ID:

dsi_15302

 Coordinate:

2l:13537830-13537979 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-26.0 -25.7 -25.7

Flybase annnotation

CDS [2l_13537980_13538154_+]; exon [2l_13537980_13538154_+]; intron [2l_13535197_13537979_+]

Repeatable elements

NameClassFamilyStrand
DOC6_DMLINEJockey-
mature
  1. dsi_15302  2l:13537846-13537873 +
  2. 3l:23409548-23409575 +
star

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CATTTCATTAAAGCTAATGGTAGNNNNNNNNATTAATTTTTCCAGAATCTTGGACAATCCGCTTAATAGGCTTATTGGTCGGTAGCTTTCAGGGTTTATGATCACTTTAAAGCTAATTGTTATGACATTGTTTTAAACATTTTTTATAACTTTTGGTAGCTCATATTACTAATGGGACATTGTATCCAAAATTCTTTAAGAAATTGAACAAAACTCGAACAGTTCGCTTCTGCTGCCAAGGATACGAGGG
**************************************************((((((((((........))(((((((((..((((((.((((((.((((((....((((((((....(((....)))..))))))))......)))))).)))))).)))).))...)))))))))..))))..))))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR902009
testis
 O001
Testis
 M053
female body
 O002
Head
 GSM343915
embryo
..................................................................TAGGCTTATTGGTCGGTAGCTTTCAGGG............................................................................................................................................................ 28 0 2 159.00 318 171 81 0 10 56 0 0 0 0 0 0 0
...............................................TCTTGGACAATCCGCTTAATAGGCT.................................................................................................................................................................................. 25 0 2 103.00 206 42 54 2 66 37 0 5 0 0 0 0 0
........................................................................TATTGGTCGGTAGCTTTCAGGGT........................................................................................................................................................... 23 0 3 68.67 206 74 25 18 36 31 21 0 1 0 0 0 0
..................................................................TAGGCTTATTGGTCGGTAGCTTTCAGG............................................................................................................................................................. 27 0 2 68.50 137 61 34 2 14 26 0 0 0 0 0 0 0
..........................................CAGAATCTTGGACAATCCGCTTAATA...................................................................................................................................................................................... 26 0 2 66.00 132 25 32 1 36 36 2 0 0 0 0 0 0
...............................................TCTTGGACAAACCGCTTAATAGGCT.................................................................................................................................................................................. 25 1 2 57.50 115 18 16 49 19 13 0 0 0 0 0 0 0
..................................................................TAGGCTTATTGGTCGGTAGCTTTCAGGGT........................................................................................................................................................... 29 0 2 51.00 102 56 21 0 2 23 0 0 0 0 0 0 0
..........................................CAGAATCTTGGACAATCCGCTTAATAGGCT.................................................................................................................................................................................. 30 0 2 49.00 98 35 52 0 2 9 0 0 0 0 0 0 0
.................................................TTGGACAATCCGCTTAATAGGCTTA................................................................................................................................................................................ 25 0 2 34.50 69 8 11 3 28 15 4 0 0 0 0 0 0
........................................................................TATTGGTCGGTAGCTTTCAGGGTT.......................................................................................................................................................... 24 0 3 31.33 94 21 8 32 3 7 17 5 1 0 0 0 0
..................................................................TAGGCTTATTGGTCGGTAGCTTT................................................................................................................................................................. 23 0 2 31.00 62 7 3 46 2 1 2 0 1 0 0 0 0
...............................................TCTTGGACAATCCGCTTAATAGGC................................................................................................................................................................................... 24 0 2 30.50 61 9 13 1 19 15 1 2 1 0 0 0 0
.................................................TTGGACAAACCGCTTAATAGGCTTA................................................................................................................................................................................ 25 1 2 29.00 58 0 0 57 0 1 0 0 0 0 0 0 0
.......................................................................TTATTGGTCGGTAGCTTTCAGGGT........................................................................................................................................................... 24 0 3 27.33 82 14 20 14 13 16 5 0 0 0 0 0 0
.................................................TTGGACAATCCGCTTAATAGGCTTAT............................................................................................................................................................................... 26 0 2 27.00 54 2 7 2 23 12 2 5 0 0 1 0 0
..............................................ATCTTGGACAATCCGCTTAATAGGCT.................................................................................................................................................................................. 26 0 2 26.50 53 10 14 1 15 11 0 0 0 0 2 0 0
......................................TTTCCAGAATCTTGGACAATCCGCT........................................................................................................................................................................................... 25 0 2 24.00 48 10 7 0 18 11 1 1 0 0 0 0 0
..........................................CAGAATCTTGGACAAACCGCTTAATAGGC................................................................................................................................................................................... 29 1 2 23.00 46 11 13 14 1 7 0 0 0 0 0 0 0
..............................................ATCTTGGACAAACCGCTTAATAGGCT.................................................................................................................................................................................. 26 1 2 19.00 38 2 2 20 4 10 0 0 0 0 0 0 0
...............................................TCTTGGACAAACCGCTTAATAGGC................................................................................................................................................................................... 24 1 2 18.50 37 9 3 18 4 3 0 0 0 0 0 0 0
.................................................TTGGACAATCCGCTTAATAGGCT.................................................................................................................................................................................. 23 0 2 17.00 34 13 11 0 6 1 3 0 0 0 0 0 0
..........................................CAGAATCTTGGACAAACCGCTTAATAGGCT.................................................................................................................................................................................. 30 1 2 16.50 33 9 19 1 0 4 0 0 0 0 0 0 0
..........................................CAGAATCTTGGACAATCCGCTTAATAGGC................................................................................................................................................................................... 29 0 2 15.50 31 6 11 1 2 11 0 0 0 0 0 0 0
..........................................CAGAATCTTGGACAAACCGCTTAATA...................................................................................................................................................................................... 26 1 2 15.50 31 6 5 4 6 10 0 0 0 0 0 0 0
..................................................................TAGGCTTATTGGTCGGTAGCTTTCAG.............................................................................................................................................................. 26 0 2 14.50 29 13 4 0 8 3 1 0 0 0 0 0 0
........................................TCCAGAATCTTGGACAATCCGCT........................................................................................................................................................................................... 23 0 2 14.50 29 1 10 0 17 1 0 0 0 0 0 0 0
..................................................................TAGGCTTATTGGTCGGTAGCTTTC................................................................................................................................................................ 24 0 2 13.00 26 5 2 17 0 2 0 0 0 0 0 0 0
..............................................ATCTTGGACAAACCGCTTAATAGGC................................................................................................................................................................................... 25 1 2 13.00 26 6 2 11 4 2 1 0 0 0 0 0 0
...............................................TCTTGGACAATCCGCTTAATAGGCTTA................................................................................................................................................................................ 27 0 2 13.00 26 2 4 3 12 4 1 0 0 0 0 0 0
.................................................TTGGACAAACCGCTTAATAGGCTT................................................................................................................................................................................. 24 1 2 12.50 25 0 1 24 0 0 0 0 0 0 0 0 0
.......................................................................TTATTGGTCGGTAGCTTTCAGGGTT.......................................................................................................................................................... 25 0 3 12.00 36 6 4 15 1 5 2 2 1 0 0 0 0
..............................................ATCTTGGACAATCCGCTTAATAGGC................................................................................................................................................................................... 25 0 2 12.00 24 3 6 3 7 4 1 0 0 0 0 0 0
......................................TTTCCAGAATCTTGGACAATCCCACT.......................................................................................................................................................................................... 26 3 2 11.50 23 0 5 0 16 2 0 0 0 0 0 0 0
..........................................CAGAATCTTGGACAATCCGCTTAATAGG.................................................................................................................................................................................... 28 0 2 11.00 22 7 9 0 5 1 0 0 0 0 0 0 0
.................................................TTGGACAAACCGCTTAATAGGCTTAT............................................................................................................................................................................... 26 1 2 11.00 22 1 0 17 2 2 0 0 0 0 0 0 0
..........................................CAGAATCTTGGACAAACCGCTTAAT....................................................................................................................................................................................... 25 1 2 11.00 22 8 2 4 4 4 0 0 0 0 0 0 0
.................................................TTGGACAAACCGCTTAATAGGCT.................................................................................................................................................................................. 23 1 2 10.50 21 10 0 7 0 4 0 0 0 0 0 0 0
........................................TCCAGAATCTTGGACAATCCCACT.......................................................................................................................................................................................... 24 3 2 10.00 20 0 10 0 9 1 0 0 0 0 0 0 0
..........................................CAGAATCTTGGACAATCCCACT.......................................................................................................................................................................................... 22 3 2 9.50 19 0 16 0 3 0 0 0 0 0 0 0 0
.......................................TTCCAGAATCTTGGACAATCCCACT.......................................................................................................................................................................................... 25 3 2 9.00 18 0 10 0 8 0 0 0 0 0 0 0 0
.......................................TTCCAGAATCTTGGACAATCCGCT........................................................................................................................................................................................... 24 0 2 9.00 18 1 4 0 10 3 0 0 0 0 0 0 0
..................................................................TAGGCTTATTGGTCGGTAGCTT.................................................................................................................................................................. 22 0 2 8.50 17 2 0 5 3 7 0 0 0 0 0 0 0
..........................................CAGAATCTTGGACAATCCGCTTAAT....................................................................................................................................................................................... 25 0 2 7.50 15 1 6 3 3 1 0 0 0 0 1 0 0
..................................................................TAGGCTTATTGGTCGGTAGCTTTCA............................................................................................................................................................... 25 0 2 7.50 15 4 1 6 2 0 0 0 2 0 0 0 0
...............................................................TAATAGGCTTATTGGTCGGTAGCT................................................................................................................................................................... 24 0 2 7.50 15 1 0 0 1 2 0 9 0 0 2 0 0
.................................................TTGGACAAACCGCTTAATAGGCTTATTGGT........................................................................................................................................................................... 30 1 2 7.50 15 12 1 0 0 2 0 0 0 0 0 0 0
........................................................................TATTGGTCGGTAGCTTTCAGGG............................................................................................................................................................ 22 0 3 7.33 22 8 3 2 1 3 4 0 0 0 0 0 1
...............................................................TAATAGGCTTATTGGTCGGTAGC.................................................................................................................................................................... 23 0 2 7.00 14 2 2 0 3 5 0 1 0 0 1 0 0
......................................TTTCCAGAATCTTGGACAATCCGC............................................................................................................................................................................................ 24 0 2 7.00 14 2 0 0 3 1 0 0 0 8 0 0 0
...........................................AGAATCTTGGACAATCCGCTTAATAGGCT.................................................................................................................................................................................. 29 0 2 6.50 13 1 6 0 4 1 0 0 0 0 1 0 0
...............................................TCTTGGACAAACCGCTTAATAGGCTA................................................................................................................................................................................. 26 2 2 6.50 13 0 0 13 0 0 0 0 0 0 0 0 0
..................................................TGGACAAACCGCTTAATAGGCTTATTGGT........................................................................................................................................................................... 29 1 2 6.50 13 6 3 0 1 3 0 0 0 0 0 0 0
...............................................................TAATAGGCTTATTGGTCGGTAGCTT.................................................................................................................................................................. 25 0 2 6.00 12 0 1 0 3 0 0 8 0 0 0 0 0
.........................................................TCCGCTTAATAGGCTTATTGGTCGGT....................................................................................................................................................................... 26 0 2 6.00 12 0 1 6 1 0 3 0 1 0 0 0 0
....................................................................GGCTTATTGGTCGGTAGCTTTCAGGGT........................................................................................................................................................... 27 0 3 5.67 17 1 1 13 0 0 0 0 2 0 0 0 0
..............................................ATCTTGGACAAACCGCTTAATAGGCTA................................................................................................................................................................................. 27 2 2 5.50 11 0 0 11 0 0 0 0 0 0 0 0 0
..........................................CAGAATCTTGGACAAACCGCTTAATAGG.................................................................................................................................................................................... 28 1 2 5.50 11 5 3 0 3 0 0 0 0 0 0 0 0
...............................................................TAATAGGCTTATTGGTCGGTAGCTTT................................................................................................................................................................. 26 0 2 5.50 11 0 1 6 0 0 0 3 0 0 1 0 0
...............................................TCTTGGACAATCCGCTTAATAGG.................................................................................................................................................................................... 23 0 2 5.00 10 2 3 0 0 5 0 0 0 0 0 0 0
.......................................................................TTATTGGTCGGTAGCTTTCAGGG............................................................................................................................................................ 23 0 3 5.00 15 2 2 4 3 2 1 0 1 0 0 0 0
...............................................TCTTGGACAAACCGCTTAATAGGCTTA................................................................................................................................................................................ 27 1 2 5.00 10 0 0 10 0 0 0 0 0 0 0 0 0
.................................................TTGGACAATCCGCTTAATAGGCTTATT.............................................................................................................................................................................. 27 0 2 5.00 10 1 2 0 4 3 0 0 0 0 0 0 0
..........................................CAGAATCTTGGACAAACCGCTTAA........................................................................................................................................................................................ 24 1 2 4.50 9 3 0 4 1 0 0 0 1 0 0 0 0
..........................................CAGAATCTTGGACAAACCGCTTAATAG..................................................................................................................................................................................... 27 1 2 4.50 9 0 3 4 0 2 0 0 0 0 0 0 0
..........................................CAGAATCTTGGACAATCCGCTTAATAG..................................................................................................................................................................................... 27 0 2 4.00 8 2 2 0 2 1 0 1 0 0 0 0 0
...........................................................CGCTTAATAGGCTTATTGGTCGGTAGC.................................................................................................................................................................... 27 0 2 4.00 8 1 4 3 0 0 0 0 0 0 0 0 0
..........................................CAGAATCTTGGACAATCCGCTTAA........................................................................................................................................................................................ 24 0 2 4.00 8 2 0 1 4 1 0 0 0 0 0 0 0
...............................................TCTTGGACAATCCGCTTAATAGGCTTAT............................................................................................................................................................................... 28 0 2 3.50 7 2 0 0 0 2 0 3 0 0 0 0 0
.....................................TTTTCCAGAATCTTGGACAATCCGCT........................................................................................................................................................................................... 26 0 2 3.50 7 0 2 0 3 2 0 0 0 0 0 0 0
......................................TTTCCAGAATCTTGGACAATCCGCTT.......................................................................................................................................................................................... 26 0 2 3.50 7 3 0 0 4 0 0 0 0 0 0 0 0
.......................................................................TTATTGGTCGGTAGCTTTCAGGGTA.......................................................................................................................................................... 25 1 3 3.33 10 1 0 9 0 0 0 0 0 0 0 0 0
.................................................TTGGACAAACCGCTTAATAGGCTTATTGG............................................................................................................................................................................ 29 1 2 3.00 6 1 1 0 1 3 0 0 0 0 0 0 0
..........................................................................TTGGTCGGTAGCTTTCAGGGT........................................................................................................................................................... 21 0 3 3.00 9 1 2 1 3 2 0 0 0 0 0 0 0
.......................................................................TTATTGGTCGGTAGCTTTCA............................................................................................................................................................... 20 0 3 3.00 9 0 0 0 1 0 0 0 0 8 0 0 0
..................................................................TAGGCTTATTGGTCGGTAGCTTTA................................................................................................................................................................ 24 1 2 3.00 6 0 0 6 0 0 0 0 0 0 0 0 0
...............................................TCTTGGACAAACCGCTTAATAGGCA.................................................................................................................................................................................. 25 2 2 3.00 6 0 0 6 0 0 0 0 0 0 0 0 0
....................................................................GGCTTATTGGTCGGTAGCTTTCAGGG............................................................................................................................................................ 26 0 3 2.67 8 0 0 6 2 0 0 0 0 0 0 0 0
........................................................................TATTGGTCGGTAGCTTTCAGG............................................................................................................................................................. 21 0 3 2.67 8 1 0 1 0 0 5 0 1 0 0 0 0
..................................................................TAGGCTTATTGGTCGGTAGCT................................................................................................................................................................... 21 0 2 2.50 5 2 0 1 0 2 0 0 0 0 0 0 0
...............................................TCTTGGACAAACCGCTTAATAGGCTT................................................................................................................................................................................. 26 1 2 2.50 5 0 0 4 1 0 0 0 0 0 0 0 0
.................................................TTGGACAATCCGCTTAATAGGCTT................................................................................................................................................................................. 24 0 2 2.50 5 1 0 3 0 1 0 0 0 0 0 0 0
........................................TCCAGAATCTTGGACAATCCGCTT.......................................................................................................................................................................................... 24 0 2 2.50 5 0 1 0 3 0 1 0 0 0 0 0 0
.....................................TTTTCCAGAATCTTGGACAATCCCACT.......................................................................................................................................................................................... 27 3 2 2.50 5 0 2 0 1 2 0 0 0 0 0 0 0
..............................................ATCTTGGACAATCCGCTTAATAGGCTA................................................................................................................................................................................. 27 1 2 2.50 5 0 0 5 0 0 0 0 0 0 0 0 0
..................................................TGGACAATCCGCTTAATAGGCTTATTGGT........................................................................................................................................................................... 29 0 2 2.50 5 1 0 0 2 2 0 0 0 0 0 0 0
..........................................CAGAATCTTGGACAATCCGCT........................................................................................................................................................................................... 21 0 2 2.50 5 3 1 0 0 0 1 0 0 0 0 0 0
...........................................AGAATCTTGGACAAACCGCTTAATAGGC................................................................................................................................................................................... 28 1 2 2.50 5 1 0 3 0 1 0 0 0 0 0 0 0
..........................................CAGAATCTTGGACAAACCGCTT.......................................................................................................................................................................................... 22 1 2 2.50 5 4 1 0 0 0 0 0 0 0 0 0 0
....................................................................GGCTTATTGGTCGGTAGCTTTCAGG............................................................................................................................................................. 25 0 3 2.33 7 0 0 5 2 0 0 0 0 0 0 0 0
........................................................................TATTGGTCGGTAGCTTTCAGGGTA.......................................................................................................................................................... 24 1 3 2.33 7 0 0 6 0 0 1 0 0 0 0 0 0
..................................................................TAGGCTTATTGGTCGGTAGC.................................................................................................................................................................... 20 0 2 2.00 4 0 0 0 0 0 4 0 0 0 0 0 0
...........................................................CGCTTAATAGGCTTATTGGTCGG........................................................................................................................................................................ 23 0 2 2.00 4 0 3 0 1 0 0 0 0 0 0 0 0
