ID:

dsi_15293

 Coordinate:

2l:16057396-16057545 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [2l_16057256_16057395_+]; exon [2l_16056874_16057395_+]; intron [2l_16057396_16070538_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CCGGCCATCGATGTCAAAGCAGAGCAAATTGTGCCCAAGGACGCGGCAACGTAAGTAAAAATAAAAACGACAAAAATCTCCACAGTCGCTTTAAAACCAGATATAACAGCCTGTCTGTGAATGTGATTCCAAGTTACTTAAAAACTGTAGCTATGTTTATGCACAGTATTGTGTACATTTAGATAAGGCGGAAAAATCTGGCATAATTATTTATGTTGCTAAATAGTAATCAATTTATTCAACTTTAATG
**********************************************************************************...((((((((....((((((........)))))))))).))))**************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 M023
head
..........................................................................................................CAGCCTGTCTGTGAATGTGA............................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
............GTCAAAGCAGAGCAAATTGT.......................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................ATTGTGCCCAAGGACGCGGC........................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TTAGATAAGGCGGAAAAATCTGGCA............................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.......TCGATGTCAAAGCAGAGCAAATTG........................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................CAGTCGCTTTAAAACCAG...................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................CAAATTGTGCCCAAGGACGC.............................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..GGCCATCGATGTCAAAGCA..................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................GCAGAGCAAATTGTGCCCAAGGACGCG............................................................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......TCGATGTCAAAGCAGAGCAAA.............................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.......................GCAAATTGTGCCCAAGGACGCGGC........................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
........................CAAATTGTGCCCAAGGAC................................................................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GATAAGGCGGAAAAA...................................................... 15 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0
...........................................................................................TAAAACCGGATATAATAGC............................................................................................................................................ 19 2 7 0.29 2 0 0 0 0 2 0 0 0 0 0
..............................................................................................................................TTCCAAGTTAGTTAAAA........................................................................................................... 17 1 4 0.25 1 0 0 0 0 0 0 1 0 0 0
..................................................................................................................CTGTGATTGTGATTCCA....................................................................................................................... 17 1 4 0.25 1 0 0 0 0 0 0 0 1 0 0
..............CAAAGCGGAGCAAATTG........................................................................................................................................................................................................................... 17 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0
................TAGCAGAGCAAATTGTG......................................................................................................................................................................................................................... 17 1 8 0.13 1 0 0 1 0 0 0 0 0 0 0
...........................................CGGCAACGTAAGTGA................................................................................................................................................................................................ 15 1 9 0.11 1 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................AAAATATGGCATAATTA......................................... 17 1 10 0.10 1 0 0 0 0 0 0 0 0 1 0
...........................................................................................TAAAACCGGATATAATAG............................................................................................................................................. 18 2 11 0.09 1 0 0 0 0 1 0 0 0 0 0
.....................CAGTAAATTGTGCCCGAGG.................................................................................................................................................................................................................. 19 3 16 0.06 1 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................TTATTGCACAGTATTGCGTA........................................................................... 20 3 16 0.06 1 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................ACTTAATGACTGTAGCT.................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................TTAAAGACTGTAGGTAT................................................................................................ 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0
.....................................................AGTAAAAAGAAAAAGGAC................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GGCCGGTAGCTACAGTTTCGTCTCGTTTAACACGGGTTCCTGCGCCGTTGCATTCATTTTTATTTTTGCTGTTTTTAGAGGTGTCAGCGAAATTTTGGTCTATATTGTCGGACAGACACTTACACTAAGGTTCAATGAATTTTTGACATCGATACAAATACGTGTCATAACACATGTAAATCTATTCCGCCTTTTTAGACCGTATTAATAAATACAACGATTTATCATTAGTTAAATAAGTTGAAATTAC
****************************************************************************************************************************...((((((((....((((((........)))))))))).))))********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
.................................................................TTGCTGTTTTTAGCGATGTTAG................................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0
.........................................................................................AAATTTTGGCCTATATTAT.............................................................................................................................................. 19 2 3 0.33 1 0 1 0 0
..........................................................................................AATTTTGGTCTATAT................................................................................................................................................. 15 0 4 0.25 1 0 0 1 0
.....................................................................................................................ACTGAGGCTAAGGTTCAATG................................................................................................................. 20 3 7 0.14 1 0 0 0 1
............................................................................................TTTTGGCCTATATTATCG............................................................................................................................................ 18 2 11 0.09 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:16057346-16057595 + dsi_15293 CCGGCCA------------------------------TCGATGTC------A---------AAGCAGAGCAAATTGTGCCCAAGGACGCGGC-AACGTAAGTAAAAAT--------AAAAACGACAA-AAATCTCCACAGTCGCTTTAAAACCAGA-TATAACAGCC-TGTCTGTGAATGTGATTCC-AAGTTACTTAAAAACTGTAGCTATGTTTATGCACAGTATT---GTGTA---------------------------------------CATTTAGATAAGGCGGAAAAATCTGGC-----ATAATTATTTATGTTGCT-----------------------------------------------------------------------------------------------------------------------------AAATAGTAATCAATTTATT-------------------------------------------------------CAACTTT----------------------------------------------------------AATG
