ID:

dsi_1539

 Coordinate:

3r:12357760-12357909 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-34.7 -34.5 -34.3

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CTCCAAAATATCCAGTGCAACAGCAGACGAACTTCTCGGCAGGATTGAGAGTGAGTAGTAGATCGAATTAAACAAATTAAATAATCCCAAACATTGTACATATGTACATACATTTATTTGTGCGCGGGGAAAGGCGGAAGTCAGAGAACTTGGCTTCCTGGTTTTTCATTTACCTTTTGGCGCTTCCGCCAAAACACTTAAACGCTCACTTAAAACCGCTTCTGGACAAATCAATAAAGGCCAAGTATCG
**************************************************.......((((((......................(((......(((((....)))))((((......))))...)))((((((((((((((((.....)))))))))..))))))))))))).((((((((....))))))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR902009
testis
 SRR1275487
Male larvae		 GSM343915
embryo
..........................................................................................................................CGCGGGTAAAGGCGGGAGT............................................................................................................. 19 2 2 2.50 5 5 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CGCGGGTAAAGGCGGGAGTA............................................................................................................ 20 3 5 1.20 6 5 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................GCGGGTAAAGGCGGGAGT............................................................................................................. 18 2 11 1.18 13 13 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................GGGCGGAAGTCGGAGAACTTGG................................................................................................. 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................TGAGAGTGAGTAGTAGATCG......................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................CAGAGAACTTGGCTTCCTGGT........................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................GACGAGCTTCTCGGCAGGATT............................................................................................................................................................................................................ 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................TGAGAGTGAGTAGAAGATCGAA....................................................................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................................GAAAGGCGGAAGTCAGAGAACTT................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................CAGGATTGAGAGTGGGTAGTA.............................................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................CGTTTATTTGTGCGCGGGGAA....................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................ATACATCTATTTGTGCGCGTCG......................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CTTCTGGACAAATCAATAAAG........... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................AGTAGTCGGCTTCCTGGTTTTT.................................................................................... 22 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
...............................................AGAGTGAGTAGTAGATCGAAT...................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CTGGACAAATCAATAAAGGCC........ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................GCGCGGGTAAAGGCGGGAGTA............................................................................................................ 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................AGAGTGAGTGGTGGATCGA........................................................................................................................................................................................ 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................ATACATCTATTTGTGCGC............................................................................................................................. 18 1 10 0.30 3 0 3 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GCGCGGGTAAACGCGGGAGT............................................................................................................. 20 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CGCGGGTAAGGGCGGGAGT............................................................................................................. 19 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CGCGGGTAATGGCGGGAGT............................................................................................................. 19 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................GAAGGATGGAGAGCGAGTA................................................................................................................................................................................................. 19 3 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 2
..........................................................................................................................CTCGGGTAAAGGCGGGAGT............................................................................................................. 19 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CGCGGGTAACGGCGGGAGT............................................................................................................. 19 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................GGAAACGCGGAAGTCAGC......................................................................................................... 18 2 12 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CGCGGGTAAACGCGGGAGT............................................................................................................. 19 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TTTGGAGCTTGAGCCAAAAC....................................................... 20 3 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0
.....AAATCTCCAGTGGAACA.................................................................................................................................................................................................................................... 17 2 16 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................AAACGCGGAAGTCAG.......................................................................................................... 15 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................GCGGGGAGAGGCGGA................................................................................................................ 15 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GCGCGGGTAACGGCGGGA............................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GAGGTTTTATAGGTCACGTTGTCGTCTGCTTGAAGAGCCGTCCTAACTCTCACTCATCATCTAGCTTAATTTGTTTAATTTATTAGGGTTTGTAACATGTATACATGTATGTAAATAAACACGCGCCCCTTTCCGCCTTCAGTCTCTTGAACCGAAGGACCAAAAAGTAAATGGAAAACCGCGAAGGCGGTTTTGTGAATTTGCGAGTGAATTTTGGCGAAGACCTGTTTAGTTATTTCCGGTTCATAGC
