ID:

dsi_15270

 Coordinate:

2r:19072075-19072224 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.5 -16.3 -16.2

Flybase annnotation

exon [2r_19071819_19072074_-]; CDS [2r_19071819_19072074_-]; intron [2r_19072075_19072376_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TAGTTTTTAAGCACTTTTTGTTGACCTTGCGGCGAGTGATGAGCGCTGAGACTGAAGAGCCAAGTGCCAAAAAATTGTTGATTTCTGCATGATTCTCTCAGTGGTTTCTCTTCAATTAGATCTCTTTGGTCAGGTAGATCTCTTTTTCGATTTTCACTGCCTCGGGATTCGCCAAATGTTTAGCATTTGACGCCGGCCAGTCGCAATGTCTCGGGGGAACGACTTGGATGCGGATCTGGAGGTGGATCTC
*******************************************************************************..........(((.((((.((((((....((...((..(((((((((.....))).))))))..))...))...))))))....)))).))).........********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 M025
embryo
 M053
female body
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
...............................................................................GATTTCTGCATGATTCTCTCAGTGGT................................................................................................................................................. 26 0 1 10.00 10 9 0 0 0 0 0 0 1 0 0
.........................................................................................................TTCTCTTCAATTAGATCTCTTTGGT........................................................................................................................ 25 0 1 5.00 5 2 0 2 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................GCATGCGGAACTGTAGGTGGA.... 21 3 3 2.67 8 0 8 0 0 0 0 0 0 0 0
...............................................................................GATTTCTGCATGATTCTCTCAGT.................................................................................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TGGATGCGGATCTGGAGGTGGAT... 23 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TGTCTCGGGGGAACGACTTGGATGC................... 25 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0
...................................................................................................................................................................................................................................ATGCGGAACTGTAGGTGGAGC.. 21 3 2 1.50 3 0 3 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TGCGGAACTGTAGGTGGA.... 18 2 8 1.50 12 0 12 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TCGGGGGAACGACTTGGATGCGG................. 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CAATGTCTCGGGGGAACGACT.......................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................TTGCGGCGAGGGATGAGCGCTG.......................................................................................................................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................CACTGCCTCGGGATTCGCCAAATGTT...................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................TGCGGCGAGTGATGAGCGCTG.......................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ATGTCTCGGGGGAACGACTTGG....................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................TCTCTTCAATTAGATCTCTTTGGT........................................................................................................................ 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................TCAGGTAGATCTCTTTTTCGATTTT................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TGGATGCGGATCTGGAGGT....... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................TTGCGGCGAGTGATGAGCGCTG.......................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
......................GACCTTGCGGCGAGTGATGAGCGC............................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................TTTGTTGACCTTGCGGCGAGTGAAA................................................................................................................................................................................................................. 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TTAGCATTTGACGCCGGCCAGTCGCAA............................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................GCGAGTGATGAGCGC............................................................................................................................................................................................................ 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................GATTTCTGCATGATTCTCTCAGCGGT................................................................................................................................................. 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GCATGCGGATCTGTAGGTG...... 19 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................ATGCGGATCTGGAGGTGGATCTC 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TCGGGGGAACGACTTGGATGCGGAAA.............. 26 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
................................................CGACTGAAGATCCAAGTGC....................................................................................................................................................................................... 19 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0
..........................................................................................GATTCTCTCAGTGGT................................................................................................................................................. 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................TGATTTCTGCATGATTCTCTCAGTGGT................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................TTCTCTTCAATTAGATCTAT............................................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TGACGCCGGCCAGTCGCAATGTC........................................ 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................TGACGCCGGCCAGTCGCAATGTCTCG..................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................TAGATCTCTTTGGTCAGGTAGATC.............................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................TGATGAGCGCTGAGACTGAAGAGCCAAG.......................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TTGGATGCGGATCTGGAGGTG...... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............TTTTTGTTGACCTTGCGGCGA....................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................TTGGATGCGGATCTGGAGGTGGATCTC 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................CAGGTAGATCTCTTTTTC...................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TTGGATGCGGATCTGGAGGTGGAT... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................TTCAATTAGATCTCTTTGGTCAG..................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................CATGCGGAACTGTAGGTGGA.... 20 3 7 0.57 4 0 4 0 0 0 0 0 0 0 0
