ID:

dsi_15367

 Coordinate:

x:8467457-8467606 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.7 -4.5 -4.1

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ACAATATCACAATATCAGTAAATCAGTAATCCGAAAAACAAGAACGTAATTTTAACATTGCAAATTTCTCCTTTCTATGCCAATCGAACAAAACAAAAAAACAAAAACCTACAAAATGGATAATGTCTTGTAAATAACTGAAACGAACAAATATCAAATCAAATCAACATTCCACGAAACTCAAATGCGATGCCGCTTAGGTCAAGAGCGTTTTATGCATCTGGAGAAGCAGACCCGGATCTAAGTGGAG
***********************************************************************.............................................((((..((((..((........(((............)))........))))))))))............(((....)))****************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
.........................................................................................................................................................................TTCCACGAAACTCAAATGCGATGCCGC...................................................... 27 0 1 2.00 2 1 1 0 0 0 0 0 0
...................................................................................................................................................................TCAACATTCCACGAAACTCAAATGCGA............................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................TGAACCGAACAAATATCAAATCAAATC..................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................TGTAAATAACTGAACCGAACAAATA................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0 0
.......................CAGTAATCCGAAAAACAAGAACGT........................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................TAGGTCAAGAGCGTTTTATGCATCTGGAGA....................... 30 0 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................TAGGTCAAGAGCGTTTTATGCATCTGGA......................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0
.......................................................................TTTCTATGCCAATCGAACAAAACAAAAAA...................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................AAAACCTACAAAATGGATAATGTCTT......................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0
...............................CGAAAAACAAGAACGTAATTT...................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................TAGGTCAAGAGCGTTTTATGCAT.............................. 23 0 1 1.00 1 0 0 0 0 1 0 0 0
....................................................................................................ATAATAACCTAAAAAATGGAT................................................................................................................................. 21 3 15 0.33 5 0 5 0 0 0 0 0 0
...................................................................................TCTGACAAAACAAAAAGACAAAA................................................................................................................................................ 23 3 7 0.14 1 0 0 0 1 0 0 0 0
............................................................................................................................................................................................CATACCGCTTGGGTCAAGA........................................... 19 3 8 0.13 1 0 0 0 0 0 0 1 0
....................................................................................................ATAATAACCTAAAAAATGGATA................................................................................................................................ 22 3 10 0.10 1 0 1 0 0 0 0 0 0
................................................................................................................AAAATTGATGATGGCTTGTAA..................................................................................................................... 21 3 14 0.07 1 0 0 0 0 1 0 0 0
...........................................................................TATGGCAAGGGAACAAAACA........................................................................................................................................................... 20 3 15 0.07 1 0 0 0 0 0 0 0 1
......................................................................................................................................................................................................................ATGCATCTGGAGAGG..................... 15 1 17 0.06 1 1 0 0 0 0 0 0 0
............................................................................................ACAAAAAAACAAAAA............................................................................................................................................... 15 0 20 0.05 1 0 0 0 0 1 0 0 0

Anti-sense strand reads

TGTTATAGTGTTATAGTCATTTAGTCATTAGGCTTTTTGTTCTTGCATTAAAATTGTAACGTTTAAAGAGGAAAGATACGGTTAGCTTGTTTTGTTTTTTTGTTTTTGGATGTTTTACCTATTACAGAACATTTATTGACTTTGCTTGTTTATAGTTTAGTTTAGTTGTAAGGTGCTTTGAGTTTACGCTACGGCGAATCCAGTTCTCGCAAAATACGTAGACCTCTTCGTCTGGGCCTAGATTCACCTC
******************************************************.............................................((((..((((..((........(((............)))........))))))))))............(((....)))*********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 O002
Head
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
..................................................................................................................................................................................TGAGTTTACGCTACGGCGAATCCAGT.............................................. 26 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................TGTTTTTGGATGTTTTACC................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0
