dsi_15304

Name	Class	Family	Strand
TART_DV	LINE	Jockey	+

AAAATACAGACAGACCAGCAGCAGCAGCAGCAGCAACAGCAGCAACTGCTAACTGCAACCGCATTTAGCCCAGTTTTCTGAGCAAATATTTTCCAAAAGCTAACGACAAAAAAATCTCACACTAAATCTTAGCGTTATTTTTTCCTCCTCGTCGTTGTCGTCGCGTTTAACTCAAATTATAACAACAACAACGAGAGCAGCATCAACAACAACAACAGCAACATCATCAGCAGCAACAACACAAGTAACA ************************************************..((((......((((.((.(((....))).)))))).................((..(((((((...((.((((...)))).)).)))))))..))(((((.(((((.((...((((.....))))....)).))))).))))).))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	M025 embryo	O002 Head	M023 head	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR902009 testis	SRR553485 Chicharo_3 day-old ovaries
............................................................................................................................................TTTCCTCCTCGTCGTTGTCGTGG.......................................................................................	23	1	1	1.00	1	0	1	0	0	0	0	0	0
.........................................................................................................................................TTTTTTCCTCCTCGTCGTTGTCG..........................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................AGCAGCATCAACAACAAC.....................................	18	0	8	0.88	7	0	0	7	0	0	0	0	0
.........................................................................................................................................................................................................CTCAACAACAACAACAGCAACAT..........................	23	1	3	0.33	1	0	0	0	1	0	0	0	0
......................................................................................................................................TTATTTTCTTCTTCTCGTCGTT..............................................................................................	22	3	7	0.29	2	0	0	0	0	2	0	0	0
AAAATACAGTCCGACGAGCA......................................................................................................................................................................................................................................	20	3	9	0.11	1	0	0	0	0	0	0	1	0
.............................................................................................................................................TGTCTCCACGTCGTTGTCGTC........................................................................................	21	3	9	0.11	1	1	0	0	0	0	0	0	0
....................................................................................................................TCACACTGAATTTTAGCGT...................................................................................................................	19	2	16	0.06	1	0	0	0	0	0	1	0	0
............................................................................................................................................................................................................................ACATCATCAGCAGCA...............	15	0	17	0.06	1	0	0	0	0	0	1	0	0
............................AGCAGCAACAGCAGCA..............................................................................................................................................................................................................	16	0	20	0.05	1	0	0	0	0	0	0	0	1
....................................................................................................................................................................................................................................AGCAGCAACAACACA.......	15	0	20	0.05	1	0	0	0	0	0	1	0	0

