ID:

dsi_15228

 Coordinate:

x:12011411-12011560 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-41.3 -41.0 -41.0

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GCCACCGGTTCGTTTCTCAAGCGCAATGTCGGAGTGCCCGAGGGCTACAGGTTGGTAATGGTAAACAGCCACTTGCTGGCTGGGGTTATCACCCCATTCGATTCGTTGCGATCTCTGTGTTATCTGTGTCCGCTTGCGGTAAACAAATTCAAATGCAATCGATGCACTGCAGCAGGGTCAACAATCGCTGATAAGCGCTGTACACTCGTTGGTGCCCTCAAAGCCATCGAAATCTGTAATTCAAGTCAAG
**************************************************((((((((((((.....)))).))))))))((((((....))))))........((((.((((.((((((....(((((.((.(((((...............))))).)))))))..))).)))))))..))))((((....))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M025
embryo
 GSM343915
embryo
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body		 O002
Head
 SRR553487
NRT_0-2 hours eggs
......................ACAATGTCGGAGTGCCCGA................................................................................................................................................................................................................. 19 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.........................ATGTCGGAGTGCCCGAGGG.............................................................................................................................................................................................................. 19 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
................TCAAGCGCAATGTCGGAGTGCCCGAGG............................................................................................................................................................................................................... 27 0 1 2.00 2 0 0 0 0 0 1 1 0 0 0
.................CAAGCGCAATGTCGGAGTGCCCGAG................................................................................................................................................................................................................ 25 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
...................AGCGCAATGTCGGAGTGCCC................................................................................................................................................................................................................... 20 0 1 2.00 2 0 0 1 0 0 0 0 1 0 0
.........TCGTTTCTCAAGCGCAATGTCGGAG........................................................................................................................................................................................................................ 25 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0
.....................CGCAAAGTCGGAGTGCCCG.................................................................................................................................................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................GTCGGAGTGCCCGAGGGC............................................................................................................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................CAATGTCGGAGTGCCCGAGGG.............................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........TTCGTTTCTCAAGCGCAATGTCG........................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
......................GCAATGTCGGAGTGCCCGAGGGCTA........................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...........................................GCTACAGGTTGGTAATGGTAAA......................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
......................GCAATGTCGGAGTGCCCGTGG............................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................AATGTCGGAGTGCCCGAGG............................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.....................CGCAATGTCGGAGTGCCCG.................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................AATGTCGGAGTGCCCGAGGGCTAC.......................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................GAGTGCCCGAGGGCTACAGGTT..................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................ACCCCATTCGATTCGTTGCGATC......................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................AATCGCAATGTCGGCGTGCCCGAG................................................................................................................................................................................................................ 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............TTCTCAAGCGCAATGTCGGAGTGCCC................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................CGCAATGTCGGAGTGCCCGAGG............................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............CTCAAGCGCAATGTCGGAGTG...................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
....................................................................................................TTTCGTTGAGATCTCGGTGTT................................................................................................................................. 21 3 6 0.17 1 0 0 0 1 0 0 0 0 0 0
........................................................................................................GCTGCGATCTCTGTGGTA................................................................................................................................ 18 2 10 0.10 1 0 0 0 0 0 0 0 0 0 1
