ID:

dsi_15236

 Coordinate:

3r:510993-511273 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.8 -12.4 -12.4 -12.2

Flybase annnotation

exon [3r_511274_511475_-]; CDS [3r_511274_511475_-]; exon [3r_508653_510992_-]; CDS [3r_508653_510992_-]; intron [3r_510993_511273_-]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGATGAGACTCAAATACCGGAACTGGCTCCTTTAACTACCGATATGGACAGTGAGTAAATCTAGTTTGTGTAACACAGAAATCTCGTAAGGTGGAGAATTTATATTGATGCACAAAAGAATTTCATACGAAACCCGTCCGAAGAGCGAAGTAATTTCTTCTATTTCAATACCATCATTTATGCAAAGGAAAGTTCCCAGCTGGGGAAAAGAAATCATTTCATACAAATCTCTTTGTATTAATTATATAAATAATTATCTTATATGTATATAAGTATCCGATATTTTTACTATAACTAATTAATTAATACATCGCCTTCATTCCGCCCTTAGCTCAACTGAAAACCAACCATTCGGATTCTGATGTTTTTGTCGAGTGTTTA
************************************************************************..........((((((((((((........((((((.......(((((((((..(((.....)))..))))...........))))).....))))))))))).)).)))........))********************************************************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 O001
Testis
 O002
Head
 SRR618934
dsim w501 ovaries
 M023
head
.................................................................................................................................................................................................................................................................................................................................GCGCCCGTAGCTCAACGGA......................................... 19 3 5 7.60 38 10 0 15 9 4 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................................CAACCATTCGGATTCTGAT.................. 19 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................CCCGTAGCTCAACTG.......................................... 15 1 3 1.33 4 4 0 0 0 0 0 0 0 0 0
.............ATACCGGAACTGGCTCCTTTAACTACC..................................................................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................CCAACCATTCGGATTCTGA................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....GAGACTCAAATACCGGAA....................................................................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................ATTCGGATTCTGATGTTTTT............ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................................................................ACACAGAAATCTCGTAAGG.................................................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................................TCGGATTCTGATGTTTTTGT.......... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................ATCATTTATGCAAAGGAAAG............................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................................................................................................................................................CGCCCGTAGCTCAACGGA......................................... 18 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..........................................................................ACAGAAATCTCGTGTGG.................................................................................................................................................................................................................................................................................................. 17 2 18 0.50 9 1 0 8 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................GCCCGTAGCTCAACTGGATA...................................... 20 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................CCGCCCGTAGCTCAGCTGGA........................................ 20 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..................................ACTACCGATATGGACACTC........................................................................................................................................................................................................................................................................................................................................ 19 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................GCGCCCTTAGCTTAACTGGA........................................ 20 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................CGCCCTTAGCTCAGCTGG......................................... 18 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................GCCCGTAGCTCAACGGA......................................... 17 2 4 0.25 1 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................CCCCTTAGCTCAACTGGA........................................ 