droSec2 scaffold_7:138944-139192 + CCGGCCA------------------------------TCGATGTC------A---------AAGCAGAGCAAATTGTGCCCAAGGACGCGGC-AACGTAAGTAAAAAT--------AAAAACGA-CAAAAATCTCCACAGTCGCTTTAAAACCAGA-TATAACAGCC-TGTCTGTGAATGTGATTCC-AAGTTACTT-AAAACTGTAGCTATGTTTATGCACAGTATT---GTGTA---------------------------------------CATAAATAAAAGGCGGAAAAATCTAGC-----ATAACTACTTATGTTGCT-----------------------------------------------------------------------------------------------------------------------------AAATAGTAATCAATTTATT-------------------------------------------------------TAAATTT----------------------------------------------------------AATG
dm3 chr2L:16492002-16492307 + CCAACCA------------------------------TCGATGTC------A---------AAGCAGAGCAAATTGTGCCCAAGGACGCGGC-AACGTAAGTAAAAAT--------AAAAACGG-GA-AAATCTCCACAGTCGCTTTAAAACCAGA-GATAACAGCC-TGTCTGTGAATGTGGTTCC-AAGTTACTTAAAAACTGTAGCTATGTTTATGCACAGTATT---GTGTA---------------------------------------CATAAGGAAAAGGCGGAAAAATCTGGC-----ATTATTATTTATGTAGCT-----------------GT-------------------------------------AAAGTTCCTGAACATAAACCAAGCATTTTGATATAAAAATTCAATTTAAATTTGCGATATTCGTTTCGAAAATAGT---------------------------------------------------------------------AATTT----------------------------------------------------------AATG
droEre2 scaffold_4845:19563510-19563784 + CCGGCTG------------------------------TTGACGCC------AATGTCGCAGCAGCAGAGGAAATTGTGCCCAAGGACGCGGC-AACGTAAGTAAAAAT--------AAAAACGG-GA-AAATCTTTACAGTCGCTCTAAAACTAAC-GATA-CTGCC-CGTCTGTGAATATGCTTTC-AAGTGACTTCCAAATTGTAGCTATGTTTATGCCCAGTAAT---GT---------------------------------------------------------------------------TAAATATTGCAA----------------TTGTATGT-------------------------------------GAAGTTTCC------AAATCCAACATTTCGATGAAA----------------TGTGAAA-TCGTTTCGTAAATATTATTCAATTTATT-------------------------------------------------------CTAATAT----------------------------------------------------------AATA
droYak3 2R:4603683-4603942 - dya_454 CCGGCCG------------------------------TCAACGCC------AATGTCGCAGCAGCAGAGGAAATTGTGCCCAAGGACGCGGC-AACGTAAGTAAAA-------------AACTG-GA-AAAACTC--CAGTCGCTCTAAAACCAGC-AAT---------------GAATGTGCGTCC-AAGTGACTTCAAAATTGTAGCTATGTTTATGCACAGTATT---GTGTA-----------------------------------TAGACA----TA-----TGTAAAAATCTGGC------TAAATATTTATA----------------TTGTATGT-------------------------------------GAAGTTGCTGAACATAAA-------------------------------------------TGTTTCGTAAATATTATTCAATTTATT-------------------------------------------------------CTAATGT----------------------------------------------------------AATT
droEug1 scf7180000408961:67547-67884 + CCGGGGA------------------------------TCGACGTC------AAAGTCGAGGCGGACGAGGAAATTGTGCCCAAGGACGCGGC-AACGTAAGTACAAAA--------AA-AGCAC-GC-GATATTCCACAGTCACCTCAGAACTAAA-GATAACAGCT-AACGTGAG-ATGTGCCCTCGAAGTGACCCTCAAACTGTAG-TATGTTCATACCAAGTTAATTTA---------------------------------------------------CTA-----AATAATGGGAATAAGTACACTTTATAGCATA--T----GTGTGAATTGTTCGTCAAGTTCCTGTGTAGGCAACTAAAC-AA-----------------------------------------------------------------------GCTTGGTTAAAAGCAACCAAATTATTTATAAAAGTTCCTCTGTATCTGTATACAGTTGTTTTTTTT------------TTAAGAATTT---------------------------------------------------------AAATA
droBia1 scf7180000301468:622778-622976 + CCAGGCG------------------------------TCGACGCC------AGCGCCGCTGCGGCAGAGGAAATTGTGCCCAAGGACGCGGC-AACGTAAGTACAAAA-------AAAAAACAG-GC-GAATCCCCACAGTCGCTCTCAAACCAAC-GATAACAGCT-C--CCGAAAATGTGCCTTCGAGCTGGCGCTCAAACTGTGCAAATGTTTATGCGAAGTTA-------AA---------------------------------------CTTACAAAAAGGGTGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA
droTak1 scf7180000415914:182560-182854 + CCGGGCG------------------------------TCGACGCC------AACGTCGCAGCGGCAGAGGAAATTGTGCCCAAGGACGCGGC-AACGTAAGTAAAAA------------AACAG-GC-GAATCTCTACAGTCGCTCTAAAACCAAC-GATAACAGCA-CACCTGAAAATGTGTC-----------TCTCAAACTGCAGCCATGTTTATAGATAAAATA---TCGTA-------------------------------------------------------------------------------------------------------------AAATTATAATAAAA---ACCAGAC-AACTTGGGTGTAAAATCCAC----------------------------------------------------------------------AAACGTATTTACAAAAATCCCC------------------------------------------------TAAAACTTAGTTTATGCGCAGTTAATTTATAAAAAGTCATCAGCCAAATTTGTTTTTGATAAG
droEle1 scf7180000490579:861641-861880 - CCAG---------------------------------TCGACGCC------AACGTCGCAGCGGCAGAGGAAATTGTTCCCAAGGACGCTGC-AACGTAAGTACAAAA--------AA-AACAA-GCGGAAATCGTACAATGGCTCCTAAACCGAC-GATAACAGTT-CACCTGAAAATGTGCCTTAGAAGTGACTCATAAACTGTCGCTGTGTTTATGCGAGGTTACTTGA---------------------------------------------------TAA-----AACAGTGTGCC-----ACACTTTCTCGAATT--T-----------------------------------------------------------------------A-----------------------------------------------------AAATA-AATACAATGGATC-------------------------------------------------------AAAATCT----------------------------------------------------------ACAG
droRho1 scf7180000780143:8163-8517 + ACAG---------------------------------TGGACGCC------AACGCCGCTGCGGCTGAGGAAATTGTTCCCAAGGACGCGGC-AACGTAAGTAGAAAA--------AAAAACAC-GC-AAAATTCTACAGTTCCTACTAAACCAAC-GATAACAGTT-CACCTGAAAATGTGCCTTAGAAATGACTCTCAAACTGTCGCTATGTTTATACGAGCTTA-----TACTGTTTTACGAATAATAGTATTCTTAAAGTTGCTATATG-----------------------------------------------TTGCTACATCGGTCAAATGACAGTCAAAATTCAATAAAA---ACCTAACCAATGT------GA-----------------------------------------------------------------GTTGTA--TTAGTGAAATATTAATATAAGATAGTGCAATACAATATATCGATGGATATAAACCGGGGAAGTAATTGCAACCTT----------------------------------------------------------AACA
droFic1 scf7180000454078:426933-427131 + CCGGTCA------------------------------GCGA---------------AGCTGTTGCAGAGGAAATTGTTCCCAAGGACGCGGC-AACGTGAGTAGAAAA--------AA-ATCTG-GC-GAGTCCCCACAGTTCCTCTCAAACCAAA-GATAACGGTT-CACCTGAAAATGTGCCTGT-GAATGCTTCTAAAACTGTGACAATGTTTATGCGAAAGTTA------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTTCGTAG---------------------ACACGTTTTGTTTC--AAATA
droKik1 scf7180000302382:284360-284609 + CCGGGAG---------------------------TTGTTGGCGTTGATGCCAGCGATGCTGCGCCGGAGGAGATTGTGCCCAAGGACGCGGC-CACGTGAGTAACGCGCATATTAAAAGCACAA-GT-GCACCAAAGCAGTCGATGTAAAACTGCCAGATAACAGTTATGCCTGAATGTATGTCAATGCAGTTGCTCTGAAACTGTAGGTGTGTTTATGCGAAAGTTA---GTGTTATTTTTAGTACAAGGACGTTTTTGTGATTA------------------------------------------------------TTGCA-----------------------------------------------------------------------------------------------------------------------------AATTGGTTTTCC-----------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_12916:16061466-16061564 - CCGCCCACTCAGCAGCAGTCTCCCCAG---GACGACGTTGACGTCAAAATGGGCATCACGTCGGCAGAGGAAATTGTACCCAAGGACGCGGC-AACGTGAGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396717:296213-296301 - CCGTCG------CAGCAGTCCCCCCAACCTGCTGATATTGACGTC------AA-GCTG--ATGGCCGAGGAAATCGTACCCAAGGACGCGGC-AACGTAAGTAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 4_group3:8218829-8218949 + CAGACTG------------------------------TCGA---------------------TGCGGAGCAGATTGTTCCCAAGGACGCGGA-AACGTAAGTAGAGT-----------------------------------------------------------------------TGTACC----CAGTGAGTCTAAAACTGTATAAAAGCGTGCGCAAGG---------------------------------------TGTCTGTGTGTGTG---------------------------------------------TGT-----------------GT-------------------------------------AAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droPer2 scaffold_1:9667676-9667788 + CAGACTG------------------------------TCGA---------------------TGCGGAGCAGATTGTTCCCAAGGACGCGGGAAACGTAAGTAGAGT-----------------------------------------------------------------------TGTACCCC---AGTGAGTCTAAAACTGTATAACAGCGTGCGCAAGG---------------------------------------TGTCTGTGTGTGTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004585:4756445-4756495 + CCGA----------------------------------------------------------TGCGGAGCAAATTGTACCCAAGGATGCAGC-AACGTAAGTAATAGC--------AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12963:12984323-12984370 - GCCCC------------------------------------------------------TGATGCGGAGCAGATTGTGCCCAAAGACGCGGC-AACGTAAGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:7094191-7094268 + CCGAT-------------------------------------------------------GAAATCGAGCAAATTGTGCCCAAAGACACCGC-AACGTAAGTAAAACT--------AAA-GCAACAT-ACATTCATACACACGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_14978:702992-703046 + GTCG---------------------------------TCG---------------------ACGGTGAGCAGATTGTGCCAAAGGACGCGGC-AACGTAAGTAAACCT--------AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CCGGCCA------------------------------TCGATGTC------A---------AAGCAGAGCAAATTGTGCCCAAGGACGCGGC-AACGTAAGTAAAAAT--------AAAAACGACAA-AAATCTCCACAGTCGCTTTAAAACCAGA-TATAACAGCC-TGTCTGTGAATGTGATTCC-AAGTTACTTAAAAACTGTAGCTATGTTTATGCACAGTATT---GTGTA---------------------------------------CATTTAGATAAGGCGGAAAAATCTGGC-----ATAATTATTTATGTTGCT-----------------------------------------------------------------------------------------------------------------------------AAATAGTAATCAATTTATT-------------------------------------------------------CAACTTT----------------------------------------------------------AATGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................CAGCC-TGTCTGTGAATGTGA..........................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000000000
..........................................GTC------A---------AAGCAGAGCAAATTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
........................................................................ATTGTGCCCAAGGACGCGGC-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000100000
......................................................................................................................................................................................................................................................................................TTAGATAAGGCGGAAAAATCTGGC-----A.............................................................................................................................................................................................................................................................................................2511.00100000000100000000
.....................................TCGATGTC------A---------AAGCAGAGCAAATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
.........................................................................................................................................CAGTCGCTTTAAAACCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
.....................................................................CAAATTGTGCCCAAGGACGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000100000
..GGCCA------------------------------TCGATGTC------A---------AAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
...............................................................GCAGAGCAAATTGTGCCCAAGGACGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000100000
.....................................TCGATGTC------A---------AAGCAGAGCAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
....................................................................GCAAATTGTGCCCAAGGACGCGGC-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
.....................................................................CAAATTGTGCCCAAGGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
.........................................................................................................................................................................................................................................................................................GATAAGGCGGAAAAA.........................................................................................................................................................................................................................................................................................................1520.50100000001000000000
droSec2
CCGGCCA------------------------------TCGATGTC------A---------AAGCAGAGCAAATTGTGCCCAAGGACGCGGC-AACGTAAGTAAAAAT--------AAAAACGA-CAAAAATCTCCACAGTCGCTTTAAAACCAGA-TATAACAGCC-TGTCTGTGAATGTGATTCC-AAGTTACTT-AAAACTGTAGCTATGTTTATGCACAGTATT---GTGTA---------------------------------------CATAAATAAAAGGCGGAAAAATCTAGC-----ATAACTACTTATGTTGCT-----------------------------------------------------------------------------------------------------------------------------AAATAGTAATCAATTTATT-------------------------------------------------------TAAATTT----------------------------------------------------------AATGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................GATGTC------A---------AAGCAGAGCAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
........................................................................ATTGTGCCCAAGGACGCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
...................................................................AGCAAATTGTGCCCAAGGACGCGGC-A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
........................................................................ATTGTGCCCAAGGACGCGGC-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
....................................................................GCAAATTGTGCCCAAGGACGCGGC-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000
dm3
CCAACCA------------------------------TCGATGTC------A---------AAGCAGAGCAAATTGTGCCCAAGGACGCGGC-AACGTAAGTAAAAAT--------AAAAACGG-GA-AAATCTCCACAGTCGCTTTAAAACCAGA-GATAACAGCC-TGTCTGTGAATGTGGTTCC-AAGTTACTTAAAAACTGTAGCTATGTTTATGCACAGTATT---GTGTA---------------------------------------CATAAGGAAAAGGCGGAAAAATCTGGC-----ATTATTATTTATGTAGCT-----------------GT-------------------------------------AAAGTTCCTGAACATAAACCAAGCATTTTGATATAAAAATTCAATTTAAATTTGCGATATTCGTTTCGAAAATAGT---------------------------------------------------------------------AATTT----------------------------------------------------------AATGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......A------------------------------TCGATGTC------A---------AAGCAGAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1915.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................AAATTGTGCCCAAGGACGCGGC-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2215.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000100000000
..................................................................GAGCAAATTGTGCCCAAGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................AATTGTGCCCAAGGACGCGGC-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................GATGTC------A---------AAGCAGAGCAAATTGTGCCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................AAAGTTCCTGAACATAAACCAAGCAGA.........................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AACCA------------------------------TCGATGTC------A---------AAGCAGAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TCGATGTC------A---------AAGCAGAGCAAATTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................TGTGCCCAAGGACGCGGC-AAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................ATTGTGCCCAAGGACGCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................TTGTGCCCAAGGACGCGGC-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......A------------------------------TCGATGTC------A---------AAGCAGAGCAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
......................................................................AAATTGTGCCCAAGGACGCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000001000000000000