............................................................................................................................TGTGTCCTCTTGCAGTAAAAA......................................................................................................... 21 3 11 0.09 1 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................GCGTGAACAATCTCTGATA......................................................... 19 3 13 0.08 1 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

CGGTGGCCAAGCAAAGAGTTCGCGTTACAGCCTCACGGGCTCCCGATGTCCAACCATTACCATTTGTCGGTGAACGACCGACCCCAATAGTGGGGTAAGCTAAGCAACGCTAGAGACACAATAGACACAGGCGAACGCCATTTGTTTAAGTTTACGTTAGCTACGTGACGTCGTCCCAGTTGTTAGCGACTATTCGCGACATGTGAGCAACCACGGGAGTTTCGGTAGCTTTAGACATTAAGTTCAGTTC
**************************************************((((((((((((.....)))).))))))))((((((....))))))........((((.((((.((((((....(((((.((.(((((...............))))).)))))))..))).)))))))..))))((((....))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
.GGTGCCCAAGCCAGGAGTTC..................................................................................................................................................................................................................................... 20 3 2 1.00 2 2 0 0 0 0 0 0 0 0
........................................................................................................................ATGGACACAGCCAAACGCCAT............................................................................................................. 21 3 3 1.00 3 1 1 0 0 1 0 0 0 0
........................................................................................................................ATGGACACAGCCAAACGCCA.............................................................................................................. 20 3 5 0.60 3 0 3 0 0 0 0 0 0 0
...........................................................................................................................GACACAGCCAAACGCCAT............................................................................................................. 18 2 7 0.43 3 1 1 1 0 0 0 0 0 0
.....................................................................................AATTGTGGGGTAATCTAAGCC................................................................................................................................................ 21 3 3 0.33 1 0 0 1 0 0 0 0 0 0
.................................................................................................................................GGCGAACGTCATTTG.......................................................................................................... 15 1 7 0.29 2 0 0 0 2 0 0 0 0 0
..........................ACAGTCTCAAGGGCTTCCG............................................................................................................................................................................................................. 19 3 9 0.22 2 0 1 1 0 0 0 0 0 0
.GGTGCCCAAGCCAGGAGTT...................................................................................................................................................................................................................................... 19 3 14 0.14 2 2 0 0 0 0 0 0 0 0
...................................................................................................................................................................CGTGAAGTCGTCCCA........................................................................ 15 1 9 0.11 1 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................CAGTTGTTAATGACTATT........................................................ 18 2 9 0.11 1 1 0 0 0 0 0 0 0 0
.....................................................TCATCACCATTTGTCGGTTA................................................................................................................................................................................. 20 3 11 0.09 1 1 0 0 0 0 0 0 0 0
..........................................................................................................ACGCTGGAGACCCAATA............................................................................................................................... 17 2 11 0.09 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................AGACACAGGCGCTGGCCAT............................................................................................................. 19 3 11 0.09 1 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................CCACCACGGGAGTCTCG.......................... 17 2 15 0.07 1 0 0 0 0 0 1 0 0 0
..........................ACAGCCTCATGGACTC................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0
..................................................................TGGGTGAACGATCGACC....................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 1 0 0 0
..GTGGCCAAGCCAGGAGGT...................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0
...............GAGTTCTCGTTACGGCC.......................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 1 0 0 0
........AAGGAAAGAGTTGGCATTA............................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:12011361-12011610 - dsi_15228 GCCACCGGTTCGTTTCTCAAGCGCAATGTCGGAGTGCCCGAGGGCTACAGGTTGGTAATGGTA-AACAGC--------------CACTTG--CTGG-CT-GGGGTTATCA----CCCCA-----TTC-----G-----------------------------------AT---------------------TCGTTGCGATCTCTGTG----------TTATC------------------------TGT--GT----------------------------CCGCTTGCGGTAAACAAA----TTCAAATGCAATC-GATGCACTGCA---------------------GC-AGGGTCAACAA--TCG----CTGATAAGCGCTGTACAC-----------------TCGTTGGT-----GC----------------CCTC-------------------------------------------------------AAAGCCATC-----------------------------------GAAATC--TGTAATTCAAGTCA------------------------------------------------------------AG