**************************************************.......((((((......................(((......(((((....)))))((((......))))...)))((((((((((((((((.....)))))))))..))))))))))))).((((((((....))))))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
...................................................................................................................................TCCGCCTTCAGTCTCTTGAAC.................................................................................................. 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
...................TGTCGTCTGCTTGAAGAGCCG.................................................................................................................................................................................................................. 21 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................................CGCCTTCAGTCTCTTGAACCG................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TTGTGAATTTGCGAGTGGATT..................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......TTATAGGTCACGTTGTCGTCT............................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................AAGGCGGTTTTGTGAATTTGC.............................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................................GCCCCTTTCCGCCTTCAGTCT......................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................ACTCCCACTCATCATCTAGCTT....................................................................................................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.........TAGGTCACGTTGTCGTCTGC............................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...................TGTCGTCTGCTTGAAGAGCCGT................................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................AAACCGCGAAGGCGGTTTTGT...................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TTTGGCGAAGACCTGTTTAGT................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................TGTGAGTTTGCGAGTGAATTT.................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................CCGCCTTCAGTCTCTTGAAC.................................................................................................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...........GGTCACGTTGTCGTCTGCTTG.......................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TTGGCGAAGACCTGTTTAGTT................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.......................GTCTGCTTGGAGAGCCGT................................................................................................................................................................................................................. 18 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0
.......................GTCTGCTAGAAGAGCCGTTGT.............................................................................................................................................................................................................. 21 3 3 0.33 1 0 0 0 0 0 0 0 1 0 0
................................................................................................................................CTTTGCGCCTTCAGTC.......................................................................................................... 16 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0
............................................................................AATTTTTTAGGGTTT............................................................................................................................................................... 15 1 20 0.15 3 0 0 0 0 1 0 0 2 0 0
...........................................................................................................................................................................TGGAAACCCGCGGAGGC.............................................................. 17 2 8 0.13 1 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................................GGCGACGACCTGTTTAGTCG............... 20 3 12 0.08 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................CCTTTGCGCCTTCAGTCG......................................................................................................... 18 2 12 0.08 1 0 1 0 0 0 0 0 0 0 0
.........................................CCTAACTCCCACTCATAAG.............................................................................................................................................................................................. 19 3 15 0.07 1 0 0 0 0 0 0 0 0 1 0
..............................................................AGCTTAATTTGTGTA............................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................................................................AATTTGCGAGTGTAGT..................................... 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................GGTGTTGTGATTTTGCG............................................. 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:12357710-12357959 - dsi_1539 CTCCAAAA-TATCC--------AG--TG-CAA--CAGCAGACGAACTTC--T-CGGCAGGATTGAGAGTGAGTAGT-----------AG--ATCGAAT----------------------------TAAA------C----------------------------AAATTAAATAATCCCA--AACATTGTACATATGTACATACATTTATTTG------------------------------------------------------------TGCGC------------------GGGGAAAGGCGGAAGTCAGA----------------GAA-CTTGGCTTCCTGGTTTTTCATTTA----CCTTTTG---------GCGCTTCCGCCAAAACAC---------------TTA-----AACGCTCACTTAAAACCGCTTCTGGACAAATCAATAAA-GGCCAAGTATCG------------
droSec2 scaffold_0:13188907-13189156 - CTCCAAAA-TATCC--------AG--TG-CAA--CAGCAGACGAACTTC--T-CGGCAGGATTGAGAGTGAGTAGT-----------AG--ATCGAAT----------------------------TAAA------C----------------------------AAATTAAATAATCCCA--AACATTGTACATATGTACATACATTTATTTG------------------------------------------------------------TGCGC------------------GGGGAAAGGCGGAAGTCAGA----------------GAA-CTTGGCTTCCTGGTTTTTCATTTA----CCTTTTG---------GCGCTTCCGCCAAAACAC---------------TTA-----AACGCTCACTTAAAACCGCTTCTGGACAAATCAATAAA-GGCCAAGTGTCG------------
dm3 chr3R:8807060-8807306 + CTCCAAAA-TATCC--------AG--TG-CAA--CAGCGGACGAACTTC--T-CGGCAGGATTGAGAGTGAGTAGA-T--C-------------GGAT----------------------------TAAA------C----------------------------AAATTAAATAATCCCA--AACATTGTACATATGTATATACATTTATTTG------------------------------------------------------------TGCGC------------------GGGGAAAGGCGGAAGTCAGA----------------GAA-CTTGGCTTCCTGGTTTTTCATTTA----CCTTTTG---------GCGCTTCCGCCAAAACAC---------------TTA-----AACGTTCACTTAAAACCGCTTCTGGACAAATCAATAAA-GGCCAAGTGTCG------------