..................................................TGGACAATCCGCTTAATAGGCTTA................................................................................................................................................................................ 24 0 2 2.00 4 0 0 0 3 0 0 0 0 0 1 0 0
............................................GAATCTTGGACAATCCGCTTAATAGGCT.................................................................................................................................................................................. 28 0 2 2.00 4 0 0 1 2 1 0 0 0 0 0 0 0
..........................................CAGAATCTTGGACAAACCGCTTAAA....................................................................................................................................................................................... 25 2 2 2.00 4 1 0 3 0 0 0 0 0 0 0 0 0
..........................................................................TTGGTCGGTAGCTTTCAGGGTT.......................................................................................................................................................... 22 0 3 2.00 6 0 3 0 1 0 0 0 2 0 0 0 0
..............................................ATCTTGGACAAACCGCTTAATAGGCA.................................................................................................................................................................................. 26 2 2 2.00 4 0 0 4 0 0 0 0 0 0 0 0 0
...............................................TCTTGGACAATCCGCTTAATAGGCTA................................................................................................................................................................................. 26 1 2 2.00 4 0 0 4 0 0 0 0 0 0 0 0 0
.................................................TTGGACAATCCGCTTAATAGG.................................................................................................................................................................................... 21 0 2 2.00 4 3 0 1 0 0 0 0 0 0 0 0 0
........................................TCCAGAATCTTGGACAAACCGCT........................................................................................................................................................................................... 23 1 2 2.00 4 0 1 0 2 1 0 0 0 0 0 0 0
........................................................................TATTGGTCGGTAGCTTTCAGGGTTTAA....................................................................................................................................................... 27 1 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0
.................................................TTGGACAATCCGCTTAATAGGC................................................................................................................................................................................... 22 0 2 2.00 4 1 1 0 0 2 0 0 0 0 0 0 0
...........................................................................TGGTCGGTAGCTTTCAGGGT........................................................................................................................................................... 20 0 3 2.00 6 0 1 4 1 0 0 0 0 0 0 0 0
........................................TCCAGAATCTTGGACAATCCGCTTA......................................................................................................................................................................................... 25 0 2 2.00 4 1 1 0 1 1 0 0 0 0 0 0 0
.................................................TTGGACAAACCGCTTAATAGGCTTAA............................................................................................................................................................................... 26 2 2 2.00 4 0 0 3 0 0 0 0 1 0 0 0 0
....................................TTTTTCCAGAATCTTGGACAATCCGCT........................................................................................................................................................................................... 27 0 2 2.00 4 0 2 0 1 0 1 0 0 0 0 0 0
.......................................TTCCAGAATCTTGGACAATCCGCTT.......................................................................................................................................................................................... 25 0 2 2.00 4 2 0 0 1 1 0 0 0 0 0 0 0
..................................................................TAGGCTTATTGGTCGGTAGCTTTAA............................................................................................................................................................... 25 1 2 2.00 4 0 0 4 0 0 0 0 0 0 0 0 0
CATTTCATTAAAGCTAATGG...................................................................................................................................................................................................................................... 20 0 13 1.69 22 0 0 0 0 0 0 0 0 0 0 22 0
.........................................CCAGAATCTTGGACAATCCGCTTAA........................................................................................................................................................................................ 25 0 2 1.50 3 0 0 1 1 0 1 0 0 0 0 0 0
..........................................CAGAATCTTGGACAAACCGCTTAATAA..................................................................................................................................................................................... 27 2 2 1.50 3 0 0 3 0 0 0 0 0 0 0 0 0
.................................................................ATAGGCTTATTGGTCGGTAGC.................................................................................................................................................................... 21 0 2 1.50 3 0 0 0 0 0 2 0 1 0 0 0 0
.................................................TTGGACAAACCGCTTAATAGGCTTATT.............................................................................................................................................................................. 27 1 2 1.50 3 2 0 0 1 0 0 0 0 0 0 0 0
................................................CTTGGACAATCCGCTTAATAGGCTTA................................................................................................................................................................................ 26 0 2 1.50 3 0 2 0 1 0 0 0 0 0 0 0 0
.................................................TTGGACAAACCGCTTAATAGGC................................................................................................................................................................................... 22 1 2 1.50 3 0 0 1 0 2 0 0 0 0 0 0 0
.........................................CCAGAATCTTGGACAAACCGCTTAATA...................................................................................................................................................................................... 27 1 2 1.50 3 1 0 2 0 0 0 0 0 0 0 0 0
...........................................................CGCTTAATAGGCTTATTGGTCGGTA...................................................................................................................................................................... 25 0 2 1.50 3 0 0 3 0 0 0 0 0 0 0 0 0
..............................................ATCTTGGACAAACCGCTTAATAGGCTTA................................................................................................................................................................................ 28 1 2 1.50 3 0 0 3 0 0 0 0 0 0 0 0 0
.........................................CCAGAATCTTGGACAAACCGCTTAAT....................................................................................................................................................................................... 26 1 2 1.50 3 0 1 2 0 0 0 0 0 0 0 0 0
...............................................................TAATAGGCTTATTGGTCGGTAGCTTTC................................................................................................................................................................ 27 0 2 1.50 3 0 0 1 0 0 0 0 2 0 0 0 0
...........................................................CGCTTAATAGGCTTATTGGTCGGTAG..................................................................................................................................................................... 26 0 2 1.50 3 0 0 1 0 1 0 0 1 0 0 0 0
.........................................CCAGAATCTTGGACAATCCGCTTAATA...................................................................................................................................................................................... 27 0 2 1.50 3 0 2 1 0 0 0 0 0 0 0 0 0
..................................................................TAGGCTTATTGGTCGGTAGCTTTCAGGGTT.......................................................................................................................................................... 30 0 2 1.50 3 2 1 0 0 0 0 0 0 0 0 0 0
...............................................................TAATAGGCTTATTGGTCGGT....................................................................................................................................................................... 20 0 2 1.50 3 0 0 0 1 0 2 0 0 0 0 0 0
.................................................TTGGACAATCCGCTTAATAGGCTTATTGGT........................................................................................................................................................................... 30 0 2 1.50 3 2 1 0 0 0 0 0 0 0 0 0 0
..............................................................TTAATAGGCTTATTGGTCGGTAGC.................................................................................................................................................................... 24 0 2 1.50 3 0 1 0 1 0 1 0 0 0 0 0 0
....................................................................GGCTTATTGGTCGGTAGCTTT................................................................................................................................................................. 21 0 3 1.33 4 0 0 1 0 0 0 0 3 0 0 0 0
.......................................................................................................................................................................................................TAAATTGTACAAAACTCGAAC.............................. 21 2 3 1.33 4 0 0 0 0 4 0 0 0 0 0 0 0
...................................................................AGGCTTATTGGTCGGTAGCTTTCAGG............................................................................................................................................................. 26 0 3 1.33 4 0 2 0 1 1 0 0 0 0 0 0 0
...........................................AGAATCTTGGACAATCCGCTTAATAGGC................................................................................................................................................................................... 28 0 2 1.00 2 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................AGTTTTTATAACTGTGGGTAG........................................................................................... 21 3 2 1.00 2 0 0 0 0 0 0 0 2 0 0 0 0
........................................TCCAGAATCTTGGACAATCCGCTTAA........................................................................................................................................................................................ 26 0 2 1.00 2 1 0 1 0 0 0 0 0 0 0 0 0
........................................................ATCCGCTTAATAGGCTTATTGGTCGGT....................................................................................................................................................................... 27 0 2 1.00 2 0 0 1 0 0 0 0 1 0 0 0 0
...........................................................................TGGTCGGTAGCTTTCAGGGTT.......................................................................................................................................................... 21 0 3 1.00 3 0 0 1 0 1 1 0 0 0 0 0 0
..............................................ATCTTGGACAATCCGCTTAATAGGCAA................................................................................................................................................................................. 27 2 2 1.00 2 0 0 1 1 0 0 0 0 0 0 0 0
.........................................CCAGAATCTTGGACAATCCGCTTAATAG..................................................................................................................................................................................... 28 0 2 1.00 2 0 1 1 0 0 0 0 0 0 0 0 0
.................................................TTGGACAAACCGCTTAATAGGCTA................................................................................................................................................................................. 24 2 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0
...........................................................................TGGTCGGTGGCTTTCAGGGTTT......................................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
..................................................TGGACAAACCGCTTAATAGGCTTATTGG............................................................................................................................................................................ 28 1 2 1.00 2 0 1 0 0 1 0 0 0 0 0 0 0
......................................TTTCCAGAATCTTGGACAAACCGCTT.......................................................................................................................................................................................... 26 1 2 1.00 2 0 1 0 1 0 0 0 0 0 0 0 0
..........................................CAGAATCTTGGACAATCCGCTT.......................................................................................................................................................................................... 22 0 2 1.00 2 0 1 0 0 1 0 0 0 0 0 0 0
...........................................................................TGGTCGGTAGCTTTCAGGGTTTATCAGG................................................................................................................................................... 28 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................TTTCCAGAATCTTGGACAAACCGCT........................................................................................................................................................................................... 25 1 2 1.00 2 0 0 0 0 2 0 0 0 0 0 0 0
.........................................................TCCGCTTAATAGGCTTATTGGTCGGTA...................................................................................................................................................................... 27 0 2 1.00 2 0 1 1 0 0 0 0 0 0 0 0 0
............................................GAATCTTGGACAAACCGCTTAATAGG.................................................................................................................................................................................... 26 1 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...............................................TCTTGGACAAACCGCTTAATAGGCTAA................................................................................................................................................................................ 27 2 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.................................................TTGGACAAACCGCTTAATAGGCTTATA.............................................................................................................................................................................. 27 2 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0
............................................GAATCTTGGACAAACCGCTTAATAGGCT.................................................................................................................................................................................. 28 1 2 1.00 2 0 0 1 1 0 0 0 0 0 0 0 0
..................................................TGGACAATCCGCTTAATAGGCT.................................................................................................................................................................................. 22 0 2 1.00 2 0 0 0 1 0 1 0 0 0 0 0 0
..................................................TGGACAATCCGCTTAATAGGCTTAT............................................................................................................................................................................... 25 0 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0 0
.........................................CCAGAATCTTGGACAATCCGCT........................................................................................................................................................................................... 22 0 2 1.00 2 0 0 0 2 0 0 0 0 0 0 0 0
.........................................CCAGAATCTTGGACAAACCGCTTAATAGGC................................................................................................................................................................................... 30 1 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0
..............................................ATCTTGGACAAACCGCTTAATAGGCAA................................................................................................................................................................................. 27 3 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CAGTTGGCTTCTGCTGGCA............ 19 2 3 1.00 3 0 0 0 0 3 0 0 0 0 0 0 0
...............................................................TAATAGGCTTATTGGTCGGTAGCG................................................................................................................................................................... 24 1 2 1.00 2 0 0 0 0 0 0 2 0 0 0 0 0
...........................................................CGCTTAATAGGCTTATTGGTCGGTAGCA................................................................................................................................................................... 28 1 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.................................................TTGGACAAACCGCTTAATAGGCA.................................................................................................................................................................................. 23 2 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0
..........................................CAGAATCTTGGACAAACCGCTTA......................................................................................................................................................................................... 23 1 2 1.00 2 1 0 0 1 0 0 0 0 0 0 0 0
..........................................CAGAATCTTGGACAATCCGCTTAAA....................................................................................................................................................................................... 25 1 2 1.00 2 1 0 0 0 1 0 0 0 0 0 0 0
............................................GAATCTTGGACAAACCGCTTAATAGGC................................................................................................................................................................................... 27 1 2 1.00 2 0 0 1 0 1 0 0 0 0 0 0 0
..................................................................TATGCTTATTGGTCGGTAGCTTTCAGGG............................................................................................................................................................ 28 1 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0
........................................TCCAGAATCTTGGACAAACCGCTTAATA...................................................................................................................................................................................... 28 1 2 1.00 2 0 0 0 0 2 0 0 0 0 0 0 0
................................................CTTGGACAAACCGCTTAATAGGCTTAT............................................................................................................................................................................... 27 1 2 1.00 2 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................TTATTGGTCGGTAGCTTTCAGGGA........................................................................................................................................................... 24 1 3 1.00 3 0 0 3 0 0 0 0 0 0 0 0 0
..................................................................TAGGCTTATTGGTCGGT....................................................................................................................................................................... 17 0 2 1.00 2 0 0 0 0 0 2 0 0 0 0 0 0
.....................................TTTTCCAGAATCTTGGACAAACCGCT........................................................................................................................................................................................... 26 1 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0 0
..............................................ATCTTGGACAATCCGCTTAATAGGCA.................................................................................................................................................................................. 26 1 2 1.00 2 0 1 1 0 0 0 0 0 0 0 0 0
........................................TCCAGAATCTTGGACAAACCGCTT.......................................................................................................................................................................................... 24 1 2 1.00 2 0 0 0 0 2 0 0 0 0 0 0 0
..............................................................TTAATAGGCTTATTGGTCGGTAGCT................................................................................................................................................................... 25 0 2 1.00 2 0 1 0 1 0 0 0 0 0 0 0 0
..................................................TGGACAAACCGCTTAATAGGCTTA................................................................................................................................................................................ 24 1 2 1.00 2 0 0 0 0 0 0 0 2 0 0 0 0
..................................................................TAGGCTTATTGGTCGGTAGCTTTT................................................................................................................................................................ 24 1 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0
...............................................TCTTGGACAATCCGCTTAATAG..................................................................................................................................................................................... 22 0 2 1.00 2 1 0 0 1 0 0 0 0 0 0 0 0
...........................................AGAATCTTGGACAAACCGCTTAATAGG.................................................................................................................................................................................... 27 1 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0
........................................................................TATTGGTCGGTAGCT................................................................................................................................................................... 15 0 3 1.00 3 0 0 0 0 0 3 0 0 0 0 0 0
........................................................................TATTGGTCGGTAGCTTTCAGGGTTT......................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................TGGACAATCCGCTTAATAGGCTTATTG............................................................................................................................................................................. 27 0 2 1.00 2 0 0 0 2 0 0 0 0 0 0 0 0
.......................................................................TTATTGGTCGGTAGCTTTCAG.............................................................................................................................................................. 21 0 3 1.00 3 0 0 2 0 0 0 0 1 0 0 0 0
..............................................ATCTTGGACAATCCGCTTAATAGGCTTAT............................................................................................................................................................................... 29 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..........................................CAGAATCTTGGACAAACCGCTTAAAA...................................................................................................................................................................................... 26 2 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0
................................................CTTGGACAATCCGCTTAATAGGCT.................................................................................................................................................................................. 24 0 2 1.00 2 0 1 0 0 0 0 1 0 0 0 0 0
..........................................CAGAATCTTGGACAATCCGAT........................................................................................................................................................................................... 21 1 2 1.00 2 0 1 0 1 0 0 0 0 0 0 0 0
..................................................TGGACAATCCGCTTAATAGGCTTATTGGA........................................................................................................................................................................... 29 1 2 1.00 2 0 0 0 0 2 0 0 0 0 0 0 0
...................................................................AGGCTTATTGGTCGGTAGCTT.................................................................................................................................................................. 21 0 3 0.67 2 0 0 1 0 0 0 0 1 0 0 0 0
...................................................................AGGCTTATTGGTCGGTAGCTTTCAG.............................................................................................................................................................. 25 0 3 0.67 2 0 0 1 0 1 0 0 0 0 0 0 0
...........................................................................TGGTCGGTAGCTTTCAGGGTA.......................................................................................................................................................... 21 1 3 0.67 2 0 0 2 0 0 0 0 0 0 0 0 0
.....................................................................GCTTATTGGTCGGTAGCTTTCAGGG............................................................................................................................................................ 25 0 3 0.67 2 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................TTATTGGTCGGTAGCTTTCAGG............................................................................................................................................................. 22 0 3 0.67 2 0 0 2 0 0 0 0 0 0 0 0 0
........................................................................TATTGGTCGGTAGCTTTCAGGGC........................................................................................................................................................... 23 1 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................GGCTTATTGGTCGGTAGCTTTCAG.............................................................................................................................................................. 24 0 3 0.67 2 0 0 2 0 0 0 0 0 0 0 0 0
.......................................................................TTATTGGTCGGTAGCTTTCAGGGTTAA........................................................................................................................................................ 27 1 3 0.67 2 0 0 1 1 0 0 0 0 0 0 0 0