...........CACTTATAGATGACCTTGCGG.......................................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................ATGCGGAACTGTAGGTGG..... 18 2 11 0.45 5 0 5 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GCATGCGGAACTGTAGGTGG..... 20 3 13 0.38 5 0 5 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................ATGCGGAACTGTAGGTGGA.... 19 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................ATGCGGAACTGTAGGTG...... 17 2 19 0.32 6 0 6 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TGCGGAACTGTAGGTGGAGC.. 20 3 12 0.25 3 0 3 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TGCGGAACTGTAGGTGG..... 17 2 20 0.25 5 0 5 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................ATGCGGAACTGTAGGTGGAG... 20 3 14 0.21 3 0 3 0 0 0 0 0 0 0 0
.........................................AGAGCTTAGACTGAAGATC.............................................................................................................................................................................................. 19 3 14 0.21 3 0 0 0 0 0 0 0 2 0 1
........................................GAGAGCTTAGACTGAAGATC.............................................................................................................................................................................................. 20 3 5 0.20 1 0 0 0 0 0 0 0 0 1 0
.................................................................................................................................................................................................................................GTATGCGGAACTGTAGGTGGA.... 21 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TGCGGAACTGTAGGTGGAG... 19 3 20 0.15 3 0 3 0 0 0 0 0 0 0 0
...........................................................................................................................CTGTGGTCAGGTAGA................................................................................................................ 15 1 7 0.14 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................CTCTTTGGTAAGGGAGA................................................................................................................ 17 2 8 0.13 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TGCGGAACTGTAGGTGGACC.. 20 3 9 0.11 1 0 1 0 0 0 0 0 0 0 0
........................................GAGAGCTTAGACTGAAG................................................................................................................................................................................................. 17 2 10 0.10 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................GCGGAACTGTAGGTGGAGCT. 20 3 16 0.06 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................TCTCTCAGTCGCTTCTCT........................................................................................................................................... 18 2 17 0.06 1 1 0 0 0 0 0 0 0 0 0
...........................................AGCTTAGACTGAAGATCC............................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................GTGCGGAACTGTAGGTGGA.... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0
...............................................................TTCCCAAAAAATTGTTGA......................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................................................ATGCGGAACTGTAGTTGGA.... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

ATCAAAAATTCGTGAAAAACAACTGGAACGCCGCTCACTACTCGCGACTCTGACTTCTCGGTTCACGGTTTTTTAACAACTAAAGACGTACTAAGAGAGTCACCAAAGAGAAGTTAATCTAGAGAAACCAGTCCATCTAGAGAAAAAGCTAAAAGTGACGGAGCCCTAAGCGGTTTACAAATCGTAAACTGCGGCCGGTCAGCGTTACAGAGCCCCCTTGCTGAACCTACGCCTAGACCTCCACCTAGAG
**********************************************************************..........(((.((((.((((((....((...((..(((((((((.....))).))))))..))...))...))))))....)))).))).........******************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
.............................................................................................AGAGACTCACTAAAGAGAACTT....................................................................................................................................... 22 3 1 1.00 1 0 0 1
...................................................................................................TCAACAAAGAGAAGTT....................................................................................................................................... 16 1 1 1.00 1 0 1 0
.............................................................................................................................................................................................................TCCAAAGCCCCCTTGCTG........................... 18 2 1 1.00 1 0 1 0
...................................................................................................................AATCTAGAGAAACCAGTCCAT.................................................................................................................. 21 0 1 1.00 1 1 0 0
......................................................................................................................CTAGAGAAACCAGTCCATCTAGAGAA.......................................................................................................... 26 0 1 1.00 1 1 0 0
......................................................................................CGTACTAAGAGAGTCACCAAAGAGA........................................................................................................................................... 25 0 1 1.00 1 1 0 0
..............................................................TCACGGTTTTTTAACAACTAAAGACGT................................................................................................................................................................. 27 0 1 1.00 1 1 0 0
..........................................................................................................AGAGAAGTTAATCTAGAGAAA........................................................................................................................... 21 0 1 1.00 1 1 0 0