18 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................CGCCCTTAGCTCAGTTG.......................................... 17 2 4 0.25 1 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................................................................................................................................CCTTAGCTCAACTGGA........................................ 16 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................TCGCCCGTAGCTCAACTGGA........................................ 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................CGCCCGTAGCTCAGCTGGA........................................ 19 3 14 0.21 3 2 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................CTGCCCGTAGCTCAACTG.......................................... 18 2 5 0.20 1 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................CCGACCTTAGCTCAGCTG.......................................... 18 2 5 0.20 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................GCGCCCGTAGCTCAAC............................................ 16 2 20 0.20 4 2 0 2 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................CGCCCGTAGCTCAGCTG.......................................... 17 2 11 0.18 2 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................GCGCCCGTAGCTCAACT........................................... 17 2 11 0.18 2 1 0 1 0 0 0 0 0 0 0
............AATACTGGGACTGGCTCC............................................................................................................................................................................................................................................................................................................................................................... 18 2 6 0.17 1 0 0 0 0 0 0 0 0 0 1
.................................................................................................................................................................................................................................................................................................................................GCGCCCGTAGCTCAACTGGA........................................ 20 3 7 0.14 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................AATTACATTTATGCACAAAAGA...................................................................................................................................................................................................................................................................... 22 3 7 0.14 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................CGCCCGTAGCTCAACGGAT........................................ 19 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................CCCCCGTAGCTCAACTG.......................................... 17 2 8 0.13 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................CCCATAGCTCAACTGGA........................................ 17 2 16 0.13 2 2 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................CTGCCCGTAGCTCAACTGGA........................................ 20 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................CATTCCGCCCTTGGC................................................. 15 1 9 0.11 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................TCGCCCGTAGCTCAACGGA......................................... 19 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................GCGCCCTTAGCTCAATTGGA........................................ 20 3 9 0.11 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................CACCCGTAGCTCAACTG.......................................... 17 2 10 0.10 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................GCGCCCGTAGCTCAACGG.......................................... 18 3 20 0.10 2 1 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................GAGGAAAAGAAATCA..................................................................................................................................................................... 15 1 20 0.10 2 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................GCGCCCTTAGCTTAACTGG......................................... 19 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................CGCCCATAGCTCAGCTGGA........................................ 19 3 20 0.10 2 0 0 2 0 0 0 0 0 0 0