....................................................................GCAAATTGTGCCCAAGGACGCGGC-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................TGTGCCCAAGGACGCGGC-AACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......A------------------------------TCGATGTC------A---------AAGCAGAGCAAATTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...............................................................GCAGAGCAAATTGTGCCCAAGGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AACCA------------------------------TCGATGTC------A---------AAGCAGAGCAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...............................................................GCAGAGCAAATTGTGCCCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................C------A---------AAGCAGAGCAAATTGTGCCCAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TC------A---------AAGCAGAGCAAATTGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................AGTATT---GTGTA---------------------------------------CATAAGGAAAAGGCGG..............................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......A------------------------------TCGATGTC------A---------AAGCAGAGCAAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CCA------------------------------TCGATGTC------A---------AAGCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TCGATGTC------A---------AAGCAGAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................AGCAAATTGTGCCCAAGGACGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................AGCAAATTGTGCCCAAGGACGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.............................................................AAGCAGAGCAAATTGTGCCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAATTTAAATTTGCGATATTCGT....................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................GTGCCCAAGGACGCGGC-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................TTATTATTTATGTAGCT-----------------GT-------------------------------------AA..................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TCGATGTC------A---------AAGCAGAGCAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................TACTTAAAAACTGTAGCTATGTTTA........................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................AGAGCAAATTGTGCCCAAGGACGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................AATTGTGCCCAAGGACGCGGC-AAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TC------A---------AAGCAGAGCAAATTGTGCCCAAGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................TGCCCAAGGACGCGGC-AACCAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCGATATTCGTTTCGAAAATAG.........................................................................................................................................2511.0010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................AAGCAGAGCAAATTGTGCCCAAGGACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TCGATGTC------A---------AAGCAGAGCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.CAACCA------------------------------TCGATGTC------A---------AAGCAGAGCAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
................................................................CAGAGCAAATTGTGCCCAAGGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......A------------------------------TCGATGTC------A---------AAGCAGAGCAAATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................GCAAATTGTGCCCAAGGACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................AAGGCGGAAAAATCTGGC-----A.............................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................ATTGTGCCCAAGGACGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.............................................................AAGCAGAGCAAATTGTGCCCAAGGACGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.CAACCA------------------------------TCGATGTC------A---------AAGCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...ACCA------------------------------TCGATGTC------A---------AAGCAGAGCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.......................................GATGTC------A---------AAGCAGAGCAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
......................................................................AAATTGTGCCCAAGGACGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.....CA------------------------------TCGATGTC------A---------AAGCAGAGCAAATTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................AGCC-TGTCTGTGAATGTGGTT........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTGCGATATTCGTTTCG................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.................................................................AGAGCAAATTGTGCCCAAGGACGCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.....CA------------------------------TCGATGTC------A---------AAGCAGAGCAAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................CAAATTGTGCCCAAGGACGCGGC-AAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................AAAGTTCCTGAACATAAAGG................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................GT-------------------------------------AAAGTTCCTGAACATAAACCAAGCA...........................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................CAGA-GATAACAGCC-TGTCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CCGGCTG------------------------------TTGACGCC------AATGTCGCAGCAGCAGAGGAAATTGTGCCCAAGGACGCGGC-AACGTAAGTAAAAAT--------AAAAACGG-GA-AAATCTTTACAGTCGCTCTAAAACTAAC-GATA-CTGCC-CGTCTGTGAATATGCTTTC-AAGTGACTTCCAAATTGTAGCTATGTTTATGCCCAGTAAT---GT---------------------------------------------------------------------------TAAATATTGCAA----------------TTGTATGT-------------------------------------GAAGTTTCC------AAATCCAACATTTCGATGAAA----------------TGTGAAA-TCGTTTCGTAAATATTATTCAATTTATT-------------------------------------------------------CTAATAT----------------------------------------------------------AATASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................ATGTCGCAGCAGCAGAGGAAATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
.......................................................................AATTGTGCCCAAGGACGCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
......................................................................AAATTGTGCCCAAGGACGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
....................................................................GGAAATTGTGCCCAAGGACGCGGC-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000
.......................................................................AATTGTGCCCAAGGACGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
droYak3
CCGGCCG------------------------------TCAACGCC------AATGTCGCAGCAGCAGAGGAAATTGTGCCCAAGGACGCGGC-AACGTAAGTAAAA-------------AACTG-GA-AAAACTC--CAGTCGCTCTAAAACCAGC-AAT---------------GAATGTGCGTCC-AAGTGACTTCAAAATTGTAGCTATGTTTATGCACAGTATT---GTGTA-----------------------------------TAGACA----TA-----TGTAAAAATCTGGC------TAAATATTTATA----------------TTGTATGT-------------------------------------GAAGTTGCTGAACATAAA-------------------------------------------TGTTTCGTAAATATTATTCAATTTATT-------------------------------------------------------CTAATGT----------------------------------------------------------AATTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................TCAACGCC------AATGTCGCAGCAGCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2616.00600000000006
