTTAAATTTCATTAAGCA---------------------------------AGAGC----------------------AAGTTCAAAG----A--GAGGC-A---------CGG-----TCAATTCAGAGTTAACAC--GTAGTAATGTTGAC--------TTTACTTAACC
droFic1 scf7180000453858:6704-6970 + GGCAGT-CGACGCCAACTCGTTCACTTTTTTTCGAGAATC-AAACGACAAAGGTTGGTGAA-C--------GCAG---------GG----CAGGAAAAAAAA-------AC------TTAAGACTTC--ATAAAAACAT--AAATTC-TGTGATAA-ATACAAGACA--GTCAAAGTGTCAAACTGGCTGCCAAATTAAAAAAA-CGTCTAGTTCTGGAGTTT---CAAA-A---------------------------------AGAGAAAGA------G--AGAGAGAGCGCTCTCAAAGAAAGA--GAGAC-A---------CGT-----TCGATTCTTATTAAGCAC--GTTAAAGTACCAAT--------TTT-ATTGACT
droKik1 scf7180000302366:350494-350754 - GGCAGT-GGACGCCACCTCGTTCAGTTTTCTTCCAGAAACTCAGCGACAAAGGTTGGTGAA-T--------GCAGAAATTA---AGAAGTCAAC--AAAAAA-------AA------AAAAAAATT---AA-GAAAAGTTACAATTT-TTTAACAA-CTACA-----------AAGTGCCTACTTCGCCAAGTAACTTAATAAA-CTAATAGTGCTG---------CTA------------------------------------AGAGAGAGA------TAAAG------AGA-GTCAAAG----A--GCGTCGGTACCACGCACAC-----CAACATCAGACCAAGCAC--GTTGAGTGTTTAAG--------CCTAAATATCA
droAna3 scaffold_13266:10999940-11000163 + GGCAAT-CGACGCCACATTGTTTAGTTATTTTTTAGAGAC-AAGCGATAAAGGTTGGTTAG-C--------TCCT---------------CAAG---------------------------AAGTT---CAAACAG------AATCC-AGTGAAAA-ATAGTACAGA--ATCAAAGTGTAA-AC----AGTTCAGCCAACAAGA-AGAATGATTTTTCTGC-----------------------------AAAAATCAAAC----AGAAGGAGT------A--AGAGGC--GTGGCGCAAAG----T--ACTCT-T---------GT---------------------CTT--GGAAAAATATTAAC--------AAAAGAGGCTT
droBip1 scf7180000396547:1464498-1464741 - GGCAAT-CGACGCCACATTGTTTAGTTATTTTTTAGAGAC-AAGCGTTAAAGGTTGGTTAGACATTTCGTCTCCT-----------------------------------C------CAA-AAGTT---GAAAAAGAAT--TATTTC-AGTGAAAT-TAAGTAGAAA--ATCAAAGTGTTAA-C----AGTTGA------------------------------CTTCAA-AAAAGAAAGATTTTTCTGCAAAAAATAACC----AG---------------------------------AA----G--GCGTG-G---CGTGCA-TT-----ACTCTCCTCACTGAGCACTTGGAAATCTATTAATTAAAACGGCTTTCTTGCTT
dp5 3:15168148-15168236 + ACTAGCGCGACGCCACCTCGTTCAGTT-----CGAA--AG-AAACGACAGAGGTTGGTAAA-C--------GTTG---TCTGAAGG-----AA--------AAATATAAAATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAAAG----A-------------------------------------------------------------------------------
droPer2 scaffold_4:3882823-3882911 - ACTAGCGCGACGCCACCTCGTTCAGTT-----CGAA--AG-AAACGACAGAGGTTGGTAAA-C--------GTTG---TCTGAAGG-----AA--------AAATATAAAATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAAAG----A-------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GGCAGT-CGACGCTGACTCGTTCAGTTTTTTTGGAACCAC-AAGCGACAAAGGTTGGTGAA-C--------GGAC---------GG----CAGC--AAACGA-------GA------TAAAAACTT---TA-AAAACAT--CAATTT-TGTGACAT-ATAACA--CATGTAT-AAGTGATAAACCAACAGCTTGTTCAAATAAA-CGGCTAGTTTCCAAGTAACTCCAAA-A---------------------------------AGAGCGAGC------A--CGAGGA--AGAGTTCAAAG----A--GCGCT-G---------TGA-----T----------AAAACAC--GTTAAATAACCAGC--------ATTAATTGCCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................GCGACAAAGGTTGGTGAA-C--------...........................................................................................................................................................................................................................................................................................................................1916.00600400000000200000
...............................................CAAAGGTTGGTGAA-C--------GGAC---------GG----........................................................................................................................................................................................................................................................................................................2114.00400000000000004000
..........................................AGCGACAAAGGTTGGTGAA-C--------...........................................................................................................................................................................................................................................................................................................................2013.00310000000000200000
.........................................AAGCGACAAAGGTTGGTG.......................................................................................................................................................................................................................................................................................................................................1813.00320100000000000000
...........................................GCGACAAAGGTTGGTGAA-C--------GGAC---------GG----........................................................................................................................................................................................................................................................................................................2513.00300000000000012000
..................................................AGGTTGGTGAA-C--------GGAC---------GG----........................................................................................................................................................................................................................................................................................................1812.00200000000000002000
.................................................AAGGTTGGTGAA-C--------GGAC---------GG----CAGC--A.................................................................................................................................................................................................................................................................................................2412.00200000000000002000
..........................................................GAA-C--------GGAC---------GG----CAGC--AAAC..............................................................................................................................................................................................................................................................................................1812.00210100000000000000
.........................................................TGAA-C--------GGAC---------GG----CAGC--AAACGA-------.....................................................................................................................................................................................................................................................................................2112.00200000000000002000
..................................................AGGTTGGTGAA-C--------GGAC---------GG----CAGC--AAAC..............................................................................................................................................................................................................................................................................................2611.00100100000000000000
...........................................GCGACAAAGGTTGGTGAA-C--------GGAC---------GG----C.......................................................................................................................................................................................................................................................................................................2611.00100000000000001000
..............................................................C--------GGAC---------GG----CAGC--AAACGA-------GA------TAAAAA.......................................................................................................................................................................................................................................................................2511.00110000000000000000
...........................................GCGACAAAGGTTGGTGAA-C--------GGAC---------GG----CA......................................................................................................................................................................................................................................................................................................2711.00100000000000001000
..................................................AGGTTGGTGAA-C--------GGAC---------GG----CAGC--AA................................................................................................................................................................................................................................................................................................2411.00101000000000000000
..................................................AGGTTGGTGAA-C--------GGAC---------GG----CAG.....................................................................................................................................................................................................................................................................................................2111.00100000000000001000
...........................................GCGACAAAGGTTGGTGAA-C--------GGAC---------..............................................................................................................................................................................................................................................................................................................2311.00100000000000001000
...................................................GGTTGGTGAA-C--------GGAC---------GG----C.......................................................................................................................................................................................................................................................................................................1811.00100000000001000000
...................................................GGTTGGTGAA-C--------GGAC---------GG----CAGC--AAAC..............................................................................................................................................................................................................................................................................................2511.00100000000000001000
..........................TTTTTTGGAACCAC-AAGCGACAAAGC.............................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