......AGTTTTAAAGTCATTTCGTCATT............................................................................................................................................................................................................................. 23 3 2 0.50 1 0 1 0 0 0 0
..........................................................................................................TGGATTTTTTACCTATAATAG........................................................................................................................... 21 3 11 0.36 4 0 2 0 0 2 0
........................................................................................................................................................TCGGTTAGTTTAGATGTAAGGT............................................................................ 22 3 4 0.25 1 0 0 0 1 0 0
........................................................................................GTATTGTTTTTTTGATTTAGGAT........................................................................................................................................... 23 3 5 0.20 1 0 1 0 0 0 0
........................................................................................................................................................TAGATTAGTTTAGATGTAAAGT............................................................................ 22 3 7 0.14 1 0 0 0 1 0 0
.......................................................................................................................................................................GTATGGTGCTTCGAGTT.................................................................. 17 2 7 0.14 1 1 0 0 0 0 0
...................TTAAGTCATTAGGCTATT..................................................................................................................................................................................................................... 18 2 8 0.13 1 0 0 0 0 0 1
.............................................................................................GTTTGTTTGTTTTTGGA............................................................................................................................................ 17 1 20 0.10 2 0 2 0 0 0 0
.................................................................................................................................................................TTAGTTCTAAGGTGCTA........................................................................ 17 2 12 0.08 1 0 1 0 0 0 0
....................................................................TGGAAAGATTCGGTTAG..................................................................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0
.............................AGGCTTTTTGTTCAT.............................................................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:8467407-8467656 + dsi_15367 ACAA-T----------ATCAC-A---ATATCAGTAAATCAG----------------TAATCC--GA--AA---------------------------------------------AACA-AGAAC--GTAATTTTAA---------CATTGC----AAATTTCTCCTTTCTATGCCAATCGA--ACAAAA---------CA-----AAAAAACAAAA----------------------------------------------------------------ACCTA-----CAAAATGGAT--A----ATGTCTTGT--AAATAACTGAAACGA--------------ACAAA---------------TA-------------------------------------------------------------------T------CAA---ATCAA-ATCAACATTCCACGAA--A----------CTCAAA-TG----C--GATG-------------------CCGCTTAGGTCAAGAGCGTTTTATGCATCTGGAGAAGCAGACCCGGATCTAA--------GT-----G--------------------------GAG---
droSec2 scaffold_34:281486-281737 + ACAA-T----------ATCAC-A---ATATCAGTAAATCAG----------------TAATCC--GA--AA---------------------------------------------AACA-AGAAC--GTAATTTTAA---------CATTGC----AAATTTCTCCTTTCTATGCCAATCGA--ACAAAA---------CA-----AAAAA---AAA----------------------------------------------------------------ACCTA-----CAAAATGGAT--A----ATGTCTTGT--AAATAACTGAAACGA--------------ACGAAACCAA----------TA-------------------------------------------------------------------T------CAA---ATCAA-ATCAACATTCCACGAA--A----------CTCAAA-TG----C--GATG-------------------CCGCTTAGGTCAAGAGCGTTTTATGCATCTGGAGAAGCAGACCCGGATCTAA--------GT-----G--------------------------GAG---
dm3 chrX:8919002-8919248 + ACAA-T----------ATCAC-A---ATAACAGTAAATC---------------------T--------CA---------------------------------------------AACA-AGAAC--GTAATTTTAA---------CATTGC----AAATTTCTCCTTTCTATGCCAATCGA--ACAAAA---------CAAAACAAA--------A---------------------------------------------------------AATCGA--------AACCAAAATGGAT--A----ATGTCGTGT--AAATAACTGAACCGA--------------ACGAAAACAA----------TA-------------------------------------------------------------------T------CAA---ATCAA-ATCAACATTCCACGAA--A----------CTCAAA-TG----C--GATT-------------------CCGCTTAGGTCAAGAGCGTTTTATGCATCTGGAGAAGCAGACCCGGATCTAA--------GT-----G--------------------------GAG---
droEre2 scaffold_4690:6194569-6194832 - ACCA-G---A--ATATACCAG-A---ATATCAGTAAATCAG----------------TAATCC---A--AA---------------------------------------------AACA-AGAAC--GTAATTTTAA---------CAATGC----AAATTTCTCCTTTCTATGCCAACCAA--ACAAAA---------CG-----AA--------A---------------------------------------------------------AA-----------CTACCAAAATGGATGAA----ATGTCGTGT--GAATAACGGAACCGA----AACAAACCGA---------------------A---------------------TCAAATCAAT------------------------------------T------CAA---TTTAA-ACCAACATTCCACAAA--T----------CTCAAAACG----C--GATT-------------------CCGCTTAGGTCAAGAGCGTTTTATGCATCTGGAGAAGCAGACCCGGATCTAA--------GT-----G--------------------------GAG---