...............................................................................................................................................AAAAGCTAAAACTGACG.......................................................................................... 17 1 5 0.20 1 0 0 1
...........................................................................................................................GATACCACGCCATCTAGAG............................................................................................................ 19 3 10 0.10 1 1 0 0
..............................................................................TCTAAAGAGGTACTAAG........................................................................................................................................................... 17 2 20 0.05 1 0 1 0
................................................................AAGTTTTTTTAACAACTCAAG..................................................................................................................................................................... 21 3 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:19072025-19072274 - dsi_15270 TAGTTTT-TAAG----------------------------------CACTT-TT--------TGTTGA---CCTTGCGGCGAGTG--ATGAGCGC------------------TGAGACTG-AAGAGCCA--------------------AGTGCCAA-----AA---------------A-----ATTGTTGATTT---CTGCAT-GA--------------------TTCTCTCAGTGGTT--TCTCTT--C--AATTAGATCT-----------------CTTTGGT-CAGGTAGATCTCTTT--TT-CGATTTTC----------------------------------------------------------------------------------------------------------AC---------------------------TGCCT-CGGG--------ATTCGCCA-A-ATGTTTA--GCATTTGA---CGCCGGCCAGTCGCAATGTCTCGGGGG------AACGACTTGGATGC-GGATCTGGAGGTGGATCTC
droSec2 scaffold_9:1845442-1845691 - dse_1634 TAGTTTT-TAAG----------------------------------CACTT-TT--------TGTTGA---CCTTGCGGCGAGTG--ATGAGCGC------------------TGAGACTG-AAGAGCCA--------------------AGTGCCTA-----AA---------------A-----ATTGTTGATTT---CTGCAT-GA--------------------TTCTCTCAGTGGTT--TCTCTT--C--AATTAGATCT-----------------CTTTGGT-CAGGTAGATCTCTTT--TT-CGATTTTC----------------------------------------------------------------------------------------------------------AC---------------------------TGTCT-CGGG--------ATTCGCCA-A-ATGTTTA--GCATTTGA---CGCCGGCCAGTCGCAATGTCTCGGGGG------AACGACTTGGATGC-GGATCTGGAGGTGGATCTC
dm3 chr2R:18543534-18543787 - TAGTTTT-TAAG----------------------------------CACTT-TT--------TGTTGA---CCTTGCGGCGAGTG--ATGAGCGCT--GC-------------TGAGACTG-AAGAGCCG--------------------AGTGCCAA-----AA---------------A-----ATTGTTGATTG---CTGCAT-GA--------------------TTCTCTCAGTGGTT--TCTCTT--C--AATTAGATCT-----------------CTTTGGT-CAGATAGATCTCTTT--TT-CGAATTTC----------------------------------------------------------------------------------------------------------AC---------------------------TGCCT-CGGG--------ATTCGCCA-AAATGTTTA--GCACTTGA---CGCCGGCCAGTCGCAATGTCTCGGGGA------AACGACTTGGATGC-GGATCTGGAGGTGGATCTC
droEre2 scaffold_4845:7412894-7413148 + der_1062 TAGTTT--TAAG----------------------------------CACCT-TT--------TGCTGA---CCTTGCGGCGAGTG--ATGAGCGC------------------CGAGACTG-AAGAGCCG--------------------AGTGCCAA-----AAAA----T------GAA-----ATTGTTGATTA---CTGCAC-GA--------------------TTCTCTCAGTGGTT--TCTCTT--C--AATTAGATCT-----------------CTTTGGT-CAGGTAGATCTCTTT--TT-CGAATTTC----------------------------------------------------------------------------------------------------------AC---------------------------TGCCT-TGGG--------ATTCGCGA-AAATGTTTA--GCATTTGA---GGCTGGCCAGTCGCAATGTCTCGGGGG------AACGACTTGGATGC-GGATCTGGAGGTGGATCTC
droYak3 2R:16006037-16006284 - TAGTTTT-TAAG----------------------------------CACTTTTT--------TGTTGA---CCTTGCGGCGAGTG--ATGAGCGC------------------CGAGATTG-----------------------------AGTGCCAA-----AA---------------A----ATTTGTTGATTT---CTGCAC-GA--------------------TGCTCTCAGTGGTT--TCTCTT--C--AATGGGATCT-----------------CTTTGGT-CAGGTAGATCTCTTTG-TT-CGAATTTC----------------------------------------------------------------------------------------------------------AC---------------------------TGCCT-CGGG--------ATTCGCGA-ACATGTTTA--GCATTGGCCAGC-GTCGCCAGTCGCAATGTCTCGGGGT------AACGACTTGGATGC-GGATCTGGAGTTGGATCTC
droEug1 scf7180000409672:6475325-6475581 - TAGTTTT-TAAG----------------------------------CACTTTTT--------TGTTGA---CCTTGCGGCGAGTG--ACGAGCGC------------------TGAGACTG-AAGAGCCG--------------------AGTGCCAA-----ATAA-----------AAA-----TTTGTTGATTT---CTGCA--AA--------------------TCCTCTCAGTGCTT--TCTCTT--A--GATCCCATCT-----------------CTTTGGT-CAGGTATTTCTCTTTGATT-TTAATTTC----------------------------------------------------------------------------------------------------------AC---------------------------TGCTG-GGGG--------ATTTGCCA-AAATGTTTA--GTATTTAA---TGCTGGCCAGTCGCAATGTCTCGTAGG------AACGACTTGGATGC-AGATCTGGAGGTGGATCTC
droBia1 scf7180000302143:2109632-2109888 + TAGTTTT-TAAG----------------------------------CACTTTTT--------TGTTGA---CCTTGTGGCGAGTG--ATGAGCGC------------------TGAGACTG-AGTAGCCG--------------------AGTGCCAA-----AACA------------AA-----ATTGTTGATTT---CTGCAT-TA--------------------TTCTCTCAGT-GTT--TCTCTT--A--GACCAGATCT-----------------CTTTGGT-TAGGAACATCTCTTTGTTTTAAAATTTC----------------------------------------------------------------------------------------------------------AC---------------------------TGCCT-GGGA--------ATTTGGCA-AAATGGTTA--GCACTTAA---CGCTGGCCAGTCGCAATGCCTCGAGGA------AACGACTTGGACGC-GGACCTGGAGGTGGACCTC
droTak1 scf7180000415379:760048-760305 - TAGTTT--TAAT----------------------------------AACTTTTT--------TGTTGA---CCTTGCGGCGAGTG--ATGAGCGC------------------TGAGACTG-AGTAGCCG--------------------AGTGCCAA-----AA---------------A-----ATTGTTGATTT---CTGCAT-TA--------------------TTCTCTCAGT-GTT--TCTCTT--A--GGTCAGATCT-----------------CTTTGGT-TAGGTAGTTCTCTTTGTTT-TTCGCTTC----------------------------------------------------------------------------------------------------------AT---------------------------TGCTG---GGAAAAAAGAATTTGCCA-AAATGTTTG--GCGTTTAG---CGCTGGCCAGTCGCAATGTCTCGTGGG------AACGACTTGGATGC-GGACCTGGAGGTGGATCTC
droEle1 scf7180000491022:130169-130424 - TAGTTTT-TAAG----------------------------------CACTT-TT--------TTTTGA---CCTTGCGGCGAGAA--ATGAGCGC---GC-------------TGAGACTG-AAGTGCTG--------------------AGTGCCAA-----AAA--------------A-----ATTTTTGATTT---CTGCAT-CA--------------------TTCTCCCATGTGTT--TCTCTT--A--GCTCAGATCT-----------------CTTCGAT-AAAGCAATTCTCTTTATTA-TTAATTTC----------------------------------------------------------------------------------------------------------AC---------------------------TACTG-GGGG--------ATTTGCCA-ATTTGTTTG--GCACATAT---CGCTGGCCAGTCGCAATGTCTCGAGGG------AACGACTTGGATGC-GGATCTGGAGGTGGACCTC