............................................................................................................................................................................................................................................................................................................................TATA----------------TTGTATGT-------------------------------------GAAGTTGCTGA.........................................................................................................................................................................................................2313.00300000030000
......................................................................................................................................................................................................................................................................................................................................................GT-------------------------------------GAAGTTGCTGAACATAAA-------------------------------------------TGT....................................................................................................................................................2313.00300000030000
...............................................................................................................................................................................GAATGTGCGTCC-AAGTGACTTCAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................2612.00200000020000
.............................................................................................................................................................AAT---------------GAATGTGCGTCC-AAGTGACT.............................................................................................................................................................................................................................................................................................................................................................................................................2312.00200000020000
.........................................................................................................................................................................................................................................................................................................................ATTTATA----------------TTGTATGT-------------------------------------GAAGTTGCTG..........................................................................................................................................................................................................2512.00200000020000
..........................................................................................................................................................................................................................................................................................A-----TGTAAAAATCTGGC------TAAATATTTATA----------------.................................................................................................................................................................................................................................................................2712.00220000000000
...............................................................................................................................................................................................................................................................................................................................A----------------TTGTATGT-------------------------------------GAAGTTGCTGAA........................................................................................................................................................................................................2112.00200000020000
.............................................................................................................................................................................................................................................................................................................................ATA----------------TTGTATGT-------------------------------------GAAGTTGCTGA.........................................................................................................................................................................................................2211.00100000010000
..........................................................................................................................................................GC-AAT---------------GAATGTGCGTCC-AAGTGACTTCA..........................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
.............................................................CAGCAGAGGAAATTGTGCCCAAGGACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000
................................................................................................................................................................................................................................................................................................................................................TTGTATGT-------------------------------------GAAGTTGCTGAAC.......................................................................................................................................................................................................2111.00100001000000
............................................................................................................................................................................................................................................................................................................................TATA----------------TTGTATGT-------------------------------------GAAGTTGCT...........................................................................................................................................................................................................2111.00100000010000
................................................................CAGAGGAAATTGTGCCCAAGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
..............................................................AGCAGAGGAAATTGTGCCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.............................................................................................................................................................................................................................................................................................................C------TAAATATTTATA----------------TTGTATGT-------------------------------------GAAGTTGCT...........................................................................................................................................................................................................3011.00100000010000
....................................................ATGTCGCAGCAGCAGAGGAAATTGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
.................................................................................................................................................CTAAAACCAGC-AAT---------------GAATGTGCGTCC-A....................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
..........................................................................................................................................................................................................................................................................................................................TTTATA----------------TTGTATGT-------------------------------------GAAGTTGCT...........................................................................................................................................................................................................2311.00100000010000