droYak3 X:12393610-12393933 - ACAG-T----------ACCAG-A---ATATCAGTAAATCAG----------------TAATCA--CA--AA---------------------------------------------AACA-AGAAC--GTAATTTTAA---------CATTGC----AAATTTCTCCTTTCTATGCCAACCAA--ACAAAA---------TG-----AAAAAACAAAACTACTACTACTACTACTACTACTACTACTACCAAAATGGTACTACTACCAAATGGATAA-----------CTACCAAAATGGAT--A----ATGTCTTGT--AAATAACCGAATC--------------GAACGAAATCGA----------AT-TC---GTTT-----------------CAAA------------------------------------T-----CGAA---ATCAA-ATGAACATTCCACAAA--A----------CTCAAA-CG----C--GTTG-------------------CCGCTTAGGTCAAGAGCGTTTTATGCATCTGGAGAAGCAGACACGGATCTAA--------GT-----G--------------------------GAG---
droEug1 scf7180000408176:359121-359395 + AAAAACCAGA--------CA-AAAAATAATCAGTAAATCAG----------------TTATTC------CA---------------------------------------------AGCA-AGAAC--GTAATTTTAA---------CAATGC----AAATTTCTCCTTTCTATGCCAACAAAA--A--AC---------TA-C---A--------------------------------------------------------------------------------CAAC-AAACCGGAA--ACTCCTTGTCTTGTGTAAATAAA----AAATCGAAATCGAATCGGAAA-----------------AA---------------------TCAAATGAAA----------------------------AAT-----G------TAAA--ATAAACATGAACATTCCATGAA-------------CTCAAA-----T-CGGAATG----------AA-------CCGCTTAGGTCAAGAGCGTTTCATGCATCTGGAGGTGCAGTCCCGGATCTAA--------GT-----G--------------------------GAGCAT
droBia1 scf7180000301760:2648179-2648458 + ACAG-T----------ACCAG-A---ATATCAGTAAAGCAG----------------TAATCC------AA---------------------------------------------AATA-AGAAC--GTAATTTTAA---------CATTGC----ATATTTCTCCTTTCTATGCCAACAAAA--A-----------------------------------------------------------------------------------------------------CAACCAACACGGAC--A----ATGTCTTGT--AAATAATGCAATCTACCTAAACAATTCGAACGATAACGA----------TA-TCGATGT-CGAAATCG-ATA---------A------------------------------------C------GAA---ATCAA-CTCAACATTCCACAAA-------------CTCACA-----T-CGGGTTTCCGGTTCCGGCT-------TCGCTTAGGTCAAGAGCGTTTCATGCATCTGGAGGTGCAGACCCGCATCTAA--------GT-----G--------------------------GAG---
droTak1 scf7180000415169:1001126-1001431 - ACAA-T----------ACCAA-A---ACATCAGTAAAACAG----------------TAATCC------AA---------------------------------------------AACA-AGAAT--GTACTTTTAA---------CACTGCATAAATATTTCTCCTTTCTATGCCAACAAA--AC--AA---------CC-----AA--------C---------------------------------------------------------AA-----------CAACCAAAATGGAC--A----ATGTCTTGT--AAATAACTCAACTTACCTAATCGAATCAAACAAAA-------------------------------------TCCAAAAAAA-----------------------------ATGGAACT------CAA---ATCAA-ATCAACATTCCGAAAAAAACAAAAAACAACTCACA-----T-TGGGGTTCCGTTTCCGATT-------TTGCACAGGTCAAGAGCGCTTTTTGCATCTGGAGGTGCAGACCCGAGTCTAAAAGCAAAAGA-----G--------------------------GAG---
droEle1 scf7180000491006:2428031-2428318 + AG-T-T-ATCACATAAGCCAG-A---TAATCAGTAAATCAC----------------TTATCC------AA---------------------------------------------ATCA-AGAACAAGTAAATTTAA---------CATTGC----AAATTTCTCCTTTCTATGCCAACAACA--A-CAACAACAACAACA-----AA--AACAAAA----------------------------------------------------------------ACCAA-CAAC-CAAATGGAA--A----ATGTCTTGT--AAATAACTCAAACTACCTAATCAAATCAAACGAAA-------------------------------------TCAAATCAAA------------------------------------T------TAA---ATCAA-ATCAACATTCCACGAA-------------AACACA-----T-C--GGTT-------------------CCGCTTAGGTCAAGAGCGTTTTATGCATCTGGAGGTGCAGACCCGGATCTAA--------GT-----G--------------------------GAG---
droRho1 scf7180000779841:438309-438561 + ACAA-A----------ACCAG-A---ATTTCAGTTAATCGGC---TAAT-----CGGTTATTC------AA---------------------------------------------AAAA-AGAAC--GTCATTTTAA---------CATTGC----AAATTTCTCCTTTCTATGCCAACAACA----AAA---------CA-----A--------------------------------------------------------------------------------CAAC-TAAATGGAA--A----ATGTCTTGT--AAATAACTCAACCTACATAATCAAATCAAACGAA-----------------------------------------------A------------------------------------T------TAA---ATTAA-ATCAACATTCCACGAA-------------AACACA-----T-C--GATT-------------------TCGCTTAGGTCAAGAGCGTTTTATGCATCTGGAGGTGCAGACCCGGATCTAA--------GT-----G--------------------------GAG---
droFic1 scf7180000453829:889748-890007 + ACAA-A----------GCCAG-A---ATATCCGTAAATCCGT---AAAA-----ACGTAATGCAAGA--AA---------------------------------------------AACATAGAAC--TTAATTTTAA---------CATTGC----AAATTTCTCCTTTCTATGCCAACTACGAAC------------------------------------------------------------------------------------------------------AAA-CAAATGGAA--T----ATGTCTTGT--ACATAACGCAACCAACCTAATCAAATCGAACAAAA-------------------------------------TCAAATCAAA------------------------------------T------TAA---ATTAA-ATCTACATTCCACTA---------------------------C--GAAA---------------ACTAAAACTTAGGTCAAGAGCGTTTTATGCATCTGGAGGTGCAGACAAGGATCTAA--------GT-----G--------------------------GAT---
droKik1 scf7180000302698:157654-157943 - C-AG-C----------ATCAT-A---TTATCCATTGGACGGACAGAAAAACGAAACATAATGA--TGGCCA-----------------------------------------------AG-AGAGC--GTAATTTTAA---------TATTTA---CAAATTTCTCCTTTCTATGCCAACACAA--A--AA---------TA--------------------------------------------------------------------------------------TAAA-CACCTGGAA--C----TTCTCTTGT--AAATAATGCAAACAAAACA-ACAACTAAAA----------TCAAAACGAAACTAAATGTTT-----------------GAAA------------------------------------T------TAA---ATCAA-ATCAACATTCCAAAAA--A----------CAAAAAACGCCC-TGGGATTC------------------CCGCTTAGGTCAAGAGCGTTTTATGCATCTGGAGGTGCAGACCAGGATCTAA--------GG-----G--------------------------GGG---
droAna3 scaffold_13047:738091-738341 + ACAA-C----------ACGAA-A---GCG-AAGCGAAGGAG----------------TAA-------------------GCGTAATCTAGGCC---------------------------------------CACTAA---------TCTTGC----GAATTTCTCCTTTCCCTGCAAAATAA--TCAACA---------CC-----CA--------A---------------------------------------------T----ACTGGAT----------------CGACGATGGAC--A----CTACCTTGT--ACATAAACGCC-----------------------------------------------------------------------------------------------------------T------CAAAACCTCAA-AACCACATTCCAAA----------------CCAAA---------------------------------TCGTCCAGGTCAAGAGCGGTTCATGCACCTGGAGGTGCAGACCCGGATCTAA--------GGATCTAAGGACAGACGGATGCACGACGGATGCAGGA---