droRho1 scf7180000768400:10185-10438 - TAGTTT--TAAG----------------------------------CACAC-TT--------TGTTGA---CCTTGCGGCGAGTG--ATGAGCGC------------------TGAGACTG-AAGTGCTG--------------------AGTGCCAA-----AAAA-----------G-A-----AATGTCGATTT--ACTGCAT-TA--------------------TTCTCTCAGT-GTT--TCTCTT--A--GATCAGATCT-----------------CTTTGGT-TAGGTATTTCTCTTTGTTA-TTTATTTC----------------------------------------------------------------------------------------------------------AC---------------------------TGCTG-GGGG--------ATTCGTTA-A-GTGTTTG--GCATTTAT---CGCTGGCCAGTCGCAATGCCTCGAGGG------AACGACTTGGATGC-GGATCTGGAGGTGGACCTC
droFic1 scf7180000454066:2488081-2488339 - TAGTTTT-TAAG----------------------------------CACTT-TT--------TGTTGA---CCTTGCGGCGAGTG--ATGAGCGC------------------AGAAACTGGAAGAGCTG--------------------TTTGCCAA-----ATAT----C------GAA-----ATTGTTGATTT---CTGCAA-TA--------------------TACTCTCGGT-CAT--TCTCTT--A--GATCAGATCT-----------------CTTTGTT-TAGACATTTCTCTTTGTTT-ATAATTTC----------------------------------------------------------------------------------------------------------AC---------------------------TGCTTGGGGG--------ATTTGCCA-AAATGTTTG--GCAATTAT---CGCTGGCCAGTCGCAATGTCTCGCGGA------AACGACTTGGATGC-GGATCTGGAGGTGGATCTC
droKik1 scf7180000302470:463727-463995 + TAGTTTT-TAAG----------------------------------CATTTTTT--------TGCTGA---CCTTGCGGCGAGTGAGATGAGCGTTGTGA-------------TGAGACTG-AAGAGCCG--------------------AG-GCCAAAACAAAAAA----A--ATCAAACACAGAATTGTTGATTT---CAGCATTTA--------------------CTCTCTCCGTG-TTTTTCTCTT----------------------------------TCGATTGAAGAATTTCTCTTTATT--TGAAT-----------------------------------------------------------------------------------------------------------------------------GAATTTATTAAAATGCCGCTGGG--------ATTTGCCA-AAATATTCG---------A---C-TGGGCCAGTCGCAATGTCTCGTGGG------AACGACTTGGATGC-GGATTTGGAGGTGGATCTC
droAna3 scaffold_13266:15497667-15497926 + TAGTTTTTTAAT----------------------------------CATTT-TT--------TGTTGG---CCTTGTGGCGAGTG--ATGAGCAC------------------CGAGACTG-AAGAGCCA--------------------AA-----A-----ATATTTTGC-A----AAA-----TTTGTTATTTT---TTGCAT-CA--------------------CTCTCCCAAT-ATT--TCTCTT--A--AATAAAATCTTGTT---TT-GTTATT-TTTTGGT-GAAATATTTCTCTTT--TT-CG-------------------------------------------------------------------------------------------------------------------------------TGAGTTTA--GCCT-GTTG-AG----------------TT-GACTCCCAC--AAAATTAT---TCTCAAACAGTCGCAATGTCTCGTGGG------ATCAACTTGGATGC-GGATCTGGACGTGG---TC
droBip1 scf7180000396428:1342409-1342675 + TAGTTTTTTAAT----------------------------------CACTT-TT--------TGTTGATGGCCTTGTGGCGAGTG--ATGAGCAC------------------TGAGACTG-AAGAGCCA------------------------CCAC-----AAAT-TTGCGA----ATA-----TTTGTTATTTT---TTGCAT-TA--------------------CTCTCCCAAT-TTT--TCTCTT--A--AATTAAATCTTGTT---TTAGTTATT-TTTTGGT-GAAATATTTCTCTTT--TT-CG-------------------------------------------------------------------------------------------------------------------------------TGGGTTTT--GCCT-GT------------------CAGTT-GACTACCCG--AAAATAAT---TCTCAAACAGTCGCAATGTCTCGCGCG------ATCAACTTCGATGC-GGATCTGGAGGTGAATGTC
dp5 3:4024461-4024721 - TAGTTTT-TAAG----------------------------------TAAT--TT--------TGTTGA---CCTTGGGACGAGAG--AAGA----------------------TGATAC--------------------------------ATTCCAA-----AAAA----A-----AAAC-----ATTGTTTCGTTTCGCTG----AATCTCTTTGCTTGATCTGCCGCTCTTCTGGT-GT--CTCTT--TGG--CACG-AGCCTCGCTCTTCT-GTCATCTC---------------------------------------------------------------------------------------------------------------------------------------------TTTAGTGGCTCATCGCGTGTTCA--ATCG-G------------------TGGCCA-AATTGCTTG--GCGCGCTG---TCTTGGGCAGTCGCAATGCCGAGCGAGCCGAGTAAGGAATTGGAAGA----GGTGGATGTGGACCT-
droPer2 scaffold_2:4210480-4210739 - TAGTTTT-TAAG----------------------------------TAAT--TT--------TGTTGA---CCTTGGGACGAGAG--AAGA----------------------TGATAC--------------------------------ATTCCAA-----AAAA----A------AAC-----ATTGTTTCGTTTCGCTG----AATCTCTTTGCTTGATCTGCCGCTCTTCTGGT-GT--CTCTT--TGG--CACG-AGCCTCGCTCTTCT-GTCATCTC---------------------------------------------------------------------------------------------------------------------------------------------TTTAGTGGCTCATCGCGTGCTCA--ATCG-G------------------TGGCCA-AATTGCTTG--GCGCGCTG---TCTTGGGCAGTCGCAATGCCGAGCGAGCCGAGTAAGGAATTGGAAGA----GGTGGATGTGGACCT-
droWil2 scf2_1100000004513:4096307-4096602 + TTT-----TAATTATTTTTTCTAGATTTTAAGTATATTACCATAAGCACTT-TTGTTATTGATTTTGA---CCTTGTGATGAT-G--ATCAAGAT---GTTGATGATGAGCACTA-GAC--------------------------------ATTCCAA-----AACA----A---------------ATTGAAATTT---GTTTAT-AA--------------------TTTG--------TT--TTTTTT--------------------------------------T-TTGGCAGA-CTCTTT--TG-C-------TGTCTCTCTGTTTCTCTTTATGATTAGGTTTTCTCTTCGTTGGAATTCTCTTAGGTTAATTTTTGGCTTTGGTCTTTTGGCAAAAAACTGTTAGCGCCTCAGTTGA-------------------------------------------------------------------------------------------------------------A-TTAAAAATGTTGAC-TG------ATATAGAAT-T
droVir3 scaffold_12875:13738114-13738353 - TAATTTT-TAAG----------------------------------CACCA------------ATTGA---CCCTGCAATGCGTGG-GAGAGCCA------------------TCAGTATT-TGT-----TTTTATTTTTGACGGAGATGAGCGCGAG-----CA---------------A-----GCTC-----------TGCCT-----------------------CTCTCCCTCT-CT--CTCTC--TCGCTCATA-TGCCGTGCCTCTCT-GTCGCTCT---------------------------------------------------------------------------------------------------------------------------------------------TTTGCTG------T--GAGTGTTTCTTTGGGCTGATG---------------------TGGTGTGCCGCCTGCCG---CTGCGCCCAGTCGCAATGTCAAGCGCG------CCGAACATGTTGGA-CGAGCTGGAG---------
droMoj3 scaffold_6496:9158685-9158727 - C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCGCAATGTC------A------AACGCTTCGAAGGC-AGC---CGAGTTGCAGCT-