....................................................................................................................................................................................................CAGCTGAGGAAAAGAA......................................................................................................................................................................... 16 1 11 0.09 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................CGCCCTTAGCTCAGTTGGA........................................ 19 3 11 0.09 1 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................................................................................................................................................TGCCCGTAGCTCAACTG.......................................... 17 2 12 0.08 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................ACCCGTCGGAAGACCG.......................................................................................................................................................................................................................................... 16 2 13 0.08 1 0 0 0 0 0 0 0 0 1 0
.GAAGAGACTCAAATA............................................................................................................................................................................................................................................................................................................................................................................. 15 1 14 0.07 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................GCGCCCTTGGCTCAACGGA......................................... 19 3 14 0.07 1 0 0 1 0 0 0 0 0 0 0
..ATGAGACTCAAATAT............................................................................................................................................................................................................................................................................................................................................................................ 15 1 19 0.05 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................CGCCCGTAGCTCAACG........................................... 16 2 19 0.05 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................ATGATGCACAAAAGA...................................................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................ACCCGTAGCTCAACTG.......................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................TGCCCGTAGCTCAACTGGA........................................ 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................GCGCCCTTAGCTCAACGA.......................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................................................................................................................................................................................TCCCGTAGCTCAACTG.......................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GCTACTCTGAGTTTATGGCCTTGACCGAGGAAATTGATGGCTATACCTGTCACTCATTTAGATCAAACACATTGTGTCTTTAGAGCATTCCACCTCTTAAATATAACTACGTGTTTTCTTAAAGTATGCTTTGGGCAGGCTTCTCGCTTCATTAAAGAAGATAAAGTTATGGTAGTAAATACGTTTCCTTTCAAGGGTCGACCCCTTTTCTTTAGTAAAGTATGTTTAGAGAAACATAATTAATATATTTATTAATAGAATATACATATATTCATAGGCTATAAAAATGATATTGATTAATTAATTATGTAGCGGAAGTAAGGCGGGAATCGAGTTGACTTTTGGTTGGTAAGCCTAAGACTACAAAAACAGCTCACAAAT
*********************************************************************************************************************************************************************************************..........((((((((((((........((((((.......(((((((((..(((.....)))..))))...........))))).....))))))))))).)).)))........))************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
..................................................................................................AAATATAACTACGTGT........................................................................................................................................................................................................................................................................... 16 0 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................................................TAAATATAACTACGTGTTTTTAGAAA.................................................................................................................................................................................................................................................................. 