ID:

dsi_15264

 Coordinate:

3l:16491587-16491736 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-3.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CGAAGAGATTGGTGGATCGCCCTCCTCGACTTCAACTACGGTGGCTGCAGTGGTACCAGCGCGATCCGTGGTGGACACCTTCGATATACTCAAAGATGCCAATTTCTATCCGCTCTTCTAGATCGCTTGGTTTGCAAACTAAAACTTCAACCTTCACACTCTATCACCCATTTGATTTACTCTCTATCTGTTTCTTATAGACATGATCATAAGCCAAGTCAAGCCAAGCACAGCCCAGCACAATCCAGTC
***********************************************************************************************************...........(((((((..(((.....................................)))..)))))))..........************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553488
RT_0-2 hours eggs
 M023
head
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
...........................................................................................................ATCCGCTCTTCTAGATCGC............................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................CATTTGATTTACTCTCTATCT............................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0
.....................................................................................................................CTAGAGCGCTTGGTT...................................................................................................................... 15 1 3 1.00 3 0 3 0 0 0 0 0
.................................................................................................................TCTTCTAGATCGCTTGGT....................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................CTCTTGTAGATCGCTTGCT....................................................................................................................... 19 2 1 1.00 1 0 0 1 0 0 0 0
....................................................................................................................................TACAGACTAAAACCTCAACCT................................................................................................. 21 3 2 0.50 1 0 0 0 0 1 0 0
.....................................................................................................................CTAGATCGCTTGGTTC..................................................................................................................... 16 1 3 0.33 1 0 1 0 0 0 0 0
.....................................................................................................................CTAGAGCGCTTGGTTC..................................................................................................................... 16 2 20 0.20 4 0 4 0 0 0 0 0
....................................................................................................................GCTAGATCGCTTGGT....................................................................................................................... 15 1 5 0.20 1 0 1 0 0 0 0 0
................................................................................TCGGTATACTCAAAGAGG........................................................................................................................................................ 18 2 5 0.20 1 0 0 0 0 0 1 0
...................................................................................ATATACTGAACGATGCCA..................................................................................................................................................... 18 2 7 0.14 1 1 0 0 0 0 0 0
.GAAGAGGTTGGTGGA.......................................................................................................................................................................................................................................... 15 1 8 0.13 1 0 1 0 0 0 0 0
......................................................................................................................................................................................................AGACTTGATCATGAGCC................................... 17 2 8 0.13 1 0 0 0 0 0 0 1
....................................................................................................................GCTAGAGCGCTTGGTT...................................................................................................................... 16 2 17 0.12 2 0 2 0 0 0 0 0

Anti-sense strand reads

GCTTCTCTAACCACCTAGCGGGAGGAGCTGAAGTTGATGCCACCGACGTCACCATGGTCGCGCTAGGCACCACCTGTGGAAGCTATATGAGTTTCTACGGTTAAAGATAGGCGAGAAGATCTAGCGAACCAAACGTTTGATTTTGAAGTTGGAAGTGTGAGATAGTGGGTAAACTAAATGAGAGATAGACAAAGAATATCTGTACTAGTATTCGGTTCAGTTCGGTTCGTGTCGGGTCGTGTTAGGTCAG
*************************************************************...........(((((((..(((.....................................)))..)))))))..........*********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
..........................................................................................................................................................................................AGACAAAGAATATCTGTACTAGTATT...................................... 26 0 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................................................................TGGAAGTTTGAGTTAGTGGGTAA.............................................................................. 23 2 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................CGGTTAAAGATAGGCGAGAAGATCT................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0
................................................................AGGCACCACCTGTGGAAGCTATATGAGTTT............................................................................................................................................................ 30 0 1 1.00 1 0 1 0 0 0 0 0
.................................................................................GCTATATGAGTTTCTACGGT..................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................TGGAAGTTTGAGTTAGTGGGTA............................................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0
.............................GAACTTGATGCCACCG............................................................................................................................................................................................................. 16 1 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................CGTGTCGGGTCGGGTTAG..... 18 1 2 0.50 1 0 0 0 0 1 0 0
........................................................................................................................CTAGCGAACCAAACGCTT................................................................................................................ 18 1 2 0.50 1 0 0 0 1 0 0 0
......................................................................................................................ATCTAGTGAACCAAA..................................................................................................................... 15 1 12 0.25 3 0 0 0 1 0 2 0
....................GGAGAAGCTGAAGTTG...................................................................................................................................................................................................................... 16 1 7 0.14 1 1 0 0 0 0 0 0
...........CACGGAGCGGGATGAGCTG............................................................................................................................................................................................................................ 19 3 9 0.11 1 0 0 1 0 0 0 0
....................................................................................................................AGATCTAGGGAACCA....................................................................................................................... 15 1 10 0.10 1 0 0 0 0 0 1 0
.................GCGGGATGAGCTGTAGT........................................................................................................................................................................................................................ 17 2 12 0.08 1 1 0 0 0 0 0 0
....................................................................................................................GGATCTAGTGAACCAAA..................................................................................................................... 17 2 16 0.06 1 0 1 0 0 0 0 0
................................................................................................................................................................................AATAAGAGATAGACAGAGCA...................................................... 20 3 19 0.05 1 0 0 0 0 0 0 1

Generated: 04/24/2015 at 04:59 AM