droEre2 scaffold_4770:12841858-12842113 - CTCCAAAC-TATCC--------AG--TG-CAA--CTGCGAACGAACTTC--T-CGGCAGGATTGAGAGTGAGTAGA-A--CG-A---------------------------------------T-TG---ACTTG-------------GCATCCAAT--GATGCTAAATTAAATAATCCCA--AACA-------TATGCGTGTACATATATTTG------------------------------------------------------------TGCGC------------------GGGGAAAGGCGGAAGTCAGA----------------GAA-CTTGGCTTCCTGGTTTTTCATTTA----CCTTTTG---------GCACTTCCGCCAAAACAC---------------TTA-----ATCGCTCACTTAAAGCCGCTTCTGGACAAATCAATAAA-GGTTAAGTGTCT------------
droYak3 3R:13100996-13101254 + CTCCAAAC-TATCC--------AC--TG-CAA--CTGCGGACGAACTTC--T-CGACAGGATTGAGAGTAAGTAGA-C--CG-A---------------------------------------T-GG---GCTTG-------------GGATGGAAT--GATGCTAAATTAAAGCATCCCA---ACAT---GCATATGTGCATATATACATATG------------------------------------------------------------TGCGC------------------GGGGAAAGGCGGAAGTCAGA----------------GAA-CTTGGCTTCCTGGTTTTTCATTTA----CCTTTTG---------GCACTTCCGCCAAAACAC---------------TTA-----ATCGCTCACTTAAAACCGCTTCTGGACAAATCAATAAA-GGCCAAGTGTCT------------
droEug1 scf7180000409802:1221710-1221970 - CTCCAAAA-TATCA--------AG--TG-GAA---ATCGGAAAAGCATC--T-GGACGGGATTGGAAGTGAGTACGGGA-CG-A-TCA-------GAT-CGAA----------------GGGTTTCGAAATATAGC-------------AAACGAAT--TATTAACAATTTAATTATCTAA--ATCTGAG---------------------AGG------------------------------------------------------------CGCAC------------------GGGGAAAGGCGGAAGTCAGA----------------GAA-CTTGGCTTCCTGGTTTTTCATTTG----CCTTTTG---------GCGCTTCCGCCAAAACAT---------------TTA-----AACGCTCACGTAAAACCGCTTCTTGACAAATCAATAAA-GGCCAAGTGTCG------------
droBia1 scf7180000299102:1149019-1149270 - CTCCAAAA-CACCA--------AG--TG-GAA---ATCGCCCAGGCTTC--T-CGACGGGATTGGAAGTGAGTAGA-T--G--A-GGA-------GAT-CGAA----------------AGGAT-CG---CCTGG-------------GCATGAAGTGATCTTGCAAATTAAGTAATCCCA--CACG-------------------------AG------------------------------------------------------------CGCGC------------------GGGGAAAGGCGGAAGTCGGA----------------GAA-CTTGGCTTCCTGGTTTTTCATTTG----CCTTTTG---------GCGCTTCCGCCAAAACAC---------------TTA-----AACGCTCACTTAAAGCCGCTTCTTGACAAATCAATAAA-GGCCAACTGTCG------------
droTak1 scf7180000415653:61557-61814 - CTCCAAGC-AACCA--------AG--TG-GAAATCATCGGACAAGCTTC--T-CGACGGGATTGGAAGTGAGTAGA-T--CG-A-TC-------GGAT-CGAA----------------GGGAT-CG---TATCGG------------GAACAAAATCATCTCGAAAATTAAATAATCCCA--TACGCCG-------------------------------------------------------------------------------------ACGC-----------------GGGGGAAAGGCGGAAGTCAGA----------------GAA-CTTGGCTTCCTGGTTTTTCATTTG----TCTTTTG---------GCGCTTCCGCCAAAACAC---------------TTA-----AACGCTCACTTAAAACCGCTTCTTGACAAATCAATAAA-TGCCAACTGTCG------------
droEle1 scf7180000491008:1436234-1436481 - CTCCAAAA-CATAA--------GG--TG-GAA--ATTCGGACAAGCTTC--T-CGACGCGATTGGAAGTGAGTAGA-T--C------A-------GAT-CGAA----------------GGGAT-CG---TTTCG-------------GAATCGGGT--TGTACGAAGTTAAATAATCACCACAACAC---GA----------------------------------------------------------------------------------ATAC------------------AGGGAAAGGCGGAAGTCTGA----------------GAA-CTTGGCTTCCTGGTTTTTCATTTG----CCTTTTG---------ACGCTTCCGCCAAAACAC---------------TTA------ACGCTCACT-AAAACCGCTTCTTGACAAATCAATAAA-GGCCAAGTGTCG------------
droRho1 scf7180000778054:17739-17996 - CTCCAAAA-TATAA--------GG--TG-GAA--AATCGGACAAGCTTC--T-CGACGCGATTGGAAGTAAGTAGA-T--CAGT-TC-------GGAC-CGAA----------------AGGAT-CG---AATCG-------------TAATCGGGT--AATCTGAAGTTAAATAAACATA--TGCAGAAAACAT--------------------------------------------------------------------------------ATGC------------------AGGGAAAGGCGGAAGTCTGA----------------GAA-CTTGGCTTCCTGGTTTTTCATTTG----CCTTTTG---------CCGCTTCCGCCAAAACAC---------------TTA-----AACGTTCACTTAAAACCGCTTCTTGACAAATCAATAAA-GGCCAAGTGTCG------------
droFic1 scf7180000453800:1267712-1267966 + CTCCAAAA-TATAA--------AG--CG-GAA---ATTGGACAAGCTTC--C-CGACGGGATTGGATGTGAGTAGA-T--G-------------GGAT-CTAC----------------AGGAT-CG---CCCCT-------------GAGTCGCGA--TATTCATACTAAAATAATCA-----------------------TCCACACAAATA------------------------------------------------------------TGCTCAGA--------------GGGGGAAAGGCGGAAGTCAGA----------------GAA-CTTGGCTTCCTGGTTTTTCATTTG----ACTTTTG---------GCGCTTCCGCCAAAACAC---------------TTA-----AACGTTCACTTAAAACCGCTTCTTGACAAATCAATAAA-GGCCAAGTGTCG------------
droKik1 scf7180000302778:538712-538967 - CTTCAAAA-TACTA--------AC--TG-GAA---ATCGGACAAACTTCTCT-CGACGATATTGGCAGTGAGTAAA-A-------TTC-------GAT-CGCA----------------GG------AGA--------------------------------------------------------------------TATAGACGTTCGATC------------------GG---CGAAGGAAC-------------CC------------G-GGGGCAGAGGAA----GAGGAA---GGAAAGGCGGAAATCAGA----------------AG----CAGCTTCCTGGTTATTCGTTTG----CCTTTTG---------GCGCTTCCGCAAAAGCACGAGCACAACAACTCTTTAGTGCTGCCGTCTAATTAAAATTGCTTCTTGACAAATCGATAA--------GTGTCG------------
droAna3 scaffold_13340:9366192-9366523 - TTCCAAAAATATAAATACATATTCACGGGCTA--ATTCGGACAAGCTTC--T-CGACGGATTTGAATGTGAGTAGA-GAG---TACCAGAAGTGCAAT----------------------------TAAA------T----------------------------AAAAGGAATAATA------ACA-------TATTCGACTACATGCCATTGTAACTAATCGGGAGATCGG---CGAAGAAGCGATCGCACTAGTCCCGAGATAGAAGATG-AGGGCAAAGAGGGTGGCGGGAA---GGAAAGGCGGAAGTCAGA------------AGTCGAA-CGAAGCTTCCTGATT--GCATTCG----CCTTTTA---------G--CTTCCGCCACAGCAC---------------TTG--G--CTGGTTCACTTAAACCAGCTTCTTGACAAATCAATAAG-CGCCAAGTATCG------------
droBip1 scf7180000396712:2986715-2987069 - TTCCAAAAATATTAATATATTTTCGTTGGCAA--AATTGGACAAGCTTC--T-CGACGGAATTGAATGTGAGTAGA-GAG---TACCAGAAGTGCATT----------------------------GAAA------T----------------------------AAAAGAAATAAT------AACATATTGCATATGTACATACATGCTGTGGCAACTAACCGGGAGATCGTTCACAGAGAAGCGATCACACTAGTAGCCAGATAGAAGATGGACGGCAAAGAGGGTGGCGGGAA---GGAAAGGCGGAAGTCAGA------------AGTCGAA-CGAAGCTTCCTGATT--GCATTTG----CCTTTTA---------A--CTTCCGCCACAGCAC---------------TTG--G--CTGGTTCACTTAAACCAGCTTCTTGACAAATCAATAAA-TGCCAAGCATCGTACAACAGCAGC
dp5 2:11364475-11364763 - CATCTACA-TATTT--------TGTTTG-GCA---ATTGAGC--GCTCC--TTCAGC--ATTTACAAGTGAGTAGT-A--CG-A---------C--ATGCGAAATAGTTGGCCGTCAGCAGGAT-CA---------AAAAAGC----------------------AGAGCCAGTAGTTTC-------------TGATGAACATCGGTGTTTTTG------------------------------------------------------------TGCGCAGTGGAGACGGGGGAAA---AGAAAGGCGGAAATCAGA----------------C---GCTCGCTTCCTGATTAT--ATTCGCCAGCCTGCTTCCTGTGTCAGCACTTCCGCGACACTGG---------------GCT-----GTCGTTTACTCTAAACTGCTTCTTGACAAATCAATAAACGGTCAAGAGTC-------------
droPer2 scaffold_0:9153916-9154210 + CACCTACA-TATTT--------TGTTTG-GCA---ATTAAGC--GCTCC--TTCAGC--ATTTACAAGTGAGTAGT-A--CG-A---------C--ATGCGAAAAAGTTGGCCGTCAGCAGGAT-CA---------AAAAAGC----------------------AGAGCCAGTAGTTTC-------------TGATGAACATCGGTGTTTTTG------------------------------------------------------------TGCGCAGTGGAGA-GGGGGAAA---AGAAAGGCGGAAATCAGA------------ATTCAGACGCTCGCTTCCTGATTAT--ATTCGCCTGCTTGCTGCCTGTGTCAGCACTTCCGCGACACTGG---------------GCT-----GTCGTTTACTCTAAACTGCTTCTTGACAAATCAATAAACGGCCAAGAGTC-------------