..........................................................GAA-C--------GGAC---------GG----CAGC--AAACGA-------.....................................................................................................................................................................................................................................................................................2011.00100000100000000000
........................................................................................................................................................................................................................................................................................................TCAAAG----A--GCGCT-G---------TGA-----T----------AAAAA.....................................2211.00100000000010000000
............................................CGACAAAGGTTGGTGAA-C--------GGAC---------GG----CAG.....................................................................................................................................................................................................................................................................................................2711.00100000000000001000
...............................................CAAAGGTTGGTGAA-C--------GGAC---------..............................................................................................................................................................................................................................................................................................................1911.00100000000000100000
.....................................................TTGGTGAA-C--------GGAC---------GG----CA......................................................................................................................................................................................................................................................................................................1711.00100000000001000000
.........................TTTTTTTGGAACCAC-AAGCG....................................................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
...................................................GGTTGGTGAA-C--------GGAC---------GG----CAGC--AA................................................................................................................................................................................................................................................................................................2311.00100000000000010000
.........................................................TGAA-C--------GGAC---------GG----CAGC--AAACGA-------GA------TA...........................................................................................................................................................................................................................................................................2511.00100000000000010000
................................................AAAGGTTGGTGAA-C--------GGAC---------GG----........................................................................................................................................................................................................................................................................................................2011.00100000000000001000
............................................CGACAAAGGTTGGTGAA-C--------GG.........................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
............................................CGACAAAGGTTGGTGAA-C--------...........................................................................................................................................................................................................................................................................................................................1811.00100010000000000000
............................................CGACAAAGGTTGGTGAA-C--------GGAC---------G.............................................................................................................................................................................................................................................................................................................2311.00100000000000001000
...........................................GCGACAAAGGTTGGTGAA-C--------GGA........................................................................................................................................................................................................................................................................................................................2211.00100000100000000000
................................................AAAGGTTGGTGAA-C--------GGAC---------GG----A.......................................................................................................................................................................................................................................................................................................2111.00100000000000010000
........................................................GTGAA-C--------GGAC---------GG----CAGC--AAACGA-------GA------T............................................................................................................................................................................................................................................................................2511.00100000010000000000
........................................................GTGAA-C--------GGAC---------GG----CAGC--AAACGA-------GA------.............................................................................................................................................................................................................................................................................2411.00101000000000000000
...........................................................AA-C--------GGAC---------GG----CAGC--AAACGA-------.....................................................................................................................................................................................................................................................................................1911.00110000000000000000
.........................................AAGCGACAAAGGTTGGTGAA-C--------GGAC---------..............................................................................................................................................................................................................................................................................................................2511.00100000000000001000
.....................................CAC-AAGCGACAAAGGTTG..........................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
............................................................A-C--------GGAC---------GG----CAGC--AAACGA-------GA------TA...........................................................................................................................................................................................................................................................................2211.00110000000000000000
..............................................................C--------GGAC---------GG----CAGC--AAACGA-------GA------TA...........................................................................................................................................................................................................................................................................2111.00100100000000000000
...................................................GGTTGGTGAA-C--------GGAC---------GG----CAGC--AAAA..............................................................................................................................................................................................................................................................................................2511.00100000000000010000
...........................................................................................................................................................................................................................................................................AGCGAGC------A--CGAGGA--AGA............................................................................................1711.00100000000001000000
............................................CGACAAAGGTTGGTGAA-C--------G..........................................................................................................................................................................................................................................................................................................................1911.00100000100000000000
................................................AAAGGTTGGTGAA-C--------GGAC---------..............................................................................................................................................................................................................................................................................................................1811.00100000000000100000
..............................................ACAAAGGTTGGTGAA-C--------GGAC---------..............................................................................................................................................................................................................................................................................................................2011.00100000000000100000
...................................ACCAC-AAGCGACAAAGGTT...........................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
............................................................A-C--------GGAC---------GG----CAGC--AAACGA-------GA------.............................................................................................................................................................................................................................................................................2011.00110000000000000000