droBip1 scf7180000396431:525966-526226 + TATCGC-A--------GCCTA-C---ACACCCATAACACGA----------------ACCCC-------CAAGGAGGATGCGTAATCTAGGCC---------------------------------------CACTAA---------TCTTGC----GAATTTCTCCTTTCTCTGCCATCGAA--CC-CAA---------CC-----A--------------------------------------------------------------------------------------CCAC----------------TTTCGATCAACAA----CCATGGAAACGGAAACG-----------------------------------------GCA---------ATGGACACGACTTTGTAAATAAACTGAAACC------T------CAAAACATC-A-ACCAACATTCCACA----------------------------C--GACA-------------------ACGTCCAGGTCAAGAGCGGTTCATGCACCTGGAGGTGCAGACCCGGGTCTAA--------GGA-C--G--------------------------AAG---
dp5 XL_group1e:8195787-8196096 + CCCA-C----------ATGAC-C---CTGCT-TTTAGCGTG----------------TG--------------------------GCTAGGCCCGACTAGACAGATACCCGACCAGATCATTGAAC-ACTGATTTTAA---------CACTGA----CAATTTCTCCTTTCTCTGCCAACGAA--ACCAAA---------CC-----AA--------A---------------------------------------------------------TCTCAC-AACTG-----TGAAACGGAT--A-------TACTCT--CAATCTCTATACTATTCTATTCT------ACAATCTACAATCTACA-----------------------------------ACCT-------------------------------ACTCAAATACAA---ATACA-ACAAACATTCCATCAA--C----------GACGCT-----T-C--GGAC------CTGATCTTAACTGATCCTCAGGTCAGGAGCGTTTCATGCATTTGGAGGTGCAGACCAGAATCTAA--------AA-----G--------------------------GA----
droWil2 scf2_1100000004963:743242-743372 - ATATAAAAAA--------CT-GAA------------------------------------------------------------ACTGAT---------------------------------------TTTTTCTAA---------TCTTGA---TAACTTTCTCCTTTTTCTTCCAACCAAA--A--AA---------CAAAACAAA--------A---------------------------------------------------------AACAAACA-CTGGGA--AAAAAT-TAC-------ACTCTTTGT--AAATAATTGTAA-------------------------------------------------------------------------------------------------------------------A---ATTAA-AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------AT---
droVir3 scaffold_12726:2816569-2816690 + ACAA-C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAA----------------------------TGAACAAACAACTCAACGT-GAATATAAAACA--------TTCCA-------------------------------ATT-----CCAA---ATGCG-ACA-----------A--------------ATGAA------------AC------------T-------TACCCAAGGTCAAGAACGTTTCATGCATTTGGAGCTGCAAACCAGAATTTAA------------------------------------------------
droMoj3 scaffold_6473:5670583-5670742 - AACAAC----------A---------ACAACAACCAACA--------------------ACC-------------------------------------------------------------------------------------------------------------------------------------------------AA--------C---------------------------------------------------------AA----------------------------------------------------------------------------------------CAAACACTCAATGC-GAATATCA-ACA--------TT------------------------------------C------CAA---CTCAA-TTCCAAATGCGACAAA--A----------CTGAAA-CAA-TTC--GCTG----------CT-------GGCCGAAGGTCAAGAGCGTTTCATGCATTTGGAGCTGCAAACCAGAATTTAG--------AC--TTAA--------------------------GAA---
droGri2 scaffold_15203:6414027-6414221 + AAAACAAAAA--------CA-AAA--------------AAA----------------CC-------------------TGCTTGATCAAAAAC---------------------------------------TCCCGATTAACGGAATACTT----------------------------------------------------------------------------------------------------------------------------ACAAACT-CAA--------------------------------------AC---------------------------------TGAAAAAAACACTCAATGC-GAATATCA-ACA--------TTCCA-------------------------------ATTCAATTACAA---ATGCG-ACA-----------A--------------CTGACA-CA--TCC--GCTG----------CT-------TACCCAAGGTCAAGAGCGTTTTATGCATTCGGAACTGCAAACCAGAATTTAA--------TT-----G--------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ACAA-T----------ATCAC-A---ATATCAGTAAATCAG----------------TAATCC--GA--AA---------------------------------------------AACA-AGAAC--GTAATTTTAA---------CATTGC----AAATTTCTCCTTTCTATGCCAATCGA--ACAAAA---------CA-----AAAAAACAAAA----------------------------------------------------------------ACCTA-----CAAAATGGAT--A----ATGTCTTGT--AAATAACTGAAACGA--------------ACAAA---------------TA-------------------------------------------------------------------T------CAA---ATCAA-ATCAACATTCCACGAA--A----------CTCAAA-TG----C--GATG-------------------CCGCTTAGGTCAAGAGCGTTTTATGCATCTGGAGAAGCAGACCCGGATCTAA--------GT-----G--------------------------GAG---SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCACGAA--A----------CTCAAA-TG----C--GATG-------------------CCGC................................................................................................2712.00200000001100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACATTCCACGAA--A----------CTCAAA-TG----C--GA.........................................................................................................................2711.00100000001000000000
......................................CAG----------------TAATCC--GA--AA---------------------------------------------AACA-AGAAC--GT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGTCAAGAGCGTTTTATGCATCTGGAGA.................................................................3011.00100000000100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGTCAAGAGCGTTTTATGCATCTGGA...................................................................2811.00100000010000000000
.......................................................................................................................................................................TTTCTATGCCAATCGA--ACAAAA---------CA-----AAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000001000000000