droVir3 scaffold_12855:4005903-4006117 - GTACAAAA-AATGA--------A------------------TCAACTCT--T-GC----------------------------------------GCC----------------------------CAAA------AAAAAGCAACAACCATCAGTTGCTTTAACTATTTAGTTAATTT----------------TTATAAATACACTGTTTTG------------------------------------------------------------CGTGC------------------ATCGAAAGGCGGAAACATAAGGCAGGTGGTGCAGC-T---AAACGTTTCCTGATTTGTAATTGC-GGGCTTTTTA---------GCATTTCCTCAAA----C---------------TG--------------------AATGCTTCTTGACAAATCAATAAA-CGCTAA------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CTCCAAAA-TATCC--------AG--TG-CAA--CAGCAGACGAACTTC--T-CGGCAGGATTGAGAGTGAGTAGT-----------AG--ATCGAAT----------------------------TAAA------C----------------------------AAATTAAATAATCCCA--AACATTGTACATATGTACATACATTTATTTG------------------------------------------------------------TGCGC------------------GGGGAAAGGCGGAAGTCAGA----------------GAA-CTTGGCTTCCTGGTTTTTCATTTA----CCTTTTG---------GCGCTTCCGCCAAAACAC---------------TTA-----AACGCTCACTTAAAACCGCTTCTGGACAAATCAATAAA-GGCCAAGTATCG------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................TGAGAGTGAGTAGT-----------AG--ATCG......................................................................................................................................................................................................................................................................................................................................................................................................2011.00100001000000000000
.........................................................................................................................................................................................................................................................................................................................CAGA----------------GAA-CTTGGCTTCCTGGT......................................................................................................................................2111.00100000000001000000
............................................................................................................................................................................................................................................................................................................GAAAGGCGGAAGTCAGA----------------GAA-CTT.................................................................................................................................................2311.00100100000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTGGACAAATCAATAAA-G.......................2111.00100000010000000000
................................................................AGAGTGAGTAGT-----------AG--ATCGAAT----------------------------.......................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGACAAATCAATAAA-GGCC....................2111.00110000000000000000
droSec2
CTCCAAAA-TATCC--------AG--TG-CAA--CAGCAGACGAACTTC--T-CGGCAGGATTGAGAGTGAGTAGT-----------AG--ATCGAAT----------------------------TAAA------C----------------------------AAATTAAATAATCCCA--AACATTGTACATATGTACATACATTTATTTG------------------------------------------------------------TGCGC------------------GGGGAAAGGCGGAAGTCAGA----------------GAA-CTTGGCTTCCTGGTTTTTCATTTA----CCTTTTG---------GCGCTTCCGCCAAAACAC---------------TTA-----AACGCTCACTTAAAACCGCTTCTGGACAAATCAATAAA-GGCCAAGTGTCG------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................................................................................................................................AGA----------------GAA-CTTGGCTTCCTGGTT.....................................................................................................................................2111.0011000
.....................................CAGACGAACTTC--T-CGGCAGGATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
dm3
CTCCAAAA-TATCC--------AG--TG-CAA--CAGCGGACGAACTTC--T-CGGCAGGATTGAGAGTGAGTAGA-T--C-------------GGAT----------------------------TAAA------C----------------------------AAATTAAATAATCCCA--AACATTGTACATATGTATATACATTTATTTG------------------------------------------------------------TGCGC------------------GGGGAAAGGCGGAAGTCAGA----------------GAA-CTTGGCTTCCTGGTTTTTCATTTA----CCTTTTG---------GCGCTTCCGCCAAAACAC---------------TTA-----AACGTTCACTTAAAACCGCTTCTGGACAAATCAATAAA-GGCCAAGTGTCG------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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...............................A--CAGCGGACGAACTTC--T-CGGCAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TCC--------AG--TG-CAA--CAGCGGACGAACTTC--..................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
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.........................................CGAACTTC--T-CGGCAGGATTGAGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TG-CAA--CAGCGGACGAACTTC--T-................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
...................................AGCGGACGAACTTC--T-CGGCAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................TC--T-CGGCAGGATTGAGACC................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.........................................CGAACTTC--T-CGGCAGGATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
...............................A--CAGCGGACGAACTTC--T-CGGCAGGATT......................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................CAGCGGACGAACTTC--T-CGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................A--CAGCGGACGAACTTC--T-CGGCAGGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
...........TCC--------AG--TG-CAA--CAGCGGACGAACTTC--T-C...............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACAAATCAATAAA-GGCCA...................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
..........................................GAACTTC--T-CGGCAGGATTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................A--CAGCGGACGAACTTC--T-CGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............CC--------AG--TG-CAA--CAGCGGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................A------C----------------------------AAATTAAATAATCCCA--AAC...........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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....................................GCGGACGAACTTC--T-CGGCAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................TTG------------------------------------------------------------TGCGC------------------GGGGAAAGGC..................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