..................................................AGGTTGGTGAA-C--------GGAC---------GG----CA......................................................................................................................................................................................................................................................................................................2011.00100000100000000000
.......................................................GGTGAA-C--------GGAC---------GG----CAGC--A.................................................................................................................................................................................................................................................................................................1811.00100000000001000000
.............................................GACAAAGGTTGGTGAA-C--------G..........................................................................................................................................................................................................................................................................................................................1811.00100000000000100000
............................................CGACAAAGGTTGGTGAA-C--------GGAC---------GG----C.......................................................................................................................................................................................................................................................................................................2511.00100000000000010000
......................................................TGGTGAA-C--------GGAC---------GG----CAGC--AAACGA-------GA------.............................................................................................................................................................................................................................................................................2611.00100000010000000000
.......................................................................GGAC---------GG----CAGC--AAACGA-------GA------.............................................................................................................................................................................................................................................................................1811.00110000000000000000
.................................................AAGGTTGGTGAA-C--------GGAC---------GG----CAGC--AAACG.............................................................................................................................................................................................................................................................................................2811.00100000000000001000
............................................CGACAAAGGTTGGTGAA-C--------GGAC---------GG----........................................................................................................................................................................................................................................................................................................2411.00100000000000001000
droSec2
GGCAGT-CGACGCTGACTCGTTCAGTTTTTTTGGAACCAC-AAGCGACAAAGGTTGGTGAA-C--------GGAC---------GG----CAGC--AAACAA-------GA------TAAAAACTT---TA-AAAACAT--CAATTT-TGTGACAT-ATAACA--CATGTAT-AAGTGATAAACCAACAGCTTGTTCAAATAAA-CGGCTAGTTTCCAAGTAACTCCAAG-A---------------------------------AGAGCGAGC------A--CGAGGA--AAAGTTCAAAG----A--GCGCT-G---------TGA-----T----------AAAACAC--GTTAAATAAGCAAC--------ATTAATTGCTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................CGACAAAGGTTGGTGAA-C--------...........................................................................................................................................................................................................................................................................................................................1816.0061041
...........................................GCGACAAAGGTTGGTGAA-C--------GGA........................................................................................................................................................................................................................................................................................................................2213.0031101
..................................................AGGTTGGTGAA-C--------GGAC---------GG----CAGC--A.................................................................................................................................................................................................................................................................................................2313.0030102
..................................................AGGTTGGTGAA-C--------GGAC---------GG----........................................................................................................................................................................................................................................................................................................1812.0022000
..........................................AGCGACAAAGGTTGGTGAA-C--------G..........................................................................................................................................................................................................................................................................................................................2112.0020101
...........................................GCGACAAAGGTTGGTGAA-C--------GGAC---------GG----........................................................................................................................................................................................................................................................................................................2512.0022000
...........................................GCGACAAAGGTTGGTGAA-C--------GGAC---------G.............................................................................................................................................................................................................................................................................................................2412.0021100
...........................................GCGACAAAGGTTGGTGAA-....................................................................................................................................................................................................................................................................................................................................1812.0020011
...................................ACCAC-AAGCGACAAAGGT............................................................................................................................................................................................................................................................................................................................................1812.0020020
...........................................GCGACAAAGGTTGGTGAA-C--------GGAC---------GG----C.......................................................................................................................................................................................................................................................................................................2612.0020101
............................................CGACAAAGGTTGGTGAA-C--------GGA........................................................................................................................................................................................................................................................................................................................2112.0020101
....................................................GTTGGTGAA-C--------GGAC---------GG----CA......................................................................................................................................................................................................................................................................................................1812.0020020
.............................................GACAAAGGTTGGTGAA-C--------G..........................................................................................................................................................................................................................................................................................................................1811.0010010
....................................CCAC-AAGCGACAAAGGTTGG.........................................................................................................................................................................................................................................................................................................................................2011.0010010
..................................AACCAC-AAGCGACAAAGG.............................................................................................................................................................................................................................................................................................................................................1811.0010010
..........................................AGCGACAAAGGTTGGTGAA-C--------GGA........................................................................................................................................................................................................................................................................................................................2311.0010001
....................................................GTTGGTGAA-C--------GGAC---------GG----CAGC--AAACAA-------.....................................................................................................................................................................................................................................................................................2611.0010001