.......................................................................................................................................................................................................................AAA----------------------------------------------------------------ACCTA-----CAAAATGGAT--A----ATGTCTT.....................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
..............................................................C--GA--AA---------------------------------------------AACA-AGAAC--GTAATTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGTCAAGAGCGTTTTATGCAT........................................................................2311.00100000000000001000
..............................................................................................................................................................................................A---------CA-----AAAAAACAAAA----------------------------------------------------------------A......................................................................................................................................................................................................................................................................................................................................................15200.05100000000000001000
droSec2
ACAA-T----------ATCAC-A---ATATCAGTAAATCAG----------------TAATCC--GA--AA---------------------------------------------AACA-AGAAC--GTAATTTTAA---------CATTGC----AAATTTCTCCTTTCTATGCCAATCGA--ACAAAA---------CA-----AAAAA---AAA----------------------------------------------------------------ACCTA-----CAAAATGGAT--A----ATGTCTTGT--AAATAACTGAAACGA--------------ACGAAACCAA----------TA-------------------------------------------------------------------T------CAA---ATCAA-ATCAACATTCCACGAA--A----------CTCAAA-TG----C--GATG-------------------CCGCTTAGGTCAAGAGCGTTTTATGCATCTGGAGAAGCAGACCCGGATCTAA--------GT-----G--------------------------GAG---SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TG----C--GATG-------------------CCGCTTAGGT..........................................................................................1811.0011000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGAGAAGCAGACCCGGATCTG.................................................2411.0010001
dm3
ACAA-T----------ATCAC-A---ATAACAGTAAATC---------------------T--------CA---------------------------------------------AACA-AGAAC--GTAATTTTAA---------CATTGC----AAATTTCTCCTTTCTATGCCAATCGA--ACAAAA---------CAAAACAAA--------A---------------------------------------------------------AATCGA--------AACCAAAATGGAT--A----ATGTCGTGT--AAATAACTGAACCGA--------------ACGAAAACAA----------TA-------------------------------------------------------------------T------CAA---ATCAA-ATCAACATTCCACGAA--A----------CTCAAA-TG----C--GATT-------------------CCGCTTAGGTCAAGAGCGTTTTATGCATCTGGAGAAGCAGACCCGGATCTAA--------GT-----G--------------------------GAG---SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAA-TG----C--GATT-------------------CCGCTTAGGTCAAGA.....................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................GTAATTTTAA---------CATTGC----AAATTTCTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TTAA---------CATTGC----AAATTTCTCCTTTCTATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAA-TG----C--GATT-------------------CCGCTTAGGTCAAGA.....................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATT-------------------CCGCTTAGGTCAAGAGC...................................................................................2111.0010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................ATGCCAATCGA--ACAAAA---------C........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGTCAAGAGCGTTTTATGCA.........................................................................2311.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TAACAGTAAATC---------------------T--------CA---------------------------------------------AACA-AGAAC--GTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
............................................................T--------CA---------------------------------------------AACA-AGAAC--GTAATTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACATTCCACGAA--A----------CTCAAA-TG----C--GA.........................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................CA-AGAAC--GTAATTTTAA---------CAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..........................ATAACAGTAAATC---------------------T--------CA---------------------------------------------AA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGCATCTGGAGAAGCAGA...........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGAGCGTTTTATGCATCTGGAGA.................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATGCATCTGGAGAAGC..............................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCGGATCTAA--------GT-----G--------------------------GA....1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCATCTGGAGAAGCAGACCCGGA.....................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATGCATCTGGAGAAGCAGACCCGGA.....................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCACGAA--A----------CTCAAA-TG----C--GATT-------------------CCGC................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----C--GATT-------------------CCGCTTAGGTCA........................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-------------------CCGCTTAGGTCAAGAGC...................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TG----C--GATT-------------------CCGCTTAGGTC.........................