TTTTATGTCTGTCTGGTCGTCGTCGTCGTCGTCGTTGTCGTCGTTGACGATTGACGTTGGCGTAAATCGGGTCAAAAGACTCGTTTATAAAAGGTTTTCGATTGCTGTTTTTTTAGAGTGTGATTTAGAATCGCAATAAAAAAGGAGGAGCAGCAACAGCAGCGCAAATTGAGTTTAATATTGTTGTTGTTGCTCTCGTCGTAGTTGTTGTTGTTGTCGTTGTAGTAGTCGTCGTTGTTGTGTTCATTGT ************************************************..((((......((((.((.(((....))).)))))).................((..(((((((...((.((((...)))).)).)))))))..))(((((.(((((.((...((((.....))))....)).))))).))))).))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	O002 Head	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR902009 testis	SRR553487 NRT_0-2 hours eggs	M023 head	M024 male body
..................................................................................................................................................................................................CTCGTCGTAGTTGTTGTTGTT...................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0
.................................GTTGTCGTCGTTGACG.........................................................................................................................................................................................................	16	0	20	0.70	14	14	0	0	0	0	0	0	0
.......................................................................................................GCTGTTTTTTGACAGTGTGAC..............................................................................................................................	21	3	3	0.33	1	0	0	0	1	0	0	0	0
.........................................................................GAAAGACTCGTTTATAAAAGACT..........................................................................................................................................................	23	3	3	0.33	1	0	0	1	0	0	0	0	0
...............................................................................................................................................................................TAATATTGTTGTTGTTG..........................................................	17	0	3	0.33	1	1	0	0	0	0	0	0	0
..................................TTGTCGTCGTTGACG.........................................................................................................................................................................................................	15	0	20	0.25	5	5	0	0	0	0	0	0	0
..............................................................................................................................................................................TTAATATTGTTGTTGT............................................................	16	0	4	0.25	1	1	0	0	0	0	0	0	0
..................................................................................................................................................GGAGCACCAACAGAAGCGC.....................................................................................	19	2	4	0.25	1	0	0	1	0	0	0	0	0
................................................................................................................................................................................AAAATTGTTGTTGTTGCT........................................................	18	1	4	0.25	1	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................TTGCTGCTCTCGTCGTATTAG...........................................	21	3	5	0.20	1	0	0	0	0	1	0	0	0
...................................................................................TTTATAAGAGGTTTTGGATT...................................................................................................................................................	20	2	6	0.17	1	0	0	0	0	0	1	0	0
....................................................................TGGTCAAAAGACTCGTTA....................................................................................................................................................................	18	2	10	0.10	1	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................TCGACGTTGTTGGGGTCATT..	20	3	20	0.05	1	0	0	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	x:9449577-9449826 +	dsi_15304	AAAATACAGACA---GACCAGC-----------AGCA------GCAGCAGC------------AGCAACA---GC------AGC------------------AACTGCTA---------ACTGCAACCGCATTTAGCCCAGTT------TTC-------------------T-----GAGCAA--ATATTTTCCA---------AAAGCTAACGACAA--------AAAAATCTCACAC-------TAA---ATCTTAGC---G-TTATTTTT-TC-CTCCTCGTCG---T----TGTC------------------------------------------------GTCGCGTTTAACTCAAATTAT------------------------------------AACAA-----------------------------------------------------------------------------------------------------------------CAACAACGAGAGCAGCATCAA------------------------------------CAACAACA-ACAGCAACAT---CATCAGCAGCAACAACACAA---------GTAACA
droSec2	scaffold_15:625794-626040 +		AAAATACAGACA---GACCAGC-----------AGCA------GCAGCAGC------------AGCAACA---GC------AGC------------------CACTGCTA---------ACTACAACCGCATTTAGCCCAGTT------TTC-------------------T-----GAGCAA--ATATTTTCCA---------AAAGCTAACGACAA--------AAAAATCTCACAC-------TAA---ATCTTAGC---G-TTATTTTT-TC-CTCCTCGTCG---T----TGTC------------------------------------------------GTCGCGTTTAACTCAAATTAT------------------------------------AACAA-----------------------------------------------------------------------------------------------------------------CAACAACGAGAGCAGCATCAA---------------------------------------CAACA-ACAGCAACAT---CATCAGCAGCAACAACACAA---------GTAACA
dm3	chrX:9911439-9911700 +		AAAATACAGACA---GACCAGC-----------AGCA------GCAGCAGC------------AGCAACAACAGC------AGC------------------AACTGCTA---------ACTGCAACCGCATTTAGCCCAGTT------TTC-------------------T-----GAGCAA--ATATTTTCGA---------AAAGCTAACGACAA--------AAAAATCTCACAC-------TAA---ATCTTAGC---G-TTATTTTT-TC-CTCCTCGTCG---T----TGTC------------------------------------------------GTCGCGTTTAACTCAAATTAT------------------------------------AACAACAATA------------------A--------------------------------------------------------------------------------------AAACAACAACGAGAGCAGCAGCAG------------------------------------CAGCAACA-GCAACATCAG---CAGCAGCAACAACAACAACA---------GTAACA