.......................................GACGAACTTC--T-CGGCAGGATTGAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................AACTTC--T-CGGCAGGATTGAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................A------C----------------------------AAATTAAATAATCCCA--AACA..........................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................AACTTC--T-CGGCAGGATTGAGATC................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................ACGAACTTC--T-CGGCAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................G--TG-CAA--CAGCGGACGAACTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.............................................................TTGAGAGTGAGTAGA-T--C-------------GGAT----------------------------T......................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
.........TATCC--------AG--TG-CAA--CAGCGGACGAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........................G-CAA--CAGCGGACGAACTTC--T-................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...........................................AACTTC--T-CGGCAGGATTGA....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
........................................ACGAACTTC--T-CGGCAGGATTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................GACGAACTTC--T-CGGCAGGATTGAGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................AA--CAGCGGACGAACTTC--T-CGGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTGGACAAATCAATAAA-GGCCAA..................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................AACTTC--T-CGGCAGGATTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................AG--TG-CAA--CAGCGGACGAACTTC--T-CG..............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............C--------AG--TG-CAA--CAGCGGACGAACTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...............................A--CAGCGGACGAACTTC--T-CGGCAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................AACTTC--T-CGGCAGGATTGAGACC................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..........................TG-CAA--CAGCGGACGAACTTC--T-CGGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................TTC--T-CGGCAGGATTGAGAGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
..................................CAGCGGACGAACTTC--T-CGGCAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....AAAA-TATCC--------AG--TG-CAA--CAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................AA--CAGCGGACGAACTTC--T-CGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........................................GAACTTC--T-CGGCAGGATTGAGACC................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...................................AGCGGACGAACTTC--T-CGGCAGGATTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................CTTC--T-CGGCAGGATTGAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................GGACGAACTTC--T-CGGCAGGATT......................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................AG--TG-CAA--CAGCGGACGAACTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TG-CAA--CAGCGGACGAACTTC--T-CGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.............................................CTTC--T-CGGCAGGATTGAGAGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.........TATCC--------AG--TG-CAA--CAGCGGACGAACTTC--..................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................C--T-CGGCAGGATTGAGAGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................GTCAGA----------------GAA-CTTGGCTTCCTGG.......................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................ATTTG------------------------------------------------------------TGCGC------------------GGGGAAAGGC..................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...................................................T-CGGCAGGATTGAGAGTGAGT............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.......................G--TG-CAA--CAGCGGACGAACTTC--..................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................AGCGGACGAACTTC--T-CGGCAGGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................TTTA----CCTTTTG---------GCGCTTCCGCCAAA..........................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....AAAA-TATCC--------AG--TG-CAA--CA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................CGAACTTC--T-CGGCAGGATTGAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................ATTAAATAATCCCA--AACATTGTACATA.................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................CGGCAGGATTGAGAGTGAGT............................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................TAAATAATCCCA--AACATTGTA.....................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
.........TATCC--------AG--TG-CAA--CAGCGGACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................AG--TG-CAA--CAGCGGACGAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................................CA--AACATTGTACATATGTATA...........................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAATCAATAAA-GGCCAAGT................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...........................G-CAA--CAGCGGACGAACTTC--T-CG..............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
............CC--------AG--TG-CAA--CAGCGGACGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................AACTTC--T-CGGCAGGATTGAGACCA...............................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................TC--T-CGGCAGGATTGAGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.....................................CGGACGAACTTC--T-CGGCAGGATTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................C--T-CGGCAGGATTGAGAGTGAGTAGA-T--C-------------G......................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................G-CAA--CAGCGGACGAACTTC--T-CGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................A-CTTGGCTTCCTGGTTTT...................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................A--CAGCGGACGAACTTC--T-CGGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................CAGCGGACGAACTTC--T-CGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTA-----AACGTTCACTTAAAACCGC............................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................A--CAGCGGACGAACTTC--T-CGGCAGGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................AACTTC--T-CGGCAGGATTGAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................TTC--T-CGGCAGGATTGAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..............................AA--CAGCGGACGAACTTC--T-C...............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................CTTC--T-CGGCAGGATTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.....................................CGGACGAACTTC--T-CGGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CTCCAAAC-TATCC--------AG--TG-CAA--CTGCGAACGAACTTC--T-CGGCAGGATTGAGAGTGAGTAGA-A--CG-A---------------------------------------T-TG---ACTTG-------------GCATCCAAT--GATGCTAAATTAAATAATCCCA--AACA-------TATGCGTGTACATATATTTG------------------------------------------------------------TGCGC------------------GGGGAAAGGCGGAAGTCAGA----------------GAA-CTTGGCTTCCTGGTTTTTCATTTA----CCTTTTG---------GCACTTCCGCCAAAACAC---------------TTA-----ATCGCTCACTTAAAGCCGCTTCTGGACAAATCAATAAA-GGTTAAGTGTCT------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................GAACTTC--T-CGGCAGGATTGAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