droGri2 scaffold_15245:17502744-17502851 + TCTCTGT-CTCG----------------------------------CTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCT-GT--CTCTC--TGC--GA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG------------TGGCTATTATTGTATT--GCCTGCTT---CTGTGCCCAGTCGCAATGACAAGCGCG-------TCGAATATGTTGCATGATCTGGAG---------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TAGTTTT-TAAG----------------------------------CACTT-TT--------TGTTGA---CCTTGCGGCGAGTG--ATGAGCGC------------------TGAGACTG-AAGAGCCA--------------------AGTGCCAA-----AA---------------A-----ATTGTTGATTT---CTGCAT-GA--------------------TTCTCTCAGTGGTT--TCTCTT--C--AATTAGATCT-----------------CTTTGGT-CAGGTAGATCTCTTT--TT-CGATTTTC----------------------------------------------------------------------------------------------------------AC---------------------------TGCCT-CGGG--------ATTCGCCA-A-ATGTTTA--GCATTTGA---CGCCGGCCAGTCGCAATGTCTCGGGGG------AACGACTTGGATGC-GGATCTGGAGGTGGATCTCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................GATTT---CTGCAT-GA--------------------TTCTCTCAGTGGT........................................................................................................................................................................................................................................................................................................................................26110.001000000001009000000
..................................................................................................................................................................................................................................................T--TCTCTT--C--AATTAGATCT-----------------CTTTGGT-.......................................................................................................................................................................................................................................................................................2515.00500010000002020000
................................................................................................................................................................................................GATTT---CTGCAT-GA--------------------TTCTCTCAGT...........................................................................................................................................................................................................................................................................................................................................2312.00200000000002000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGC-GGATCTGGAGGTGGAT...2312.00200000000001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTCGGGGG------AACGACTTGGATGC-...................2512.00200000000000200000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGGGG------AACGACTTGGATGC-GG.................2311.00100000000000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGTCTCGGGGG------AACGACT...........................2111.00100000000001000000
..............................................................................................................................................................................................................................................................................................................................C----------------------------------------------------------------------------------------------------------AC---------------------------TGCCT-CGGG--------ATTCGCCA-A-ATGTT..................................................................................2611.00100000000001000000
..........................................................................TGCGGCGAGTG--ATGAGCGC------------------TG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCTCGGGGG------AACGACTTGG........................2211.00100000000001000000
.....................................................................................................................................................................................................................................................TCTCTT--C--AATTAGATCT-----------------CTTTGGT-.......................................................................................................................................................................................................................................................................................2411.00100100000000000000
.................................................................................................................................................................................................................................................................................................T-CAGGTAGATCTCTTT--TT-CGATTTT............................................................................................................................................................................................................................................................2511.00100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGC-GGATCTGGAGGT.......1911.00100000000001000000
.........................................................................TTGCGGCGAGTG--ATGAGCGC------------------TG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
..................................................................GA---CCTTGCGGCGAGTG--ATGAGCGC------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
....................................................TT--------TGTTGA---CCTTGCGGCGAGTG--AAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTA--GCATTTGA---CGCCGGCCAGTCGCAA...................................................2711.00100000000001000000
..............................................................................GCGAGTG--ATGAGCGC------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1511.00100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGC-GGATCTGGAGGTGGATCTC2311.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGGGG------AACGACTTGGATGC-GGAAA..............2611.00100000000000010000
...............................................................................................................................................................................................................GA--------------------TTCTCTCAGTGGT........................................................................................................................................................................................................................................................................................................................................1511.00100000000001000000
...............................................................................................................................................................................................TGATTT---CTGCAT-GA--------------------TTCTCTCAGTGGT........................................................................................................................................................................................................................................................................................................................................2711.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGA---CGCCGGCCAGTCGCAATGTC...............................................2311.00100100000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGA---CGCCGGCCAGTCGCAATGTCTCG............................................2611.00100000000001000000