droEre2	scaffold_4690:5196035-5196298 -		AAAAAACAGACA---CACC-GC-----------AGCA------GCAGCAGC------------AGCAACAACAGC------AGC------------------AACTGCTA---------ACTGCAACCGCATTTAGCCCAGTT------TTC-------------------T-----GAGCAA--ATATTTTCCA---------AAAGCTAACGACAA--------AAAAATCTCACAC-------TAA---ATCTTAGC---G-TTATTTTT-TC-CTCCTCGTCG---T----TGTC------------------------------------------------GTCGCGTTTAACTCTAATTAT------------------------------------AACAACAA--------------------------------------------------------------------------------------------------------------CAACAACGAGAGCAGCAGCAACAGCAGCAG---------------------------CAGCAGCA-ACAGCAACAG---CAGCAACTTCAGCAGCAGCA---------ACAACA
droYak3	X:18501593-18501878 +		AAAATACAGACA---CCCCAGC-----------AGCA------GCAACAGC------------AACAACA---AC---------AACAGCAAAAACAGCAGCAACTGCTAAACTGCTAAACTGCAACCGCATTTAGCCCAGTT------TTC-------------------T-----GCGCAA--ATATTTTCCA---------AAAGCTAACGACAA--------AAAAATCTCACAC-------TAA---ATCTTAGC---G-TTATTTTT-TC-CTCCTCGTCG---T----TGTC------------------------------------------------GTCGCGTTTAACTCAAATTAT------------------------------------AACAACAACA------------------A--------------------------------------------------------------------------------------CAACAACAACGAGAGCAGCAGCAG------------C---------------------AGCAACAACA-ACAGCGGCAA---CTTCAGCAACAGCAGCAACA---------ACAACA
droEug1	scf7180000409509:983693-983951 -		AAAATACAGACA---CA---------GC--------AGCGACAACAACAAC------------AGTAACA---AC------AACAAC----------------------------------TGCAACCGCATTTAGCCCAGTT------TTC-------------------T-----GAGCAA--ATATTTTCCA---------AAAGCTAACGACAA---------AAAATCTCACAC-------TAA---ATCTTAGC---G-TTATTT-T-TC-CTCCTCGTCG---T----TGTC------------------------------------------------GTCGCGTTTAACTGAAATAAT------------------------------------AACAACAA--------------------------------------------------------------------------------------------------------------CAACAACGAGAGCAGCAGCAGCAACAGCAACAAC---------------------AGCAGCAACA-G---CAACAGCAACAGCA---GCAACA------CCATTGCCAGCAGCA
droBia1	scf7180000302187:1481455-1481695 -		AAAATGCAGACA---CA---------GC--------A------GCAGCAGC------------AGCAA---------------CAAC----------------------------------TGCAACCGCATTTAGCCCAGTT------TTC-------------------T-----GAGCAA--ATATTTTCCA---------AGAGCTAACGACAA----------AAATCTCACAC-------TAA---ATCTTAGC---G-CTATTTCT-TC-CTCCTCGTCG---T----TGTC------------------------------------------------GTCGCGTTTAACTGAAATAAC------------------------------------AATAACAACA------------------C--------------------------------------------------------------------------------------CAGCAACAAGGAGAGCAGCAGCAG------------------------------------CAGCAGCA-ACAGCAACAG---CAGCAGCAGCAACA------CCATTGCCAGCAGCA
droTak1	scf7180000415872:581285-581540 +		AAAACA----------------------------GCAGCAGCAACAGCAAC------------AGCAGCA---AC------AACAACTGC-------------------------------AACAACCGCATTTAGCCCAGTT------TTC-------------------T-----GAGCAA--ATATTTTCCAA--------AAAGCTAACGACAA---------AAAATCTCACAC-------TAA---ATCTTAGC---A-TTATTTTT-TC-CTCCTCGTCG---T----TGTC------------------------------------------------GTCGCGTTTAACTGAAATAAT------------------------------------AACAACAA--------------------------------------------------------------------------------------------------------------CAACAACGAGAGCAGCAGCAACATCAGCAGCAGC---------------------AACAGCAACA-G---CAACCGCGACAGCA---GCAACA------CCATTGCCAGCAGCA
droEle1	scf7180000491013:835027-835294 +		AAAATACAGACA---G----GC---AGC--------A------ACAGCAAC------------AGCA------AC------AACTACTGC-------------------------------AGCAACCGCATTTAGCCCAGTT------TTC-------------------T-----GAGCAA--ATAGTTTCCAA--------AAAGCTAACGACAA-CAACA--AAAAATCTCACAC-------TAA---ATCTTAGC---G-TTATTTTTTTC-CTCCTCGTCGCGGT----TGTC------------------------------------------------GTCGCGTTAAACTGAAATAAT------------------------------------AATAACAACA------------------A--------------------------------------------------------------------------------------CA-----AACGAGAGCAGCAGCAACAACAGCAGAAAC---------------------AACAACAGCA-GCATCAACAA---CAACATCAGCAGCAGCAACA---------ACAGCA
droRho1	scf7180000780080:136112-136385 -		AAAATACAGACA---CA---------GC--------AGCAGCACCAGCAGC------------AGCAACA---AC------AACAAC----------------------------------TGCAACCGCATTTAGCCCAGTT------TTC-------------------T-----GAGCAA--ATATTTTCCA---------AAAGCTAACGACAA---------AAAATCTCACAC-------TAA---ATCTTAGC---G-TTATTT-T-TC-CTCCTCGTCG---T----TGTC------------------------------------------------GTCGCGTTTAACTGAAATAAT------------------------------------AACAACA--------------------------------------------------------------------------------------------------------------------ACGACAGCAGCAGCAACAGCAACAGCGACAACAACAGCAGCAACATTAGCAGCAGCAGCA-GCAACAAGAG---CAGCA---GCAACA------CCATTGCCAGCAGCA
droFic1	scf7180000454073:2846770-2847040 +		AAAATACAGACA---CA---------GCAGAGCACCA------GCATCAGCAGCAAAAACAACAACAACA---AC------AACAAC----------------------------------TGCAACCGCATTTAGCCCAGTT------TTC-------------------T-----GAGCAA--ATTTTTTCAA---------AAAGCTAACGACAA----------AAATCTCACAC-------TAA---ATCTTAGC---G-TTATTTTT-TC-CTCCTCGTCG---T----TGTC------------------------------------------------GTCGCGTTTAACTAAAATAAT------------------------------------AACAA--------------------------------------------------------------------------------------------------------------------CAACGAGAGCAGCAGCAATTGCAATAGCAACAAC------------------AACAAAAACACA---CAACAGCAGTAGCA---GCAACA------CCATTGCTAGCAGCA
droKik1	scf7180000302592:342606-342875 -		AAAAAATAAA-A---TA---GAGGCTGC--------A------CTAGCCGC------------AGCA------GC------AGCACCAGC-------------------------------AGCAACCGCATTTAGCCCAGTT------TTC-------------------T-----AAGCAAAAATATTTTACAAAAAAAAAAAAAACTAACGACAAAC---AAAAAATATCTCACAC-------TAA---ATCTTAGC---G-TTATTTTT-TC-CTCCTCGTCG---T----TGTC------------------------------------------------GTCGCGTTTAACTGAAATAAT------------------------------------AACAACAA-----------------------------------------------------------------------------------------------------------CAACAACAACGAGAGCAGCAGCAGCAGCAGCAA---------------------------CAAT---A-TTGGCAACAA---CAACCACAGCAGCAGCAGCA---------GCAGCA
droAna3	scaffold_13117:3550102-3550341 -		CAACAACAGAAG---CA---------AC--------A------ACAACAGA------------AGCA------AA------AACAACAGA-------------------------------AACAACAACATCGAGTTCATCAATTCTGGCC-------------------A-----CAACAA--CAAGTGTTTA---------A--------GCCAA--------AAGAGTTCGGCAT-------GAA---ATGGAAGC---AGCTATACGC-TC-CACTTCAGTG---CAGGTCGGT------------------------------------------------GCTCCGCCGCCCACAAACAAC------------------------------------AACAA-----------------------------------------------------------------------------------------------------------------CAACAACA---------------ACAGTAGCAAC---------------------AACAACAGCA-GCAGTAACAG---TAGCAACAGCAACAACAACA---------GCAACA