droSec2 scaffold_21:408031-408279 - GCCACCGGTTCGTTTCTCAAGCGCAATGTCGGAGTGCCCGAGGGCTACAGGTTGGTAATGGTA-AACAGC--------------CACTTG--CTCG-CT-GGGGTTATCA----CCCCA-----TTC-----G-----------------------------------AT---------------------TCGTTGCGATCTCTGTG----------TTATC------------------------TGT--GC----------------------------CCACTTGCGGTAAACAAAA---TTCAAATGCAATC-GATGCACTGCA---------------------GC-AGGGTCAACAA--TCG----CTGATAAGCGCTGTACAC-----------------TCG--GGT-----GC----------------CCTC-------------------------------------------------------AAAGCCATC-----------------------------------GAAATC--TGTAATTCAAGTCA------------------------------------------------------------AG
dm3 chrX:12653306-12653545 - GCCACCGGTTCGTTCCTCAAGCGCAATGTCGGCGTGCCCGAGGGCTACAGGTTGGTAA-------ACAGC--------------CAATGG--CTGG-CTGTGGGTTATCA----CCCCA-----TTC-----G-----------------------------------AT---------------------TTGTTGCGATCTGTGTG----------TTATC------------------------TGT--GT----------------------------CCGCTTGCGGTAAACAAA----TTCAAATGCAATC-GATGCACTGCA---------------------GC-AGGGTCAACAA--TCG----CTGATAAGATTGAT----------------------CGTTTGT-----GA----------------ACTC-------------------------------------------------------AAAGCCCAC-----------------------------------GAAATC--TGTAATTCAAGTCA------------------------------------------------------------AG
droEre2 scaffold_4690:14194389-14194657 + GCCACCGGATCGTTCCTCAAGCGCAATGTCGGCGTGCCCGAGGGCTACAGGTTGGTAT-GCTA--ACAGC--------------CT------CTGG-CT-GGGGTTATCA----CCCCA-----TTC-----G-----------------------------------AT---------------------GCGATGCGATCTCG--G----------TTATC------------------------TGA--GT----------------------------CCGCCTGCGGTAAACAAA----TTTCAGTGCAATC-GATGCACTGCG---------------------GC-AGGGTCAACAA--TCG----CTGATAAGCCCTGGAT---GCGTCTATATGTACATACATATGT-----AC----------------GCCC-------------------------------------------------------AAAGGCATC-----------------------------------AAAATC--TGTAATTCAAGTCGTATCTATG---CGTTA--------------------------------------------AG
droYak3 X:6935044-6935317 - GCCACCGGATCGTTCCTCAAGCGCAATGTCGGAGTGACGGAGGGCTACAGGTTGGTAT-GATA--ACAGC--------------CT------CTCG-TT-GGGGTTATCA----CCCCA-----TTCCATTC-----CATTCGA----------TTCGATTCGATTTGAT---------------------TCGTTGCTATCTCG--G----------TTATC------------------------TGG--GTC-----------C---------------CCGCTTGCGGTAAACAAA----TTAAACTGCAATC-GATGCACTGAG---------------------AC-AGGGTCAACAA--ACG----CTGATAAGCCCTGT---T-------------------GTATGC-----AC----------------ACTC-AAA--------------------TCCAATCAAAT-CAA----------------------ATC-----------------------------------AAAATG--TGTAATTTAAGTACA-------------------------------------------------------------
droEug1 scf7180000409110:1056275-1056557 - GCCACCGGATCGTTCCTTAAGCGCAATGACGGAGTGCCCGAGGGCTACAGGTTGGTAT------------------------------TA--TTGG-CG-GAGGTTATCA----ATCGA-----TAC-----G-----------------------------------TT----------CGAAAACCGAACCGATTCGATCTCT--C----------TTATC------------------------TGG--GGC-----------A---------------ACGTTTGCGGTAAACAAT--TTTTTAACTGCAATC-GATGCACTGAG---------------------GC-AGGGTCAACAACATCG----CTGATAAGCTCAGAATATAG---------GTATA-------GAATATA--T-----T---ATGAT-------------------------------------------AATA-----ACATTGCTAAAGTCATGAAA------------A----------TCAAAATGTGAGGTCTGTGTAACTCAACCCAG-------------------------------------------------------------
droBia1 scf7180000298389:249299-249626 - GCCACCGGCTCGTTCCTCAAGCGCAATGTCGGCGTGCCCGAGGGCTACAGGTTGGTAT-AGCA--ACAGTGGGAGTACCTACGTCT------CCGC-CC-GGGGTTATCA----CTCCA-----TCCCATCC-----CATCGCA----------ACCGATCCGATCTGATCCGATCCATTCGAAAA-CGAGCCGACTCGATCTCT--G----------TTATC------------------------TGG--GC----------------------------GCGGTTGCGGTAAACAAG----TTAAACTGCAATC-GATGCACTGCG---------------------GC-AGGGTCAACAC--TCG----CTGATAAGCCCAGA---TAG---------CTAT--------GTACA---------TTTCCATGTT-------------------------------------------CAC------ACACGGCTAAAGTCATCAAA------------A----------TCGAATCGCGGGGTC--CGTAATTCGAGCCGG-------------------------------------------------------------
droTak1 scf7180000413903:29130-29410 + GCCACCGGATCGTTCCTCAAGCGCAATGTCGGCGTGCCCGAGGGCTACAGGTTGGTAT-GGTG--------G----ATCTATGGAT------CT-C-CG-GGGGTTATCA----CCCGA-----TCC-----G-----------------------------------AA---------------------CCGATTCGATCTCT--G----------TTATC------------------------TGG--GGCC----------C---------------CCGCTTGCGGTAAACAAA----TTTAACTGCAATC-GATGCACTGAG---------------------GC-AGGGTCAACAA--TCG----CTGATAAGCCCCCCA----------------------------------------TTTCCAT--TCCCCATCC--------------------CCCC------GTCGGAATA-----ACATTGCTAAAGTCATCAAA------------A----------TCAAATCGTGGGGTC--TGTAATTCAAGCCGG------------------------------------------------------------A
droEle1 scf7180000491023:347351-347684 - GCCACCGGATCGTTCCTTAAGCGAAATGTCGGAGTGCCCGAGGGATACAGGTTGGTAT-GGCA--ACAGTTGGTGGA----CATTT------CTAA-CT-GGGGTTATCA----TCCAAAACGATCCGATCCGATCCGAAA-----CGAGCCGATTCGATTCGATTCGAT---------------------TCGATTCGATCTCT--C----------TTATC------------------------TGA--AC----------------------------ACACTTGCGGTAAACAAA----TTTAACTGCAATCCGATGCACTGAG---------------------GC-AGGGTCAACAT--TCG----CTGATAAGCCCAGA---TAG---------AGAT--------------A--T-------------TCTCCTCACCCCACCCCCCCAAACCCCTCCC-C------CTCGCAA---CAAAACATTGCTAGAGTCATC-----------------------------------GAAATC--TGTAACACAAGCCGG-------------------------------------------------------------