...................................................GGTTGGTGAA-C--------GGAC---------GG----C.......................................................................................................................................................................................................................................................................................................1811.0010010
......................................AC-AAGCGACAAAGGTTGGTGAA-C--------GGA........................................................................................................................................................................................................................................................................................................................2611.0010001
.......................................................GGTGAA-C--------GGAC---------GG----CAGC--AAA...............................................................................................................................................................................................................................................................................................2011.0010001
...................................................GGTTGGTGAA-C--------GGAC---------GG----CAGC--A.................................................................................................................................................................................................................................................................................................2211.0010001
..............................................ACAAAGGTTGGTGAA-C--------GGA........................................................................................................................................................................................................................................................................................................................1911.0010001
.................................................AAGGTTGGTGAA-C--------GGAC---------GG----CAGC--..................................................................................................................................................................................................................................................................................................2311.0010001
.......................................................GGTGAA-C--------GGAC---------GG----CAGC--AAACAA-------GA------T............................................................................................................................................................................................................................................................................2611.0011000
................................................AAAGGTTGGTGAA-C--------GGAC---------G.............................................................................................................................................................................................................................................................................................................1911.0010100
.........................................AAGCGACAAAGGTTGGTGAA-C--------GGAC---------..............................................................................................................................................................................................................................................................................................................2511.0010100
..................................................AGGTTGGTGAA-C--------GGAC---------GG----CAGC--AAA...............................................................................................................................................................................................................................................................................................2511.0010100
..................................................AGGTTGGTGAA-C--------GGAC---------GG----CAGC--AAACAA-------.....................................................................................................................................................................................................................................................................................2811.0010100
....................................................GTTGGTGAA-C--------GGAC---------GG----CAG.....................................................................................................................................................................................................................................................................................................1911.0010100
............................................CGACAAAGGTTGGTGAA-C--------G..........................................................................................................................................................................................................................................................................................................................1911.0010010
.........................................AAGCGACAAAGGTTGGTGAA-....................................................................................................................................................................................................................................................................................................................................2011.0010100
..........................................................GAA-C--------GGAC---------GG----CAGC--AAACAA-------GA------TAAAAA.......................................................................................................................................................................................................................................................................2811.0010100
......................................................TGGTGAA-C--------GGAC---------GG----CAGC--A.................................................................................................................................................................................................................................................................................................1911.0010001
..........................................AGCGACAAAGGTTGGTGAA-C--------...........................................................................................................................................................................................................................................................................................................................2011.0010001
............................................CGACAAAGGTTGGTGAA-C--------GGAC---------GG----........................................................................................................................................................................................................................................................................................................2411.0011000
.........................................AAGCGACAAAGGTTGGTGAA-C--------GGA........................................................................................................................................................................................................................................................................................................................2411.0010001
..................................................AGGTTGGTGAA-C--------GGAC---------GG----CAGC--AA................................................................................................................................................................................................................................................................................................2411.0010001
......................................AC-AAGCGACAAAGGTTGGTGAA-C--------GGAC---------..............................................................................................................................................................................................................................................................................................................2711.0011000
.............................................................................................................................................................................................................................AACTCCAAG-A---------------------------------AGAGCGAGC------A--CG.....................................................................................................2211.0011000
.............................................GACAAAGGTTGGTGAA-C--------GGAC---------..............................................................................................................................................................................................................................................................................................................2111.0010010
...................................................GGTTGGTGAA-C--------GGAC---------GG----CAGC--AA................................................................................................................................................................................................................................................................................................2311.0010001
..........................................AGCGACAAAGGTTGGTGAA-C--------GGAC---------GG----C.......................................................................................................................................................................................................................................................................................................2711.0010100
......................................AC-AAGCGACAAAGGTTGGTGAA-C--------...........................................................................................................................................................................................................................................................................................................................2311.0010100
dm3