droBip1	scf7180000395895:8399-8669 +		AACAA-CAACAA---CA---AC---AGC--------A------TCAACAAC------------ATCAA------C------AACATCAGC------------AACAAC-A---------ACAACAACATCAT---------------------------------------------CATCAA--AGGGTTGCCA---------GCAGCAACCAGCAG-----------------------------------------------------------------------------CAGC------------------------------------------------TGC------------------AACAGCAACAGCA---------------ACAAC---AACAACAACA------------------ACAGCAGCATG--ATAATGGTCCTGCCTCCCTACCCTTTCCATA---TTCAGTGGCTAATCAGCAAAATACAAAATCAGCT------CAACAACAACA---------------ACAACAGCAGC---------------------AGCAGCAACA-ACAACAACAA---CATCAGCAACATCAACAACA---------ACAACA
dp5	XL_group3a:1144183-1144419 +		AAAAAACATGCA---CTCA-------GC----CTCCA------GCCCCAGC------------AGCCCCA---GC------AGCCACTGC-------------------------------AGCGCCAGCATTTAGCCCACTT------TTC-------------------------GAGCAA--ATATTTTTGC---------AAATCTAACGACAA-C------AAAAATCTCACACA------TAA---ATCCTAGC---G-TAATTTTT-TT--CCGTCGCCG---C----CGCCGC----------------------------------------------GTTGCGTTTTACTTGGA--------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAACTAGAGCAGCGACT--------------------------------------AAGTACA-ACAACAACAG---CAGCAACAGTCACTGAAATA---------ATAGCA
droPer2	scaffold_2:5826535-5826766 -		ACAGCA-----ACAGCA---GC---AGC--------A------GCAACAAC------------AGCA------AC------AGCAACAAC---------------AGC-A---------ACAGCAGCAGCAGC-AG----------------CAAGTTTTTGCTGTCAGCAGCATTAAAGTA-----------AAAAGTGAAAACA------CATTAG-----------------------------------------------------------------------------CAGC------------------------------------------------AGT------------------AACAGCAACAGTT---------------GCAACACCAACAACAACAACAACTAATGCA---ACAC--------------------------------------------------------------------------------------CAGCAGCAACG---------------CCAGCAGCAAC---------------------AGCAGCAGCA-ACAGCAACAG---TAGCAGCAGCAACAGTAGCA---------GCAGCA
droWil2	scf2_1100000004909:9900692-9900909 +		AAAGAGCAGCAA---GCCCAAC-----------AAGA------GCAGCAGC------------AGCAACA---GCAGCAGCAGCGTCGAC-------------------------------AACAACAG-----------------------------------------------------------GAGTTGC---------AACGCCAGC--------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCAACAACAACAGCAATTGGAATTGATTAAGCAACAACGAAAGCAACAAGAACTA---CATTTACAG--------------------------------------------------------------------------------------CAGCAACAGCG---------------ACAGCAGCAAC---------------------AACAACAACA-ACAACAGCAG---CAGCAGCAACAACAACAACA---------ACAACA
droVir3	scaffold_12932:351834-352068 -		ACAACAACAACA---G-----C---AAC--------A------GTAGCAGC------------AGCA------GC------AGCAGCAGCAGCA---GC---AGC----------------AGCAACAGCAG--------------------CAG----------------------C--------------------------------AGCAGCAG---------CAGCTC--------------------------------------------CATGTTGCAG---T----TGCCATAGCTACATATATAGCACGCAAAATCTGTTCTATCAGCTTACACATGCTCAT-----GCTTCAGTGGC------------------------------------AATATGTA--------------------C--------------------------------------------------------------------------------------GAGCAGCAGCT---------------ACAGCAGCAAC---------------------AGCAACAACA-ACAGCAGCAG---CAGCAGCAGCAGCAGCAGCA---------GGAACA
droMoj3	scaffold_6473:8333292-8333541 +		CGAGCACAGCTG---CA---------GCAGC--AACT------GCAGCAAC------------AGCAACT---GC------AGCACCAGC---A---GC---AGC----A---------ATAACAGCTGCAG---------------------------------------------TTGCAA--CTGGGAGCAA---------AACGCCAACAATTT--------AT----------CAAAATGCCAATGTGGTGCAGCAGCA---ATTGTT-GCCTCCACCGCCA---C----CGCCACT---------------------------------------------GCCGC----AGCCCCAGCAAC------------------------------------AACAACAACA------------------A--------------------------------------------------------------------------------------CAACAACAACA---------------ACAGCAACAAC---------------------AACACTATCA-ACAACAACAA---CAGCAACAGCAACAACAACA---------GCAACA
droGri2	scaffold_15203:7100592-7100818 -		CAGTCGCAGCAGCAGCACCAGC-----------AGCA------GCACTTGC------------AGCAGCA---GC------AACGACAGC-------------------------------AGCATCAGCAA---------------------------------------------C--------------------------------AGCAACAA---------AAACAC--------------------------------------------C------------------------------------------------------------------------------AACAGCAGCAAC------------------------------------AACAACAACA------------------CCGGCAACAAATAATAA----------------------CCATAACATCCGCAAGCTGAGCGC-------CGAAAACATGTCGAAAACAACAACAACA---------------GCCGCAGCAAC---------------------ATCAACAGCA-ACAACGACAT---CAGCAACAGCAACAGCAGCA---------GCAGCA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AAAATACAGACA---GACCAGC-----------AGCA------GCAGCAGC------------AGCAACA---GC------AGC------------------AACTGCTA---------ACTGCAACCGCATTTAGCCCAGTT------TTC-------------------T-----GAGCAA--ATATTTTCCA---------AAAGCTAACGACAA--------AAAAATCTCACAC-------TAA---ATCTTAGC---G-TTATTTTT-TC-CTCCTCGTCG---T----TGTC------------------------------------------------GTCGCGTTTAACTCAAATTAT------------------------------------AACAA-----------------------------------------------------------------------------------------------------------------CAACAACGAGAGCAGCATCAA------------------------------------CAACAACA-ACAGCAACAT---CATCAGCAGCAACAACACAA---------GTAACA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
............................................................................................................................................................................................................................................................................TTTTT-TC-CTCCTCGTCG---T----TGTC------------------------------------------------G................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCATCAA------------------------------------CAACAAC..................................................	18	8	0.88	7	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAT---CATCAGCAGCA........................	15	17	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................AGC------------AGCAACA---GC------AGC------------------A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAACACA................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

