ID:

dsi_15260

Coordinate:

3r:4277281-4277430 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GTTGCCTGTCGCTGATCCGTTCCTAGAGAAAGTAAATCTATCAGACCTGGGTAAGTTTTGAAACCACCCTCTTAATCCACTCCCATGTCCCCTTTTCCGCAACGGCCGTCCCGAGAAACAAACAACAATGTCTAGTTTAAATGAATTAGCAAACATACTTGGCTGGCGTTTGGTCAAGAGTCGGCCTCTGAGGATTTTCGTTGGGCACACGACGCCATCGCCAGAATATAATAGAACCTGATATGCCAAT ************************************************.............................................(((.((..((((((((((((...((..(((..(((((((((((....)))))))...))))..)))..))...)))))....))..)))))..)).)))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	M024 male body	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR902009 testis	SRR618934 dsim w501 ovaries
...GCCTGTCGCTGATCCGTT.....................................................................................................................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................CCAGAATATAATAGAACCTGATATGCC...	27	0	1	1.00	1	1	0	0	0	0	0	0	0
GTTGCCTGTCGCTGATCCGTTCCT..................................................................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0	0
.........CGCTGATCCGTTCCTAGAGAAA...........................................................................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0
.........................GAGAAAGTAAATCTATCAGACCTGGG.......................................................................................................................................................................................................	26	0	1	1.00	1	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................ATTTTCGTTGGGCACACGACGCCATCGCC............................	29	0	1	1.00	1	0	1	0	0	0	0	0	0
...................................................................................................................................................AGCAAACATACTGGGCAGGCGC.................................................................................	22	3	1	1.00	1	0	0	0	1	0	0	0	0
.................................................................................................................................................................................GAGTCGGCCTCGGAAGAT.......................................................	18	2	1	1.00	1	0	0	1	0	0	0	0	0
...........................................................................................................................AACAATGACTAGATTAAAAGAATT.......................................................................................................	24	3	1	1.00	1	0	0	1	0	0	0	0	0
....CCTGTCGCTGATCCTTTCCT..................................................................................................................................................................................................................................	20	1	1	1.00	1	1	0	0	0	0	0	0	0
...............TCCGTTCCTAGGGAAA...........................................................................................................................................................................................................................	16	1	2	0.50	1	0	0	0	0	1	0	0	0
.........................................CAGGCCTGGGTAATCTTTGA.............................................................................................................................................................................................	20	3	4	0.25	1	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................TTATAATACAACCTGATAAG.....	20	3	10	0.20	2	0	0	0	0	0	2	0	0
................................................................................................................................................................................AGAGTCGGCGTCGGAGTATT......................................................	20	3	8	0.13	1	0	0	0	0	0	0	1	0
...GCCCGTCGCTGACCCG.......................................................................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	0	0	0	1

Anti-sense strand reads

CAACGGACAGCGACTAGGCAAGGATCTCTTTCATTTAGATAGTCTGGACCCATTCAAAACTTTGGTGGGAGAATTAGGTGAGGGTACAGGGGAAAAGGCGTTGCCGGCAGGGCTCTTTGTTTGTTGTTACAGATCAAATTTACTTAATCGTTTGTATGAACCGACCGCAAACCAGTTCTCAGCCGGAGACTCCTAAAAGCAACCCGTGTGCTGCGGTAGCGGTCTTATATTATCTTGGACTATACGGTTA ************************************************.............................................(((.((..((((((((((((...((..(((..(((((((((((....)))))))...))))..)))..))...)))))....))..)))))..)).)))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	M024 male body	SRR902009 testis	GSM343915 embryo	SRR553486 Makindu_3 day-old ovaries	SRR902008 ovaries
..................................................................................................................................................................................................................CTGCGGTAGCGGTCTTATATTATCTT..............	26	0	1	1.00	1	0	1	0	0	0	0	0	0	0
........................................................AAACTTTGGTGGAAGAAT................................................................................................................................................................................	18	1	1	1.00	1	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................AACCAGAGTGCTGCAGTAG...............................	19	3	7	0.86	6	5	0	0	1	0	0	0	0	0
............................................................................................................................TGTTAGAGATCGAATTTAC...........................................................................................................	19	2	2	0.50	1	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................GGTCGCGGTCTTATATTAT.................	19	1	2	0.50	1	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................AAACCAGTGTGCTGCAGTAG...............................	20	3	3	0.33	1	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................ACCCGAGTGCTGCAGTAG...............................	18	2	3	0.33	1	1	0	0	0	0	0	0	0	0
....................................................................................................TGGCCGGCAGGGCTCC......................................................................................................................................	16	2	17	0.18	3	1	0	0	1	0	0	0	1	0
.....................................................................................................TTTCGTCAGGGCTCTTTGTT.................................................................................................................................	20	3	6	0.17	1	0	0	0	0	0	1	0	0	0
..............................................................................................AAGGCGTTGCCGGCG.............................................................................................................................................	15	1	8	0.13	1	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................AGTTCTCAGCAGGTCACTC..........................................................	19	3	12	0.08	1	0	0	0	1	0	0	0	0	0
..........................................................................................................................................TCTACTTTATCGTTTCTATG............................................................................................	20	3	14	0.07	1	0	0	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................TGCGGTCTTGAATTATCTT..............	19	3	20	0.05	1	0	0	0	0	0	0	0	0	1

Generated: 04/24/2015 at 12:17 AM