.......................G--TG-CAA--CTGCGAACGAACTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
.TCCAAAC-TATCC--------AG--TG-CAA--CTGCGAACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000
......................AG--TG-CAA--CTGCGAACGAACTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
......................AG--TG-CAA--CTGCGAACGAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
...................................TGCGAACGAACTTC--T-CGGCAGGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
..........ATCC--------AG--TG-CAA--CTGCGAACGAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
................................................C--T-CGGCAGGATTGAGACA................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5011000000
droYak3
CTCCAAAC-TATCC--------AC--TG-CAA--CTGCGGACGAACTTC--T-CGACAGGATTGAGAGTAAGTAGA-C--CG-A---------------------------------------T-GG---GCTTG-------------GGATGGAAT--GATGCTAAATTAAAGCATCCCA---ACAT---GCATATGTGCATATATACATATG------------------------------------------------------------TGCGC------------------GGGGAAAGGCGGAAGTCAGA----------------GAA-CTTGGCTTCCTGGTTTTTCATTTA----CCTTTTG---------GCACTTCCGCCAAAACAC---------------TTA-----ATCGCTCACTTAAAACCGCTTCTGGACAAATCAATAAA-GGCCAAGTGTCT------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................AACTTC--T-CGACAGGATTGAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000
CTCCAAAC-TATCC--------AC--TG-CAA--CTGCGGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
...........................G-CAA--CTGCGGACGAACTTC--T-C...............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.TCCAAAC-TATCC--------AC--TG-CAA--CTGCGGACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000
...................................TGCGGACGAACTTC--T-CGACAGGATTGA....................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
....AAAC-TATCC--------AC--TG-CAA--CTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
...........................G-CAA--CTGCGGACGAACTTC--T-................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
...CAAAC-TATCC--------AC--TG-CAA--CTGCGGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCTCACTTAAAACCGCTTCT........................................2311.00100000010000
..CCAAAC-TATCC--------AC--TG-CAA--CTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
..............................................TTC--T-CGACAGGATTGAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
..........................................GAACTTC--T-CGACAGGATTGAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
......................AC--TG-CAA--CTGCGGACGAACTTC--T-CGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
................................................................................................................................................................................................................................................................................................................................................................TTTCATTTA----CCTTTTG---------GCACT...................................................................................................2111.00101000000000
..........................TG-CAA--CTGCGGACGAACTTC--T-................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
droEug1
CTCCAAAA-TATCA--------AG--TG-GAA---ATCGGAAAAGCATC--T-GGACGGGATTGGAAGTGAGTACGGGA-CG-A-TCA-------GAT-CGAA----------------GGGTTTCGAAATATAGC-------------AAACGAAT--TATTAACAATTTAATTATCTAA--ATCTGAG---------------------AGG------------------------------------------------------------CGCAC------------------GGGGAAAGGCGGAAGTCAGA----------------GAA-CTTGGCTTCCTGGTTTTTCATTTG----CCTTTTG---------GCGCTTCCGCCAAAACAT---------------TTA-----AACGCTCACGTAAAACCGCTTCTTGACAAATCAATAAA-GGCCAAGTGTCG------------SizeHit CountTotal NormTotal
No Reads
droBia1
CTCCAAAA-CACCA--------AG--TG-GAA---ATCGCCCAGGCTTC--T-CGACGGGATTGGAAGTGAGTAGA-T--G--A-GGA-------GAT-CGAA----------------AGGAT-CG---CCTGG-------------GCATGAAGTGATCTTGCAAATTAAGTAATCCCA--CACG-------------------------AG------------------------------------------------------------CGCGC------------------GGGGAAAGGCGGAAGTCGGA----------------GAA-CTTGGCTTCCTGGTTTTTCATTTG----CCTTTTG---------GCGCTTCCGCCAAAACAC---------------TTA-----AACGCTCACTTAAAGCCGCTTCTTGACAAATCAATAAA-GGCCAACTGTCG------------SizeHit CountTotal NormTotal
No Reads
droTak1
CTCCAAGC-AACCA--------AG--TG-GAAATCATCGGACAAGCTTC--T-CGACGGGATTGGAAGTGAGTAGA-T--CG-A-TC-------GGAT-CGAA----------------GGGAT-CG---TATCGG------------GAACAAAATCATCTCGAAAATTAAATAATCCCA--TACGCCG-------------------------------------------------------------------------------------ACGC-----------------GGGGGAAAGGCGGAAGTCAGA----------------GAA-CTTGGCTTCCTGGTTTTTCATTTG----TCTTTTG---------GCGCTTCCGCCAAAACAC---------------TTA-----AACGCTCACTTAAAACCGCTTCTTGACAAATCAATAAA-TGCCAACTGTCG------------SizeHit CountTotal NormTotal
No Reads
droEle1
CTCCAAAA-CATAA--------GG--TG-GAA--ATTCGGACAAGCTTC--T-CGACGCGATTGGAAGTGAGTAGA-T--C------A-------GAT-CGAA----------------GGGAT-CG---TTTCG-------------GAATCGGGT--TGTACGAAGTTAAATAATCACCACAACAC---GA----------------------------------------------------------------------------------ATAC------------------AGGGAAAGGCGGAAGTCTGA----------------GAA-CTTGGCTTCCTGGTTTTTCATTTG----CCTTTTG---------ACGCTTCCGCCAAAACAC---------------TTA------ACGCTCACT-AAAACCGCTTCTTGACAAATCAATAAA-GGCCAAGTGTCG------------SizeHit CountTotal NormTotal
No Reads
droRho1
CTCCAAAA-TATAA--------GG--TG-GAA--AATCGGACAAGCTTC--T-CGACGCGATTGGAAGTAAGTAGA-T--CAGT-TC-------GGAC-CGAA----------------AGGAT-CG---AATCG-------------TAATCGGGT--AATCTGAAGTTAAATAAACATA--TGCAGAAAACAT--------------------------------------------------------------------------------ATGC------------------AGGGAAAGGCGGAAGTCTGA----------------GAA-CTTGGCTTCCTGGTTTTTCATTTG----CCTTTTG---------CCGCTTCCGCCAAAACAC---------------TTA-----AACGTTCACTTAAAACCGCTTCTTGACAAATCAATAAA-GGCCAAGTGTCG------------SizeHit CountTotal NormTotal
No Reads
droFic1