droRho1 scf7180000779985:11825-12127 + GCCACCGGATCGTTCCTCAAGCGGAATGTTGGAGTGCCCGAGGGCTACAGGTTGGTAT-GGTA--ACAGTGGGTGTA----CATCT------GTGG-CT-GGGGTTATCA----CCCAA-----TCC-----GAAACGAAA----------------------------------------------CGAACCGATTCGATCTCT--C----------TTATC------------------------TGG--GC----------------------------CCGCTTGCGGTAAACAAA----TTTAACTGCAATCCGATGCACTGAG---------------------GC-CGGGTCAACAA--TCG----CTGATAAGCCCAGA---TAG---------ATGT--------------A--T-------------TCCCCATACC--------------CCTTACC-C------CTCGAAA---CAAAACGTTGCTAAAGTCATCAAA------------A----------TCGCATTGTGGAATC--TGTAATTCGAGCCGG-------------------------------------------------------------
droFic1 scf7180000454050:563661-563965 - GCCACCGGATCGTTCCTCAAGCGGAACGTCGGAGTGCCCGAGGGCTACAGGTTGGTAT-GGCA--ACAGTGGGTGTG----CGTCT------CTAGCCG-GGGGTTATCA----CCCGA-----TCC-----G-----------------------------------AT----------CCAAAAGCGAACCGGTTCGATCTCT--G----------TTATC------------------------TGG--GA----------------------------CCGCTTGCGGTAAACAAA----TTTAACTGCAATC-GATGCACTGCG---------------------GC-AGGGTCAACAC--TCG----CTGATAAGCCCCCA---TAG---------CGAT--------------A--TACCTC-----------CGATTC--------------------CC-C------CTTGGAATAGCAGCACATTGCTAAGCTCAGCAAA----------AAA----------TAGAATCGTGGGGTC--GGAAATTCGAGCCGG-------------------------------------------------------------
droKik1 scf7180000302621:50047-50302 + GCCACCGGTTCGTTCCTCAAGCGCAATGTTGGTGTTCCCGAGGGCTACAGGTTGGTAT-AACTACATAGT--------------AT------ATACTGG-GGGGTTATCA----ACCAA-----TCC-----G-----------------------------------TT----------CCA----------TATGCGATCTCC--C----------TTATC------------------------TCG--AGCCAGAGA---------------------TGTGTTGCGGTAAACAAA----TTTAACTGCAATC-GATGCACTGCC---------------------TCCGAGGTCAACGA--TCCC--AGCGATAAGGCAT-TAGAT-----------------TC-T-TGA-----TC----------------CCAA-AAA--------------------ACC------CACGGAATA-----ACATTGCTAAAGTCATT--------------------------------------------------------GG-------------------------------------------------------------
droAna3 scaffold_13117:3583030-3583245 - GCCACCGGATCTTTCCTCAAACGGAACGTGGGCGTACCGGAGGGCTATAGGTTGGTAA-CTGA--ACCGA--------------TT------CCACCGG-GGGGTTATCTCA--CCTGA-----TCC------------------------------------------------------------------G-TGCGATCTCA--GATCTCAGGTCTTATC------------------------TCTCAGG-CCGAGAACTGTC---------------CCAGTTGCGGTAAACAAA----TTTAACTGCAATC-GATGCGATGCATT--------------CGACGGC-GAGGTCAACGAC-TCA----CTGATAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396499:20527-20742 - GCCACCGGATCTTTCCTAAAACGGAACGTGGGCGTGCCGGAGGGCTATAGGTTGGTAA-CCGA--ACCGA--------------TT------CC-A-CG-GGGGTTATCG----CC--A-----TCT-----G-----------------------------------AT---------------------CTTTTCAGAA---------------------T------------------------TGT--GC------------C---------------CGATTTGTGGTAAACAAA----TTTAAGTGCAATC-GATGCATCGAG---------------------TC-GAGGTCAACGA--CTGGCGACTGATAAGGCCCCTCCACCG---------GACTC-------G----------------------------------------------------------------------------------------------------------------------------------ATC--CG-AACCCAAATCC------------------------------------------------------------AA
dp5 XL_group1e:6596182-6596498 + GCCACTGGATCGTTCCTCAAGCGCAATGTCGGCGTGCCGGAGGGCTACAGGTTAGTGG------------------------------CATTCATG-CC-GAGGTTATCG----GCGCCTTCGATCCCATCC-----CGCCGCATATCAACC------------------------------------------------------------------------------------------------------------------AACGTTGACGTTTCACGCTGCTGCGGTAAACAAA----TTTAACTGCAATC-GATGCACTGCACTGCCCTGCACCGCACTGCTCGC-GAGGTCAACGA--CAGT--TCCGATAAGCATC--------------------------------------TCCCAT-----------CCATCC--------------------CCT----CATCT-CGAATA-----ACATTGCAAAAGTCATCGGAGGCAAGCCGAAAACCATTCCGTA--------TGCAATC--CGT------------TTTTATGTTTCGTCAG-------------------------------------------AG
droPer2 scaffold_21:1608471-1608832 + GCCACTGGATCGTTCCTCAAGCGCAATGTCGGCGTGCCGGAGGGCTACAGGTTAGTGG------------------------------CATTCATG-CC-GAGGTTATCG----GCGCCTTCGATCCCATCC-----CGCCGCATATCAACC------------------------------------------------------------------------------------------------------------------AACGTTGACGTTTCACGCTGCTGCGGTAAACAAA----TTTAACTGCAATC-GATGCACTGCACTGCCCTGCACTGCACTGCTCGC-GAGGTCAACGA--CAGT--TCCGATAAGCATC--------------------------------------TCCCAT-----------CCATCC--------------------CCT----CATCT-CGAATA-----ACATTGCAAAAGTCATCGGAGGCAAGCCGAAAACC------TACGGAATGGTGCAATC--CGT------------TTTTATGTTTCGTCAGAAAATCTCGATTTCAAATTTAATGCAAAGAAAAAGGCCTTACAAA
droWil2 scf2_1100000004590:2038578-2038795 + GCCACTGGTTCATTCCTTAAACGTAATGCCGGCGTACCGGAGGGCTACAGGTTAGTGG------------------------------CA--TCTG-TC-AGGGTTATCACACATCCACA-----GT-----G-----------------------------------AT---------------------CGACAGCGATCGCCTCG----------TTATCAACCGCCAAGCAACCGCAGTGCAGTGG--CT----------------------------TTTGTTGTGGTAAACAAAATTTTTTAACTGCAATT-GATGCACTGGT---------------------CG-GAGGTCGATCA--GCG----GTAGCGGTTGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT-------------------------------------------------------------
droVir3 scaffold_12928:2336484-2336541 - GCAACTGGCTCCTTTCTCAAGCGCAATGTGGGCGTGCCCGAGGGCTACAGGTCAGTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6473:14107425-14107482 - GCAACCGGCTCCTTTCTCAAGCGCAATGTGGGCGTGCCCGAGGGCTACAGGTCAGTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15203:5030780-5030863 + -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGGTAAACAAA----TTCATTTA----C-GATGCACTGCA---------------------TC-GAGGTT-GCAA--CCG----CTGATAAGCCGCGCAGTGAG---------------------GC-----AC------------------------------------------------------------------GACAATAATA-----------------------------------------------------------------------------------------------------------------------------AA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GCCACCGGTTCGTTTCTCAAGCGCAATGTCGGAGTGCCCGAGGGCTACAGGTTGGTAATGGTA-AACAGC--------------CACTTG--CTGG-CT-GGGGTTATCA----CCCCA-----TTC-----G-----------------------------------AT---------------------TCGTTGCGATCTCTGTG----------TTATC------------------------TGT--GT----------------------------CCGCTTGCGGTAAACAAA----TTCAAATGCAATC-GATGCACTGCA---------------------GC-AGGGTCAACAA--TCG----CTGATAAGCGCTGTACAC-----------------TCGTTGGT-----GC----------------CCTC-------------------------------------------------------AAAGCCATC-----------------------------------GAAATC--TGTAATTCAAGTCA------------------------------------------------------------AGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................ATGTCGGAGTGCCCGAGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200200000000000000