AAAATACAGACA---GACCAGC-----------AGCA------GCAGCAGC------------AGCAACA---GC------AGC------------------CACTGCTA---------ACTACAACCGCATTTAGCCCAGTT------TTC-------------------T-----GAGCAA--ATATTTTCCA---------AAAGCTAACGACAA--------AAAAATCTCACAC-------TAA---ATCTTAGC---G-TTATTTTT-TC-CTCCTCGTCG---T----TGTC------------------------------------------------GTCGCGTTTAACTCAAATTAT------------------------------------AACAA-----------------------------------------------------------------------------------------------------------------CAACAACGAGAGCAGCATCAA---------------------------------------CAACA-ACAGCAACAT---CATCAGCAGCAACAACACAA---------GTAACA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...................................CA------GCAGCAGC------------AGCAACA---GC------AGC------------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0

dm3

AAAATACAGACA---GACCAGC-----------AGCA------GCAGCAGC------------AGCAACAACAGC------AGC------------------AACTGCTA---------ACTGCAACCGCATTTAGCCCAGTT------TTC-------------------T-----GAGCAA--ATATTTTCGA---------AAAGCTAACGACAA--------AAAAATCTCACAC-------TAA---ATCTTAGC---G-TTATTTTT-TC-CTCCTCGTCG---T----TGTC------------------------------------------------GTCGCGTTTAACTCAAATTAT------------------------------------AACAACAATA------------------A--------------------------------------------------------------------------------------AAACAACAACGAGAGCAGCAGCAG------------------------------------CAGCAACA-GCAACATCAG---CAGCAGCAACAACAACAACA---------GTAACA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
......................................................................................................................................................TC-------------------T-----GAGCAA--ATATTTTCGA---------AAAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TCGTCG---T----TGTC------------------------------------------------GTCGCGTTTAACTCAAAA...............................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------------------------------------------------------------------------------------AAACAACAACGAGAGCAGCAGCAG------------------------------------.........................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................C---G-TTATTTTT-TC-CTCCTCGTCG---T----.....................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................CTCCTCGTCG---T----TGTC------------------------------------------------GTCGCGT..........................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................CTCGTCG---T----TGTC------------------------------------------------GTCGCGT..........................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................CGTCG---T----TGTC------------------------------------------------GTCGCGTTTA.......................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................GCAGC------------AGCAACAACAGC------A..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CAGCAGCAACAACAACAACA---------......	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.............................................AGCAGC------------AGCAACAACAGC------AG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAG------------------------------------CAGCAACA-GCAA............................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................AGCAGC------------AGCAACAACAGC------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................AGCA------GCAGCAGC------------AGCAACAACAGC------A..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................AGCAGC------------AGCAACAACAGC------A..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AAAAAACAGACA---CACC-GC-----------AGCA------GCAGCAGC------------AGCAACAACAGC------AGC------------------AACTGCTA---------ACTGCAACCGCATTTAGCCCAGTT------TTC-------------------T-----GAGCAA--ATATTTTCCA---------AAAGCTAACGACAA--------AAAAATCTCACAC-------TAA---ATCTTAGC---G-TTATTTTT-TC-CTCCTCGTCG---T----TGTC------------------------------------------------GTCGCGTTTAACTCTAATTAT------------------------------------AACAACAA--------------------------------------------------------------------------------------------------------------CAACAACGAGAGCAGCAGCAACAGCAGCAG---------------------------CAGCAGCA-ACAGCAACAG---CAGCAACTTCAGCAGCAGCA---------ACAACA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................T------------------------------------AACAACAA--------------------------------------------------------------------------------------------------------------CAACAACGAGAGCAG...................................................................................................	24	1	2.00	2	0	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................CTAATTAT------------------------------------AACAACAA--------------------------------------------------------------------------------------------------------------CAAC..............................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAA--------------------------------------------------------------------------------------------------------------CAACAACGAGAGCAG...................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................AA--------------------------------------------------------------------------------------------------------------CAACAACGAGAGCAGCAGC...............................................................................................	21	1	1.00	1	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAGCAG---------------------------CAGCA....................................................	21	20	0.15	3	3	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CAGCAACTTCAGCAGCAGC................	20	8	0.13	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAGCAGCAG---------------------------CAGCA....................................................	22	20	0.05	1	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAG---------------------------CAGCAGCA-AC..............................................	20	20	0.05	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAGCAGCAG---------------------------C........................................................	21	20	0.05	1	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAG---------------------------CAGCAGCA-ACAG............................................	20	20	0.05	1	1	0	0	0	0	0	0
....................................A------GCAGCAGC------------AGCAACAACAGC------AGC------------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0	0

droYak3

AAAATACAGACA---CCCCAGC-----------AGCA------GCAACAGC------------AACAACA---AC---------AACAGCAAAAACAGCAGCAACTGCTAAACTGCTAAACTGCAACCGCATTTAGCCCAGTT------TTC-------------------T-----GCGCAA--ATATTTTCCA---------AAAGCTAACGACAA--------AAAAATCTCACAC-------TAA---ATCTTAGC---G-TTATTTTT-TC-CTCCTCGTCG---T----TGTC------------------------------------------------GTCGCGTTTAACTCAAATTAT------------------------------------AACAACAACA------------------A--------------------------------------------------------------------------------------CAACAACAACGAGAGCAGCAGCAG------------C---------------------AGCAACAACA-ACAGCGGCAA---CTTCAGCAACAGCAGCAACA---------ACAACA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................CAACA------------------A--------------------------------------------------------------------------------------CAACAACAACG..........................................................................................................	17	20	0.65	13	0	0	0	0	0	0	0	0	0	0	13
.........................................................................................................................................................................................................................................................................................................................................................................................................................CAACA------------------A--------------------------------------------------------------------------------------CAACAACAACGAGAG......................................................................................................	21	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAG------------C---------------------AGCAACAACA-ACAGC...........................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...................AGC-----------AGCA------GCAACAGC------------AACAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAG------------C---------------------AGCAACAACA-................................................	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAGCAACA---------ACAAC.	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