CTCCAAAA-TATAA--------AG--CG-GAA---ATTGGACAAGCTTC--C-CGACGGGATTGGATGTGAGTAGA-T--G-------------GGAT-CTAC----------------AGGAT-CG---CCCCT-------------GAGTCGCGA--TATTCATACTAAAATAATCA-----------------------TCCACACAAATA------------------------------------------------------------TGCTCAGA--------------GGGGGAAAGGCGGAAGTCAGA----------------GAA-CTTGGCTTCCTGGTTTTTCATTTG----ACTTTTG---------GCGCTTCCGCCAAAACAC---------------TTA-----AACGTTCACTTAAAACCGCTTCTTGACAAATCAATAAA-GGCCAAGTGTCG------------SizeHit CountTotal NormTotal
No Reads
droKik1
CTTCAAAA-TACTA--------AC--TG-GAA---ATCGGACAAACTTCTCT-CGACGATATTGGCAGTGAGTAAA-A-------TTC-------GAT-CGCA----------------GG------AGA--------------------------------------------------------------------TATAGACGTTCGATC------------------GG---CGAAGGAAC-------------CC------------G-GGGGCAGAGGAA----GAGGAA---GGAAAGGCGGAAATCAGA----------------AG----CAGCTTCCTGGTTATTCGTTTG----CCTTTTG---------GCGCTTCCGCAAAAGCACGAGCACAACAACTCTTTAGTGCTGCCGTCTAATTAAAATTGCTTCTTGACAAATCGATAA--------GTGTCG------------SizeHit CountTotal NormTotal
No Reads
droAna3
TTCCAAAAATATAAATACATATTCACGGGCTA--ATTCGGACAAGCTTC--T-CGACGGATTTGAATGTGAGTAGA-GAG---TACCAGAAGTGCAAT----------------------------TAAA------T----------------------------AAAAGGAATAATA------ACA-------TATTCGACTACATGCCATTGTAACTAATCGGGAGATCGG---CGAAGAAGCGATCGCACTAGTCCCGAGATAGAAGATG-AGGGCAAAGAGGGTGGCGGGAA---GGAAAGGCGGAAGTCAGA------------AGTCGAA-CGAAGCTTCCTGATT--GCATTCG----CCTTTTA---------G--CTTCCGCCACAGCAC---------------TTG--G--CTGGTTCACTTAAACCAGCTTCTTGACAAATCAATAAG-CGCCAAGTATCG------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................GATCGCACTAGTCCCGAGAT............................................................................................................................................................................................................................2014.004000004
...........................................................................................................................................................................................................................................................................................AGGGTGGCGGGAA---GGAAAGG...................................................................................................................................................................................2011.001100000
...............................................................................................................................................................................................................................................................GTCCCGAGATAGAAGATG-AGG................................................................................................................................................................................................................2111.001000010
.............................................................................................................................................................................................................ATGCCATTGTAACTAATCGGG...................................................................................................................................................................................................................................................................2111.001100000
...............TACATATTCACGGGCTA--ATTCGGACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAATCAATAAG-CGCCAAGT................2211.001010000
.................CATATTCACGGGCTA--ATTCGGACAAGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
...............................................................................................................................................................................................................................................................................TG-AGGGCAAAGAGGGTGGCGG................................................................................................................................................................................................2111.001000100
......................................................................................................................................................................................................................................................................................................................AGTCAGA------------AGTCGAA-CGAAGCT.............................................................................................................................................2111.001000010
..................................ATTCGGACAAGCTTC--T-CGACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..............................................................................................................................................................................................................................................................................................................................................................................CTTTTA---------G--CTTCCGCCACAGCAC---------------TTG--G--CT.............................................................2811.001001000
....................ATTCACGGGCTA--ATTCGGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.......................................GACAAGCTTC--T-CGACGGATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.....................................CGGACAAGCTTC--T-CGACGGATTTGAATA.................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
....................ATTCACGGGCTA--ATTCGGACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
droBip1
TTCCAAAAATATTAATATATTTTCGTTGGCAA--AATTGGACAAGCTTC--T-CGACGGAATTGAATGTGAGTAGA-GAG---TACCAGAAGTGCATT----------------------------GAAA------T----------------------------AAAAGAAATAAT------AACATATTGCATATGTACATACATGCTGTGGCAACTAACCGGGAGATCGTTCACAGAGAAGCGATCACACTAGTAGCCAGATAGAAGATGGACGGCAAAGAGGGTGGCGGGAA---GGAAAGGCGGAAGTCAGA------------AGTCGAA-CGAAGCTTCCTGATT--GCATTTG----CCTTTTA---------A--CTTCCGCCACAGCAC---------------TTG--G--CTGGTTCACTTAAACCAGCTTCTTGACAAATCAATAAA-TGCCAAGCATCGTACAACAGCAGCSizeHit CountTotal NormTotal
No Reads
dp5
CATCTACA-TATTT--------TGTTTG-GCA---ATTGAGC--GCTCC--TTCAGC--ATTTACAAGTGAGTAGT-A--CG-A---------C--ATGCGAAATAGTTGGCCGTCAGCAGGAT-CA---------AAAAAGC----------------------AGAGCCAGTAGTTTC-------------TGATGAACATCGGTGTTTTTG------------------------------------------------------------TGCGCAGTGGAGACGGGGGAAA---AGAAAGGCGGAAATCAGA----------------C---GCTCGCTTCCTGATTAT--ATTCGCCAGCCTGCTTCCTGTGTCAGCACTTCCGCGACACTGG---------------GCT-----GTCGTTTACTCTAAACTGCTTCTTGACAAATCAATAAACGGTCAAGAGTC-------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........TTT--------TGTTTG-GCA---ATTGAGC--GC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000020
.........TATTT--------TGTTTG-GCA---ATTGAGC--GCTCC--..................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