................TCAAGCGCAATGTCGGAGTGCCCGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00200000001010000000
.................CAAGCGCAATGTCGGAGTGCCCGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200200000000000000
...................AGCGCAATGTCGGAGTGCCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00201000000000100000
.........TCGTTTCTCAAGCGCAATGTCGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200000020000000000
...........................GTCGGAGTGCCCGAGGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
.......................CAATGTCGGAGTGCCCGAGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
........TTCGTTTCTCAAGCGCAATGTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000100000000000
......................GCAATGTCGGAGTGCCCGAGGGCTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000001000
...........................................GCTACAGGTTGGTAATGGTA-AA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000100000
........................AATGTCGGAGTGCCCGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000001000000000
.....................CGCAATGTCGGAGTGCCCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
........................AATGTCGGAGTGCCCGAGGGCTAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000000000
...............................GAGTGCCCGAGGGCTACAGGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000100000
.............................................................................................................A----CCCCA-----TTC-----G-----------------------------------AT---------------------TCGTTGCGATC........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000000000
.............TTCTCAAGCGCAATGTCGGAGTGCCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
.....................CGCAATGTCGGAGTGCCCGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
...............CTCAAGCGCAATGTCGGAGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
droSec2
GCCACCGGTTCGTTTCTCAAGCGCAATGTCGGAGTGCCCGAGGGCTACAGGTTGGTAATGGTA-AACAGC--------------CACTTG--CTCG-CT-GGGGTTATCA----CCCCA-----TTC-----G-----------------------------------AT---------------------TCGTTGCGATCTCTGTG----------TTATC------------------------TGT--GC----------------------------CCACTTGCGGTAAACAAAA---TTCAAATGCAATC-GATGCACTGCA---------------------GC-AGGGTCAACAA--TCG----CTGATAAGCGCTGTACAC-----------------TCG--GGT-----GC----------------CCTC-------------------------------------------------------AAAGCCATC-----------------------------------GAAATC--TGTAATTCAAGTCA------------------------------------------------------------AGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................CAATGTCGGAGTGCCCGAGGGCTACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
........................AATGTCGGAGTGCCCGAGGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
...............CTCAAGCGCAATGTCGGAGTGCCCGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
................TCAAGCGCAATGTCGGAGTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
...............CTCAAGCGCAATGTCGGAGTGCCCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
..................AAGCGCAATGTCGGAGTGCCCGAGGGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010010
...................AGCGCAATGTCGGAGTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.............................CGGAGTGCCCGAGGGCTACAGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001
...................AGCGCAATGTCGGAGTGCCCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001
.......................CAATGTCGGAGTGCCCGAGGGCTACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000
......................GCAATGTCGGAGTGCCCGAGGGCTACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010001
dm3
GCCACCGGTTCGTTCCTCAAGCGCAATGTCGGCGTGCCCGAGGGCTACAGGTTGGTAA-------ACAGC--------------CAATGG--CTGG-CTGTGGGTTATCA----CCCCA-----TTC-----G-----------------------------------AT---------------------TTGTTGCGATCTGTGTG----------TTATC------------------------TGT--GT----------------------------CCGCTTGCGGTAAACAAA----TTCAAATGCAATC-GATGCACTGCA---------------------GC-AGGGTCAACAA--TCG----CTGATAAGATTGAT----------------------CGTTTGT-----GA----------------ACTC-------------------------------------------------------AAAGCCCAC-----------------------------------GAAATC--TGTAATTCAAGTCA------------------------------------------------------------AGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........TCGTTCCTCAAGCGCAATGTCGGCGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2717.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TTCGTTCCTCAAGCGCAATGTCGGCGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................ATGTCGGCGTGCCCGAGGGCTACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000100000000000000000000000000000
........................AATGTCGGCGTGCCCGAGGGCTAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AATGTCGGCGTGCCCGAGGGCTACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TTCCTCAAGCGCAATGTCGGCGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TTCGTTCCTCAAGCGCAATGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GTTCCTCAAGCGCAATGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000000000000000000000000000000000000
