ID:

dsi_15395

 Coordinate:

3r:4277480-4277630 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-15.9 -15.7 -15.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTAAGTTTTACCATTTCGAAAGTAGATAAACAGGTAAATATATTTAGAAAACTTGATTTCAGAGATGAACACATTTCCGTTGGACTTTCAAAACAATAGATTTATCTTAAATACTAGGAAACTAATTCTTTCTTTCAGAAAGATATATAATATGCTTATTACTTCACTAAATTCTAACCAATCCTTTTGTTTTTATTACAGTTGCCTGTCGCTGATCCGTTCCTAGAGAAAGTAAATCTATCAGACCTGGG
**************************************************..((((.((((((((((....))))))...))))...)))).................(((((..((((.......(((((((...)))))))....(((((....)))))....................))))..))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
...........................................................................................................................................................................................................GCCTGTCGCTGATCCGTT.............................. 18 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................................................................GTTGCCTGTCGCTGATCCGTTCCT........................... 24 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................................................CGCTGATCCGTTCCTAGAGAAA.................... 22 0 1 1.00 1 1 0 0 0 0 0
..........................................................................TTCCGTTGGACTTTCAAAA.............................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................GAGAAAGTAAATCTATCAGACCTGGG 26 0 1 1.00 1 0 1 0 0 0 0
..................................................................GAACACATTTCCGTTGGACT..................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................................CCTGTCGCTGATCCTTTCCT........................... 20 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................TCCGTTCCTAGGGAAA.................... 16 1 2 0.50 1 0 0 1 0 0 0
........................................TATTTAGAAAATTTGATTGCAGT............................................................................................................................................................................................ 23 3 4 0.50 2 0 0 0 2 0 0
.................................................................................................................................TTCTTTCAGAAAGAGA.......................................................................................................... 16 1 5 0.20 1 0 0 1 0 0 0
............................................................................CTGTTCGACTTTCAAAAC............................................................................................................................................................. 18 2 9 0.11 1 1 0 0 0 0 0
...........................................................................................................................................................................................................GCCCGTCGCTGACCCG................................ 16 2 20 0.05 1 0 0 0 0 1 0
...................................................................................................................................CTTTAAGAAGGAGATATAAT.................................................................................................... 20 3 20 0.05 1 0 0 0 0 1 0
..................................................CCCTGAATTCAGAGATGAA...................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0
....................................................TAGATTTCAGAGATGATGA.................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

AATTCAAAATGGTAAAGCTTTCATCTATTTGTCCATTTATATAAATCTTTTGAACTAAAGTCTCTACTTGTGTAAAGGCAACCTGAAAGTTTTGTTATCTAAATAGAATTTATGATCCTTTGATTAAGAAAGAAAGTCTTTCTATATATTATACGAATAATGAAGTGATTTAAGATTGGTTAGGAAAACAAAAATAATGTCAACGGACAGCGACTAGGCAAGGATCTCTTTCATTTAGATAGTCTGGACCC
**************************************************..((((.((((((((((....))))))...))))...)))).................(((((..((((.......(((((((...)))))))....(((((....)))))....................))))..))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
..........................................................................................................................................................................TAAGATAGGTTTAGAAAACAAA........................................................... 22 3 8 0.13 1 1 0
...................................................GAACTAAAGTCTCTAAA....................................................................................................................................................................................... 17 2 20 0.05 1 0 1
...................................................................................................................................................................AGTGATTTAGGTTTGGTT...................................................................... 18 2 20 0.05 1 0 1

Generated: 04/24/2015 at 12:18 AM