AAAATACAGACA---CA---------GC--------AGCGACAACAACAAC------------AGTAACA---AC------AACAAC----------------------------------TGCAACCGCATTTAGCCCAGTT------TTC-------------------T-----GAGCAA--ATATTTTCCA---------AAAGCTAACGACAA---------AAAATCTCACAC-------TAA---ATCTTAGC---G-TTATTT-T-TC-CTCCTCGTCG---T----TGTC------------------------------------------------GTCGCGTTTAACTGAAATAAT------------------------------------AACAACAA--------------------------------------------------------------------------------------------------------------CAACAACGAGAGCAGCAGCAGCAACAGCAACAAC---------------------AGCAGCAACA-G---CAACAGCAACAGCA---GCAACA------CCATTGCCAGCAGCA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AAAATGCAGACA---CA---------GC--------A------GCAGCAGC------------AGCAA---------------CAAC----------------------------------TGCAACCGCATTTAGCCCAGTT------TTC-------------------T-----GAGCAA--ATATTTTCCA---------AGAGCTAACGACAA----------AAATCTCACAC-------TAA---ATCTTAGC---G-CTATTTCT-TC-CTCCTCGTCG---T----TGTC------------------------------------------------GTCGCGTTTAACTGAAATAAC------------------------------------AATAACAACA------------------C--------------------------------------------------------------------------------------CAGCAACAAGGAGAGCAGCAGCAG------------------------------------CAGCAGCA-ACAGCAACAG---CAGCAGCAGCAACA------CCATTGCCAGCAGCA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AAAACA----------------------------GCAGCAGCAACAGCAAC------------AGCAGCA---AC------AACAACTGC-------------------------------AACAACCGCATTTAGCCCAGTT------TTC-------------------T-----GAGCAA--ATATTTTCCAA--------AAAGCTAACGACAA---------AAAATCTCACAC-------TAA---ATCTTAGC---A-TTATTTTT-TC-CTCCTCGTCG---T----TGTC------------------------------------------------GTCGCGTTTAACTGAAATAAT------------------------------------AACAACAA--------------------------------------------------------------------------------------------------------------CAACAACGAGAGCAGCAGCAACATCAGCAGCAGC---------------------AACAGCAACA-G---CAACCGCGACAGCA---GCAACA------CCATTGCCAGCAGCA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AAAATACAGACA---G----GC---AGC--------A------ACAGCAAC------------AGCA------AC------AACTACTGC-------------------------------AGCAACCGCATTTAGCCCAGTT------TTC-------------------T-----GAGCAA--ATAGTTTCCAA--------AAAGCTAACGACAA-CAACA--AAAAATCTCACAC-------TAA---ATCTTAGC---G-TTATTTTTTTC-CTCCTCGTCGCGGT----TGTC------------------------------------------------GTCGCGTTAAACTGAAATAAT------------------------------------AATAACAACA------------------A--------------------------------------------------------------------------------------CA-----AACGAGAGCAGCAGCAACAACAGCAGAAAC---------------------AACAACAGCA-GCATCAACAA---CAACATCAGCAGCAGCAACA---------ACAGCA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AAAATACAGACA---CA---------GC--------AGCAGCACCAGCAGC------------AGCAACA---AC------AACAAC----------------------------------TGCAACCGCATTTAGCCCAGTT------TTC-------------------T-----GAGCAA--ATATTTTCCA---------AAAGCTAACGACAA---------AAAATCTCACAC-------TAA---ATCTTAGC---G-TTATTT-T-TC-CTCCTCGTCG---T----TGTC------------------------------------------------GTCGCGTTTAACTGAAATAAT------------------------------------AACAACA--------------------------------------------------------------------------------------------------------------------ACGACAGCAGCAGCAACAGCAACAGCGACAACAACAGCAGCAACATTAGCAGCAGCAGCA-GCAACAAGAG---CAGCA---GCAACA------CCATTGCCAGCAGCA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AAAATACAGACA---CA---------GCAGAGCACCA------GCATCAGCAGCAAAAACAACAACAACA---AC------AACAAC----------------------------------TGCAACCGCATTTAGCCCAGTT------TTC-------------------T-----GAGCAA--ATTTTTTCAA---------AAAGCTAACGACAA----------AAATCTCACAC-------TAA---ATCTTAGC---G-TTATTTTT-TC-CTCCTCGTCG---T----TGTC------------------------------------------------GTCGCGTTTAACTAAAATAAT------------------------------------AACAA--------------------------------------------------------------------------------------------------------------------CAACGAGAGCAGCAGCAATTGCAATAGCAACAAC------------------AACAAAAACACA---CAACAGCAGTAGCA---GCAACA------CCATTGCTAGCAGCA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AAAAAATAAA-A---TA---GAGGCTGC--------A------CTAGCCGC------------AGCA------GC------AGCACCAGC-------------------------------AGCAACCGCATTTAGCCCAGTT------TTC-------------------T-----AAGCAAAAATATTTTACAAAAAAAAAAAAAACTAACGACAAAC---AAAAAATATCTCACAC-------TAA---ATCTTAGC---G-TTATTTTT-TC-CTCCTCGTCG---T----TGTC------------------------------------------------GTCGCGTTTAACTGAAATAAT------------------------------------AACAACAA-----------------------------------------------------------------------------------------------------------CAACAACAACGAGAGCAGCAGCAGCAGCAGCAA---------------------------CAAT---A-TTGGCAACAA---CAACCACAGCAGCAGCAGCA---------GCAGCA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CAACAACAGAAG---CA---------AC--------A------ACAACAGA------------AGCA------AA------AACAACAGA-------------------------------AACAACAACATCGAGTTCATCAATTCTGGCC-------------------A-----CAACAA--CAAGTGTTTA---------A--------GCCAA--------AAGAGTTCGGCAT-------GAA---ATGGAAGC---AGCTATACGC-TC-CACTTCAGTG---CAGGTCGGT------------------------------------------------GCTCCGCCGCCCACAAACAAC------------------------------------AACAA-----------------------------------------------------------------------------------------------------------------CAACAACA---------------ACAGTAGCAAC---------------------AACAACAGCA-GCAGTAACAG---TAGCAACAGCAACAACAACA---------GCAACA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-GCAGTAACAG---TAGCAACAGC.........................	23	1	2.00	2	0	2	0	0	0	0
..........................................................................................................................................CATCAATTCTGGCC-------------------A-----CAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................................................................................................................AAGAGTTCGGCAT-------GAA---ATGGAAGC---.....................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................TCGAGTTCATCAATTCTGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................AACAA--CAAGTGTTTA---------A--------GCC....................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG---TAGCAACAGCAACAAC...................	21	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................CACTTCAGTG---CAGGTCGGT------------------------------------------------GCTCCGC..........................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................CTTCAGTG---CAGGTCGGT------------------------------------------------G................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................GAGTTCGGCAT-------GAA---ATGGAAGC---.....................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................GTTCGGCAT-------GAA---ATGGAAG.........................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................................................................................................................TCGGCAT-------GAA---ATGGAAGC---.....................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................AA--------AAGAGTTCGGCAT-------GAA---ATGGAAGC---.....................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................TTCAGTG---CAGGTCGGT------------------------------------------------GCT..............................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC---------------------AACAACAGCA-GCAGTAAC........................................	22	1	1.00	1	0	1	0	0	0	0
...........................C--------A------ACAACAGA------------AGCA------AA------AAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
...........................C--------A------ACAACAGA------------AGCA------AA------AACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................CAA--------AAGAGTTCGGCAT-------GAA---ATGGAAGC---.....................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................CATCGAGTTCATCAATTCTGGCC-------------------A-----CAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................AAC------------------------------------AACAA-----------------------------------------------------------------------------------------------------------------CAACAACA---------------ACAGTAGCAAC---------------------...........................................................	27	1	1.00	1	0	1	0	0	0	0
.................................................................................AACAACAGA-------------------------------AACAACAACATCGAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0
......................................................................................................................................................................................A--CAAGTGTTTA---------A--------GCCAA--------AAGA......................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.......................................................................................................................................GTTCATCAATTCTGGCC-------------------A-----CAACAA--CAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCA-GCAGTAACAG---TAGCAAC............................	23	1	1.00	1	0	1	0	0	0	0
...........................................ACAACAGA------------AGCA------AA------AACAACAGA-------------------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................AGTTCGGCAT-------GAA---ATGGAAGC---A....................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................CCAA--------AAGAGTTCGGCAT-------GAA---ATG.............................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACA---------------ACAGTAGCAAC---------------------AACAAC.....................................................	23	2	0.50	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................A-----------------------------------------------------------------------------------------------------------------CAACAACA---------------ACAGTAGCAAC---------------------AACAAC.....................................................	26	2	0.50	1	0	1	0	0	0	0
.................................................................................AACAACAGA-------------------------------AACAACAACATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................CAA-----------------------------------------------------------------------------------------------------------------CAACAACA---------------ACAGTAGCAA.................................................................................	21	4	0.25	1	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................AA-----------------------------------------------------------------------------------------------------------------CAACAACA---------------ACAGTAGC...................................................................................	18	14	0.07	1	0	1	0	0	0	0