............................................................................................................CA----CCCCA-----TTC-----G-----------------------------------AT---------------------TTGTTGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................2141.5060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....CGGTTCGTTCCTCAAGCGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GTTCGTTCCTCAAGCGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................CGCAATGTCGGCGTGCCCGAGGGCTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TGT-----GA----------------ACTC-------------------------------------------------------AAAGCCCAC-----------------------------------GAA.................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CAAGCGCAATGTCGGCGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
.....................CGCAATGTCGGCGTGCCCGAGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TCGTTCCTCAAGCGCAATGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................ATGTCGGCGTGCCCGAGGGCTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...................AGCGCAATGTCGGCGTGCCCGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..............CCTCAAGCGCAATGTCGGCGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
.......GTTCGTTCCTCAAGCGCAATGTCGGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............CTCAAGCGCAATGTCGGCGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................AGCGCAATGTCGGCGTGCCCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................GCAATGTCGGCGTGCCCGAGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CACCGGTTCGTTCCTCAAGCGCAATGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................CGGCGTGCCCGAGGGCTACAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.........................................................................................G--CTGG-CTGTGGGTTATCA----CCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........TCGTTCCTCAAGCGCAATGTCGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TGTCGGCGTGCCCGAGGGCTAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
........................AATGTCGGCGTGCCCGAGGGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TCCTCAAGCGCAATGTCGGCGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TTCGTTCCTCAAGCGCAATGTCGGCGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........TCGTTCCTCAAGCGCAATGTCGGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................CAATGTCGGCGTGCCCGAGGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..CACCGGTTCGTTCCTCAAGCGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................CTGCA---------------------GC-AGGGTCAACAA--....................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
.........................ATGTCGGCGTGCCCGAGGGCTACAGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
........TTCGTTCCTCAAGCGCAATGTCGGATC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TCGTTCCTCAAGCGCAATGTCGGCGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................ATAAGATTGAT----------------------CGTTTGT-----GA----------------AA.........................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TTCGTTCCTCAAGCGCAATGTCGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............CTCAAGCGCAATGTCGGCGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TCCTCAAGCGCAATGTCGGCGTGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..........................TGTCGGCGTGCCCGAGGGCTACAGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................TGG-CTGTGGGTTATCA----CCCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................ATGTCGGCGTGCCCGAGGGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.............TCCTCAAGCGCAATGTCGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
........................AATGTCGGCGTGCCCGAGGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................AA--TCG----CTGATAAGATTGA................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................CA----CCCCA-----TTC-----G-----------------------------------AT---------------------TTGTTGCGATC........................................................................................................................................................................................................................................................................................................................................................................................................................................2440.5020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................A-----TTC-----G-----------------------------------AT---------------------TTGTTGCGATCTGTGTG----------T.......................................................................................................................................................................................................................................................................................................................................................................................................................2540.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................TGTTGCGATCTGTGTG----------TTATC------------------------TG.........................................................................................................................................................................................................................................................................................................................................................................................2340.