...................................................................AGGCTTATTGGTCGGTAGCTTT................................................................................................................................................................. 22 0 3 0.67 2 0 0 0 0 0 0 0 2 0 0 0 0
...............................................................TAATAGGCTTATTGGTCGGTAGG.................................................................................................................................................................... 23 1 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0
.............................................AATCTTGGACAAACCGCTTAATAGGCTA................................................................................................................................................................................. 28 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................CAGAATCTTGGACAATCCGCTTAT........................................................................................................................................................................................ 24 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................ATCTTGGACGATCCGCTTAATAGGC................................................................................................................................................................................... 25 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................AATAGGCTTATTGGTCGGTAG..................................................................................................................................................................... 21 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
.................................................TTGGACAATCCGCTTAATAGGCTTAAAA............................................................................................................................................................................. 28 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................TAGGCTTATTGGTCGGTAGCTTTCAGT............................................................................................................................................................. 27 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................TTCCAGAATCTTGGACAATCCGCTTAA........................................................................................................................................................................................ 27 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................CCAGAATCTTGGACAAACCGCTT.......................................................................................................................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................TTTGACAATCCGCTTAATAGGCTTA................................................................................................................................................................................ 25 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................GAGGCTTATTGGTCGGTAGCTTTCAGG............................................................................................................................................................. 27 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................TTTTTCCAGAATCTTGGACAAACCGC............................................................................................................................................................................................ 26 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................TTTCCGGAATCTTGGACAATCCGCT........................................................................................................................................................................................... 25 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................TTGGACAAGCCGCTTAATAGGCTTA................................................................................................................................................................................ 25 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
...............................................TCTTGGACCATCCGCTTAATAGG.................................................................................................................................................................................... 23 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................................TGGACAAACCGCTTAATAGGCTTATT.............................................................................................................................................................................. 26 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................TAGGCTTATTGGTCGGTAGCTTTCAGGT............................................................................................................................................................ 28 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
......................................TTTCCAGAATCTTGGACAAACCGC............................................................................................................................................................................................ 24 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................AGAATCTTGGACAATCCGCTTAATA...................................................................................................................................................................................... 25 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
..............................................ATCTTGGACAAACCGCCTAATAGGCT.................................................................................................................................................................................. 26 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................CAGAATCTTGGACAAACCGCTTAC........................................................................................................................................................................................ 24 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................GGACAATCCGCTTAATAGG.................................................................................................................................................................................... 19 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................TAGGCTTATTGGTCGGTAGCTTTTAGGGT........................................................................................................................................................... 29 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................TCCAGAATCTTGGACAATCCGCTTAATT...................................................................................................................................................................................... 28 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................TCAGAATCTTGGACAATCCGCTTAAT....................................................................................................................................................................................... 26 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................TTTCCAGAATCTTGGACAATCCCAC........................................................................................................................................................................................... 25 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................CTTGGACAAACCGCTTAATAGGCTT................................................................................................................................................................................. 25 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................TAATAGGCTTATTGGTCG......................................................................................................................................................................... 18 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
...............................................TCTTGGACAATCCGCTTAATAGGCC.................................................................................................................................................................................. 25 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
......................................TTTCCAGAATCTTGGACAATC............................................................................................................................................................................................... 21 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
...............................................TCTTGGACAAACCGCTTAATAGGCAA................................................................................................................................................................................. 26 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................CCAGAATCTTGGACAAACCGCTTAA........................................................................................................................................................................................ 25 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................CAGAATCTTGGACAATCCCACTA......................................................................................................................................................................................... 23 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................TTTTATAACTGTGGGTAGCCC........................................................................................ 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................TTTTTCCAGAATCTTGGACAATCCCACT.......................................................................................................................................................................................... 28 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................CCAGAATCTTGGACAATCCGCTT.......................................................................................................................................................................................... 23 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................TCTTGGACAATCCGCTTAATAGGCG.................................................................................................................................................................................. 25 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
...............................................TCTTGGACAAACCGCGTAATAGGCT.................................................................................................................................................................................. 25 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................AGAATCTTGGACAATCCG............................................................................................................................................................................................. 18 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................TAGGCTTATTGGTCGGTAGCTTTCATGG............................................................................................................................................................ 28 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................TTAATAGGCTTATTGGTCGGTAGCTT.................................................................................................................................................................. 26 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................CAGAATCTTGGACAATCCGCTTAATTCT.................................................................................................................................................................................... 28 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................CCAGAATCTTGGACAAACCGCT........................................................................................................................................................................................... 22 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................TCTTGGACAATCCGCTTAATAGGCTT................................................................................................................................................................................. 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................TAGGCTTATTGGTCGGTAG..................................................................................................................................................................... 19 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
..............................................ATCTTGGACAATCCGCT........................................................................................................................................................................................... 17 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
..........................................GAGAATCTTGGACAATCCGCTTAATAGGCT.................................................................................................................................................................................. 30 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................CCAGAATCTTGGACAATCCGCTTAATAGG.................................................................................................................................................................................... 29 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................CAGAATCTTGGACAATCCTCTTAATA...................................................................................................................................................................................... 26 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................TCCAGAATCTTGGACAAACCG............................................................................................................................................................................................. 21 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................TTGGACAAACCGCTTAATAGGCAA................................................................................................................................................................................. 24 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................CAGGCTTATTGGTCGGTAGCTTTCAGGG............................................................................................................................................................ 28 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................AAGGCTTATTGGTCGGTAGCTTTCAGGGT........................................................................................................................................................... 29 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................TCTTGGACAAACCGCTTAATAGGCTTAA............................................................................................................................................................................... 28 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................TAATAGGCTTATTGGTCGGTAGCTTTCAGGG............................................................................................................................................................ 31 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................TAGTCTTATTGGTCGGTAGCTTTCAGGG............................................................................................................................................................ 28 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................CAGAATCTTGGACAAACCGCTTAATAGGA................................................................................................................................................................................... 29 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................GTGGACAATCCGCTTAATAGGC................................................................................................................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................TCTTGGATAAACCGCTTAATAGGCT.................................................................................................................................................................................. 25 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................TTTCCAGAATCTTGGACAATCCGCTTA......................................................................................................................................................................................... 27 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................TCCAGAATCTTGGACAATCCGCTA.......................................................................................................................................................................................... 24 1 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0
......................................TGTCCAGAATCTTGGACAATCCGCT........................................................................................................................................................................................... 25 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................ATCTTGGACAAACCGCTTAATAGCC................................................................................................................................................................................... 25 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................TTTTGGACAATCCGCTTAATAGGCT.................................................................................................................................................................................. 25 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................TGGACAATCCGCTTAATAGGCTTATTGG............................................................................................................................................................................ 28 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................TAGGCTTATTGGTCGGTAGCTTA................................................................................................................................................................. 23 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................TGGACAAACCGCTTAATAGGCT.................................................................................................................................................................................. 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................TTAGACAATCCGCTTAATAGGCTTA................................................................................................................................................................................ 25 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................CAGAATCTTGGACAAACC.............................................................................................................................................................................................. 18 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................TTCCAGAATCTTGGACAATCCGCTTAAT....................................................................................................................................................................................... 28 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
...............................................TCTTGGAAAATCCGCTTAATAGGCT.................................................................................................................................................................................. 25 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................TCTTTGACAATCCGCTTAATAGGCT.................................................................................................................................................................................. 25 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................ATAGGCTTATTGGTCGGTA...................................................................................................................................................................... 19 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
...............................................TCTTGGACAATCCGCTTAAGAGGCTG................................................................................................................................................................................. 26 2 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0
...........................................................CGCTTAATAGGCTTATTGGTCGGT....................................................................................................................................................................... 24 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................AGAATCTTGGACAATCCGCTTAATAGGCA.................................................................................................................................................................................. 29 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................TTTTACAGAATCTTGGACAATCCGCT........................................................................................................................................................................................... 26 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................TCCGCTTAATAGGCTTATT.............................................................................................................................................................................. 19 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
...............................................TCTTGGACAATCCTCTTAATAGGCTTAT............................................................................................................................................................................... 28 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
........................................GCCAGAATCTTGGACAAACCGCT........................................................................................................................................................................................... 23 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................ATCTTGGACAAACCGCTTAAT....................................................................................................................................................................................... 21 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0
.................................................TGGGACAAACCGCTTAATAGGCTTATTGGT........................................................................................................................................................................... 30 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................AATCCGCTTAATAGGCTTA................................................................................................................................................................................ 19 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
..........................................CAGAATCTTGGACAATCCGCTTA......................................................................................................................................................................................... 23 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................TGGACAATCCTCTTAATAGGCTTATTGGT........................................................................................................................................................................... 29 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................TTTGGACAATCCGCTTAATAGGCTTA................................................................................................................................................................................ 26 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................GCTTGGACAATCCGCTTAATAGGC................................................................................................................................................................................... 24 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................AATCTTGGACAATCCGCTTAATAGGCT.................................................................................................................................................................................. 27 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................AGAATCTTGGACAAACCGCTTAATAGGGA.................................................................................................................................................................................. 29 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................TTTTGGACAAACCGCTTAATAGGCT.................................................................................................................................................................................. 25 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................TCTTGGACGATCCGCTTAATAGGCT.................................................................................................................................................................................. 25 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................TTTCCAGAATCTTGGACAATCCGCG........................................................................................................................................................................................... 25 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................TCTTGGACAATCCGTTTAATAGGC................................................................................................................................................................................... 24 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................TCCAGAATCTTGGACAAACCGCAA.......................................................................................................................................................................................... 24 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................ATGTTGGACAATCCGCTTAATAGGCTA................................................................................................................................................................................. 27 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................AGAATCTTGGACAATCCGCTTAAT....................................................................................................................................................................................... 24 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................TCCGCTTAATAGGCTTATTGGTCGGTAGC.................................................................................................................................................................... 29 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................TAATAGGCTTATTGGTCGGTAGCC................................................................................................................................................................... 24 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