GGCAGT-CGACGCTGACTCGTTCAGTTTTTTTTGAAGCAC-AAGCGACAAAGGTTGGTGAA-C--------GGAC---------GG----CAGC--AAATAA-------GA------TAAAAACTT---TA-AAAACAT--CAATTT-TGTGACAT-ATAACG--CATGCAT-TAGTGATAAACCAACAACTTGTTCAAATAAA-CGGCTAGTTTGCAACTTACTCCAAC-A---------------------------------AGAGCGAGC------G--AGAGGA--AGAGTTCAAAG----A--GCGCT-G---------TGA-----T----------AAAACAC--GTTAAAAAACCAAC--------ATTAATTGCTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................AGGTTGGTGAA-C--------GGAC---------GG----........................................................................................................................................................................................................................................................................................................181165.0016500000000000000000000000000000000000000000000000000010000000000000000000000000000000002010000100100000000124304000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002130000013110001600900001020002010010120000102000102015101000000000340301010110403200020100111049505443200000000804340
...........................................GCGACAAAGGTTGGTGAA-....................................................................................................................................................................................................................................................................................................................................181105.0010500000000000000000000000000000000000000000000101000000000000000000000000000000000000000021000100200000000491510010000000000000000001000000000000000001000000000000000000000000000000010000000001000000100000000000000002000000000000000000000000002010000204020221100007133111000000001000100000000601100001000003000000001000000000028100
...................................................GGTTGGTGAA-C--------GGAC---------GG----C.......................................................................................................................................................................................................................................................................................................18152.00520000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000031200100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000100000000000000000000011010001000000000100000000000000100001000100401011000111001501121200000000121200
............................................CGACAAAGGTTGGTGAA-C--------G..........................................................................................................................................................................................................................................................................................................................19134.00340000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000001001011000000000000000200000010100010001100000015101332000000000103000
...........................................GCGACAAAGGTTGGTGAA-C--------G..........................................................................................................................................................................................................................................................................................................................20133.00330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000100000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000100000100000000000000010000000000010002001000012013100231001120000112100
............................................CGACAAAGGTTGGTGAA-C--------GGA........................................................................................................................................................................................................................................................................................................................21129.00290000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000200010010100002000000000000000010000000000000200000000000101202021102110000202000
.............................................GACAAAGGTTGGTGAA-C--------G..........................................................................................................................................................................................................................................................................................................................18127.00270000000000000000000000000000000000000000000000000000000000010000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000001000021000000000000010000001221100001110100311001000001000000000010000
..................................................AGGTTGGTGAA-C--------GGAC---------GG----C.......................................................................................................................................................................................................................................................................................................19127.00270000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000000100000000000100000000000000023100040700000000004200
.......................AGTTTTTTTTGAAGCAC-AAGCGA...................................................................................................................................................................................................................................................................................................................................................23127.00270000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102000020000000000000000000000000000000000300000002001100000000003000100000000000302010000010000200001000000000001000
...........................................GCGACAAAGGTTGGTGAA-C--------GGAC---------..............................................................................................................................................................................................................................................................................................................23126.00260000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000100000000000100000000000000001000000000100000100001001000000000000000000000000000002000000011000110141110010000001000
...................................................GGTTGGTGAA-C--------GGAC---------GG----CAGC--A.................................................................................................................................................................................................................................................................................................22125.00250000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000001000000000000001100000000000000000000000000000000000000000000010122201111000000000202300
.......................AGTTTTTTTTGAAGCAC-AAGCG....................................................................................................................................................................................................................................................................................................................................................22125.00250000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000200000000003100100000000001100300000000000101000000000000302111000000000000000
................................................AAAGGTTGGTGAA-C--------GGAC---------..............................................................................................................................................................................................................................................................................................................18125.00250000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000100000200010000000000000000010001100000000100000203000001000500020001100000
...................................AGCAC-AAGCGACAAAGGT............................................................................................................................................................................................................................................................................................................................................18123.00230000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000200000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000101000000000000000000000000000000000000000200100001230100000000000000100000000100100000000100000000100000000000001000
...........................................GCGACAAAGGTTGGTGAA-C--------GGA........................................................................................................................................................................................................................................................................................................................22123.00230000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000101000000001000000000000000000100000000010000000000000000000000000100000000000000001000000000001101153000010000001010
...................................................GGTTGGTGAA-C--------GGAC---------GG----CAG.....................................................................................................................................................................................................................................................................................................20123.00230000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000010000000000000000000000000000001000000003000000100002201040000000000022000
...............................................CAAAGGTTGGTGAA-C--------GGA........................................................................................................................................................................................................................................................................................................................18122.00220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000001001000010100000000000000000000000000100000000000000000200501010000100000032100
.......................................................GGTGAA-C--------GGAC---------GG----CAGC--A.................................................................................................................................................................................................................................................................................................18121.00210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000100001000000000000000100000000010100001000100000012000101200000000022200