.......................................................................................................................................................CCAGC-AAT---------------GAATGTGCGTCC-AAGTGACT.............................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000
...............................................................................................................................................................................GAATGTGCGTCC-AAGTGACTTCA..........................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
......................................................GTCGCAGCAGCAGAGGAAATTGTGCCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.............................................................................................................................................................................................................................CAGTATT---GTGTA-----------------------------------TAGACA----T.......................................................................................................................................................................................................................................................................................................................1911.00101000000000
.............................................................................................................................................................AAT---------------GAATGTGCGTCC-AAGTGACTTCAAAAT......................................................................................................................................................................................................................................................................................................................................................................................................3011.00100000010000
......................................................................................................................................................................................................................................................................................................................................................GT-------------------------------------GAAGTTGCTGAACATAAA-------------------------------------------T......................................................................................................................................................2111.00100000010000
.........................................................................................................................................................................................................................................................................................................................ATTTATA----------------TTGTATGT-------------------------------------GAAGTTGCTGA.........................................................................................................................................................................................................2611.00100000010000
..............................................................................................................................................................AT---------------GAATGTGCGTCC-AAGTGACT.............................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
........................................ACGCC------AATGTCGCAGCAGCAGAGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
.........................................................................................................................................................AGC-AAT---------------GAATGTGCGTCC-AAG..................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
..................................................................GAGGAAATTGTGCCCAAGGACGCGGC-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
.........................................................................................................................................................................................................................................................................................................................ATTTATA----------------TTGTATGT-------------------------------------GAAGTTG.............................................................................................................................................................................................................2211.00100000010000
...........................................................................................................................................................C-AAT---------------GAATGTGCGTCC-AAGTGA...............................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
........................................................................................................................................................................................................................................................................................................................TATTTATA----------------TTGTATGT-------------------------------------GAAGTTGCT...........................................................................................................................................................................................................2511.00100000010000
.......................................................................AATTGTGCCCAAGGACGCGGC-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................TGCTGAACATAAA-------------------------------------------TGTTTCGTAA.............................................................................................................................................2311.00101000000000
.........................................................................................................................................................................................CC-AAGTGACTTCAAAATTGTAGCTATG............................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
........................................................CGCAGCAGCAGAGGAAATTGTGCCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
......................................................................AAATTGTGCCCAAGGACGCGGC-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.................................................................AGAGGAAATTGTGCCCAAGGACGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
......................................................................................................................................................ACCAGC-AAT---------------GAATGTGCGTCC-AAGTGA...............................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................GAAGTTGCTGAACATAAA-------------------------------------------T......................................................................................................................................................1911.00100000010000
.............................................................................................................................................................................................................................................................................................................................ATA----------------TTGTATGT-------------------------------------GAAGTTGCTGAAC.......................................................................................................................................................................................................2411.00100000010000