26 3 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TAAATATAACTACGTGTTTTTAGA.................................................................................................................................................................................................................................................................... 24 3 2 0.50 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................CGGGATTCGAGATGATTTTTG..................................... 21 3 2 0.50 1 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................AAGTTGCGCGGGAATCGAGT.............................................. 20 3 4 0.25 1 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................GGGATTCGAGATGATTTTTG..................................... 20 3 11 0.09 1 0 0 0 0 1 0 0 0
...................................................................................................................................GGGGCAGGATTCTCGC.......................................................................................................................................................................................................................................... 16 2 13 0.08 1 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................GGAAGGATGGCGGGAAT................................................... 17 2 13 0.08 1 0 1 0 0 0 0 0 0
....................................................................................................................................................................AGTTATGATAGTAAA.......................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 1 0
............................................................................................................................................................................................................................................................................................AAATGACATTGATTA.................................................................................. 15 1 20 0.05 1 0 0 0 0 0 1 0 0
................................................................................................................GTTTTATTAAAGTATG............................................................................................................................................................................................................................................................. 16 1 20 0.05 1 0 0 0 1 0 0 0 0
.................................................................................................................TTTTCTTAAAGAATG............................................................................................................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 0 0 0 1
............................................................................................................................................................................................................................................................................................................................AGTTGCGCGGGAATCGAG............................................... 18 3 20 0.05 1 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:510943-511323 - dsi_15236 CGATGAGACTCAAATACCGGAACTGGCTCCTTTAACTACCGATAT------GGACAGTGAGTAAATCTAGTTTGTGTAACACAGA---------AATCTCGTAAGGTGGAGAATTTATATT----GATGCACAAAAGAATTTCATACGAAACCCGTCCGAAGAGCGAAGTAATTTCTTCTATTTCAATACCATCATTTATGCAAAGGAAAGTTCCCAGCTGGGGAAAAGAA---------------ATCATTTC-----------ATA---C----------------------------------------------------------------------------------------------------------------------------AAATCTCTTTGTATTAATTATATAAATAATTATCTTA-TATGTATATAAGTATCCGATAT-TTTTACTATAA-----------------------------------------------------------------CTAATTAATTAATACATC---------------------------GCCTT----CATTCCGCCCTTAGCTCAACTGAAAACCAACCATTCGGATTCTGATGTTTTTGTCGAGTGTTTA
droSec2 scaffold_6:676905-677296 - CGATGAGACGCAAATACCGGAACTGGCTCCTTTAAGTACCGATAT------GGACAGTGAGTAAATCTAGTTTGTGTAACACAGA---------AATCTCGTAAGGTGGAGAATTTATATT----GATGCACAAAAGAATTTAATACGAAACGCGCCCGAAGAGGGAAGTATTTTCTTCTATTTCAATACCATCATTTATGCAAAGGAAAGGTCCCAGCTGGGGAAAAGAA---------------ATCATTTCCAAGTTTAAGAATA---C----------------------------------------------------------------------------------------------------------------------------AAATCTCTTTGTATTAATTATATAAATAATTTTCTTA-TATGTATATAAGTATCCGATAT-TTTTACTATAA-----------------------------------------------------------------CTAATTAATTAATACATC---------------------------GCCTT----CATTCCGCCCTTAGCTCAACTGAAAACCAACCATTCGGATTCGGATGTTTTTGTCGAGTGTTTA