.................................................TTGGACAATCCGCTTAATAGGCTTATA.............................................................................................................................................................................. 27 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................TATAATCTTGGACAAACCGCTTAATAGGCT.................................................................................................................................................................................. 30 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................CAGAATCTTGGACAATCCGCTTAATAGGCA.................................................................................................................................................................................. 30 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................ACCGCTTAATAGGCTTATTGGTCG......................................................................................................................................................................... 24 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................TCCAGAATCTTGGACAACCCGCT........................................................................................................................................................................................... 23 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................CTTGGACAATCCGCTTAATAGGCC.................................................................................................................................................................................. 24 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
..........................................CAGAATCTTGGACAATCCGCTTTT........................................................................................................................................................................................ 24 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................GAGGCTTATTGGTCGGTAGCTTTCAGGG............................................................................................................................................................ 28 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................AGAATCTTGGACAATCCGCTTAATAGG.................................................................................................................................................................................... 27 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................TTAATAGGCTTATTGGTCGGT....................................................................................................................................................................... 21 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0
.................................................TTGAACAAACCGCTTAATAGGCTTAA............................................................................................................................................................................... 26 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................TTCCAGAATCTTGGACAAACCGCT........................................................................................................................................................................................... 24 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GTAAAGTAATTTCGATTACCATCNNNNNNNNTAATTAAAAAGGTCTTAGAACCTGTTAGGCGAATTATCCGAATAACCAGCCATCGAAAGTCCCAAATACTAGTGAAATTTCGATTAACAATACTGTAACAAAATTTGTAAAAAATATTGAAAACCATCGAGTATAATGATTACCCTGTAACATAGGTTTTAAGAAATTCTTTAACTTGTTTTGAGCTTGTCAAGCGAAGACGACGGTTCCTATGCTCCC
**************************************************((((((((((........))(((((((((..((((((.((((((.((((((....((((((((....(((....)))..))))))))......)))))).)))))).)))).))...)))))))))..))))..))))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 O001
Testis
 O002
Head
 M053
female body
 M025
embryo
 SRR902009
testis
 M023
head
 GSM343915
embryo
 M024
male body
...............................................AGAACCTGTTAGGCGAATTATCCGAAT................................................................................................................................................................................ 27 0 2 171.50 343 145 86 9 61 40 2 0 0 0 0 0 0 0 0
..................................................ACCTGTTAGGCGAATTATCCGAATAA.............................................................................................................................................................................. 26 0 2 105.50 211 57 135 5 5 9 0 0 0 0 0 0 0 0 0
...............................................AGAACCTGTTAGGCGAATTATCCGA.................................................................................................................................................................................. 25 0 2 37.50 75 45 19 2 3 6 0 0 0 0 0 0 0 0 0
....................................AAAAAGGTCTTAGAACCTGTTAGGCGAAT......................................................................................................................................................................................... 29 0 2 23.50 47 25 10 0 6 6 0 0 0 0 0 0 0 0 0
........................................AGGTCTTAGAACCTGTTAGGCGAAT......................................................................................................................................................................................... 25 0 2 22.50 45 23 13 2 4 2 0 0 0 1 0 0 0 0 0
...............................................AGAACCTGTTAGGCGAATTATCCGAA................................................................................................................................................................................. 26 0 2 20.50 41 29 5 5 0 1 0 0 0 1 0 0 0 0 0
...................................................CCTGTTAGGCGAATTATCCGAATAA.............................................................................................................................................................................. 25 0 2 18.00 36 6 13 3 4 10 0 0 0 0 0 0 0 0 0
...............................................AGAACCTGTTTGGCGAATTATCCGAAT................................................................................................................................................................................ 27 1 2 13.00 26 10 9 0 3 4 0 0 0 0 0 0 0 0 0
............................................CTTAGAACCTGTTAGGCGAATTAT...................................................................................................................................................................................... 24 0 2 12.00 24 8 4 1 7 4 0 0 0 0 0 0 0 0 0
..................................................ACCTGTTAGGCGAATTATCCGAAT................................................................................................................................................................................ 24 0 2 11.50 23 6 4 12 0 1 0 0 0 0 0 0 0 0 0
...............................................AGAACCTGTTAGGCGAATTATCCGAATAA.............................................................................................................................................................................. 29 0 2 10.50 21 3 18 0 0 0 0 0 0 0 0 0 0 0 0
..............................................TAGAACCTGTTAGGCGAATTATCCGA.................................................................................................................................................................................. 26 0 2 10.50 21 5 0 5 0 0 11 0 0 0 0 0 0 0 0
..............................................TAGAACCTGTTAGGCGAATTATCCGAAT................................................................................................................................................................................ 28 0 2 9.00 18 6 5 0 1 3 2 0 0 0 0 1 0 0 0
........................................AGGTCTTAGAACCTGTTAGGCGAATT........................................................................................................................................................................................ 26 0 2 8.50 17 10 1 3 2 1 0 0 0 0 0 0 0 0 0
........................................................TAGGCGAATTATCCGAATAACCAGCC........................................................................................................................................................................ 26 0 2 7.50 15 0 1 12 0 2 0 0 0 0 0 0 0 0 0
...................................TAAAAAGGTCTTAGAACCTGTTAGGCGAAT......................................................................................................................................................................................... 30 0 2 7.00 14 9 5 0 0 0 0 0 0 0 0 0 0 0 0
.....................................AAAAGGTCTTAGAACCTGTTAGGCGAAT......................................................................................................................................................................................... 28 0 2 7.00 14 7 4 1 0 2 0 0 0 0 0 0 0 0 0
...............................TAATTAAAAAGGTCTTAGAACCTGT.................................................................................................................................................................................................. 25 0 2 6.00 12 0 0 11 1 0 0 0 0 0 0 0 0 0 0
.............................................TTAGAACCTGTTAGGCGAATTATCCGAAT................................................................................................................................................................................ 29 0 2 6.00 12 10 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................GAACCTGTTAGGCGAATTATCCGAAT................................................................................................................................................................................ 26 0 2 5.00 10 2 0 0 5 3 0 0 0 0 0 0 0 0 0
.................................................TACCTGTTAGGCGAATTATCCGAATAA.............................................................................................................................................................................. 27 1 2 4.50 9 2 4 0 2 1 0 0 0 0 0 0 0 0 0
................................................GAACCTGTTAGGCGAATTATCCGAATAA.............................................................................................................................................................................. 28 0 2 4.50 9 3 3 0 0 3 0 0 0 0 0 0 0 0 0
...........................................................GCGAATTATCCGAATAACCAGCC........................................................................................................................................................................ 23 0 2 4.50 9 0 0 1 0 0 0 8 0 0 0 0 0 0 0
.............................................TTAGAACCTGTTAGGCGAATTATCCGA.................................................................................................................................................................................. 27 0 2 4.50 9 5 2 0 0 2 0 0 0 0 0 0 0 0 0
.........................................................AGGCGAATTATCCGAATAACCAGCC........................................................................................................................................................................ 25 0 2 4.50 9 0 2 7 0 0 0 0 0 0 0 0 0 0 0
....................................................CTGTTAGGCGAATTATCCGAATAA.............................................................................................................................................................................. 24 0 2 4.00 8 2 1 0 3 1 1 0 0 0 0 0 0 0 0
.........................................................AGGCGAATTATCCGAATA............................................................................................................................................................................... 18 0 2 4.00 8 0 0 0 0 0 0 0 8 0 0 0 0 0 0
..................................................ACCTGTTAGGCGAATTATCCGAA................................................................................................................................................................................. 23 0 2 4.00 8 5 1 1 0 0 0 0 0 1 0 0 0 0 0
...................................TAAAAAGGTCTTAGAACCTGTTAGGGT............................................................................................................................................................................................ 27 2 2 4.00 8 8 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................GAACCTGTTAGGCGAATTATCCGA.................................................................................................................................................................................. 24 0 2 4.00 8 7 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................AAAGGTCTTAGAACCTGTTAGGCG............................................................................................................................................................................................ 24 0 2 3.00 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................CTTAGAACCTGTTAGGCGAATTATC..................................................................................................................................................................................... 25 0 2 3.00 6 5 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................AGGTCTTAGAACCTGTTAGGCGAATTAT...................................................................................................................................................................................... 28 0 2 3.00 6 5 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................GAACCTGTTAGGCGAATTATCCGAA................................................................................................................................................................................. 25 0 2 3.00 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................AAGGTCTTAGAACCTGTTTGGCGAAT......................................................................................................................................................................................... 26 1 2 3.00 6 2 1 0 0 0 3 0 0 0 0 0 0 0 0
.............................................TTAGAACCTGTTAGGCGAATTAT...................................................................................................................................................................................... 23 0 2 2.50 5 3 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................AGGCGAATTATCCGAATAACCAGCCAT...................................................................................................................................................................... 27 0 2 2.50 5 2 0 1 1 1 0 0 0 0 0 0 0 0 0
........................................AGGTCTTAGAACCTGTTTGGCGAAT......................................................................................................................................................................................... 25 1 2 2.50 5 1 1 0 0 3 0 0 0 0 0 0 0 0 0
.....................................AAAAGGTCTTAGAACCTGTTAGGCG............................................................................................................................................................................................ 25 0 2 2.50 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................AAAGGTCTTAGAACCTGTTTGGCGAAT......................................................................................................................................................................................... 27 1 2 2.50 5 1 1 1 0 2 0 0 0 0 0 0 0 0 0
....................................AAAAAGGTCTTAGAACCTGTTAGGCG............................................................................................................................................................................................ 26 0 2 2.50 5 4 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................AGGTCTTAGAACCTGTTTGGCGAATT........................................................................................................................................................................................ 26 1 2 2.50 5 2 2 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................AGGCGAATTATCCGAATAACCAGC......................................................................................................................................................................... 24 0 2 2.50 5 4 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................AAAGGTCTTAGAACCTGTTAGGCGAAT......................................................................................................................................................................................... 27 0 2 2.00 4 1 2 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................TGGCGAATTATCCGAATAACCAGCC........................................................................................................................................................................ 25 1 2 2.00 4 0 3 1 0 0 0 0 0 0 0 0 0 0 0
...............................................AGAACCTGTTAGGCGAATTATCCGAATA............................................................................................................................................................................... 28 0 2 2.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................TAATTAAAAAGGTCTTAGAACCTGTT................................................................................................................................................................................................. 26 0 2 2.00 4 1 0 3 0 0 0 0 0 0 0 0 0 0 0
..............................................TAGAACCTGTTAGGCGAATTATCCGAA................................................................................................................................................................................. 27 0 2 1.50 3 0 1 0 0 0 1 0 0 1 0 0 0 0 0
.......................................................TTAGGCGAATTATCCGAATAA.............................................................................................................................................................................. 21 0 2 1.50 3 1 0 0 0 0 0 0 0 0 2 0 0 0 0
.................................................AACCTGTTAGGCGAATTATCCGAATAA.............................................................................................................................................................................. 27 0 2 1.50 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0
...................................TAAAAAGGTCTTAGAACCTGTTAGGGTGA.......................................................................................................................................................................................... 29 3 2 1.50 3 2 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................GAACCTGTTAGGCGAATTATC..................................................................................................................................................................................... 21 0 2 1.50 3 0 0 0 0 0 0 0 0 0 1 2 0 0 0
........................................................TAGGCGAATTATCCGAATAACCAGCCAT...................................................................................................................................................................... 28 0 2 1.50 3 1 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................AGGCGAATTATCCGAATAACCAG.......................................................................................................................................................................... 23 0 2 1.50 3 1 0 0 2 0 0 0 0 0 0 0 0 0 0
.............................................................................CAGCCATCGAAAGTCCCA........................................................................................................................................................... 18 0 3 1.33 4 0 0 4 0 0 0 0 0 0 0 0 0 0 0
...................................................CCTGTTAGGCGAATTATCCGAAT................................................................................................................................................................................ 23 0 2 1.00 2 0 0 0 1 0 1 0 0 0 0 0 0 0 0
...............................................TGAACCTGTTAGGCGAATTATCCGAATAA.............................................................................................................................................................................. 29 1 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.................................................AACCTGTTAGGCGAATTATCCGAA................................................................................................................................................................................. 24 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................TGTTAGGCGAATTATCCGAATAA.............................................................................................................................................................................. 23 0 2 1.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0
.................................................CACCTGTTAGGCGAATTATCCGAATAA.............................................................................................................................................................................. 27 1 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
............................................CTTAGAACCTGTTAGGCGAATTATCC.................................................................................................................................................................................... 26 0 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................TAAAAAGGTCTTAGAACCTGTTTGGCGAAT......................................................................................................................................................................................... 30 1 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................AGGCGAACTATCCGAATAACCAGCCATCGA................................................................................................................................................................... 30 1 2 1.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0
.........................................................AGGCGAATTATCCGAATAACCAGCCATCGA................................................................................................................................................................... 30 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................AACCTGTTAGGCGAATTATCCGA.................................................................................................................................................................................. 23 0 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................AGAATCTGTTAGGCGAATTATCCGAAT................................................................................................................................................................................ 27 1 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TTAAAAAGGTCTTAGAACCTGTTAGGGT............................................................................................................................................................................................ 28 2 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................TATCCGAATAACCAGCCATCGAAAGT............................................................................................................................................................... 26 0 2 1.00 2 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................TAAAAAGGTCTTAGAACCTGTTAGGCGA........................................................................................................................................................................................... 28 0 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................AGAACCTGTTAGGCGAATTATCCG................................................................................................................................................................................... 24 0 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
..................................................ACCTGTTAGGCGAATTATC..................................................................................................................................................................................... 19 0 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
......................................AAAGGTCTTAGAACCTGTTAGGCGA........................................................................................................................................................................................... 25 0 2 1.00 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0
........................................................TAGGCGAATTATCCGAATAAC............................................................................................................................................................................. 21 0 2 1.00 2 0 0 0 0 0 0 0 0 0 0 0 1 0 1
.......................................................TTAGGCGAATTATCCGAATAAC............................................................................................................................................................................. 22 0 2 1.00 2 0 0 1 0 0 0 0 0 0 0 0 0 0 1
........................................AGGTCTTAGAACCTGTTAGGCG............................................................................................................................................................................................ 22 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TCTGTTAGGCGAATTATCCGAATAA.............................................................................................................................................................................. 25 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................AAGGTCTTAGAACCTGTTAGGCGAAT......................................................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................GAACCTGTTAGGCGAATTATCC.................................................................................................................................................................................... 22 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...............................................AGAACCTGTTTGGCGAATTATCCGAA................................................................................................................................................................................. 26 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................AGAACCTGTTTGGCGAATTATCCGAATAA.............................................................................................................................................................................. 29 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................GGCGAATTATCCGAATAACCAGCC........................................................................................................................................................................ 24 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................TAAAAAGGTCTTAGAACCTGT.................................................................................................................................................................................................. 21 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................TTAAAAAGGTCTTAGAACCTGTTAG............................................................................................................................................................................................... 25 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................AAAAGGTCTTAGAACCTGTTAGGGT............................................................................................................................................................................................ 25 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................GAACCTGTTAGGCGAATTATCCG................................................................................................................................................................................... 23 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................AAAAAAGGTCTTAGAACCTGTTAGGCGAAT......................................................................................................................................................................................... 30 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................AGGCGAATTATCCGAATAACCAGAC........................................................................................................................................................................ 25 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................TAGGCGAATTATCCGAATAACC............................................................................................................................................................................ 22 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
