ID:

dsi_15370

 Coordinate:

3l:7871789-7871905 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3l_7871369_7872200_-]; Antisense to intron [3l_7867500_7873906_+]; CDS [3l_7871381_7872200_-]

No Repeatable elements found

Sense Strand Reads

#########################################################################################################################################################################################################################
TAATCATTTACTTCGGAGTCTTTGAGGACGAAAAAGTTCAAAAAAAGGAGGTATTTATCTGTGATATTTTGATCAACTTAATAAAAAAGGATTTGCCCAATTTGAAAAATTTCACCATGAAATTTGTTCTACTGCACAATAACTTGATTAATAAAAATGTGGTCAAGATTCTTTCAGAAATGGAGTCCAGCATCTGCAGTAAGTTTTTATTCATAGC
**************************************************.................((((((((..(((.(((..(((...(((..((....(((((((((((...)))))))).)))...))..)))...)))..))).))).....))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
..........CTTCGGACTCTTTGATGA............................................................................................................................................................................................. 18 2 3 112.67 338 157 139 16 7 12 5 2 0 0 0 0
..........CTTCGGACTCTTTGATGAT............................................................................................................................................................................................ 19 3 20 3.90 78 39 15 6 5 0 8 2 0 0 1 2
..........CTTCGGACTCTTTGA................................................................................................................................................................................................ 15 1 16 2.38 38 0 0 13 20 0 0 4 0 1 0 0
.........TCTTCGGACTCTTTGATGA............................................................................................................................................................................................. 19 3 20 2.30 46 17 18 5 0 4 1 0 0 1 0 0
............................CGAAAAAGTTCAAAAAAAGGA........................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..........CTTCGGACTCTTTGATGAC............................................................................................................................................................................................ 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........TTCGGACTCTTTGATGAC............................................................................................................................................................................................ 18 2 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0
..............................AAAAAGTTCAAAAAAA........................................................................................................................................................................... 16 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................TAGATTCTTTCTGAAATGGTG................................ 21 3 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0
.........TCTTCGGACTCTTTGAGG.............................................................................................................................................................................................. 18 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
...........TTCGGACTCTTTGATGA............................................................................................................................................................................................. 17 2 18 0.17 3 0 0 0 0 0 0 2 0 1 0 0
..............................AAAAAGTTCAAAAAA............................................................................................................................................................................ 15 0 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0
..........CTTCGGACTCTTTGATGATG........................................................................................................................................................................................... 20 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0
..........CTTCGGATTCTTTGATGA............................................................................................................................................................................................. 18 2 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0
.........TCTTCGGACTCTTTGATGAC............................................................................................................................................................................................ 20 3 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GGAGTCCAACATGTGCA................... 17 2 19 0.05 1 0 0 0 0 0 0 0 0 0 1 0
............................................AAGGAGGTATTTATT.............................................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................CATTTCACCATGAAA............................................................................................... 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

ATTAGTAAATGAAGCCTCAGAAACTCCTGCTTTTTCAAGTTTTTTTCCTCCATAAATAGACACTATAAAACTAGTTGAATTATTTTTTCCTAAACGGGTTAAACTTTTTAAAGTGGTACTTTAAACAAGATGACGTGTTATTGAACTAATTATTTTTACACCAGTTCTAAGAAAGTCTTTACCTCAGGTCGTAGACGTCATTCAAAAATAAGTATCG
**************************************************.................((((((((..(((.(((..(((...(((..((....(((((((((((...)))))))).)))...))..)))...)))..))).))).....))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
...................................................................................................................GTACTTTAAACAAGATGACGT................................................................................. 21 0 1 1.00 1 1 0 0 0 0
...................................................................AAACTAGTTGAATTG....................................................................................................................................... 15 1 20 0.10 2 0 1 0 0 1
........................................................................................................................................................................ATGAAAGTCTTCACCTC................................ 17 2 14 0.07 1 0 1 0 0 0
.........................................TTTTTCCTCCATAAG................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 1 0
.....................................................................................................................................CTTGGTATGGAACTAATTA................................................................. 19 3 20 0.05 1 0 0 1 0 0

Generated: 04/24/2015 at 10:30 AM