dm3 chr3R:569855-570235 - CGATGAGACGCAAATACCGGAACTAGCTCCTTTAAGTACCGATAT------GGATAGTGAGTAAATCTTGTTTGTGTAACCCAGA---------AATCTCTTAAGGTAGAAAAATTATATT----GATGTACAAAAGAATTCCATACGAAATCCGCCAGAAGAGCGAAGTAATTTCTTCTATTTCAATACCGTCATTTATACAAAGGAAAGGGC-CAGCTGGGGAAAATAA---------------ATCATTTCCAAGTTTATGTATA---A----------------------------------------------------------------------------------------------------------------------------ATTTCTCGTTGTATTAATTATATAAATAAATTTCTTA-TATGTATTTAATTA-----------TTATTAAAA-----------------------------------------------------------------CGAATTGATTAATATATC---------------------------GCATT----CATTCCTCCCTTAGCTCAACTGAAATCCAACCATTCGGATTCGGATGTTTTTGTCGAGTGTTTA
droEre2 scaffold_4770:880315-880498 - CGATGAGACGCAAATACCGGAACTGGCTCCTTTAAGTACCGATAT------AGACAGTGAGTAAAACTAGTTTGTGTAACACAGA---------AAACTTTTCAGGTGG--------TATT----TATGTACGTAAGATTTCAATAAGAAATCCGCCCGAAAAGCGGAATGTTATCTTACATTTGAATACCAGCATTTATATAATGGAAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 3R:885389-885790 - CGATGAAATGCAAATACCGGAACTGGCTCCTTTAAGTACCGATAT------AGACAGTGAGTAAAACTAGTTTGTGTAACACAGA---------AATCTCTTCAGGTGGAAATAATATATTATATAATGTACGTAAGAATTCCATACGAA----------AGAGCGCAATGTTTTCTACCATTTGAATACCAGCATTTATTCATAGGAAAGGTCATAGCTTGGGAAAAGAA---------------AACATTTCCAGGTTTATAGATA---GA----TTTCAGAGTCGGT---------------------------------------CTTGTTATGATTTGTCAAATGT-------------------------------------------------------------ATTTTATAAATAATTTTAATA-T----ACTTAAGTACCGAATAA-TTTTTTAAAAA-----------------------------------------------------------------TTAATTAATTAATTTGTC---------------------------GTCCT----TATTCCGCACTTAGCTCAATTGAAATGCAACCATTCGGATTCTGATGTTTTTGTCGAGTGTTTA
droEug1 scf7180000409759:506239-506297 - TGACGAGACGCAAATACCAGAACTGGCTCCTTCAAGTGCCGAAAT------GGAGGGTAAGTTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302411:294766-294836 - TTAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA----TATTTCTCCCACAGCTCAAACAAAGTCGAACCATTCGGACTCGGACGTTTTCGTGGAGTGCTTA
droTak1 scf7180000415261:572744-573059 + CGACGAGACGCAAATACCAGAGCTGGCTTCCTTAAATGTCGAAAT------GGATGGTAAGTAGT---GGCTT------CACAAA-----------------------------------------------------------------------------------------------------------------------------AGTCAAACCCCACAAAAGATGAACATTGCTTAAAAG---------------------------TCGATTCAAGAGTTTTCGAGAACACATTTCCGA------TTATATACAATTTCTTACGAGCAA------------------------------------------------------------AGTTTTGTCGACAGCAATTGTATAAGCAATTTTCTT--TAAATAAATAAATATCT-------------------------------------------------------------------------------------------------ATATCTATATTTTCCATTGAAACTTACTTTACTTCAAT---TTTAACCTGCAGCTCAACTCAATTCAAACCATTCGGACTCGGATGTTTTCGTGGAGTGTTTA
droEle1 scf7180000491104:2331308-2331425 - ATATAAATTATAATCCACATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTAGAA-----------------------------------------------------------------TAAACAATTAAAATTAAC---------------------------CTTTT----TTTTTCTTTTACAGCCCATTTAAAATCGAATCTTACGGATTCTGATTGTTTTGTGGAGTGTTTA
droRho1 scf7180000778241:11738-12115 - CGACGAGTCGCAAATACCGGATCTGGCTTCTTTAAGTGCTGAAAT------GGAGGGTGAGTACAAATTGCTTA-----CACGGGAAACGCATAATTATTATTTGTTTTAAATATTTTATT---------------------------------------------------------TTGTTCTAAC-----------------------------------------------------------ACATTTTTAAAATTTTAAATAAACGA----CAACAAAATCGGT---------------------------------------ATTGC-----CTTTTAGGATGT-------------------------------------------------------------ATTTTGAATA--TTATTAATAAA----ACCTAAGAGTTAATTACGTTTTCTACAAATATGTATAATTTTTAGTTGTCTTAAAGAATGAATTGGTTCTTTTTGTAACAGAGAGTGGCGTATTTTAATTATAATATCTGTA---------------------------TCTTT----AATTTCTCCTACAGCTCAACGAAAATCAAGTCATTCGGATTCAGATGTTTTCGTGGAATGTTTA
droFic1 scf7180000453903:170244-170547 - CGACGAGACGCAAATACCTGAACTGGCTCCTCTAAGTGCCGAAAT------GGAGGGTGAGTGGATCTAT-------------------------------------------AGTTTATT---------------------------------------------------------TT---------------------------------------------------------------------------------------------GCGATTTCACAGTCTTTTAGATTTTGTTTATGCCAAAAATTG--------------TTTGCTCTGCTATGTAAAATGTTTATTGTTACTGCGCAATGTATGTAATTATGAAACAAATTCAAACAAA-------------------------------------------------------------TCTTTGGA-----------------------------------------------------------------TAAACAAATAAAT-------TATTATGCTCAGTGATAT-AATTTTTTATAAACTTCTTTCTGCCACAGCTCAACTGAAATCTAATCATTCGGACTCGGATGTTTTTGTAGAGTGTTTA
droKik1 scf7180000302634:258547-258641 - TGATGAGACTCAGATCCCGGAATTAGCCCCACTGAG---CGAAAT------GGAGGGTAAGTGAGCAGTGTTTA-----T-TAGA---------AAATTTATAATATTG--------TTAT----TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTA
droAna3 scaffold_13340:22791781-22791836 - TGACGAGACGCAAATTCCGGAACTGGCACCCCTTAGTGCCGAAAT------GGATGGTAAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396424:1066370-1066423 - TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTCATCTCAAATCTGACCACTCGACCTCTGATGTCTTTGTCGAGTGCCTC
dp5 2:24145946-24145997 - A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCCAACTGAAAGCCGATCAATCGGATGCGGATGTCTTTGTGGAGTGCATG
droPer2 scaffold_3:6918070-6918125 - CGATGAGGAGCAGATACCGGAGCTCGCTCCACTCAGTGCCGAAAT------GGAGGGTAAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004943:15121708-15121776 + TGATGAAAGTCAAATTCCTGAATTGCCACCTTTCAGTGCAGACATGATGATGGCGGGTGAGT----TCATTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12855:8309228-8309281 - CGACGAGACCCAAATACCAGAACTGGCGCCGCTCAGCGTCGAAAT------GGAAGGTGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6540:23533402-23533466 - CGACGAGACTAAAATTCCTGAACTGGCGCCACTCAGCGCCGATAT------TGAAGGTGAGTGGA-CTAGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15074:4909771-4909852 - CGATGAGACACAAATACCAGAATTGCCGCCACTCAGCGTCGACAT------GGAAGGTGAGTCAAGTGAGATTTGGAGATTCAAA---------AAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CGATGAGACTCAAATACCGGAACTGGCTCCTTTAACTACCGATAT------GGACAGTGAGTAAATCTAGTTTGTGTAACACAGA---------AATCTCGTAAGGTGGAGAATTTATATT----GATGCACAAAAGAATTTCATACGAAACCCGTCCGAAGAGCGAAGTAATTTCTTCTATTTCAATACCATCATTTATGCAAAGGAAAGTTCCCAGCTGGGGAAAAGAA---------------ATCATTTC-----------ATA---C----------------------------------------------------------------------------------------------------------------------------AAATCTCTTTGTATTAATTATATAAATAATTATCTTA-TATGTATATAAGTATCCGATAT-TTTTACTATAA-----------------------------------------------------------------CTAATTAATTAATACATC---------------------------GCCTT----CATTCCGCCCTTAGCTCAACTGAAAACCAACCATTCGGATTCTGATGTTTTTGTCGAGTGTTTASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCATTCGGATTCTGAT..................1912.00200200000000000000
.............ATACCGGAACTGGCTCCTTTAACTACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAACCATTCGGATTCTGA...................1911.00100100000000000000
....GAGACTCAAATACCGGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGGATTCTGATGTTTTT............2011.00100100000000000000
..............................................................................ACACAGA---------AATCTCGTAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGATTCTGATGTTTTTGT..........2011.00101000000000000000
...............................................................................................................................................................................................ATCATTTATGCAAAGGAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000100000000000
..ATGAGACTCAAATAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15190.05100000001000000000
droSec2
CGATGAGACGCAAATACCGGAACTGGCTCCTTTAAGTACCGATAT------GGACAGTGAGTAAATCTAGTTTGTGTAACACAGA---------AATCTCGTAAGGTGGAGAATTTATATT----GATGCACAAAAGAATTTAATACGAAACGCGCCCGAAGAGGGAAGTATTTTCTTCTATTTCAATACCATCATTTATGCAAAGGAAAGGTCCCAGCTGGGGAAAAGAA---------------ATCATTTCCAAGTTTAAGAATA---C----------------------------------------------------------------------------------------------------------------------------AAATCTCTTTGTATTAATTATATAAATAATTTTCTTA-TATGTATATAAGTATCCGATAT-TTTTACTATAA-----------------------------------------------------------------CTAATTAATTAATACATC---------------------------GCCTT----CATTCCGCCCTTAGCTCAACTGAAAACCAACCATTCGGATTCGGATGTTTTTGTCGAGTGTTTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTCGGATGTTTTTGTC.........1911.0010010
dm3
CGATGAGACGCAAATACCGGAACTAGCTCCTTTAAGTACCGATAT------GGATAGTGAGTAAATCTTGTTTGTGTAACCCAGA---------AATCTCTTAAGGTAGAAAAATTATATT----GATGTACAAAAGAATTCCATACGAAATCCGCCAGAAGAGCGAAGTAATTTCTTCTATTTCAATACCGTCATTTATACAAAGGAAAGGGC-CAGCTGGGGAAAATAA---------------ATCATTTCCAAGTTTATGTATA---A----------------------------------------------------------------------------------------------------------------------------ATTTCTCGTTGTATTAATTATATAAATAAATTTCTTA-TATGTATTTAATTA-----------TTATTAAAA-----------------------------------------------------------------CGAATTGATTAATATATC---------------------------GCATT----CATTCCTCCCTTAGCTCAACTGAAATCCAACCATTCGGATTCGGATGTTTTTGTCGAGTGTTTASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........GCAAATACCGGAACTAGCTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2119.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005010300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................TATACAAAGGAAAGGGC-CAGCTGGGGAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................2915.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CAAATACCGGAACTAGCTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AAATACCGGAACTAGCTCCTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CGCAAATACCGGAACTAGCTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AAATACCGGAACTAGCTCCTTTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000
..........CAAATACCGGAACTAGCTCCTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CAAATACCGGAACTAGCTCCTTTAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAACCATTCGGATTCGGA...................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AATACCGGAACTAGCTCCTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........GCAAATACCGGAACTAGCTCCTTTAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CGATGAGACGCAAATACCGGAACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCTTA-TATGTATTTAATTA-----------TTA.............................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................CCAGA---------AATCTCTTAAGGTAGAAAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CAAATACCGGAACTAGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTGAAATCCAACCATTCGG..........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGATTCGGATGTTTTTGT..........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAAAA-----------------------------------------------------------------CGAATTGATTAATATA......................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................GAAAGGGC-CAGCTGGGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATTCGGATTCGGATGT................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................ATACAAAGGAAAGGGC-CAGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGATTCGGATGTTTTTGTC.........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......ACGCAAATACCGGAACTAGCTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CGCAAATACCGGAACTAGCTCCTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCATTCGGATTCGGATG.................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACTGAAATCCAACCA...............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCGGATTCGGATGTT...............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATC---------------------------GCATT----CATTCCTCCCTTAG..................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAACCATTCGGATTCGGATGT................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAACCATTCGGATTCGGATG.................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CTAGCTCCTTTAAGTACCGATAT------GGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................AGTAAATCTTGTTTGTGTAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAATTA-----------TTATTAAAA-----------------------------------------------------------------CGA...................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................CCCAGA---------AATCTCTTAAGGTAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................AAAGGAAAGGGC-CAGCTGGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........AAATACCGGAACTAGCTCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AAATACCGGAACTAGCTCACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................TTGTATTAATTATATAAATCT..................................................................................................................................................................................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
droEre2
CGATGAGACGCAAATACCGGAACTGGCTCCTTTAAGTACCGATAT------AGACAGTGAGTAAAACTAGTTTGTGTAACACAGA---------AAACTTTTCAGGTGG--------TATT----TATGTACGTAAGATTTCAATAAGAAATCCGCCCGAAAAGCGGAATGTTATCTTACATTTGAATACCAGCATTTATATAATGGAAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
CGATGAAATGCAAATACCGGAACTGGCTCCTTTAAGTACCGATAT------AGACAGTGAGTAAAACTAGTTTGTGTAACACAGA---------AATCTCTTCAGGTGGAAATAATATATTATATAATGTACGTAAGAATTCCATACGAA----------AGAGCGCAATGTTTTCTACCATTTGAATACCAGCATTTATTCATAGGAAAGGTCATAGCTTGGGAAAAGAA---------------AACATTTCCAGGTTTATAGATA---GA----TTTCAGAGTCGGT---------------------------------------CTTGTTATGATTTGTCAAATGT-------------------------------------------------------------ATTTTATAAATAATTTTAATA-T----ACTTAAGTACCGAATAA-TTTTTTAAAAA-----------------------------------------------------------------TTAATTAATTAATTTGTC---------------------------GTCCT----TATTCCGCACTTAGCTCAATTGAAATGCAACCATTCGGATTCTGATGTTTTTGTCGAGTGTTTASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................GGAACTGGCTCCTTTAAGTACCGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2523.50700000000007