............................................................CGAATTATCCGAATAACCAGCCAT...................................................................................................................................................................... 24 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................AGAACCTGTTAGGCGAATTAT...................................................................................................................................................................................... 21 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................TAAAAAGGTCTTAGAACCTGTTAGGC............................................................................................................................................................................................. 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TTAAAAAGGTCTTAGAACCTGTTAGGCGAAT......................................................................................................................................................................................... 31 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................CTAAAAAGGTCTTAGAACCTGTTAGGCGAAT......................................................................................................................................................................................... 31 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................TATAAGGTCTTAGAACCTGTTAGGCG............................................................................................................................................................................................ 26 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................TAAAAAGGTCTTAGA........................................................................................................................................................................................................ 15 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................AGGTCTTAGAACCGGTTAGGCGAAT......................................................................................................................................................................................... 25 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................TAATTAAAAAGGTCTTAGAACC..................................................................................................................................................................................................... 22 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................TTAGAACCTGTTAGGCGAATT........................................................................................................................................................................................ 21 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................GGCGAATTATCCGAATAACCAGCCAT...................................................................................................................................................................... 26 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................AGGTCTTAGAACCTGTTAGG.............................................................................................................................................................................................. 20 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..........................................GTCTTAGAACCTGTTAGGCGAATTAT...................................................................................................................................................................................... 26 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................AAAGGTCTTAGAACCTGTTAGTCG............................................................................................................................................................................................ 24 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................AAAGGTCTTAGAACCTGTTAGGC............................................................................................................................................................................................. 23 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................ACCTGTTAGGCGAATTATCCGAATAAC............................................................................................................................................................................. 27 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................ATACCTGTTAGGCGAATTATCCGAATAA.............................................................................................................................................................................. 28 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................TAGGTCTTAGAACCTGTTAGGCG............................................................................................................................................................................................ 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................AACCTGTTAGGCGAATTATCCGAAT................................................................................................................................................................................ 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................AAAAAGGTCTTAGAACCTGTTAGGCGAA.......................................................................................................................................................................................... 28 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................CTTAGAACCTGTTAGGCGAAT......................................................................................................................................................................................... 21 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................TAGAACCTGTTTGGCGAATAATCCGAAT................................................................................................................................................................................ 28 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................AAGGTCTTAGAACCTGTTTGGCGAATTAT...................................................................................................................................................................................... 29 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................TAGAACCTGTTAGGCGAATTATCC.................................................................................................................................................................................... 24 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................GGCGAATTATCCGAATGA.............................................................................................................................................................................. 18 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................AAAAAGGTCTTAGAACCTGTTAGGCGA........................................................................................................................................................................................... 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................AGAACTTGTTAGGCGAATTATCCGAAT................................................................................................................................................................................ 27 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................TTAAAAAGGTCTTAGAACCTGTTAGGCGA........................................................................................................................................................................................... 29 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................AAAGGTCTTAGAACCTGTTAGGCGAATT........................................................................................................................................................................................ 28 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................AAAAGGTCTTAGAACCTGTT................................................................................................................................................................................................. 20 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................AGAACCTGCTAGGCGAATTATCCGAAT................................................................................................................................................................................ 27 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................AAGGTCTTAGAACCTGTTTGGCGAATT........................................................................................................................................................................................ 27 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TTAAAAAGGTCTTAGAACCTGTT................................................................................................................................................................................................. 23 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................TAGAACCTGTTAGGCGAATTATC..................................................................................................................................................................................... 23 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................CCTGTTAGGCGAATTATCGGAATAA.............................................................................................................................................................................. 25 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................AAAGGTTTTAGAACCTGTTAGGCGA........................................................................................................................................................................................... 25 1 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................AAAAAGGTTTTAGAACCTGTTAGGCGAAT......................................................................................................................................................................................... 29 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................CCAGTTAGGCGAATTATCCGAATAA.............................................................................................................................................................................. 25 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................TAATTGAAAAGGTCTTAGAACCTGT.................................................................................................................................................................................................. 25 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................ATTGTTAGGCGAATTATCCGAATAA.............................................................................................................................................................................. 25 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................GAACCTGTTAGGCGAATTATCCGAATA............................................................................................................................................................................... 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................AAGGTCTTAGAACCTGT.................................................................................................................................................................................................. 17 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................TAGAACCTGTTAGGCGAATTA....................................................................................................................................................................................... 21 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................CCTGTTAGGCGAATTATCCGAAGAA.............................................................................................................................................................................. 25 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................AACCTGTTAGGCGAATTATCCG................................................................................................................................................................................... 22 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................AGAACCTGTTAGGCGATTTATCCGAAT................................................................................................................................................................................ 27 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................TCTTAGAACCTGTTAG............................................................................................................................................................................................... 16 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................GAACCTGTTATGCGAATTATCCGAAT................................................................................................................................................................................ 26 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................AACCTGTTTGGCGAATTATCCGAA................................................................................................................................................................................. 24 1 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................TAAAAAAGGTCTTAGAACCTGT.................................................................................................................................................................................................. 22 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................TTAGAACCTGTTTGGCGAATTATC..................................................................................................................................................................................... 24 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................TAATTAAAAAGGTCTTAGAACCTT................................................................................................................................................................................................... 24 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................TAAAAAGGTCTTAGAACCTGTTAGGCG............................................................................................................................................................................................ 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................TAAAAAGGTCTTAGTACCTGTTAGGCGAAT......................................................................................................................................................................................... 30 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................AGAACCTGTTAGGCGAATTATCCGG.................................................................................................................................................................................. 25 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................AGGTCTTAGAACCTGTTAGGCGAAGT........................................................................................................................................................................................ 26 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................GGTCTTAGAACCTGTTAGGCGAATT........................................................................................................................................................................................ 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................AAAAAGGTCTTAGAACCTGTTAG............................................................................................................................................................................................... 23 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................TTAAAAAGGTCTTAGAA....................................................................................................................................................................................................... 17 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................AGTACCTGTTAGGCGAATTATCCGAAT................................................................................................................................................................................ 27 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................AGGTCTTAGAACCTGTTTGGCGAAG......................................................................................................................................................................................... 25 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................AAGAACCTGTTAGGCGAATTATCCGA.................................................................................................................................................................................. 26 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................TGGCGAATTATCCGAATAACCAGCCAT...................................................................................................................................................................... 27 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................TAGAACCTGTTAGGCGAATTATCCGAATAA.............................................................................................................................................................................. 30 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................TAGAACCTGTTAGGCGAA.......................................................................................................................................................................................... 18 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................ACCTGTTAGGCGAATTATCCGAATA............................................................................................................................................................................... 25 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................TGTTAGGCGAATTATCCGAAT................................................................................................................................................................................ 21 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................................AAGAACCTGTTAGGCGAATTATCCGAAT................................................................................................................................................................................ 28 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................ACCTGTTAGGCGAAATATCCGAATAA.............................................................................................................................................................................. 26 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................TGGCGAATTATCCGAATAACCAGCCATA..................................................................................................................................................................... 28 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................CCGAATAACCAGCCATCGAAAGTC.............................................................................................................................................................. 24 0 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................TAACCAGCCATCGAAAGTCCCAA.......................................................................................................................................................... 23 0 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................AACCAGCCATCGAAAGTCCCA........................................................................................................................................................... 21 0 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................CCAGCCATCGAAAGTC.............................................................................................................................................................. 16 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................CAGCCATCGAAAGTCC............................................................................................................................................................. 16 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................CCGAATAACCAGCCATCGAAAGTCCCAA.......................................................................................................................................................... 28 0 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................TAACCAGCCATCGAAAGT............................................................................................................................................................... 18 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................CGAATAACCAGCCATCGAAAGTCCCAA.......................................................................................................................................................... 27 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................AAAGGTCTTAGAACCT.................................................................................................................................................................................................... 16 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................TAATTAAAAAGGTCCTA.......................................................................................................................................................................................................... 17 1 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................ACGACGGTTCCTATGAC... 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:13537780-13538029 + dsi_15302 CATTTCATTAAAGCTAATGGTAGNNNNNNNNA-----------------TTAATTTTTCCAGAATCTTGGACAATCCGCTTAATAGGCTTATTGGTCGGTAGCTTTCAGGGTTTATGATCACTTTAAAGCTAATTGTTATGACATTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAAACATTTTTTATA-A------C---------------------TTTTG---G-----TAGCTCAT---ATTACTAATGGGACATTGTATCCAA-AATTCTTTAAGAAATTGAACAAAACTCGAACAGTTCGCTTCTGCTGCCAAGGATACGAGGG
droSec2 scaffold_3:217757-217915 + TTA----------------------------------------------------------------------------------------------------------------TGATCACTTCAAAGCTAATTGCTATGACATTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAACAATTTTTTATA-A------T---------------------TTTTGGTGG-----TAGCTCAT---ATTACTAATGGGACATTGTATCCAAAAATTATTTAAGAAATTGAACAAAACGCGAACAGTTCGCTTCTGCTGCCAAGGATACGAGGG
dm3 chr2L:13960678-13960880 + TATTTAATGGAATTTAG-------GCCCAGAATATTCTAATATTTTCTGCAATTTTATAGATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATAGATTTATATTGGAACGA--------------------TTT---GAATAAATAAAAATATTC-----------CAAA---------TCGAAGGTACAAATATAATTTTTG---G-----TAGCTTAT---ATATC-------------------T-AATGCTTTCAGAAATTGAACAAAACGCGAACAGTTCGCTTCTGCTGTCAAGGATACGAGGG
droEre2 scaffold_4929:11511120-11511315 - TTAT-------------------------------------------------------------------------------GAGGCATACTTTTCGGCT--TTGCGTTGCTTATGATCACTTTAAAGCTAATTGTTATGACATTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTG-AATTCCTTAGA-AATGCTTT---------------------TTTTG---GATATTCAGCTCAT---ATTACTTATACGAATTCGTATGCAA-AACCCTTTCAGAAATTGAACAAGACGCGCACAGTTCGCTTTTGCTGCCAAGGCTACGAGGG
droYak3 2L:14044731-14044928 + TTC--------------------------------------------AGTAAATTTATCAATTATA-------------------------------------------------------------------TTGGGACAAAACGAT------------------------------------------------------------------------------------------------------GTATCTTTTAAAATATATCT------------------TTGT--------------------ATTCCTC---GTATTTATAAATTTATTC-----------CAAA------TTTTCGATGGTATAATTA----------------------TCAT---ATTACCAATGAGTGTTCGTATGCAA-AATGCTTTTAGAAGTTGAACAAGACGCGCACAGTTCGCTTTTGCTGCCAAGGGTACGAGGG
droEug1 scf7180000409452:523683-523814 + GATT-------------------------------------------------------------------------------------------------------------TGTGATCATTAAAAAGCTCATTGTTACAGCACTCTTTAGC-----------------------------TTGAAAAT--------------------------------------------------------------------------A----------------------------------------------------------AATTTG------TTTTTA--------------------------------------------------------------------------------------ACTGAA-TTTTCTTTCAGAAATTAAACAAGACACGAACAGTTCGCTTTTGTTGCCAAGGCTACGAAGG
droBia1 scf7180000302422:7955674-7955867 + TC---------------------------------------------------------------------------------------------------------------------------AAAGCTCGTTGTTATTAAACTATTTGGA-----------------------------TTAGACACA------------------------------------TCTTGGGCGAT------------CTGT--TTTGCAATATATCATGTCATTTTGGTTTATTT------GATTTGGGTTAAATACTTTTACACTTAAAGGTTTC------TATTTA--------------------------------------------------------------------------------------AACTCA-AACTCTTACAGAAACTGAACAAGACGCGAACAGTGCGCTTTTGCTGCCAGGGCTACGAGGG
droTak1 scf7180000415399:1359466-1359532 - ACC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA-ACTACTTACAGAAATTGAACAAGACCCGAACAGTTCGCTTTTGCTGCCAGGGCTACGAGGG
droEle1 scf7180000491338:1578410-1578477 + TGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTA-AACCGTTACAGAAATTGAACAAGACGCGAAAAGTTCGCTTTTGCTGCCAAGGCTACGAGGG
droRho1 scf7180000780107:107754-107814 - AA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTTCAGAAATTAAACAAGACGCGAAAAGTTCGCTTTTGTTGTCAAGGCTACGAGGG
droFic1 scf7180000454082:97567-97800 - TTTTTAACAAAATTGAG---------------------------------------------------------------------------------------------------------------------TATTTTTCACCTACTTAAAAAACATAAAACAAATGTAAAAAAACAATTATAGACACAAAATGTAATTGTCATGTTGTAATAAAAAAAGTTTAATTTTGAGCAAATAATAAT-----------TTTGTAAAAT----------------------------------------------------AAAATTCTTTAAAGTGGTTTTCACAATT--------------------------------------------------------------------------------TGTTAAA-TATTTTTTCAGAAATTAAACAAAACGCGAACTGTTCGCTTTTGCTGCCAAGGCTACGAGGG