.........................................AAGCGACAAAGGTTGGTGAA-....................................................................................................................................................................................................................................................................................................................................20118.00180000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000001210000010000000000000000000000000000000400002010000000000100200000000000000010
......................................AC-AAGCGACAAAGGTTGG.........................................................................................................................................................................................................................................................................................................................................18117.00170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000101000000000000000000000000000000000300000010101000000000000000000010000000000001200000000000000100000000000000002000
..................................................AGGTTGGTGAA-C--------GGAC---------GG----CAG.....................................................................................................................................................................................................................................................................................................21117.00170000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000002100000000010100000000000001100000000000000100010000010000111200
..........................................AGCGACAAAGGTTGGTGA......................................................................................................................................................................................................................................................................................................................................18115.00150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000001000000000000000000000000000000000000000000000000000100000000025000
.........................................AAGCGACAAAGGTTGGTG.......................................................................................................................................................................................................................................................................................................................................18115.00150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000100000000000000000000001000000000000110200011000000002000000000000000000000000300000000000000000001000000000000000000
............................................CGACAAAGGTTGGTGAA-C--------GGAC---------GG----........................................................................................................................................................................................................................................................................................................24115.00150000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000100000001001100000000000000000000000000000000000000001000000000000000000000000000001000000010002000000000000000002100
...................................................GGTTGGTGAA-C--------GGAC---------GG----CAGC--..................................................................................................................................................................................................................................................................................................21114.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000001110003111000000000003100
...........................................GCGACAAAGGTTGGTGAA-C--------GGAC---------GG----........................................................................................................................................................................................................................................................................................................25113.00130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000011001100031000001100000010
..............................................ACAAAGGTTGGTGAA-C--------GG.........................................................................................................................................................................................................................................................................................................................18113.00130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000300100000000000001000000000000000000000300000000001000000000000000000000000210000
............................................CGACAAAGGTTGGTGAA-C--------...........................................................................................................................................................................................................................................................................................................................18113.00130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102110110102000001000000000000000000000000000000000000000000000000000000000011000
...........................................GCGACAAAGGTTGGTGAA-C--------GGAC---------GG----C.......................................................................................................................................................................................................................................................................................................26113.00130000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000100000000000000000000000000000000000001000001000000012000000220000000000001000
..........................................AGCGACAAAGGTTGGTGAA-....................................................................................................................................................................................................................................................................................................................................19112.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000010000100000000000012001100101000000000001000
.............................................GACAAAGGTTGGTGAA-C--------GGA........................................................................................................................................................................................................................................................................................................................20112.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000100000000000000100000000000000000000000000000000000000000000000100200000000010001000000000000000200010
...........................................GCGACAAAGGTTGGTGAA-C--------...........................................................................................................................................................................................................................................................................................................................19111.00110000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000100000000000000010100100010000000000000000000000000000000000000000000101000010000000000001000
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....................................GCAC-AAGCGACAAAGGT............................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................C---------GG----CAGC--AAATAA-------GA------TAAAAACT.....................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................CGACAAAGGTTGGTGAA-C--------GGAC---------GG----CA......................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..........................................................................................................................................................................................ACAACTTGTTCAAATAAA-CGGCT................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..............................................ACAAAGGTTGGTGAA-C--------GGAA---------TC----........................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................CAAAG----A--GCGCT-G---------TGA-----T----------AAAAC.....................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................AC-AAGCGACAAAGGTTGGTGAA-C--------GGAC---------..............................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
.......................................................................GGAC---------GG----CAGC--AAATAA-------GA------TAAAAACTT---.................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................GCAC-AAGCGACAAAGGTT...........................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
droEre2
GGCAGT-CGACGCTGACTCGTTCAGTTTTTTTCGAAGAAC-AAGCGACAAAGGTTGGTGAA-C--------GGAC---------GG----CAGC--AAATAA-------GA------TAAATACTT---TAAAAAACAT--CAATTT-TGTGACAA-ATAACA--CATGTAT-AAGTGATA-ACCAACAGCTTGTTCAAATAAA-CGGCTAGTTTCCAAGTTACTTTAAT------------------------------------GAGTGAGAGAGAGGA----AGGA--AGAGTTCAAAG----A--GCGCT-G---------TGA-----T----------AAAACAC--GTTAAATAATCAAC--------ATTAATTGCTASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................AGGTTGGTGAA-C--------GGAC---------GG----........................................................................................................................................................................................................................................................................................................1813.0031000200
................................................AAAGGTTGGTGAA-C--------GGAC---------..............................................................................................................................................................................................................................................................................................................1813.0031001010