...................................................................................................................................................................................................................................................................TAGATCT-----------------CTTTGGT-CAGGTAGATC.............................................................................................................................................................................................................................................................................2411.00100000000001000000
...................................................................................TG--ATGAGCGC------------------TGAGACTG-AAGAGCCA--------------------AG..................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATGC-GGATCTGGAGGTG......2111.00100000000001000000
.................................................TT-TT--------TGTTGA---CCTTGCGGCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATGC-GGATCTGGAGGTGGATCTC2711.00100000000001000000
...................................................................................................................................................................................................................................................................................................CAGGTAGATCTCTTT--TT-C..................................................................................................................................................................................................................................................................1811.00100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATGC-GGATCTGGAGGTGGAT...2411.00100000000001000000
.........................................................................................................................................................................................................................................................TT--C--AATTAGATCT-----------------CTTTGGT-CAG....................................................................................................................................................................................................................................................................................2311.00100000000001000000
droSec2
TAGTTTT-TAAG----------------------------------CACTT-TT--------TGTTGA---CCTTGCGGCGAGTG--ATGAGCGC------------------TGAGACTG-AAGAGCCA--------------------AGTGCCTA-----AA---------------A-----ATTGTTGATTT---CTGCAT-GA--------------------TTCTCTCAGTGGTT--TCTCTT--C--AATTAGATCT-----------------CTTTGGT-CAGGTAGATCTCTTT--TT-CGATTTTC----------------------------------------------------------------------------------------------------------AC---------------------------TGTCT-CGGG--------ATTCGCCA-A-ATGTTTA--GCATTTGA---CGCCGGCCAGTCGCAATGTCTCGGGGG------AACGACTTGGATGC-GGATCTGGAGGTGGATCTCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................AGACTG-AAGAGCCA--------------------AGTGCCTA-----.......................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
....................................................TT--------TGTTGA---CCTTGCGGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
dm3
TAGTTTT-TAAG----------------------------------CACTT-TT--------TGTTGA---CCTTGCGGCGAGTG--ATGAGCGCT--GC-------------TGAGACTG-AAGAGCCG--------------------AGTGCCAA-----AA---------------A-----ATTGTTGATTG---CTGCAT-GA--------------------TTCTCTCAGTGGTT--TCTCTT--C--AATTAGATCT-----------------CTTTGGT-CAGATAGATCTCTTT--TT-CGAATTTC----------------------------------------------------------------------------------------------------------AC---------------------------TGCCT-CGGG--------ATTCGCCA-AAATGTTTA--GCACTTGA---CGCCGGCCAGTCGCAATGTCTCGGGGA------AACGACTTGGATGC-GGATCTGGAGGTGGATCTCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGGATGC-GGATCTGGAG.........2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGGGA------AACGACTTGGATGC-GGA................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000020000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGGATGC-GGATCTGGAGG........2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000100
.................................................................TGA---CCTTGCGGCGAGTG--ATGAGCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGGATGC-GGATCTGGA..........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGCAATGTCTCGGGGA------..................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGC-GGATCTGGAGGTGGAT...2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGCAATGTCTCGGGG.........................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACTTGGATGC-GGATCTGGATC........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................TGAGCGCT--GC-------------TGAGACTG-AAGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCGGGGA------AACGACTTGGA.......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................TT--TT-CGAATTTC----------------------------------------------------------------------------------------------------------AC---------------------------TGCCT-CGGG--------A.................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................ACTT-TT--------TGTTGA---CCTTGCGGCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGGATGC-GGATCTGGAGGTG......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
................................................................TTGA---CCTTGCGGCGAGTG--ATGAGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..........................................................................TGCGGCGAGTG--ATGAGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGGATGC-GGATCTGG...........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................TT-TT--------TGTTGA---CCTTGCGGCGAGTG--A..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGC-GGATCTGGAGG........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