droKik1 scf7180000301334:160243-160467 - AACTCTTTAAAAAGGAG-------------------------------------------------------------------------------------------------------------------ATATTCCCAGGAA------------------------------------------------------ATCTCAGGTTGGT---------------TATTGATGTATTACGAATATGGTATAAGTTTTTAAACTTACCT------------------TACT--------------------TGACACCAAGGGGTTTATAGAGCTTTTC-----------AAGA------TTCAGGCACCTTTAATTT----------------------ATATTTAAATAACAATG--------GAATAAC-GCTGTTTGCAGAAATTAAACAAGACGCGAACAGTTCGCTTCTGCTGCCAAGGATACGAGGG
droAna3 scaffold_12916:11819744-11819802 - TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTAGAAACTAAACAAAACGCGAACTGTTCGTTTTTGCTGTCAAGGCTATGAGGG
droBip1 scf7180000396769:172550-172616 - ATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAC-ATTTTTTGTAGAAACTAAACAAAACTCGGACTGTTCGTTTCTGCTGCCAAGGCTACGAGGG
dp5 4_group4:5730769-5730825 - C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCAGAAATTGAACAAGACGCGAACGGTACGATTCTGCTGCCAGGGCTACGAGGG
droPer2 scaffold_16:1209466-1209522 + C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCAGAAATTGAACAAGACGCGAACGGTACGATTCTGCTGCCAGGGCTACGAGGG
droWil2 scf2_1100000004521:1601660-1601711 - -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAGTTTGAATAAAACTCGCACAGTGCGATTTTGCTGCCAAGGCTATGAGGG
droVir3 scaffold_12723:954699-954758 + A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTTTAGAGAGTCAACAAAACGCGCACAGTACGCTTTTGCTGTCAAGGCTATGAGGG
droMoj3 scaffold_6500:10383164-10383221 - T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTCAGAGATTAAATAAAACGCGCACAGTTCGCTTTTGCTGCCAAGGCTATGAGGG
droGri2 scaffold_15252:4451201-4451256 + T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAGCGACTGAATAAAACGCGCACAGTTCGCTTTTGCTGTCAAGGCTATGAGGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CATTTCATTAAAGCTAATGGTAGNNNNNNNNA-----------------TTAATTTTTCCAGAATCTTGGACAATCCGCTTAATAGGCTTATTGGTCGGTAGCTTTCAGGGTTTATGATCACTTTAAAGCTAATTGTTATGACATTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAAACATTTTTTATA-A------C---------------------TTTTG---G-----TAGCTCAT---ATTACTAATGGGACATTGTATCCAA-AATTCTTTAAGAAATTGAACAAAACTCGAACAGTTCGCTTCTGCTGCCAAGGATACGAGGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................TAGGCTTATTGGTCGGTAGCTTTCAGGG................................................................................................................................................................................................................................................................................................................................................................................................282159.003180000001718156100000000
................................................................TCTTGGACAATCCGCTTAATAGGCT......................................................................................................................................................................................................................................................................................................................................................................................................................252103.00206005000425437660020000
.........................................................................................TATTGGTCGGTAGCTTTCAGGGT...............................................................................................................................................................................................................................................................................................................................................................................................23368.6720600000074253136210181000
...................................................................................TAGGCTTATTGGTCGGTAGCTTTCAGG.................................................................................................................................................................................................................................................................................................................................................................................................27268.50137000000613426140020000
...........................................................CAGAATCTTGGACAATCCGCTTAATA..........................................................................................................................................................................................................................................................................................................................................................................................................................26266.00132000000253236362010000
...................................................................................TAGGCTTATTGGTCGGTAGCTTTCAGGGT...............................................................................................................................................................................................................................................................................................................................................................................................29251.0010200000056212320000000
...........................................................CAGAATCTTGGACAATCCGCTTAATAGGCT......................................................................................................................................................................................................................................................................................................................................................................................................................30249.00980000003552920000000
..................................................................TTGGACAATCCGCTTAATAGGCTTA....................................................................................................................................................................................................................................................................................................................................................................................................................25234.506900000081115284030000
.........................................................................................TATTGGTCGGTAGCTTTCAGGGTT..............................................................................................................................................................................................................................................................................................................................................................................................24331.339400500021873170321000
...................................................................................TAGGCTTATTGGTCGGTAGCTTT.....................................................................................................................................................................................................................................................................................................................................................................................................23231.0062000000731220461000
................................................................TCTTGGACAATCCGCTTAATAGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................24230.506100200091315191011000
........................................................................................TTATTGGTCGGTAGCTTTCAGGGT...............................................................................................................................................................................................................................................................................................................................................................................................24327.33820000001420161350140000
..................................................................TTGGACAATCCGCTTAATAGGCTTAT...................................................................................................................................................................................................................................................................................................................................................................................................................26227.00540051002712232020000
...............................................................ATCTTGGACAATCCGCTTAATAGGCT......................................................................................................................................................................................................................................................................................................................................................................................................................26226.5053000200101411150010000
.......................................................TTTCCAGAATCTTGGACAATCCGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................25224.004800100010711181000000
..................................................................TTGGACAATCCGCTTAATAGGCT......................................................................................................................................................................................................................................................................................................................................................................................................................23217.00340000001311163000000
...........................................................CAGAATCTTGGACAATCCGCTTAATAGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................29215.50310000006111120010000
...................................................................................TAGGCTTATTGGTCGGTAGCTTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................26214.5029000000134381000000
.........................................................TCCAGAATCTTGGACAATCCGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................23214.50290000001101170000000
...................................................................................TAGGCTTATTGGTCGGTAGCTTTC....................................................................................................................................................................................................................................................................................................................................................................................................24213.0026000000522000170000
................................................................TCTTGGACAATCCGCTTAATAGGCTTA....................................................................................................................................................................................................................................................................................................................................................................................................................27213.0026000000244121030000
........................................................................................TTATTGGTCGGTAGCTTTCAGGGTT..............................................................................................................................................................................................................................................................................................................................................................................................25312.0036002000645120151000
...............................................................ATCTTGGACAATCCGCTTAATAGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................25212.002400000036471030000
...........................................................CAGAATCTTGGACAATCCGCTTAATAGG........................................................................................................................................................................................................................................................................................................................................................................................................................28211.002200000079150000000
........................................................TTCCAGAATCTTGGACAATCCGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................2429.0018000000143100000000
...................................................................................TAGGCTTATTGGTCGGTAGCTT......................................................................................................................................................................................................................................................................................................................................................................................................2228.501700000020730050000
...........................................................CAGAATCTTGGACAATCCGCTTAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................2527.501500010016130030000
...................................................................................TAGGCTTATTGGTCGGTAGCTTTCA...................................................................................................................................................................................................................................................................................................................................................................................................2527.501500000041020062000
................................................................................TAATAGGCTTATTGGTCGGTAGCT.......................................................................................................................................................................................................................................................................................................................................................................................................2427.501500920010210000000
.........................................................................................TATTGGTCGGTAGCTTTCAGGG................................................................................................................................................................................................................................................................................................................................................................................................2237.332200000083314120000
................................................................................TAATAGGCTTATTGGTCGGTAGC........................................................................................................................................................................................................................................................................................................................................................................................................2327.001400110022530000000
.......................................................TTTCCAGAATCTTGGACAATCCGC................................................................................................................................................................................................................................................................................................................................................................................................................................2427.001400008020130000000
............................................................AGAATCTTGGACAATCCGCTTAATAGGCT......................................................................................................................................................................................................................................................................................................................................................................................................................2926.501300010016140000000
................................................................................TAATAGGCTTATTGGTCGGTAGCTT......................................................................................................................................................................................................................................................................................................................................................................................................2526.001200800001030000000
..........................................................................TCCGCTTAATAGGCTTATTGGTCGGT...........................................................................................................................................................................................................................................................................................................................................................................................................2626.001200000001013061000
.....................................................................................GGCTTATTGGTCGGTAGCTTTCAGGGT...............................................................................................................................................................................................................................................................................................................................................................................................2735.6717000000110000132000
................................................................................TAATAGGCTTATTGGTCGGTAGCTTT.....................................................................................................................................................................................................................................................................................................................................................................................................2625.501100310001000060000
................................................................TCTTGGACAATCCGCTTAATAGG........................................................................................................................................................................................................................................................................................................................................................................................................................2325.001000000023500000000
........................................................................................TTATTGGTCGGTAGCTTTCAGGG................................................................................................................................................................................................................................................................................................................................................................................................2335.001500000022231041000
..................................................................TTGGACAATCCGCTTAATAGGCTTATT..................................................................................................................................................................................................................................................................................................................................................................................................................2725.001000000012340000000
...........................................................CAGAATCTTGGACAATCCGCTTAATAG.........................................................................................................................................................................................................................................................................................................................................................................................................................2724.00800100022120000000
............................................................................CGCTTAATAGGCTTATTGGTCGGTAGC........................................................................................................................................................................................................................................................................................................................................................................................................2724.00800000014000030000
...........................................................CAGAATCTTGGACAATCCGCTTAA............................................................................................................................................................................................................................................................................................................................................................................................................................2424.00800000020140010000
................................................................TCTTGGACAATCCGCTTAATAGGCTTAT...................................................................................................................................................................................................................................................................................................................................................................................................................2823.50700300020200000000
......................................................TTTTCCAGAATCTTGGACAATCCGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................2623.50700000002230000000
.......................................................TTTCCAGAATCTTGGACAATCCGCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................2623.50700000030040000000
........................................................................................TTATTGGTCGGTAGCTTTCAGGGTA..............................................................................................................................................................................................................................................................................................................................................................................................2533.331000000010000090000
...........................................................................................TTGGTCGGTAGCTTTCAGGGT...............................................................................................................................................................................................................................................................................................................................................................................................2133.00900000012230010000
........................................................................................TTATTGGTCGGTAGCTTTCA...................................................................................................................................................................................................................................................................................................................................................................................................2033.00900008000010000000
...................................................................................TAGGCTTATTGGTCGGTAGCTTTA....................................................................................................................................................................................................................................................................................................................................................................................................2423.00600000000000060000
.....................................................................................GGCTTATTGGTCGGTAGCTTTCAGGG................................................................................................................................................................................................................................................................................................................................................................................................2632.67800000000020060000
.........................................................................................TATTGGTCGGTAGCTTTCAGG.................................................................................................................................................................................................................................................................................................................................................................................................2132.67800000010005011000
...................................................................................TAGGCTTATTGGTCGGTAGCT.......................................................................................................................................................................................................................................................................................................................................................................................................2122.50500000020200010000
..................................................................TTGGACAATCCGCTTAATAGGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................2422.50500000010100030000
.........................................................TCCAGAATCTTGGACAATCCGCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................2422.50500000001031000000
...............................................................ATCTTGGACAATCCGCTTAATAGGCTA.....................................................................................................................................................................................................................................................................................................................................................................................................................2722.50500000000000050000
...................................................................TGGACAATCCGCTTAATAGGCTTATTGGT...............................................................................................................................................................................................................................................................................................................................................................................................................2922.50500000010220000000
...........................................................CAGAATCTTGGACAATCCGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................2122.50500000031001000000