............................TTTTCGAAGAAC-AAGCGACAAAGGT............................................................................................................................................................................................................................................................................................................................................2512.0020000002
............................................CGACAAAGGTTGGTGAA-C--------G..........................................................................................................................................................................................................................................................................................................................1911.0011000000
....................................................................................................................................................................................................................................................................................GAGGA----AGGA--AGAGTTCAAAG----A--GC...........................................................................2311.0010000010
............................................CGACAAAGGTTGGTGAA-C--------...........................................................................................................................................................................................................................................................................................................................1811.0010000010
...............................................CAAAGGTTGGTGAA-C--------GGAC---------..............................................................................................................................................................................................................................................................................................................1911.0010000010
...............................................CAAAGGTTGGTGAA-C--------GGA........................................................................................................................................................................................................................................................................................................................1811.0010000010
......................................AC-AAGCGACAAAGGTTGGT........................................................................................................................................................................................................................................................................................................................................1911.0010000010
.........................................................................AC---------GG----CAGC--AAATAA-------GA------TAAATACT.....................................................................................................................................................................................................................................................................2411.0010000100
.............................................GACAAAGGTTGGTGAA-C--------GGAC---------..............................................................................................................................................................................................................................................................................................................2111.0010000010
...........................................GCGACAAAGGTTGGTGAA-C--------G..........................................................................................................................................................................................................................................................................................................................2011.0010000010
....................................................GTTGGTGAA-C--------GGAC---------GG----CAG.....................................................................................................................................................................................................................................................................................................1911.0010000010
...........................................GCGACAAAGGTTGGTGAA-C--------...........................................................................................................................................................................................................................................................................................................................1911.0010001000
droYak3
GGCAGT-CGACGCTGACTCGTTCAGTTTTTTTCGAAGAAC-AAGCGACAAAGGTTGGTGAA-C--------GGAC---------GG----TG--------AA-------GA------TAAATACTT---TAAAAAACAT--CAATTT-TGTGACAA-ATAACA--CATGCAT-AAGTGATAAACCAACAGCTTGTTTAAATAAG-CGGCTAGTTTCCAAGTTACTTCAAC--------------------GAAAGACAAAGAGAAAGAGAGAGA------G----AGAA--GGAGTTCAAAG----A--GCGCT-G---------TGA-----T----------AAAACAC--GTTAAATAACTAAT--------ATTAATTGCTASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................TTTTCGAAGAAC-AAGCGACAAAGGT............................................................................................................................................................................................................................................................................................................................................25116.0016000000000016
.............................TTTCGAAGAAC-AAGCGACAAAGGT............................................................................................................................................................................................................................................................................................................................................24114.0014000000000014
.............................................................................................................................................................................................................................................................................................AGAA--GGAGTTCAAAG----A--GCGCT-G---------TGA-----.....................................................25113.0013000000000013
...........................TTTTTCGAAGAAC-AAGCGACAAAGGTT...........................................................................................................................................................................................................................................................................................................................................2719.00900000000009
..........................TTTTTTCGAAGAAC-AAGCGACAAAGGT............................................................................................................................................................................................................................................................................................................................................2718.00800000000008
................................................................................................................................................................................................................................................................CAAAGAGAAAGAGAGAGA------G----AGAA--GGAG...........................................................................................2716.00600000000006
...................................AGAAC-AAGCGACAAAGGTTGGTGA......................................................................................................................................................................................................................................................................................................................................2413.00300000000003
.................................................................................................................................................................................................................TAGTTTCCAAGTTACTTCAAC--------------------GAAAGA..................................................................................................................................2712.00200000000002
............................................CGACAAAGGTTGGTGAA-C--------...........................................................................................................................................................................................................................................................................................................................1811.00100010000000
...............................................CAAAGGTTGGTGAA-C--------GGA........................................................................................................................................................................................................................................................................................................................1811.00100010000000
............................TTTTCGAAGAAC-AAGCGA...................................................................................................................................................................................................................................................................................................................................................1811.00100000000001
...........................TTTTTCGAAGAAC-AAGCGAC..................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
......................CAGTTTTTTTCGAAGAAC-AAGCGAC..................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
...........................................GCGACAAAGGTTGGTGAA-C--------G..........................................................................................................................................................................................................................................................................................................................2011.00100010000000
...........................................GCGACAAAGGTTGGTGAA-C--------GGAC---------GG----TG--------..............................................................................................................................................................................................................................................................................................2711.00100100000000