...................................ATTGAGC--GCTCC--TTCAGC--ATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010000
......................TGTTTG-GCA---ATTGAGC--GCTCC--..................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000010
.....................................................................................................................................................................................................................G------------------------------------------------------------TGCGCAGTGGAGACGGGGGA...............................................................................................................................................................................................2111.0010100000000
.ATCTACA-TATTT--------TGTTTG-GC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................CTTCCGCGACACTGG---------------GCT-----G..............................................................1911.0010100000000
..........................................................................................................................................................................................................................................................................................GGAGACGGGGGAAA---AGAAA.....................................................................................................................................................................................1911.0010100000000
.......................GTTTG-GCA---ATTGAGC--GCTCC--TTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010000000
......CA-TATTT--------TGTTTG-GCA---ATTGAGC--GCTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010000000
.............................................................................................................................................................................................................................................................................................................................................................................CCTGCTTCCTGTGTCAGCACT...................................................................................................2111.0010100000000
...................................................................................................................................................................................................................TTG------------------------------------------------------------TGCGCAGTGGAGACGG...................................................................................................................................................................................................1911.0010100000000
..............................................................TACAAGTGAGTAGT-A--CG-A---------C--ATGCG................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000010
.................................................................................................................................................................................................................TTTTG------------------------------------------------------------TGCGCAGTGGAGACGG...................................................................................................................................................................................................2111.0010000000010
droPer2
CACCTACA-TATTT--------TGTTTG-GCA---ATTAAGC--GCTCC--TTCAGC--ATTTACAAGTGAGTAGT-A--CG-A---------C--ATGCGAAAAAGTTGGCCGTCAGCAGGAT-CA---------AAAAAGC----------------------AGAGCCAGTAGTTTC-------------TGATGAACATCGGTGTTTTTG------------------------------------------------------------TGCGCAGTGGAGA-GGGGGAAA---AGAAAGGCGGAAATCAGA------------ATTCAGACGCTCGCTTCCTGATTAT--ATTCGCCTGCTTGCTGCCTGTGTCAGCACTTCCGCGACACTGG---------------GCT-----GTCGTTTACTCTAAACTGCTTCTTGACAAATCAATAAACGGCCAAGAGTC-------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................................................................................................................................................................TCAGA------------ATTCAGACGCTCGCTT............................................................................................................................................2111.001000001
.............................................................TTACAAGTGAGTAGT-A--CG-A---------C--.....................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
................................................................................CG-A---------C--ATGCGAAAAAGTTGGCC....................................................................................................................................................................................................................................................................................................................................................................................2111.001000100
droVir3
GTACAAAA-AATGA--------A------------------TCAACTCT--T-GC----------------------------------------GCC----------------------------CAAA------AAAAAGCAACAACCATCAGTTGCTTTAACTATTTAGTTAATTT----------------TTATAAATACACTGTTTTG------------------------------------------------------------CGTGC------------------ATCGAAAGGCGGAAACATAAGGCAGGTGGTGCAGC-T---AAACGTTTCCTGATTTGTAATTGC-GGGCTTTTTA---------GCATTTCCTCAAA----C---------------TG--------------------AATGCTTCTTGACAAATCAATAAA-CGCTAA------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................TTTCCTCAAA----C---------------TG--------------------AATGCT...........................................1911.001000000000000000010000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................CTGATTTGTAATTGC-GGGCTT.....................................................................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTTGACAAATCAATAAA-........................2111.001000000000000001000000000000000000000000000000000000000000000000
.........................................................................................................................................AAAAGCAACAACCATCAGTTG.......................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000001000000000000000000000000000
..........................................................................................................................................................................................................TACACTGTTTTG------------------------------------------------------------CGTGC------------------ATCG........................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................GGTGCAGC-T---AAACGTTTCCTGAT......................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000001

Generated: 05/18/2015 at 05:37 PM