.....................................................................................GGCTTATTGGTCGGTAGCTTTCAGG.................................................................................................................................................................................................................................................................................................................................................................................................2532.33700000000020050000
.........................................................................................TATTGGTCGGTAGCTTTCAGGGTA..............................................................................................................................................................................................................................................................................................................................................................................................2432.33700000000001060000
...................................................................................TAGGCTTATTGGTCGGTAGC........................................................................................................................................................................................................................................................................................................................................................................................................2022.00400000000004000000
............................................................................CGCTTAATAGGCTTATTGGTCGG............................................................................................................................................................................................................................................................................................................................................................................................................2322.00400000003010000000
...................................................................TGGACAATCCGCTTAATAGGCTTA....................................................................................................................................................................................................................................................................................................................................................................................................................2422.00400010000030000000
.............................................................GAATCTTGGACAATCCGCTTAATAGGCT......................................................................................................................................................................................................................................................................................................................................................................................................................2822.00400000000120010000
...........................................................................................TTGGTCGGTAGCTTTCAGGGTT..............................................................................................................................................................................................................................................................................................................................................................................................2232.00600000003010002000
................................................................TCTTGGACAATCCGCTTAATAGGCTA.....................................................................................................................................................................................................................................................................................................................................................................................................................2622.00400000000000040000
..................................................................TTGGACAATCCGCTTAATAGG........................................................................................................................................................................................................................................................................................................................................................................................................................2122.00400000030000010000
.........................................................................................TATTGGTCGGTAGCTTTCAGGGTTTAA...........................................................................................................................................................................................................................................................................................................................................................................................2712.00200000000000002000
..................................................................TTGGACAATCCGCTTAATAGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................2222.00400000011200000000
............................................................................................TGGTCGGTAGCTTTCAGGGT...............................................................................................................................................................................................................................................................................................................................................................................................2032.00600000001010040000
.........................................................TCCAGAATCTTGGACAATCCGCTTA.............................................................................................................................................................................................................................................................................................................................................................................................................................2522.00400000011110000000
.....................................................TTTTTCCAGAATCTTGGACAATCCGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................2722.00400000002011000000
........................................................TTCCAGAATCTTGGACAATCCGCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................2522.00400000020110000000
CATTTCATTAAAGCTAATGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20131.6922000002200000000000
..........................................................CCAGAATCTTGGACAATCCGCTTAA............................................................................................................................................................................................................................................................................................................................................................................................................................2521.50300000000011010000
..................................................................................ATAGGCTTATTGGTCGGTAGC........................................................................................................................................................................................................................................................................................................................................................................................................2121.50300000000002001000
.................................................................CTTGGACAATCCGCTTAATAGGCTTA....................................................................................................................................................................................................................................................................................................................................................................................................................2621.50300000002010000000
............................................................................CGCTTAATAGGCTTATTGGTCGGTA..........................................................................................................................................................................................................................................................................................................................................................................................................2521.50300000000000030000
................................................................................TAATAGGCTTATTGGTCGGTAGCTTTC....................................................................................................................................................................................................................................................................................................................................................................................................2721.50300000000000012000
............................................................................CGCTTAATAGGCTTATTGGTCGGTAG.........................................................................................................................................................................................................................................................................................................................................................................................................2621.50300000000100011000
..........................................................CCAGAATCTTGGACAATCCGCTTAATA..........................................................................................................................................................................................................................................................................................................................................................................................................................2721.50300000002000010000
...................................................................................TAGGCTTATTGGTCGGTAGCTTTCAGGGTT..............................................................................................................................................................................................................................................................................................................................................................................................3021.50300000021000000000
................................................................................TAATAGGCTTATTGGTCGGT...........................................................................................................................................................................................................................................................................................................................................................................................................2021.50300000000012000000
..................................................................TTGGACAATCCGCTTAATAGGCTTATTGGT...............................................................................................................................................................................................................................................................................................................................................................................................................3021.50300000021000000000
...............................................................................TTAATAGGCTTATTGGTCGGTAGC........................................................................................................................................................................................................................................................................................................................................................................................................2421.50300000001011000000
.....................................................................................GGCTTATTGGTCGGTAGCTTT.....................................................................................................................................................................................................................................................................................................................................................................................................2131.33400000000000013000
....................................................................................AGGCTTATTGGTCGGTAGCTTTCAGG.................................................................................................................................................................................................................................................................................................................................................................................................2631.33400000002110000000
............................................................AGAATCTTGGACAATCCGCTTAATAGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................2821.00200000010010000000
.........................................................TCCAGAATCTTGGACAATCCGCTTAA............................................................................................................................................................................................................................................................................................................................................................................................................................2621.00200000010000010000
.........................................................................ATCCGCTTAATAGGCTTATTGGTCGGT...........................................................................................................................................................................................................................................................................................................................................................................................................2721.00200000000000011000
............................................................................................TGGTCGGTAGCTTTCAGGGTT..............................................................................................................................................................................................................................................................................................................................................................................................2131.00300000000101010000
...............................................................ATCTTGGACAATCCGCTTAATAGGCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................2721.00200000000010010000
..........................................................CCAGAATCTTGGACAATCCGCTTAATAG.........................................................................................................................................................................................................................................................................................................................................................................................................................2821.00200000001000010000
...........................................................CAGAATCTTGGACAATCCGCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................2221.00200000001100000000
..........................................................................TCCGCTTAATAGGCTTATTGGTCGGTA..........................................................................................................................................................................................................................................................................................................................................................................................................2721.00200000001000010000
...................................................................TGGACAATCCGCTTAATAGGCT......................................................................................................................................................................................................................................................................................................................................................................................................................2221.00200000000011000000
...................................................................TGGACAATCCGCTTAATAGGCTTAT...................................................................................................................................................................................................................................................................................................................................................................................................................2521.00200000011000000000
..........................................................CCAGAATCTTGGACAATCCGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................2221.00200000000020000000
................................................................................TAATAGGCTTATTGGTCGGTAGCG.......................................................................................................................................................................................................................................................................................................................................................................................................2421.00200200000000000000
............................................................................CGCTTAATAGGCTTATTGGTCGGTAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................2821.00200000000000020000
...........................................................CAGAATCTTGGACAATCCGCTTAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................2521.00200000010100000000
........................................................................................TTATTGGTCGGTAGCTTTCAGGGA...............................................................................................................................................................................................................................................................................................................................................................................................2431.00300000000000030000
...................................................................................TAGGCTTATTGGTCGGT...........................................................................................................................................................................................................................................................................................................................................................................................................1721.00200000000002000000
...............................................................ATCTTGGACAATCCGCTTAATAGGCA......................................................................................................................................................................................................................................................................................................................................................................................................................2621.00200000001000010000
...............................................................................TTAATAGGCTTATTGGTCGGTAGCT.......................................................................................................................................................................................................................................................................................................................................................................................................2521.00200000001010000000
...................................................................................TAGGCTTATTGGTCGGTAGCTTTT....................................................................................................................................................................................................................................................................................................................................................................................................2421.00200000000000020000
................................................................TCTTGGACAATCCGCTTAATAG.........................................................................................................................................................................................................................................................................................................................................................................................................................2221.00200000010010000000
.........................................................................................TATTGGTCGGTAGCT.......................................................................................................................................................................................................................................................................................................................................................................................................1531.00300000000003000000
.........................................................................................TATTGGTCGGTAGCTTTCAGGGTTT.............................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000010000
...................................................................TGGACAATCCGCTTAATAGGCTTATTG.................................................................................................................................................................................................................................................................................................................................................................................................................2721.00200000000020000000
........................................................................................TTATTGGTCGGTAGCTTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................2131.00300000000000021000
...............................................................ATCTTGGACAATCCGCTTAATAGGCTTAT...................................................................................................................................................................................................................................................................................................................................................................................................................2921.00200000020000000000
.................................................................CTTGGACAATCCGCTTAATAGGCT......................................................................................................................................................................................................................................................................................................................................................................................................................2421.00200100001000000000
...................................................................TGGACAATCCGCTTAATAGGCTTATTGGA...............................................................................................................................................................................................................................................................................................................................................................................................................2921.00200000000200000000
....................................................................................AGGCTTATTGGTCGGTAGCTT......................................................................................................................................................................................................................................................................................................................................................................................................2130.67200000000000011000
....................................................................................AGGCTTATTGGTCGGTAGCTTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................2530.67200000000100010000
............................................................................................TGGTCGGTAGCTTTCAGGGTA..............................................................................................................................................................................................................................................................................................................................................................................................2130.67200000000000020000
......................................................................................GCTTATTGGTCGGTAGCTTTCAGGG................................................................................................................................................................................................................................................................................................................................................................................................2530.67200000010100000000
........................................................................................TTATTGGTCGGTAGCTTTCAGG.................................................................................................................................................................................................................................................................................................................................................................................................2230.67200000000000020000
.........................................................................................TATTGGTCGGTAGCTTTCAGGGC...............................................................................................................................................................................................................................................................................................................................................................................................2330.67200000020000000000