...................................................................................................................................................................................GTGCGTCC-AAGTGACTTCAAAATTGTAGCT...............................................................................................................................................................................................................................................................................................................................................................................................3011.00100000010000
.................................................................................................................................................CTAAAACCAGC-AAT---------------GAATGTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.......................................................................AATTGTGCCCAAGGACGCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000
droEug1
CCGGGGA------------------------------TCGACGTC------AAAGTCGAGGCGGACGAGGAAATTGTGCCCAAGGACGCGGC-AACGTAAGTACAAAA--------AA-AGCAC-GC-GATATTCCACAGTCACCTCAGAACTAAA-GATAACAGCT-AACGTGAG-ATGTGCCCTCGAAGTGACCCTCAAACTGTAG-TATGTTCATACCAAGTTAATTTA---------------------------------------------------CTA-----AATAATGGGAATAAGTACACTTTATAGCATA--T----GTGTGAATTGTTCGTCAAGTTCCTGTGTAGGCAACTAAAC-AA-----------------------------------------------------------------------GCTTGGTTAAAAGCAACCAAATTATTTATAAAAGTTCCTCTGTATCTGTATACAGTTGTTTTTTTT------------TTAAGAATTT---------------------------------------------------------AAATASizeHit CountTotal NormTotal
No Reads
droBia1
CCAGGCG------------------------------TCGACGCC------AGCGCCGCTGCGGCAGAGGAAATTGTGCCCAAGGACGCGGC-AACGTAAGTACAAAA-------AAAAAACAG-GC-GAATCCCCACAGTCGCTCTCAAACCAAC-GATAACAGCT-C--CCGAAAATGTGCCTTCGAGCTGGCGCTCAAACTGTGCAAATGTTTATGCGAAGTTA-------AA---------------------------------------CTTACAAAAAGGGTGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAASizeHit CountTotal NormTotal
No Reads
droTak1
CCGGGCG------------------------------TCGACGCC------AACGTCGCAGCGGCAGAGGAAATTGTGCCCAAGGACGCGGC-AACGTAAGTAAAAA------------AACAG-GC-GAATCTCTACAGTCGCTCTAAAACCAAC-GATAACAGCA-CACCTGAAAATGTGTC-----------TCTCAAACTGCAGCCATGTTTATAGATAAAATA---TCGTA-------------------------------------------------------------------------------------------------------------AAATTATAATAAAA---ACCAGAC-AACTTGGGTGTAAAATCCAC----------------------------------------------------------------------AAACGTATTTACAAAAATCCCC------------------------------------------------TAAAACTTAGTTTATGCGCAGTTAATTTATAAAAAGTCATCAGCCAAATTTGTTTTTGATAAGSizeHit CountTotal NormTotal
No Reads
droEle1
CCAG---------------------------------TCGACGCC------AACGTCGCAGCGGCAGAGGAAATTGTTCCCAAGGACGCTGC-AACGTAAGTACAAAA--------AA-AACAA-GCGGAAATCGTACAATGGCTCCTAAACCGAC-GATAACAGTT-CACCTGAAAATGTGCCTTAGAAGTGACTCATAAACTGTCGCTGTGTTTATGCGAGGTTACTTGA---------------------------------------------------TAA-----AACAGTGTGCC-----ACACTTTCTCGAATT--T-----------------------------------------------------------------------A-----------------------------------------------------AAATA-AATACAATGGATC-------------------------------------------------------AAAATCT----------------------------------------------------------ACAGSizeHit CountTotal NormTotal
No Reads
droRho1
ACAG---------------------------------TGGACGCC------AACGCCGCTGCGGCTGAGGAAATTGTTCCCAAGGACGCGGC-AACGTAAGTAGAAAA--------AAAAACAC-GC-AAAATTCTACAGTTCCTACTAAACCAAC-GATAACAGTT-CACCTGAAAATGTGCCTTAGAAATGACTCTCAAACTGTCGCTATGTTTATACGAGCTTA-----TACTGTTTTACGAATAATAGTATTCTTAAAGTTGCTATATG-----------------------------------------------TTGCTACATCGGTCAAATGACAGTCAAAATTCAATAAAA---ACCTAACCAATGT------GA-----------------------------------------------------------------GTTGTA--TTAGTGAAATATTAATATAAGATAGTGCAATACAATATATCGATGGATATAAACCGGGGAAGTAATTGCAACCTT----------------------------------------------------------AACASizeHit CountTotal NormTotal
No Reads
droFic1
CCGGTCA------------------------------GCGA---------------AGCTGTTGCAGAGGAAATTGTTCCCAAGGACGCGGC-AACGTGAGTAGAAAA--------AA-ATCTG-GC-GAGTCCCCACAGTTCCTCTCAAACCAAA-GATAACGGTT-CACCTGAAAATGTGCCTGT-GAATGCTTCTAAAACTGTGACAATGTTTATGCGAAAGTTA------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTTCGTAG---------------------ACACGTTTTGTTTC--AAATASizeHit CountTotal NormTotal
No Reads
droKik1
CCGGGAG---------------------------TTGTTGGCGTTGATGCCAGCGATGCTGCGCCGGAGGAGATTGTGCCCAAGGACGCGGC-CACGTGAGTAACGCGCATATTAAAAGCACAA-GT-GCACCAAAGCAGTCGATGTAAAACTGCCAGATAACAGTTATGCCTGAATGTATGTCAATGCAGTTGCTCTGAAACTGTAGGTGTGTTTATGCGAAAGTTA---GTGTTATTTTTAGTACAAGGACGTTTTTGTGATTA------------------------------------------------------TTGCA-----------------------------------------------------------------------------------------------------------------------------AATTGGTTTTCC-----------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
CCGCCCACTCAGCAGCAGTCTCCCCAG---GACGACGTTGACGTCAAAATGGGCATCACGTCGGCAGAGGAAATTGTACCCAAGGACGCGGC-AACGTGAGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................GTCAAAATGGGCATCACGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1918.008400022
........................................................................ATTGTACCCAAGGACGCGGC-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.003010020
.....................CCCCAG---GACGACGTTGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.003110100
.........................................CGTCAAAATGGGCATCACGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002101000
..........................................GTCAAAATGGGCATCACGTCGGCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002100010
..........................................GTCAAAATGGGCATCACGTCGGCAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
........TCAGCAGCAGTCTCCCCAG---GAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.........................................................................TTGTACCCAAGGACGCGGC-AACCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100
............CAGCAGTCTCCCCAG---GACGACGTTGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.............................................AAAATGGGCATCACGTCGGCAGAGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
................AGTCTCCCCAG---GACGACGTTGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
CCGCCCACTCAGCAGCAGTCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..................TCTCCCCAG---GACGACGTTGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
....................................GTTGACGTCAAAATGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
......................................................ATCACGTCGGCAGAGGAAATTGTACC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
......................CCCAG---GACGACGTTGACGTCAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
..............................................................GGCAGAGGAAATTGTACCCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...................CTCCCCAG---GACGACGTTGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...............................ACGACGTTGACGTCAAAATGGGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100
.................GTCTCCCCAG---GACGACGTTGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
..........................................GTCAAAATGGGCATCACGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.............................................................CGGCAGAGGAAATTGTACC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
...................................................GGCATCACGTCGGCAGAGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...................................CGTTGACGTCAAAATGGGCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