..................................................................GA---CCTTGCGGCGAGTG--ATGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTCGGGGA------AACGACTTGGATGC-...................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................G-AAGAGCCG--------------------AGTGCCAA-----AA---------------A-----A...............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................................................................GA---CCTTGCGGCGAGTG--ATGAGCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
...................................................................................TG--ATGAGCGCT--GC-------------TGAGACTG-AAGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.........................................................................TTGCGGCGAGTG--ATGAGCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
................................................................................GAGTG--ATGAGCGCT--GC-------------TG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCT-CGGG--------ATTCGCCA-AAATGTTTA--GC............................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATGC-GGATCTGGAGGTGGATC..2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...................................................................A---CCTTGCGGCGAGTG--ATGAGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGC-GGATCTGGAGGTG......1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGCAATGTCTCGGGGA------AACGACT...........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................G--ATGAGCGCT--GC-------------TGAGACTG-AAGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTCGCAATGTCTCGGGG.........................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
..........................................................................TGCGGCGAGTG--ATGAGCGCT--G.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
...................................................................A---CCTTGCGGCGAGTG--ATGAGCGCT--GC-------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................TGGTT--TCTCTT--C--AATT......................................................................................................................................................................................................................................................................................................................1680.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001
droEre2
TAGTTT--TAAG----------------------------------CACCT-TT--------TGCTGA---CCTTGCGGCGAGTG--ATGAGCGC------------------CGAGACTG-AAGAGCCG--------------------AGTGCCAA-----AAAA----T------GAA-----ATTGTTGATTA---CTGCAC-GA--------------------TTCTCTCAGTGGTT--TCTCTT--C--AATTAGATCT-----------------CTTTGGT-CAGGTAGATCTCTTT--TT-CGAATTTC----------------------------------------------------------------------------------------------------------AC---------------------------TGCCT-TGGG--------ATTCGCGA-AAATGTTTA--GCATTTGA---GGCTGGCCAGTCGCAATGTCTCGGGGG------AACGACTTGGATGC-GGATCTGGAGGTGGATCTCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAATGTCTCGGGGG------AACGACTTG.........................2511.0010100000
droYak3
TAGTTTT-TAAG----------------------------------CACTTTTT--------TGTTGA---CCTTGCGGCGAGTG--ATGAGCGC------------------CGAGATTG-----------------------------AGTGCCAA-----AA---------------A----ATTTGTTGATTT---CTGCAC-GA--------------------TGCTCTCAGTGGTT--TCTCTT--C--AATGGGATCT-----------------CTTTGGT-CAGGTAGATCTCTTTG-TT-CGAATTTC----------------------------------------------------------------------------------------------------------AC---------------------------TGCCT-CGGG--------ATTCGCGA-ACATGTTTA--GCATTGGCCAGC-GTCGCCAGTCGCAATGTCTCGGGGT------AACGACTTGGATGC-GGATCTGGAGTTGGATCTCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
TAGTTTT-TAAG----------------------------------CACTTTTT--------TGTTGA---CCTTGCGGCGAGTG--ACGAGCGC------------------TGAGACTG-AAGAGCCG--------------------AGTGCCAA-----ATAA-----------AAA-----TTTGTTGATTT---CTGCA--AA--------------------TCCTCTCAGTGCTT--TCTCTT--A--GATCCCATCT-----------------CTTTGGT-CAGGTATTTCTCTTTGATT-TTAATTTC----------------------------------------------------------------------------------------------------------AC---------------------------TGCTG-GGGG--------ATTTGCCA-AAATGTTTA--GTATTTAA---TGCTGGCCAGTCGCAATGTCTCGTAGG------AACGACTTGGATGC-AGATCTGGAGGTGGATCTCSizeHit CountTotal NormTotal
No Reads
droBia1
TAGTTTT-TAAG----------------------------------CACTTTTT--------TGTTGA---CCTTGTGGCGAGTG--ATGAGCGC------------------TGAGACTG-AGTAGCCG--------------------AGTGCCAA-----AACA------------AA-----ATTGTTGATTT---CTGCAT-TA--------------------TTCTCTCAGT-GTT--TCTCTT--A--GACCAGATCT-----------------CTTTGGT-TAGGAACATCTCTTTGTTTTAAAATTTC----------------------------------------------------------------------------------------------------------AC---------------------------TGCCT-GGGA--------ATTTGGCA-AAATGGTTA--GCACTTAA---CGCTGGCCAGTCGCAATGCCTCGAGGA------AACGACTTGGACGC-GGACCTGGAGGTGGACCTCSizeHit CountTotal NormTotal
No Reads
droTak1
TAGTTT--TAAT----------------------------------AACTTTTT--------TGTTGA---CCTTGCGGCGAGTG--ATGAGCGC------------------TGAGACTG-AGTAGCCG--------------------AGTGCCAA-----AA---------------A-----ATTGTTGATTT---CTGCAT-TA--------------------TTCTCTCAGT-GTT--TCTCTT--A--GGTCAGATCT-----------------CTTTGGT-TAGGTAGTTCTCTTTGTTT-TTCGCTTC----------------------------------------------------------------------------------------------------------AT---------------------------TGCTG---GGAAAAAAGAATTTGCCA-AAATGTTTG--GCGTTTAG---CGCTGGCCAGTCGCAATGTCTCGTGGG------AACGACTTGGATGC-GGACCTGGAGGTGGATCTCSizeHit CountTotal NormTotal
No Reads
droEle1
TAGTTTT-TAAG----------------------------------CACTT-TT--------TTTTGA---CCTTGCGGCGAGAA--ATGAGCGC---GC-------------TGAGACTG-AAGTGCTG--------------------AGTGCCAA-----AAA--------------A-----ATTTTTGATTT---CTGCAT-CA--------------------TTCTCCCATGTGTT--TCTCTT--A--GCTCAGATCT-----------------CTTCGAT-AAAGCAATTCTCTTTATTA-TTAATTTC----------------------------------------------------------------------------------------------------------AC---------------------------TACTG-GGGG--------ATTTGCCA-ATTTGTTTG--GCACATAT---CGCTGGCCAGTCGCAATGTCTCGAGGG------AACGACTTGGATGC-GGATCTGGAGGTGGACCTCSizeHit CountTotal NormTotal
No Reads
droRho1
TAGTTT--TAAG----------------------------------CACAC-TT--------TGTTGA---CCTTGCGGCGAGTG--ATGAGCGC------------------TGAGACTG-AAGTGCTG--------------------AGTGCCAA-----AAAA-----------G-A-----AATGTCGATTT--ACTGCAT-TA--------------------TTCTCTCAGT-GTT--TCTCTT--A--GATCAGATCT-----------------CTTTGGT-TAGGTATTTCTCTTTGTTA-TTTATTTC----------------------------------------------------------------------------------------------------------AC---------------------------TGCTG-GGGG--------ATTCGTTA-A-GTGTTTG--GCATTTAT---CGCTGGCCAGTCGCAATGCCTCGAGGG------AACGACTTGGATGC-GGATCTGGAGGTGGACCTCSizeHit CountTotal NormTotal