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................GAT--A----ATGTCGTGT--AAATAACTGAACCG...................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----C--GATT-------------------CCGCTTAGGTCAAGAGCGTT................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGTTTTATGCATCTGGAGAAGC..............................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........................TAACAGTAAATC---------------------T--------CA---------------------------------------------AACA-AGAAC--GTAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAA-TG----C--GATT-------------------CCGCTTA.............................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACATTCCACGAA--A----------CTCAAA-TG----C--GAT........................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCCGGATCTAA--------GT-----G--------------------------GAG---2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................T--AAATAACTGAACCGA--------------ACGAAAAC............................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................AATGGAT--A----ATGTCGTGT--AAATA............................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTCCACGAA--A----------CTCAAA-TG----..............................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGTCAAGAGCGTTTTATGCATC.......................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGCATCTGGAGAAGCAGACCCGGA.....................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................CCGA--------------ACGAAAACAA----------TA-------------------------------------------------------------------T------C...................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACGAA--A----------CTCAAA-TG----C--GATT-------------------CCGC................................................................................................2611.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................A---------------------------------------------AACA-AGAAC--GTAATTTTAA---------CA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGAGAAGCAGACCCGGATCTAA--------GT-----.................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-TG----C--GATT-------------------CCGCTTAGGTCA........................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCGTTTTATGCATCTGGAGAAGCA.............................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................A--ACAAAA---------CAAAACAAA--------A---------------------------------------------------------AA............................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................AAAA---------CAAAACAAA--------A---------------------------------------------------------AAT...........................................................................................................................................................................................................................................................................................................................................................17200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................ACAAAA---------CAAAACAAA--------A---------------------------------------------------------AA............................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ACCA-G---A--ATATACCAG-A---ATATCAGTAAATCAG----------------TAATCC---A--AA---------------------------------------------AACA-AGAAC--GTAATTTTAA---------CAATGC----AAATTTCTCCTTTCTATGCCAACCAA--ACAAAA---------CG-----AA--------A---------------------------------------------------------AA-----------CTACCAAAATGGATGAA----ATGTCGTGT--GAATAACGGAACCGA----AACAAACCGA---------------------A---------------------TCAAATCAAT------------------------------------T------CAA---TTTAA-ACCAACATTCCACAAA--T----------CTCAAAACG----C--GATT-------------------CCGCTTAGGTCAAGAGCGTTTTATGCATCTGGAGAAGCAGACCCGGATCTAA--------GT-----G--------------------------GAG---SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................A---------------------------------------------AACA-AGAAC--GTAATTTTAA---------CAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000
.......................................................................................................................................TAA---------CAATGC----AAATTTCTCCTTTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
...........................................................................................................................................................................................................................................................................................................................................CCGA----AACAAACCGA---------------------A---------------------TCAAATCAAT------------------------------------...........................................................................................................................................................................................2511.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGACCCGGATCTAA--------GT-----G--------------------------......2011.0010100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGTTTTATGCATCTGGA...................................................................2011.0010000010
droYak3
ACAG-T----------ACCAG-A---ATATCAGTAAATCAG----------------TAATCA--CA--AA---------------------------------------------AACA-AGAAC--GTAATTTTAA---------CATTGC----AAATTTCTCCTTTCTATGCCAACCAA--ACAAAA---------TG-----AAAAAACAAAACTACTACTACTACTACTACTACTACTACTACCAAAATGGTACTACTACCAAATGGATAA-----------CTACCAAAATGGAT--A----ATGTCTTGT--AAATAACCGAATC--------------GAACGAAATCGA----------AT-TC---GTTT-----------------CAAA------------------------------------T-----CGAA---ATCAA-ATGAACATTCCACAAA--A----------CTCAAA-CG----C--GTTG-------------------CCGCTTAGGTCAAGAGCGTTTTATGCATCTGGAGAAGCAGACACGGATCTAA--------GT-----G--------------------------GAG---SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