.........................................AAGCGACAAAGGTTGGTGAA-C--------...........................................................................................................................................................................................................................................................................................................................2111.00100001000000
....................................................GTTGGTGAA-C--------GGAC---------GG----T.......................................................................................................................................................................................................................................................................................................1711.00100000100000
.............................TTTCGAAGAAC-AAGCGACA.................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
...................................................GGTTGGTGAA-C--------GGAC---------GG----T.......................................................................................................................................................................................................................................................................................................1811.00100100000000
....................................GAAC-AAGCGACAAAGGTTGG.........................................................................................................................................................................................................................................................................................................................................2011.00100100000000
.........................................AAGCGACAAAGGTTGGTGA......................................................................................................................................................................................................................................................................................................................................1911.00100000010000
droEug1
GGCAGT-CGACGCCAACTCGTTCACTTATTTTCGAAGAAC-GAGCGGCAAAGGTTGGTGAA-C--------GCAG---------GG----CAAG--AAATTA-------AA------TAA-AACTTAA-AAAAAAACAT--AAATTTGTGTGATAA-ATACCAGACA--AACAAAGTGATAAACTGGCTTATTGATTCAATAAG-CAGCTAGTTTTAGAATTACATTAAA------------------------------------GAGAAACA------G--AGAGA-------TATAAAG----AGAGCGTG-G---------TGA-----T----------TAG-C------------ATCATC--------ATTAATTACTTSizeHit CountTotal NormTotal
No Reads
droBia1
GGCAGT-CGACGCCAACTCGTTCAGTTTTTTTCGAAGAAC-AAGCGGCAAAGGTTGGTGAA-C--------GGAG--CTCT---GG----AAGC--AGATAA-------AATAAAATGAAATACTTGTTTAATCGACAT--AAACTC-AGTGACAA-ATGCC------------AGTGCCA-GCAGGCTGCTGGCT-AAATAAAACAAATAC------------CCGCTG-A---------------------------------GGAGAGAGT------G--AGAGGT----TCCCCCGAG----A--GTGC------------TGA-----C----------CGAACAC--GTTGAATTGCCC-T--------ATTAACTGCCGSizeHit CountTotal NormTotal
No Reads
droTak1
GGCAGT-CGACGCCAACTCGTTCACTTTTTTTCGAAGAAC-AAGCGGCAAAGGTTGGTGAA-C--------GGCT---------------CGAT--AAATAA-------AA------TAAATACTTG--TAAAAAGCAT--ACATTT-TGTGATAA-ATACAT--TTTGTACAAAGTGCGAAGCAGGCTGCTTGATTTAGTAAA-CGAATCACTTTGAAGTTGCCTTAAA------------------------------------GAGAGAGC------G-----------------AAAG----A--GAGCG-G---------TGA-----T----------TAAACAC--GTTGATTTGTCAAC--------TTTATTTACCGSizeHit CountTotal NormTotal
No Reads
droEle1
GGCAGT-CGACGCTGCCTCGTTCACTCTTCTTTGAAAATT-AAACGACAAAGGTTGGTGAA-C--------GCAG---------GG----CAA--------A-------AA------TAAAAACTGGT-TAAAAAACAT--A---TT-TGTGAATTAATACAAGACA--TATAAAGTGATACACTGGCTGCTTATTGCAGCAAA-TAGTTCGTTTTGAAGTTGACTTAAA-G---------------------------------AGAGC----------------------AAGTTTAAAG----A--GAGAC-A---------TGAGATGGTCAATTCGGGTTAAACAC--GTTACAAACCTAAT--------GT----AACCGSizeHit CountTotal NormTotal
No Reads
droRho1
GGCAGT-CGAAGCATACTCGTTCAGTTTTCTTTCAAAATT-AAACGACAAAGGTTGGTGGA-C--------GCAG---------GG----CAA--------A-------AA------TAAAAACTT---CAAAAAACAT--ACATTT-TGTGAATCAATACAAGACA--TATAAAGTGCTAAACCTGCTGCCTATTTGAATAAA-TAGTTATTTTTTAAATTTCATTAAGCA---------------------------------AGAGC----------------------AAGTTCAAAG----A--GAGGC-A---------CGG-----TCAATTCAGAGTTAACAC--GTAGTAATGTTGAC--------TTTACTTAACCSizeHit CountTotal NormTotal
No Reads
droFic1
GGCAGT-CGACGCCAACTCGTTCACTTTTTTTCGAGAATC-AAACGACAAAGGTTGGTGAA-C--------GCAG---------GG----CAGGAAAAAAAA-------AC------TTAAGACTTC--ATAAAAACAT--AAATTC-TGTGATAA-ATACAAGACA--GTCAAAGTGTCAAACTGGCTGCCAAATTAAAAAAA-CGTCTAGTTCTGGAGTTT---CAAA-A---------------------------------AGAGAAAGA------G--AGAGAGAGCGCTCTCAAAGAAAGA--GAGAC-A---------CGT-----TCGATTCTTATTAAGCAC--GTTAAAGTACCAAT--------TTT-ATTGACTSizeHit CountTotal NormTotal
No Reads
droKik1
GGCAGT-GGACGCCACCTCGTTCAGTTTTCTTCCAGAAACTCAGCGACAAAGGTTGGTGAA-T--------GCAGAAATTA---AGAAGTCAAC--AAAAAA-------AA------AAAAAAATT---AA-GAAAAGTTACAATTT-TTTAACAA-CTACA-----------AAGTGCCTACTTCGCCAAGTAACTTAATAAA-CTAATAGTGCTG---------CTA------------------------------------AGAGAGAGA------TAAAG------AGA-GTCAAAG----A--GCGTCGGTACCACGCACAC-----CAACATCAGACCAAGCAC--GTTGAGTGTTTAAG--------CCTAAATATCASizeHit CountTotal NormTotal
No Reads
droAna3
GGCAAT-CGACGCCACATTGTTTAGTTATTTTTTAGAGAC-AAGCGATAAAGGTTGGTTAG-C--------TCCT---------------CAAG---------------------------AAGTT---CAAACAG------AATCC-AGTGAAAA-ATAGTACAGA--ATCAAAGTGTAA-AC----AGTTCAGCCAACAAGA-AGAATGATTTTTCTGC-----------------------------AAAAATCAAAC----AGAAGGAGT------A--AGAGGC--GTGGCGCAAAG----T--ACTCT-T---------GT---------------------CTT--GGAAAAATATTAAC--------AAAAGAGGCTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................AGTTATTTTTTAGAGAC-AAGCGATAAA...............................................................................................................................................................................................................................................................................................................................................2711.001100000
droBip1
GGCAAT-CGACGCCACATTGTTTAGTTATTTTTTAGAGAC-AAGCGTTAAAGGTTGGTTAGACATTTCGTCTCCT-----------------------------------C------CAA-AAGTT---GAAAAAGAAT--TATTTC-AGTGAAAT-TAAGTAGAAA--ATCAAAGTGTTAA-C----AGTTGA------------------------------CTTCAA-AAAAGAAAGATTTTTCTGCAAAAAATAACC----AG---------------------------------AA----G--GCGTG-G---CGTGCA-TT-----ACTCTCCTCACTGAGCACTTGGAAATCTATTAATTAAAACGGCTTTCTTGCTTSizeHit CountTotal NormTotal
No Reads
dp5
ACTAGCGCGACGCCACCTCGTTCAGTT-----CGAA--AG-AAACGACAGAGGTTGGTAAA-C--------GTTG---TCTGAAGG-----AA--------AAATATAAAATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAAAG----A-------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................TGGTAAA-C--------GTTG---TCTGAAGG-----AA--------AAAT.........................................................................................................................................................................................................................................................................................2612.0020000000020
.....................TCAGTT-----CGAA--AG-AAACGACAGA...............................................................................................................................................................................................................................................................................................................................................2211.0010100000000
......................................................TGGTAAA-C--------GTTG---TCTGAAGG-----A......................................................................................................................................................................................................................................................................................................2111.0010000100000
..........................................................AAA-C--------GTTG---TCTGAAGG-----AA--------AAATA........................................................................................................................................................................................................................................................................................2311.0010100000000
...........................................................AA-C--------GTTG---TCTGAAGG-----AA--------A............................................................................................................................................................................................................................................................................................1811.0010100000000
......................................AG-AAACGACAGAGGTTGGT........................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...........................................................AA-C--------GTTG---TCTGAAGG-----AA--------AAATA........................................................................................................................................................................................................................................................................................2211.0010010000000
.............................................GACAGAGGTTGGTAAA-C--------G..........................................................................................................................................................................................................................................................................................................................1811.0010000100000
droPer2
ACTAGCGCGACGCCACCTCGTTCAGTT-----CGAA--AG-AAACGACAGAGGTTGGTAAA-C--------GTTG---TCTGAAGG-----AA--------AAATATAAAATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAAAG----A-------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................AAACGACAGAGGTTGGTAAA-C--------...........................................................................................................................................................................................................................................................................................................................2111.001000100

Generated: 05/19/2015 at 01:07 AM