No Reads
droFic1
TAGTTTT-TAAG----------------------------------CACTT-TT--------TGTTGA---CCTTGCGGCGAGTG--ATGAGCGC------------------AGAAACTGGAAGAGCTG--------------------TTTGCCAA-----ATAT----C------GAA-----ATTGTTGATTT---CTGCAA-TA--------------------TACTCTCGGT-CAT--TCTCTT--A--GATCAGATCT-----------------CTTTGTT-TAGACATTTCTCTTTGTTT-ATAATTTC----------------------------------------------------------------------------------------------------------AC---------------------------TGCTTGGGGG--------ATTTGCCA-AAATGTTTG--GCAATTAT---CGCTGGCCAGTCGCAATGTCTCGCGGA------AACGACTTGGATGC-GGATCTGGAGGTGGATCTCSizeHit CountTotal NormTotal
No Reads
droKik1
TAGTTTT-TAAG----------------------------------CATTTTTT--------TGCTGA---CCTTGCGGCGAGTGAGATGAGCGTTGTGA-------------TGAGACTG-AAGAGCCG--------------------AG-GCCAAAACAAAAAA----A--ATCAAACACAGAATTGTTGATTT---CAGCATTTA--------------------CTCTCTCCGTG-TTTTTCTCTT----------------------------------TCGATTGAAGAATTTCTCTTTATT--TGAAT-----------------------------------------------------------------------------------------------------------------------------GAATTTATTAAAATGCCGCTGGG--------ATTTGCCA-AAATATTCG---------A---C-TGGGCCAGTCGCAATGTCTCGTGGG------AACGACTTGGATGC-GGATTTGGAGGTGGATCTCSizeHit CountTotal NormTotal
No Reads
droAna3
TAGTTTTTTAAT----------------------------------CATTT-TT--------TGTTGG---CCTTGTGGCGAGTG--ATGAGCAC------------------CGAGACTG-AAGAGCCA--------------------AA-----A-----ATATTTTGC-A----AAA-----TTTGTTATTTT---TTGCAT-CA--------------------CTCTCCCAAT-ATT--TCTCTT--A--AATAAAATCTTGTT---TT-GTTATT-TTTTGGT-GAAATATTTCTCTTT--TT-CG-------------------------------------------------------------------------------------------------------------------------------TGAGTTTA--GCCT-GTTG-AG----------------TT-GACTCCCAC--AAAATTAT---TCTCAAACAGTCGCAATGTCTCGTGGG------ATCAACTTGGATGC-GGATCTGGACGTGG---TCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TAGTTTTTTAAT----------------------------------CACTT-TT--------TGTTGATGGCCTTGTGGCGAGTG--ATGAGCAC------------------TGAGACTG-AAGAGCCA------------------------CCAC-----AAAT-TTGCGA----ATA-----TTTGTTATTTT---TTGCAT-TA--------------------CTCTCCCAAT-TTT--TCTCTT--A--AATTAAATCTTGTT---TTAGTTATT-TTTTGGT-GAAATATTTCTCTTT--TT-CG-------------------------------------------------------------------------------------------------------------------------------TGGGTTTT--GCCT-GT------------------CAGTT-GACTACCCG--AAAATAAT---TCTCAAACAGTCGCAATGTCTCGCGCG------ATCAACTTCGATGC-GGATCTGGAGGTGAATGTCSizeHit CountTotal NormTotal
No Reads
dp5
TAGTTTT-TAAG----------------------------------TAAT--TT--------TGTTGA---CCTTGGGACGAGAG--AAGA----------------------TGATAC--------------------------------ATTCCAA-----AAAA----A-----AAAC-----ATTGTTTCGTTTCGCTG----AATCTCTTTGCTTGATCTGCCGCTCTTCTGGT-GT--CTCTT--TGG--CACG-AGCCTCGCTCTTCT-GTCATCTC---------------------------------------------------------------------------------------------------------------------------------------------TTTAGTGGCTCATCGCGTGTTCA--ATCG-G------------------TGGCCA-AATTGCTTG--GCGCGCTG---TCTTGGGCAGTCGCAATGCCGAGCGAGCCGAGTAAGGAATTGGAAGA----GGTGGATGTGGACCT-SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................................GT-GT--CTCTT--TGG--CACG-AGCC.................................................................................................................................................................................................................................................................................................................2011.0010100000000
droPer2
TAGTTTT-TAAG----------------------------------TAAT--TT--------TGTTGA---CCTTGGGACGAGAG--AAGA----------------------TGATAC--------------------------------ATTCCAA-----AAAA----A------AAC-----ATTGTTTCGTTTCGCTG----AATCTCTTTGCTTGATCTGCCGCTCTTCTGGT-GT--CTCTT--TGG--CACG-AGCCTCGCTCTTCT-GTCATCTC---------------------------------------------------------------------------------------------------------------------------------------------TTTAGTGGCTCATCGCGTGCTCA--ATCG-G------------------TGGCCA-AATTGCTTG--GCGCGCTG---TCTTGGGCAGTCGCAATGCCGAGCGAGCCGAGTAAGGAATTGGAAGA----GGTGGATGTGGACCT-SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TTT-----TAATTATTTTTTCTAGATTTTAAGTATATTACCATAAGCACTT-TTGTTATTGATTTTGA---CCTTGTGATGAT-G--ATCAAGAT---GTTGATGATGAGCACTA-GAC--------------------------------ATTCCAA-----AACA----A---------------ATTGAAATTT---GTTTAT-AA--------------------TTTG--------TT--TTTTTT--------------------------------------T-TTGGCAGA-CTCTTT--TG-C-------TGTCTCTCTGTTTCTCTTTATGATTAGGTTTTCTCTTCGTTGGAATTCTCTTAGGTTAATTTTTGGCTTTGGTCTTTTGGCAAAAAACTGTTAGCGCCTCAGTTGA-------------------------------------------------------------------------------------------------------------A-TTAAAAATGTTGAC-TG------ATATAGAAT-TSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................TAAGCACTT-TTGTTATTGATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
droVir3
TAATTTT-TAAG----------------------------------CACCA------------ATTGA---CCCTGCAATGCGTGG-GAGAGCCA------------------TCAGTATT-TGT-----TTTTATTTTTGACGGAGATGAGCGCGAG-----CA---------------A-----GCTC-----------TGCCT-----------------------CTCTCCCTCT-CT--CTCTC--TCGCTCATA-TGCCGTGCCTCTCT-GTCGCTCT---------------------------------------------------------------------------------------------------------------------------------------------TTTGCTG------T--GAGTGTTTCTTTGGGCTGATG---------------------TGGTGTGCCGCCTGCCG---CTGCGCCCAGTCGCAATGTCAAGCGCG------CCGAACATGTTGGA-CGAGCTGGAG---------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGCAATGTCAAGCGCG------CC................................2112.002000000000000000000002000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG------CCGAACATGTTGGA-CGAGCTGGAG---------2611.001000000000000000001000000000000000000000000000000000000000000000
droMoj3
C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCGCAATGTC------A------AACGCTTCGAAGGC-AGC---CGAGTTGCAGCT-SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGC-AGC---CGAGTTGCAGC..1911.001000010
droGri2
TCTCTGT-CTCG----------------------------------CTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCT-GT--CTCTC--TGC--GA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG------------TGGCTATTATTGTATT--GCCTGCTT---CTGTGCCCAGTCGCAATGACAAGCGCG-------TCGAATATGTTGCATGATCTGGAG---------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGCAATGACAAGCGCG-------TC...............................2111.00101

Generated: 05/19/2015 at 01:31 PM