AAAAACCAGA--------CA-AAAAATAATCAGTAAATCAG----------------TTATTC------CA---------------------------------------------AGCA-AGAAC--GTAATTTTAA---------CAATGC----AAATTTCTCCTTTCTATGCCAACAAAA--A--AC---------TA-C---A--------------------------------------------------------------------------------CAAC-AAACCGGAA--ACTCCTTGTCTTGTGTAAATAAA----AAATCGAAATCGAATCGGAAA-----------------AA---------------------TCAAATGAAA----------------------------AAT-----G------TAAA--ATAAACATGAACATTCCATGAA-------------CTCAAA-----T-CGGAATG----------AA-------CCGCTTAGGTCAAGAGCGTTTCATGCATCTGGAGGTGCAGTCCCGGATCTAA--------GT-----G--------------------------GAGCATSizeHit CountTotal NormTotal
No Reads
droBia1
ACAG-T----------ACCAG-A---ATATCAGTAAAGCAG----------------TAATCC------AA---------------------------------------------AATA-AGAAC--GTAATTTTAA---------CATTGC----ATATTTCTCCTTTCTATGCCAACAAAA--A-----------------------------------------------------------------------------------------------------CAACCAACACGGAC--A----ATGTCTTGT--AAATAATGCAATCTACCTAAACAATTCGAACGATAACGA----------TA-TCGATGT-CGAAATCG-ATA---------A------------------------------------C------GAA---ATCAA-CTCAACATTCCACAAA-------------CTCACA-----T-CGGGTTTCCGGTTCCGGCT-------TCGCTTAGGTCAAGAGCGTTTCATGCATCTGGAGGTGCAGACCCGCATCTAA--------GT-----G--------------------------GAG---SizeHit CountTotal NormTotal
No Reads
droTak1
ACAA-T----------ACCAA-A---ACATCAGTAAAACAG----------------TAATCC------AA---------------------------------------------AACA-AGAAT--GTACTTTTAA---------CACTGCATAAATATTTCTCCTTTCTATGCCAACAAA--AC--AA---------CC-----AA--------C---------------------------------------------------------AA-----------CAACCAAAATGGAC--A----ATGTCTTGT--AAATAACTCAACTTACCTAATCGAATCAAACAAAA-------------------------------------TCCAAAAAAA-----------------------------ATGGAACT------CAA---ATCAA-ATCAACATTCCGAAAAAAACAAAAAACAACTCACA-----T-TGGGGTTCCGTTTCCGATT-------TTGCACAGGTCAAGAGCGCTTTTTGCATCTGGAGGTGCAGACCCGAGTCTAAAAGCAAAAGA-----G--------------------------GAG---SizeHit CountTotal NormTotal
No Reads
droEle1
AG-T-T-ATCACATAAGCCAG-A---TAATCAGTAAATCAC----------------TTATCC------AA---------------------------------------------ATCA-AGAACAAGTAAATTTAA---------CATTGC----AAATTTCTCCTTTCTATGCCAACAACA--A-CAACAACAACAACA-----AA--AACAAAA----------------------------------------------------------------ACCAA-CAAC-CAAATGGAA--A----ATGTCTTGT--AAATAACTCAAACTACCTAATCAAATCAAACGAAA-------------------------------------TCAAATCAAA------------------------------------T------TAA---ATCAA-ATCAACATTCCACGAA-------------AACACA-----T-C--GGTT-------------------CCGCTTAGGTCAAGAGCGTTTTATGCATCTGGAGGTGCAGACCCGGATCTAA--------GT-----G--------------------------GAG---SizeHit CountTotal NormTotal
No Reads
droRho1
ACAA-A----------ACCAG-A---ATTTCAGTTAATCGGC---TAAT-----CGGTTATTC------AA---------------------------------------------AAAA-AGAAC--GTCATTTTAA---------CATTGC----AAATTTCTCCTTTCTATGCCAACAACA----AAA---------CA-----A--------------------------------------------------------------------------------CAAC-TAAATGGAA--A----ATGTCTTGT--AAATAACTCAACCTACATAATCAAATCAAACGAA-----------------------------------------------A------------------------------------T------TAA---ATTAA-ATCAACATTCCACGAA-------------AACACA-----T-C--GATT-------------------TCGCTTAGGTCAAGAGCGTTTTATGCATCTGGAGGTGCAGACCCGGATCTAA--------GT-----G--------------------------GAG---SizeHit CountTotal NormTotal
No Reads
droFic1
ACAA-A----------GCCAG-A---ATATCCGTAAATCCGT---AAAA-----ACGTAATGCAAGA--AA---------------------------------------------AACATAGAAC--TTAATTTTAA---------CATTGC----AAATTTCTCCTTTCTATGCCAACTACGAAC------------------------------------------------------------------------------------------------------AAA-CAAATGGAA--T----ATGTCTTGT--ACATAACGCAACCAACCTAATCAAATCGAACAAAA-------------------------------------TCAAATCAAA------------------------------------T------TAA---ATTAA-ATCTACATTCCACTA---------------------------C--GAAA---------------ACTAAAACTTAGGTCAAGAGCGTTTTATGCATCTGGAGGTGCAGACAAGGATCTAA--------GT-----G--------------------------GAT---SizeHit CountTotal NormTotal
No Reads
droKik1
C-AG-C----------ATCAT-A---TTATCCATTGGACGGACAGAAAAACGAAACATAATGA--TGGCCA-----------------------------------------------AG-AGAGC--GTAATTTTAA---------TATTTA---CAAATTTCTCCTTTCTATGCCAACACAA--A--AA---------TA--------------------------------------------------------------------------------------TAAA-CACCTGGAA--C----TTCTCTTGT--AAATAATGCAAACAAAACA-ACAACTAAAA----------TCAAAACGAAACTAAATGTTT-----------------GAAA------------------------------------T------TAA---ATCAA-ATCAACATTCCAAAAA--A----------CAAAAAACGCCC-TGGGATTC------------------CCGCTTAGGTCAAGAGCGTTTTATGCATCTGGAGGTGCAGACCAGGATCTAA--------GG-----G--------------------------GGG---SizeHit CountTotal NormTotal
No Reads
droAna3
ACAA-C----------ACGAA-A---GCG-AAGCGAAGGAG----------------TAA-------------------GCGTAATCTAGGCC---------------------------------------CACTAA---------TCTTGC----GAATTTCTCCTTTCCCTGCAAAATAA--TCAACA---------CC-----CA--------A---------------------------------------------T----ACTGGAT----------------CGACGATGGAC--A----CTACCTTGT--ACATAAACGCC-----------------------------------------------------------------------------------------------------------T------CAAAACCTCAA-AACCACATTCCAAA----------------CCAAA---------------------------------TCGTCCAGGTCAAGAGCGGTTCATGCACCTGGAGGTGCAGACCCGGATCTAA--------GGATCTAAGGACAGACGGATGCACGACGGATGCAGGA---SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---------------------------------TCGTCCAGGTCAAGAGCGGTT...............................................................................2311.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAGACGGATGCACGACGGATGCA......2611.001000001