.....................................................................GAAATTGTACCCAAGGACGCGGC-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
CCGCCCACTCAGCAGCAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.................GTCTCCCCAG---GACGACGTTGACGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
..............................................AAATGGGCATCACGTCGGCAGAGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
droBip1
CCGTCG------CAGCAGTCCCCCCAACCTGCTGATATTGACGTC------AA-GCTG--ATGGCCGAGGAAATCGTACCCAAGGACGCGGC-AACGTAAGTAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
CAGACTG------------------------------TCGA---------------------TGCGGAGCAGATTGTTCCCAAGGACGCGGA-AACGTAAGTAGAGT-----------------------------------------------------------------------TGTACC----CAGTGAGTCTAAAACTGTATAAAAGCGTGCGCAAGG---------------------------------------TGTCTGTGTGTGTG---------------------------------------------TGT-----------------GT-------------------------------------AAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................GCAGATTGTTCCCAAGGACGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100000
....................................................................GCAGATTGTTCCCAAGGACGCGGA-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010000000
droPer2
CAGACTG------------------------------TCGA---------------------TGCGGAGCAGATTGTTCCCAAGGACGCGGGAAACGTAAGTAGAGT-----------------------------------------------------------------------TGTACCCC---AGTGAGTCTAAAACTGTATAACAGCGTGCGCAAGG---------------------------------------TGTCTGTGTGTGTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................GATTGTTCCCAAGGACGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
..................................................................................AGGACGCGGGAAACGTCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19180.112000020
droWil2
CCGA----------------------------------------------------------TGCGGAGCAAATTGTACCCAAGGATGCAGC-AACGTAAGTAATAGC--------AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................GGAGCAAATTGTACCCAAGGATGCAGC-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
......................................................................AAATTGTACCCAAGGATGCAGC-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
....................................................................GCAAATTGTACCCAAGGATGCAGC-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
.........................................................................TTGTACCCAAGGATGCAGC-AACCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
...............................................................GCGGAGCAAATTGTACCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
droVir3
GCCCC------------------------------------------------------TGATGCGGAGCAGATTGTGCCCAAAGACGCGGC-AACGTAAGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................GGAGCAGATTGTGCCCAAAGACGCGGC-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002001000000001000000000000000000000000000000000000000000000000000
......................................................................AGATTGTGCCCAAAGACGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002001000000000010000000000000000000000000000000000000000000000000
......................................................................AGATTGTGCCCAAAGACGCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000100000000000000000000000010000000000000000000000000000
..............................................................TGCGGAGCAGATTGTGCCCAAAGACGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002000000000000000000000000001000000001000000000000000000000000000
...CC------------------------------------------------------TGATGCGGAGCAGATTGTGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000001000000000000000000000000000000000000000000000000000
........................................................................ATTGTGCCCAAAGACGCGGC-AACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000100000000000000000000000000000000000000000000000000000
............................................................GATGCGGAGCAGATTGTGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000010000000000000000000000000000000000000000
...........................................................................GTGCCCAAAGACGCGGC-AACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000100000000000000000000000000
..................................................................GAGCAGATTGTGCCCAAAGACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000100
.CCCC------------------------------------------------------TGATGCGGAGCAGATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000010000000000000000000000000000
....C------------------------------------------------------TGATGCGGAGCAGATTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000100000000000000000000000000
.......................................................................GATTGTGCCCAAAGACGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000010000000000000000000000000000000000000000000000000
..............................................................TGCGGAGCAGATTGTGCCCAAAGACGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
....................................................................GCAGATTGTGCCCAAAGACGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
....C------------------------------------------------------TGATGCGGAGCAGATTGTGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000010000000000000000000000000000000000000000000000000
...................................................................AGCAGATTGTGCCCAAAGACGCGGC-AAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000010000000000000000000000000000000000000
...................................................................AGCAGATTGTGCCCAAAGACGCGGC-A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000010000000000000000000000000000
....................................................................GCAGATTGTGCCCAAAGACGCGGC-AACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
......................................................................AGATTGTGCCCAAAGACGCGGC-AACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000010000000000000000000000000000000000000000000000
............................................................GATGCGGAGCAGATTGTGCCCAAAGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000100000000000000000000000000000000000000000000
...........................................................TGATGCGGAGCAGATTGTGCCCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000100000000000000000000000000
droMoj3
CCGAT-------------------------------------------------------GAAATCGAGCAAATTGTGCCCAAAGACACCGC-AACGTAAGTAAAACT--------AAA-GCAACAT-ACATTCATACACACGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................AATTGTGCCCAAAGACACCGC-A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
droGri2
GTCG---------------------------------TCG---------------------ACGGTGAGCAGATTGTGCCAAAGGACGCGGC-AACGTAAGTAAACCT--------AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....................................................................GCAGATTGTGCCAAAGGACGCGGC-AA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101
...........................................................................GTGCCAAAGGACGCGGC-AACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110
.............................................................ACGGTGAGCAGATTGTGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110
....................................................................GCAGATTGTGCCAAAGGACGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101

Generated: 05/18/2015 at 11:48 PM