droBip1

AACAA-CAACAA---CA---AC---AGC--------A------TCAACAAC------------ATCAA------C------AACATCAGC------------AACAAC-A---------ACAACAACATCAT---------------------------------------------CATCAA--AGGGTTGCCA---------GCAGCAACCAGCAG-----------------------------------------------------------------------------CAGC------------------------------------------------TGC------------------AACAGCAACAGCA---------------ACAAC---AACAACAACA------------------ACAGCAGCATG--ATAATGGTCCTGCCTCCCTACCCTTTCCATA---TTCAGTGGCTAATCAGCAAAATACAAAATCAGCT------CAACAACAACA---------------ACAACAGCAGC---------------------AGCAGCAACA-ACAACAACAA---CATCAGCAACATCAACAACA---------ACAACA	Size	Hit Count	Total Norm	Total
No Reads

dp5

AAAAAACATGCA---CTCA-------GC----CTCCA------GCCCCAGC------------AGCCCCA---GC------AGCCACTGC-------------------------------AGCGCCAGCATTTAGCCCACTT------TTC-------------------------GAGCAA--ATATTTTTGC---------AAATCTAACGACAA-C------AAAAATCTCACACA------TAA---ATCCTAGC---G-TAATTTTT-TT--CCGTCGCCG---C----CGCCGC----------------------------------------------GTTGCGTTTTACTTGGA--------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAACTAGAGCAGCGACT--------------------------------------AAGTACA-ACAACAACAG---CAGCAACAGTCACTGAAATA---------ATAGCA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........CA---CTCA-------GC----CTCCA------GCCCCAGC------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................C------AAAAATCTCACACA------TAA---ATCCTAG.........................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGACT--------------------------------------AAGTACA-ACAACAACAG---CAG................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAG---CAGCAACAGT.........................	18	9	0.11	1	0	0	0	0	1	0	0	0	0	0
............................................CCCCAGC------------AGCCCCA---GC------AGCCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	12	0.08	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA-ACAACAACAG---CAGCAACA...........................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0

droPer2

ACAGCA-----ACAGCA---GC---AGC--------A------GCAACAAC------------AGCA------AC------AGCAACAAC---------------AGC-A---------ACAGCAGCAGCAGC-AG----------------CAAGTTTTTGCTGTCAGCAGCATTAAAGTA-----------AAAAGTGAAAACA------CATTAG-----------------------------------------------------------------------------CAGC------------------------------------------------AGT------------------AACAGCAACAGTT---------------GCAACACCAACAACAACAACAACTAATGCA---ACAC--------------------------------------------------------------------------------------CAGCAGCAACG---------------CCAGCAGCAAC---------------------AGCAGCAGCA-ACAGCAACAG---TAGCAGCAGCAACAGTAGCA---------GCAGCA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
....................................................................................AACAAC---------------AGC-A---------ACAGCAGCAGCAGC-A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	15	0.07	1	0	0	1	0	0	0
.....................................................................................ACAAC---------------AGC-A---------ACAGCAGCAGCAGC-A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	19	0.05	1	0	1	0	0	0	0
......................................................................................CAAC---------------AGC-A---------ACAGCAGCAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0
....................................................................................AACAAC---------------AGC-A---------ACAGCAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0
...GCA-----ACAGCA---GC---AGC--------A------GCAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0

droWil2

AAAGAGCAGCAA---GCCCAAC-----------AAGA------GCAGCAGC------------AGCAACA---GCAGCAGCAGCGTCGAC-------------------------------AACAACAG-----------------------------------------------------------GAGTTGC---------AACGCCAGC--------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCAACAACAACAGCAATTGGAATTGATTAAGCAACAACGAAAGCAACAAGAACTA---CATTTACAG--------------------------------------------------------------------------------------CAGCAACAGCG---------------ACAGCAGCAAC---------------------AACAACAACA-ACAACAGCAG---CAGCAGCAACAACAACAACA---------ACAACA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...........................................................................................................................CAACAG-----------------------------------------------------------GAGTTGC---------AACGCCAGC--------------------------------------------------------------------------------------------------------------------------------------------------.....................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.AAGAGCAGCAA---GCCCAAC-----------AAGA------GCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................AATTGGAATTGATTAAGC..............................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
..............................................................................AGCAGCGTCGAC-------------------------------AACAACAG-----------------------------------------------------------GAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
...........................................................................................................................CAACAG-----------------------------------------------------------GAGTTGC---------AACGCCAGC--------------------------------------------------------------------------------------------------------------------------------------------------AGCA.................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
....................................................................................GTCGAC-------------------------------AACAACAG-----------------------------------------------------------GAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0
...........................................................................AGCAGCAGCGTCGAC-------------------------------AACAACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.................................................................................AGCGTCGAC-------------------------------AACAACAG-----------------------------------------------------------GA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
.................................AAGA------GCAGCAGC------------AGCAACA---GCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	3	0.33	1	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA-ACAACAGCAG---CAGC...............................	19	20	0.30	6	0	0	0	6	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACA-ACAACAGCAG---CAGC...............................	22	20	0.15	3	0	0	0	3	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCG---------------ACAGCAGCAAC---------------------...........................................................	20	7	0.14	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA-ACAACAGCAG---CAGCAGC............................	21	20	0.10	2	0	0	0	2	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA-ACAACAGCAG---CAGCAG.............................	21	20	0.10	2	0	1	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAG---CAGCAGCAAC.........................	19	20	0.10	2	0	0	0	2	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCG---------------ACAGCAGCAAC---------------------...........................................................	18	16	0.06	1	0	0	0	1	0
.................................AAGA------GCAGCAGC------------AGCAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	17	0.06	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCG---------------ACAGCAGCAAC---------------------A..........................................................	18	18	0.06	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAACAACAACA---------ACAACA	25	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA-ACAACAGCAG---CAGCAGCA...........................	22	20	0.05	1	0	0	0	1	0
.............................................AGCAGC------------AGCAACA---GCAGCAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-ACAACAGCAG---CAGCAGCAAC.........................	22	20	0.05	1	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---CAGCAGCAACAACAACAACA---------......	22	20	0.05	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAG---CAGCAGCAACA........................	19	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---CAGCAGCAACAACAACA..................	19	20	0.05	1	0	0	0	0	1
.................................................GC------------AGCAACA---GCAGCAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-ACAACAGCAG---CAGCAGCAACAACA.....................	26	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACA-ACAACAGCAG---CAGC...............................	21	20	0.05	1	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACA-ACAACAGCAG---CAGCAGCAA..........................	26	20	0.05	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACA-ACAACAGCAG---CAGCAGCA...........................	27	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-ACAACAGCAG---CAGCAGCAACA........................	22	20	0.05	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAAC---------------------AACAACAACA-ACAACA..........................................	25	20	0.05	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC---------------------AACAACAACA-ACAACAGCAG---CAGC...............................	28	20	0.05	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAACAACAACA---------ACA...	20	20	0.05	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACA-ACAACAGCAG---CAGCAGC............................	25	20	0.05	1	0	0	0	1	0