droBip1
TATCGC-A--------GCCTA-C---ACACCCATAACACGA----------------ACCCC-------CAAGGAGGATGCGTAATCTAGGCC---------------------------------------CACTAA---------TCTTGC----GAATTTCTCCTTTCTCTGCCATCGAA--CC-CAA---------CC-----A--------------------------------------------------------------------------------------CCAC----------------TTTCGATCAACAA----CCATGGAAACGGAAACG-----------------------------------------GCA---------ATGGACACGACTTTGTAAATAAACTGAAACC------T------CAAAACATC-A-ACCAACATTCCACA----------------------------C--GACA-------------------ACGTCCAGGTCAAGAGCGGTTCATGCACCTGGAGGTGCAGACCCGGGTCTAA--------GGA-C--G--------------------------AAG---SizeHit CountTotal NormTotal
No Reads
dp5
CCCA-C----------ATGAC-C---CTGCT-TTTAGCGTG----------------TG--------------------------GCTAGGCCCGACTAGACAGATACCCGACCAGATCATTGAAC-ACTGATTTTAA---------CACTGA----CAATTTCTCCTTTCTCTGCCAACGAA--ACCAAA---------CC-----AA--------A---------------------------------------------------------TCTCAC-AACTG-----TGAAACGGAT--A-------TACTCT--CAATCTCTATACTATTCTATTCT------ACAATCTACAATCTACA-----------------------------------ACCT-------------------------------ACTCAAATACAA---ATACA-ACAAACATTCCATCAA--C----------GACGCT-----T-C--GGAC------CTGATCTTAACTGATCCTCAGGTCAGGAGCGTTTCATGCATTTGGAGGTGCAGACCAGAATCTAA--------AA-----G--------------------------GA----SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droWil2
ATATAAAAAA--------CT-GAA------------------------------------------------------------ACTGAT---------------------------------------TTTTTCTAA---------TCTTGA---TAACTTTCTCCTTTTTCTTCCAACCAAA--A--AA---------CAAAACAAA--------A---------------------------------------------------------AACAAACA-CTGGGA--AAAAAT-TAC-------ACTCTTTGT--AAATAATTGTAA-------------------------------------------------------------------------------------------------------------------A---ATTAA-AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------AT---SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................TCTAA---------TCTTGA---TAACTTTCTCCTTTTTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000
droVir3
ACAA-C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAA----------------------------TGAACAAACAACTCAACGT-GAATATAAAACA--------TTCCA-------------------------------ATT-----CCAA---ATGCG-ACA-----------A--------------ATGAA------------AC------------T-------TACCCAAGGTCAAGAACGTTTCATGCATTTGGAGCTGCAAACCAGAATTTAA------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACGTTTCATGCATTTGGAGCTGCA.............................................................2711.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGTTTCATGCATTTGGAGC.................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATGCATTTGGAGCTGCA.............................................................2011.001000000000000000000100000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGCATTTGGAGCTGCA.............................................................1911.001000000000000000000010000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA------------AC------------T-------TACCCAAGGTCAAGAACGT.................................................................................2511.001000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCAAGGTCAAGAACGTCAA..............................................................................2120.501000000000000000000000010000000000000000000000000000000000000000
droMoj3
AACAAC----------A---------ACAACAACCAACA--------------------ACC-------------------------------------------------------------------------------------------------------------------------------------------------AA--------C---------------------------------------------------------AA----------------------------------------------------------------------------------------CAAACACTCAATGC-GAATATCA-ACA--------TT------------------------------------C------CAA---CTCAA-TTCCAAATGCGACAAA--A----------CTGAAA-CAA-TTC--GCTG----------CT-------GGCCGAAGGTCAAGAGCGTTTCATGCATTTGGAGCTGCAAACCAGAATTTAG--------AC--TTAA--------------------------GAA---SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................CAACCAACA--------------------ACC-------------------------------------------------------------------------------------------------------------------------------------------------AA--------C---------------------------------------------------------AA----------------------------------------------------------------------------------------CA..................................................................................................................................................................................................................................................................19100.101100000
droGri2
AAAACAAAAA--------CA-AAA--------------AAA----------------CC-------------------TGCTTGATCAAAAAC---------------------------------------TCCCGATTAACGGAATACTT----------------------------------------------------------------------------------------------------------------------------ACAAACT-CAA--------------------------------------AC---------------------------------TGAAAAAAACACTCAATGC-GAATATCA-ACA--------TTCCA-------------------------------ATTCAATTACAA---ATGCG-ACA-----------A--------------CTGACA-CA--TCC--GCTG----------CT-------TACCCAAGGTCAAGAGCGTTTTATGCATTCGGAACTGCAAACCAGAATTTAA--------TT-----G--------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 04:46 PM