.....................................................................................GGCTTATTGGTCGGTAGCTTTCAG..................................................................................................................................................................................................................................................................................................................................................................................................2430.67200000000000020000
....................................................................................AGGCTTATTGGTCGGTAGCTTT.....................................................................................................................................................................................................................................................................................................................................................................................................2230.67200000000000002000
................................................................................TAATAGGCTTATTGGTCGGTAGG........................................................................................................................................................................................................................................................................................................................................................................................................2320.50100010000000000000
...........................................................CAGAATCTTGGACAATCCGCTTAT............................................................................................................................................................................................................................................................................................................................................................................................................................2420.50100000010000000000
.................................................................................AATAGGCTTATTGGTCGGTAG.........................................................................................................................................................................................................................................................................................................................................................................................................2120.50100000000001000000
..................................................................TTGGACAATCCGCTTAATAGGCTTAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................2820.50100000000010000000
...................................................................................TAGGCTTATTGGTCGGTAGCTTTCAGT.................................................................................................................................................................................................................................................................................................................................................................................................2720.50100000010000000000
........................................................TTCCAGAATCTTGGACAATCCGCTTAA............................................................................................................................................................................................................................................................................................................................................................................................................................2720.50100000000100000000
...................................................................................TAGGCTTATTGGTCGGTAGCTTTCAGGT................................................................................................................................................................................................................................................................................................................................................................................................2820.50100000000010000000
............................................................AGAATCTTGGACAATCCGCTTAATA..........................................................................................................................................................................................................................................................................................................................................................................................................................2520.50100000000001000000
....................................................................GGACAATCCGCTTAATAGG........................................................................................................................................................................................................................................................................................................................................................................................................................1920.50100000000010000000
.........................................................TCCAGAATCTTGGACAATCCGCTTAATT..........................................................................................................................................................................................................................................................................................................................................................................................................................2820.50100000000100000000
.......................................................TTTCCAGAATCTTGGACAATCCCAC...............................................................................................................................................................................................................................................................................................................................................................................................................................2520.50100000001000000000
................................................................................TAATAGGCTTATTGGTCG.............................................................................................................................................................................................................................................................................................................................................................................................................1820.50100000000001000000
................................................................TCTTGGACAATCCGCTTAATAGGCC......................................................................................................................................................................................................................................................................................................................................................................................................................2520.50100100000000000000
.......................................................TTTCCAGAATCTTGGACAATC...................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50100000000010000000
..........................................................CCAGAATCTTGGACAATCCGCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................2320.50100000010000000000
................................................................TCTTGGACAATCCGCTTAATAGGCG......................................................................................................................................................................................................................................................................................................................................................................................................................2520.50100100000000000000
............................................................AGAATCTTGGACAATCCG.................................................................................................................................................................................................................................................................................................................................................................................................................................1820.50100000000001000000
...............................................................................TTAATAGGCTTATTGGTCGGTAGCTT......................................................................................................................................................................................................................................................................................................................................................................................................2620.50100000000010000000
...........................................................CAGAATCTTGGACAATCCGCTTAATTCT........................................................................................................................................................................................................................................................................................................................................................................................................................2820.50100000000100000000
................................................................TCTTGGACAATCCGCTTAATAGGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................2620.50100000010000000000
...................................................................................TAGGCTTATTGGTCGGTAG.........................................................................................................................................................................................................................................................................................................................................................................................................1920.50100000000001000000
...............................................................ATCTTGGACAATCCGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................1720.50100000000001000000
..........................................................CCAGAATCTTGGACAATCCGCTTAATAGG........................................................................................................................................................................................................................................................................................................................................................................................................................2920.50100000000100000000
................................................................................TAATAGGCTTATTGGTCGGTAGCTTTCAGGG................................................................................................................................................................................................................................................................................................................................................................................................3120.50100000000010000000
.......................................................TTTCCAGAATCTTGGACAATCCGCTTA.............................................................................................................................................................................................................................................................................................................................................................................................................................2720.50100000000010000000
.........................................................TCCAGAATCTTGGACAATCCGCTA..............................................................................................................................................................................................................................................................................................................................................................................................................................2420.50100010000000000000
...................................................................TGGACAATCCGCTTAATAGGCTTATTGG................................................................................................................................................................................................................................................................................................................................................................................................................2820.50100000000010000000
...................................................................................TAGGCTTATTGGTCGGTAGCTTA.....................................................................................................................................................................................................................................................................................................................................................................................................2320.50100000000000010000
........................................................TTCCAGAATCTTGGACAATCCGCTTAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................2820.50100000000010000000
..................................................................................ATAGGCTTATTGGTCGGTA..........................................................................................................................................................................................................................................................................................................................................................................................................1920.50100000000001000000
............................................................................CGCTTAATAGGCTTATTGGTCGGT...........................................................................................................................................................................................................................................................................................................................................................................................................2420.50100000001000000000
............................................................AGAATCTTGGACAATCCGCTTAATAGGCA......................................................................................................................................................................................................................................................................................................................................................................................................................2920.50100000000000010000
..........................................................................TCCGCTTAATAGGCTTATT..................................................................................................................................................................................................................................................................................................................................................................................................................1920.50100000000001000000
........................................................................AATCCGCTTAATAGGCTTA....................................................................................................................................................................................................................................................................................................................................................................................................................1920.50100000000001000000
...........................................................CAGAATCTTGGACAATCCGCTTA.............................................................................................................................................................................................................................................................................................................................................................................................................................2320.50100000010000000000
..............................................................AATCTTGGACAATCCGCTTAATAGGCT......................................................................................................................................................................................................................................................................................................................................................................................................................2720.50100000000010000000
.......................................................TTTCCAGAATCTTGGACAATCCGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................2520.50100000001000000000
............................................................AGAATCTTGGACAATCCGCTTAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................2420.50100000000001000000
..........................................................................TCCGCTTAATAGGCTTATTGGTCGGTAGC........................................................................................................................................................................................................................................................................................................................................................................................................2920.50100000000000001000
................................................................................TAATAGGCTTATTGGTCGGTAGCC.......................................................................................................................................................................................................................................................................................................................................................................................................2420.50100100000000000000
..................................................................TTGGACAATCCGCTTAATAGGCTTATA..................................................................................................................................................................................................................................................................................................................................................................................................................2720.50100000000000010000
...........................................................CAGAATCTTGGACAATCCGCTTAATAGGCA......................................................................................................................................................................................................................................................................................................................................................................................................................3020.50100000000100000000
.................................................................CTTGGACAATCCGCTTAATAGGCC......................................................................................................................................................................................................................................................................................................................................................................................................................2420.50100100000000000000
...........................................................CAGAATCTTGGACAATCCGCTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................2420.50100000000100000000
............................................................AGAATCTTGGACAATCCGCTTAATAGG........................................................................................................................................................................................................................................................................................................................................................................................................................2720.50100000001000000000
...............................................................................TTAATAGGCTTATTGGTCGGT...........................................................................................................................................................................................................................................................................................................................................................................................................2120.50100000000000001000
droSec2
TTA----------------------------------------------------------------------------------------------------------------TGATCACTTCAAAGCTAATTGCTATGACATTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAACAATTTTTTATA-A------T---------------------TTTTGGTGG-----TAGCTCAT---ATTACTAATGGGACATTGTATCCAAAAATTATTTAAGAAATTGAACAAAACGCGAACAGTTCGCTTCTGCTGCCAAGGATACGAGGGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
TATTTAATGGAATTTAG-------GCCCAGAATATTCTAATATTTTCTGCAATTTTATAGATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATAGATTTATATTGGAACGA--------------------TTT---GAATAAATAAAAATATTC-----------CAAA---------TCGAAGGTACAAATATAATTTTTG---G-----TAGCTTAT---ATATC-------------------T-AATGCTTTCAGAAATTGAACAAAACGCGAACAGTTCGCTTCTGCTGTCAAGGATACGAGGGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTCAAGGATACGAGG.1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
......................................AATATTTTCTGCAATTTTAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TTAT-------------------------------------------------------------------------------GAGGCATACTTTTCGGCT--TTGCGTTGCTTATGATCACTTTAAAGCTAATTGTTATGACATTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTG-AATTCCTTAGA-AATGCTTT---------------------TTTTG---GATATTCAGCTCAT---ATTACTTATACGAATTCGTATGCAA-AACCCTTTCAGAAATTGAACAAGACGCGCACAGTTCGCTTTTGCTGCCAAGGCTACGAGGGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
TTC--------------------------------------------AGTAAATTTATCAATTATA-------------------------------------------------------------------TTGGGACAAAACGAT------------------------------------------------------------------------------------------------------GTATCTTTTAAAATATATCT------------------TTGT--------------------ATTCCTC---GTATTTATAAATTTATTC-----------CAAA------TTTTCGATGGTATAATTA----------------------TCAT---ATTACCAATGAGTGTTCGTATGCAA-AATGCTTTTAGAAGTTGAACAAGACGCGCACAGTTCGCTTTTGCTGCCAAGGGTACGAGGGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
GATT-------------------------------------------------------------------------------------------------------------TGTGATCATTAAAAAGCTCATTGTTACAGCACTCTTTAGC-----------------------------TTGAAAAT--------------------------------------------------------------------------A----------------------------------------------------------AATTTG------TTTTTA--------------------------------------------------------------------------------------ACTGAA-TTTTCTTTCAGAAATTAAACAAGACACGAACAGTTCGCTTTTGTTGCCAAGGCTACGAAGGSizeHit CountTotal NormTotal
No Reads
droBia1
TC---------------------------------------------------------------------------------------------------------------------------AAAGCTCGTTGTTATTAAACTATTTGGA-----------------------------TTAGACACA------------------------------------TCTTGGGCGAT------------CTGT--TTTGCAATATATCATGTCATTTTGGTTTATTT------GATTTGGGTTAAATACTTTTACACTTAAAGGTTTC------TATTTA--------------------------------------------------------------------------------------AACTCA-AACTCTTACAGAAACTGAACAAGACGCGAACAGTGCGCTTTTGCTGCCAGGGCTACGAGGGSizeHit CountTotal NormTotal
No Reads
droTak1
ACC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA-ACTACTTACAGAAATTGAACAAGACCCGAACAGTTCGCTTTTGCTGCCAGGGCTACGAGGGSizeHit CountTotal NormTotal
No Reads
droEle1
TGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTA-AACCGTTACAGAAATTGAACAAGACGCGAAAAGTTCGCTTTTGCTGCCAAGGCTACGAGGGSizeHit CountTotal NormTotal
No Reads
droRho1
AA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTTCAGAAATTAAACAAGACGCGAAAAGTTCGCTTTTGTTGTCAAGGCTACGAGGGSizeHit CountTotal NormTotal
No Reads
droFic1
TTTTTAACAAAATTGAG---------------------------------------------------------------------------------------------------------------------TATTTTTCACCTACTTAAAAAACATAAAACAAATGTAAAAAAACAATTATAGACACAAAATGTAATTGTCATGTTGTAATAAAAAAAGTTTAATTTTGAGCAAATAATAAT-----------TTTGTAAAAT----------------------------------------------------AAAATTCTTTAAAGTGGTTTTCACAATT--------------------------------------------------------------------------------TGTTAAA-TATTTTTTCAGAAATTAAACAAAACGCGAACTGTTCGCTTTTGCTGCCAAGGCTACGAGGGSizeHit CountTotal NormTotal
No Reads
droKik1
AACTCTTTAAAAAGGAG-------------------------------------------------------------------------------------------------------------------ATATTCCCAGGAA------------------------------------------------------ATCTCAGGTTGGT---------------TATTGATGTATTACGAATATGGTATAAGTTTTTAAACTTACCT------------------TACT--------------------TGACACCAAGGGGTTTATAGAGCTTTTC-----------AAGA------TTCAGGCACCTTTAATTT----------------------ATATTTAAATAACAATG--------GAATAAC-GCTGTTTGCAGAAATTAAACAAGACGCGAACAGTTCGCTTCTGCTGCCAAGGATACGAGGGSizeHit CountTotal NormTotal
No Reads
droAna3
TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTAGAAACTAAACAAAACGCGAACTGTTCGTTTTTGCTGTCAAGGCTATGAGGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
ATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAC-ATTTTTTGTAGAAACTAAACAAAACTCGGACTGTTCGTTTCTGCTGCCAAGGCTACGAGGGSizeHit CountTotal NormTotal
No Reads
dp5
C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCAGAAATTGAACAAGACGCGAACGGTACGATTCTGCTGCCAGGGCTACGAGGGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAAATTGAACAAGACGC..................................1911.0010000000001
droPer2
C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCAGAAATTGAACAAGACGCGAACGGTACGATTCTGCTGCCAGGGCTACGAGGGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGAAATTGAACAAGACGCGAACG.............................2611.001010000
droWil2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAGTTTGAATAAAACTCGCACAGTGCGATTTTGCTGCCAAGGCTATGAGGGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTTTAGAGAGTCAACAAAACGCGCACAGTACGCTTTTGCTGTCAAGGCTATGAGGGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTCAGAGATTAAATAAAACGCGCACAGTTCGCTTTTGCTGCCAAGGCTATGAGGGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGATTAAATAAAACGCGC................................2111.001000010
droGri2
T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAGCGACTGAATAAAACGCGCACAGTTCGCTTTTGCTGTCAAGGCTATGAGGGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 12:44 PM