droVir3

ACAACAACAACA---G-----C---AAC--------A------GTAGCAGC------------AGCA------GC------AGCAGCAGCAGCA---GC---AGC----------------AGCAACAGCAG--------------------CAG----------------------C--------------------------------AGCAGCAG---------CAGCTC--------------------------------------------CATGTTGCAG---T----TGCCATAGCTACATATATAGCACGCAAAATCTGTTCTATCAGCTTACACATGCTCAT-----GCTTCAGTGGC------------------------------------AATATGTA--------------------C--------------------------------------------------------------------------------------GAGCAGCAGCT---------------ACAGCAGCAAC---------------------AGCAACAACA-ACAGCAGCAG---CAGCAGCAGCAGCAGCAGCA---------GGAACA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...............G-----C---AAC--------A------GTAGCAGC------------AGCA------GC------AGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........A---G-----C---AAC--------A------GTAGCAGC------------AGCA------GC------AGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	6	0.17	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA-ACAGCAGCAG---CAGC...............................	19	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACA-ACAGCAGC........................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CA---G-----C---AAC--------A------GTAGCAGC------------AGCA------GC------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................AGCAACAGCAG--------------------CAG----------------------C--------------------------------AGCAGCAG---------CAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................	28	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACA-ACAGCAGCAG---CAGCAGCAGC.........................	29	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................AACAGCAG--------------------CAG----------------------C--------------------------------AGCAGCAG---------C........................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................AGC----------------AGCAACAGCAG--------------------CAG----------------------C--------------------------------AG........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................CAACAGCAG--------------------CAG----------------------C--------------------------------AGCAGCAG---------CAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACA-ACAGCAGCAG---CAGC...............................	20	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC---------------------AGCAACAACA-ACAGCAGCAG---CAGC...............................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACA-ACAGCAGCAG---CAG................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-ACAGCAGCAG---CAGCAGCAGCA........................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......................................................................................................AGC----------------AGCAACAGCAG--------------------CAG----------------------C--------------------------------AGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................CAGCA---GC---AGC----------------AGCAACAGCAG--------------------CAG----------------------C--------------------------------A.........................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA-ACAGCAGCAG---CAGCAG.............................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................CAGCAGCA---GC---AGC----------------AGCAACAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................AGCAGCAGCA---GC---AGC----------------AGCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................GCAGCAGCAGCA---GC---AGC----------------AGCAACAGCAG--------------------C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................AAC--------A------GTAGCAGC------------AGCA------GC------A..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......CAACA---G-----C---AAC--------A------GTAGCAGC------------T............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA-ACAGCAGCAG---CAGCA..............................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA-ACAGCAGCAG---CAGC...............................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................AACAGCAG--------------------CAG----------------------C--------------------------------AGCAGCAG---------CA.......................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................................................C------------AGCA------GC------AGCAGCAGCAGCA---GC---AGC----------------AGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................AGCAACAGCAG--------------------CAG----------------------C--------------------------------AGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................C---AAC--------A------GTAGCAGC------------AGCA------GC------A..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACA-ACAGCAGCAG---CAG................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CGAGCACAGCTG---CA---------GCAGC--AACT------GCAGCAAC------------AGCAACT---GC------AGCACCAGC---A---GC---AGC----A---------ATAACAGCTGCAG---------------------------------------------TTGCAA--CTGGGAGCAA---------AACGCCAACAATTT--------AT----------CAAAATGCCAATGTGGTGCAGCAGCA---ATTGTT-GCCTCCACCGCCA---C----CGCCACT---------------------------------------------GCCGC----AGCCCCAGCAAC------------------------------------AACAACAACA------------------A--------------------------------------------------------------------------------------CAACAACAACA---------------ACAGCAACAAC---------------------AACACTATCA-ACAACAACAA---CAGCAACAGCAACAACAACA---------GCAACA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCA-ACAACAACAA---CAGCA..............................	20	8	0.13	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAA---CAGCAACAGCA........................	20	20	0.05	1	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCA-ACAACAACAA---CAGCAACA...........................	22	20	0.05	1	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA---CAGCAACAGCAACAACAACA---------GC....	25	20	0.05	1	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAACAACAACA---------GCA...	21	20	0.05	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAACAACA---------GCAACA	22	20	0.05	1	0	0	0	0	1	0

droGri2

CAGTCGCAGCAGCAGCACCAGC-----------AGCA------GCACTTGC------------AGCAGCA---GC------AACGACAGC-------------------------------AGCATCAGCAA---------------------------------------------C--------------------------------AGCAACAA---------AAACAC--------------------------------------------C------------------------------------------------------------------------------AACAGCAGCAAC------------------------------------AACAACAACA------------------CCGGCAACAAATAATAA----------------------CCATAACATCCGCAAGCTGAGCGC-------CGAAAACATGTCGAAAACAACAACAACA---------------GCCGCAGCAAC---------------------ATCAACAGCA-ACAACGACAT---CAGCAACAGCAACAGCAGCA---------GCAGCA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_15304

x:9449627-9449776 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-22.5	-22.5	-22.3