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCAACCATTCGGATTCTGAT..................2311.00110000000000
droEug1
TGACGAGACGCAAATACCAGAACTGGCTCCTTCAAGTGCCGAAAT------GGAGGGTAAGTTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TTAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA----TATTTCTCCCACAGCTCAAACAAAGTCGAACCATTCGGACTCGGACGTTTTCGTGGAGTGCTTASizeHit CountTotal NormTotal
No Reads
droTak1
CGACGAGACGCAAATACCAGAGCTGGCTTCCTTAAATGTCGAAAT------GGATGGTAAGTAGT---GGCTT------CACAAA-----------------------------------------------------------------------------------------------------------------------------AGTCAAACCCCACAAAAGATGAACATTGCTTAAAAG---------------------------TCGATTCAAGAGTTTTCGAGAACACATTTCCGA------TTATATACAATTTCTTACGAGCAA------------------------------------------------------------AGTTTTGTCGACAGCAATTGTATAAGCAATTTTCTT--TAAATAAATAAATATCT-------------------------------------------------------------------------------------------------ATATCTATATTTTCCATTGAAACTTACTTTACTTCAAT---TTTAACCTGCAGCTCAACTCAATTCAAACCATTCGGACTCGGATGTTTTCGTGGAGTGTTTASizeHit CountTotal NormTotal
No Reads
droEle1
ATATAAATTATAATCCACATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTAGAA-----------------------------------------------------------------TAAACAATTAAAATTAAC---------------------------CTTTT----TTTTTCTTTTACAGCCCATTTAAAATCGAATCTTACGGATTCTGATTGTTTTGTGGAGTGTTTASizeHit CountTotal NormTotal
No Reads
droRho1
CGACGAGTCGCAAATACCGGATCTGGCTTCTTTAAGTGCTGAAAT------GGAGGGTGAGTACAAATTGCTTA-----CACGGGAAACGCATAATTATTATTTGTTTTAAATATTTTATT---------------------------------------------------------TTGTTCTAAC-----------------------------------------------------------ACATTTTTAAAATTTTAAATAAACGA----CAACAAAATCGGT---------------------------------------ATTGC-----CTTTTAGGATGT-------------------------------------------------------------ATTTTGAATA--TTATTAATAAA----ACCTAAGAGTTAATTACGTTTTCTACAAATATGTATAATTTTTAGTTGTCTTAAAGAATGAATTGGTTCTTTTTGTAACAGAGAGTGGCGTATTTTAATTATAATATCTGTA---------------------------TCTTT----AATTTCTCCTACAGCTCAACGAAAATCAAGTCATTCGGATTCAGATGTTTTCGTGGAATGTTTASizeHit CountTotal NormTotal
No Reads
droFic1
CGACGAGACGCAAATACCTGAACTGGCTCCTCTAAGTGCCGAAAT------GGAGGGTGAGTGGATCTAT-------------------------------------------AGTTTATT---------------------------------------------------------TT---------------------------------------------------------------------------------------------GCGATTTCACAGTCTTTTAGATTTTGTTTATGCCAAAAATTG--------------TTTGCTCTGCTATGTAAAATGTTTATTGTTACTGCGCAATGTATGTAATTATGAAACAAATTCAAACAAA-------------------------------------------------------------TCTTTGGA-----------------------------------------------------------------TAAACAAATAAAT-------TATTATGCTCAGTGATAT-AATTTTTTATAAACTTCTTTCTGCCACAGCTCAACTGAAATCTAATCATTCGGACTCGGATGTTTTTGTAGAGTGTTTASizeHit CountTotal NormTotal
No Reads
droKik1
TGATGAGACTCAGATCCCGGAATTAGCCCCACTGAG---CGAAAT------GGAGGGTAAGTGAGCAGTGTTTA-----T-TAGA---------AAATTTATAATATTG--------TTAT----TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTASizeHit CountTotal NormTotal
No Reads
droAna3
TGACGAGACGCAAATTCCGGAACTGGCACCCCTTAGTGCCGAAAT------GGATGGTAAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTCATCTCAAATCTGACCACTCGACCTCTGATGTCTTTGTCGAGTGCCTCSizeHit CountTotal NormTotal
No Reads
dp5
A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCCAACTGAAAGCCGATCAATCGGATGCGGATGTCTTTGTGGAGTGCATGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGATGCGGATGTCTTTG...........1911.0010100000000
droPer2
CGATGAGGAGCAGATACCGGAGCTCGCTCCACTCAGTGCCGAAAT------GGAGGGTAAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TGATGAAAGTCAAATTCCTGAATTGCCACCTTTCAGTGCAGACATGATGATGGCGGGTGAGT----TCATTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................TTCAGTGCAGACATGATGATGGCGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100001
droVir3
CGACGAGACCCAAATACCAGAACTGGCGCCGCTCAGCGTCGAAAT------GGAAGGTGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................TGGCGCCGCTCAGCGTCGAAAT------GGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000001000000000000000000000000000
.GACGAGACCCAAATACCAGAACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000100000000000000000000000000000000
...................GAACTGGCGCCGCTCAGCGTCGAAAT------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000100000000000000000000000000
droMoj3
CGACGAGACTAAAATTCCTGAACTGGCGCCACTCAGCGCCGATAT------TGAAGGTGAGTGGA-CTAGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CGATGAGACACAAATACCAGAATTGCCGCCACTCAGCGTCGACAT------GGAAGGTGAGTCAAGTGAGATTTGGAGATTCAAA---------AAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 02:38 PM