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GCCACCGGATCGTTCCTCAAGCGCAATGTCGGCGTGCCCGAGGGCTACAGGTTGGTAT-GCTA--ACAGC--------------CT------CTGG-CT-GGGGTTATCA----CCCCA-----TTC-----G-----------------------------------AT---------------------GCGATGCGATCTCG--G----------TTATC------------------------TGA--GT----------------------------CCGCCTGCGGTAAACAAA----TTTCAGTGCAATC-GATGCACTGCG---------------------GC-AGGGTCAACAA--TCG----CTGATAAGCCCTGGAT---GCGTCTATATGTACATACATATGT-----AC----------------GCCC-------------------------------------------------------AAAGGCATC-----------------------------------AAAATC--TGTAATTCAAGTCGTATCTATG---CGTTA--------------------------------------------AGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................CAAGCGCAATGTCGGCGTGCCCGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
...........GTTCCTCAAGCGCAATGTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
..........CGTTCCTCAAGCGCAATGTCGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001000
droYak3
GCCACCGGATCGTTCCTCAAGCGCAATGTCGGAGTGACGGAGGGCTACAGGTTGGTAT-GATA--ACAGC--------------CT------CTCG-TT-GGGGTTATCA----CCCCA-----TTCCATTC-----CATTCGA----------TTCGATTCGATTTGAT---------------------TCGTTGCTATCTCG--G----------TTATC------------------------TGG--GTC-----------C---------------CCGCTTGCGGTAAACAAA----TTAAACTGCAATC-GATGCACTGAG---------------------AC-AGGGTCAACAA--ACG----CTGATAAGCCCTGT---T-------------------GTATGC-----AC----------------ACTC-AAA--------------------TCCAATCAAAT-CAA----------------------ATC-----------------------------------AAAATG--TGTAATTTAAGTACA-------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................TCAAGCGCAATGTCGGAGTGACGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000
..................AAGCGCAATGTCGGAGTGACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
...........GTTCCTCAAGCGCAATGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
..................AAGCGCAATGTCGGAGTGACGGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
...........GTTCCTCAAGCGCAATGTCGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.......................................................................................................................................................................................................................................................................................................................GCAATC-GATGCACTGAG---------------------AC-AG...............................................................................................................................................................................................................................................................................2111.00101000000000
droEug1
GCCACCGGATCGTTCCTTAAGCGCAATGACGGAGTGCCCGAGGGCTACAGGTTGGTAT------------------------------TA--TTGG-CG-GAGGTTATCA----ATCGA-----TAC-----G-----------------------------------TT----------CGAAAACCGAACCGATTCGATCTCT--C----------TTATC------------------------TGG--GGC-----------A---------------ACGTTTGCGGTAAACAAT--TTTTTAACTGCAATC-GATGCACTGAG---------------------GC-AGGGTCAACAACATCG----CTGATAAGCTCAGAATATAG---------GTATA-------GAATATA--T-----T---ATGAT-------------------------------------------AATA-----ACATTGCTAAAGTCATGAAA------------A----------TCAAAATGTGAGGTCTGTGTAACTCAACCCAG-------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GCCACCGGCTCGTTCCTCAAGCGCAATGTCGGCGTGCCCGAGGGCTACAGGTTGGTAT-AGCA--ACAGTGGGAGTACCTACGTCT------CCGC-CC-GGGGTTATCA----CTCCA-----TCCCATCC-----CATCGCA----------ACCGATCCGATCTGATCCGATCCATTCGAAAA-CGAGCCGACTCGATCTCT--G----------TTATC------------------------TGG--GC----------------------------GCGGTTGCGGTAAACAAG----TTAAACTGCAATC-GATGCACTGCG---------------------GC-AGGGTCAACAC--TCG----CTGATAAGCCCAGA---TAG---------CTAT--------GTACA---------TTTCCATGTT-------------------------------------------CAC------ACACGGCTAAAGTCATCAAA------------A----------TCGAATCGCGGGGTC--CGTAATTCGAGCCGG-------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GCCACCGGATCGTTCCTCAAGCGCAATGTCGGCGTGCCCGAGGGCTACAGGTTGGTAT-GGTG--------G----ATCTATGGAT------CT-C-CG-GGGGTTATCA----CCCGA-----TCC-----G-----------------------------------AA---------------------CCGATTCGATCTCT--G----------TTATC------------------------TGG--GGCC----------C---------------CCGCTTGCGGTAAACAAA----TTTAACTGCAATC-GATGCACTGAG---------------------GC-AGGGTCAACAA--TCG----CTGATAAGCCCCCCA----------------------------------------TTTCCAT--TCCCCATCC--------------------CCCC------GTCGGAATA-----ACATTGCTAAAGTCATCAAA------------A----------TCAAATCGTGGGGTC--TGTAATTCAAGCCGG------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droEle1
GCCACCGGATCGTTCCTTAAGCGAAATGTCGGAGTGCCCGAGGGATACAGGTTGGTAT-GGCA--ACAGTTGGTGGA----CATTT------CTAA-CT-GGGGTTATCA----TCCAAAACGATCCGATCCGATCCGAAA-----CGAGCCGATTCGATTCGATTCGAT---------------------TCGATTCGATCTCT--C----------TTATC------------------------TGA--AC----------------------------ACACTTGCGGTAAACAAA----TTTAACTGCAATCCGATGCACTGAG---------------------GC-AGGGTCAACAT--TCG----CTGATAAGCCCAGA---TAG---------AGAT--------------A--T-------------TCTCCTCACCCCACCCCCCCAAACCCCTCCC-C------CTCGCAA---CAAAACATTGCTAGAGTCATC-----------------------------------GAAATC--TGTAACACAAGCCGG-------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GCCACCGGATCGTTCCTCAAGCGGAATGTTGGAGTGCCCGAGGGCTACAGGTTGGTAT-GGTA--ACAGTGGGTGTA----CATCT------GTGG-CT-GGGGTTATCA----CCCAA-----TCC-----GAAACGAAA----------------------------------------------CGAACCGATTCGATCTCT--C----------TTATC------------------------TGG--GC----------------------------CCGCTTGCGGTAAACAAA----TTTAACTGCAATCCGATGCACTGAG---------------------GC-CGGGTCAACAA--TCG----CTGATAAGCCCAGA---TAG---------ATGT--------------A--T-------------TCCCCATACC--------------CCTTACC-C------CTCGAAA---CAAAACGTTGCTAAAGTCATCAAA------------A----------TCGCATTGTGGAATC--TGTAATTCGAGCCGG-------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GCCACCGGATCGTTCCTCAAGCGGAACGTCGGAGTGCCCGAGGGCTACAGGTTGGTAT-GGCA--ACAGTGGGTGTG----CGTCT------CTAGCCG-GGGGTTATCA----CCCGA-----TCC-----G-----------------------------------AT----------CCAAAAGCGAACCGGTTCGATCTCT--G----------TTATC------------------------TGG--GA----------------------------CCGCTTGCGGTAAACAAA----TTTAACTGCAATC-GATGCACTGCG---------------------GC-AGGGTCAACAC--TCG----CTGATAAGCCCCCA---TAG---------CGAT--------------A--TACCTC-----------CGATTC--------------------CC-C------CTTGGAATAGCAGCACATTGCTAAGCTCAGCAAA----------AAA----------TAGAATCGTGGGGTC--GGAAATTCGAGCCGG-------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GCCACCGGTTCGTTCCTCAAGCGCAATGTTGGTGTTCCCGAGGGCTACAGGTTGGTAT-AACTACATAGT--------------AT------ATACTGG-GGGGTTATCA----ACCAA-----TCC-----G-----------------------------------TT----------CCA----------TATGCGATCTCC--C----------TTATC------------------------TCG--AGCCAGAGA---------------------TGTGTTGCGGTAAACAAA----TTTAACTGCAATC-GATGCACTGCC---------------------TCCGAGGTCAACGA--TCCC--AGCGATAAGGCAT-TAGAT-----------------TC-T-TGA-----TC----------------CCAA-AAA--------------------ACC------CACGGAATA-----ACATTGCTAAAGTCATT--------------------------------------------------------GG-------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
GCCACCGGATCTTTCCTCAAACGGAACGTGGGCGTACCGGAGGGCTATAGGTTGGTAA-CTGA--ACCGA--------------TT------CCACCGG-GGGGTTATCTCA--CCTGA-----TCC------------------------------------------------------------------G-TGCGATCTCA--GATCTCAGGTCTTATC------------------------TCTCAGG-CCGAGAACTGTC---------------CCAGTTGCGGTAAACAAA----TTTAACTGCAATC-GATGCGATGCATT--------------CGACGGC-GAGGTCAACGAC-TCA----CTGATAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........CTTTCCTCAAACGGAACGTGGGCGTACCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000010
.......................GAACGTGGGCGTACCGGAGGGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2321.002000002
.................CAAACGGAACGTGGGCGTACC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...........................GTGGGCGTACCGGAGGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.501010000
..........................CGTGGGCGTACCGGAGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.501000001
.......................GAACGTGGGCGTACCGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.501000010
........................AACGTGGGCGTACCGGAGGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.501100000
......................GGAACGTGGGCGTACCGGAGGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.501100000
.........................ACGTGGGCGTACCGGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.501100000
droBip1
GCCACCGGATCTTTCCTAAAACGGAACGTGGGCGTGCCGGAGGGCTATAGGTTGGTAA-CCGA--ACCGA--------------TT------CC-A-CG-GGGGTTATCG----CC--A-----TCT-----G-----------------------------------AT---------------------CTTTTCAGAA---------------------T------------------------TGT--GC------------C---------------CGATTTGTGGTAAACAAA----TTTAAGTGCAATC-GATGCATCGAG---------------------TC-GAGGTCAACGA--CTGGCGACTGATAAGGCCCCTCCACCG---------GACTC-------G----------------------------------------------------------------------------------------------------------------------------------ATC--CG-AACCCAAATCC------------------------------------------------------------AASizeHit CountTotal NormTotal
No Reads
dp5
GCCACTGGATCGTTCCTCAAGCGCAATGTCGGCGTGCCGGAGGGCTACAGGTTAGTGG------------------------------CATTCATG-CC-GAGGTTATCG----GCGCCTTCGATCCCATCC-----CGCCGCATATCAACC------------------------------------------------------------------------------------------------------------------AACGTTGACGTTTCACGCTGCTGCGGTAAACAAA----TTTAACTGCAATC-GATGCACTGCACTGCCCTGCACCGCACTGCTCGC-GAGGTCAACGA--CAGT--TCCGATAAGCATC--------------------------------------TCCCAT-----------CCATCC--------------------CCT----CATCT-CGAATA-----ACATTGCAAAAGTCATCGGAGGCAAGCCGAAAACCATTCCGTA--------TGCAATC--CGT------------TTTTATGTTTCGTCAG-------------------------------------------AGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................G------------------------------CATTCATG-CC-GAGGTTATCG----GCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
...............................GCGTGCCGGAGGGCTACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.......GATCGTTCCTCAAGCGCAATGTCGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
...........................................................................................................................................................................................................................................................................................................................TC-GATGCACTGCACTGCCCTG.................................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
GCCACTGGATCGTTCCTCAAGCGCAATGTCGGCGTGCCGGAGGGCTACAGGTTAGTGG------------------------------CATTCATG-CC-GAGGTTATCG----GCGCCTTCGATCCCATCC-----CGCCGCATATCAACC------------------------------------------------------------------------------------------------------------------AACGTTGACGTTTCACGCTGCTGCGGTAAACAAA----TTTAACTGCAATC-GATGCACTGCACTGCCCTGCACTGCACTGCTCGC-GAGGTCAACGA--CAGT--TCCGATAAGCATC--------------------------------------TCCCAT-----------CCATCC--------------------CCT----CATCT-CGAATA-----ACATTGCAAAAGTCATCGGAGGCAAGCCGAAAACC------TACGGAATGGTGCAATC--CGT------------TTTTATGTTTCGTCAGAAAATCTCGATTTCAAATTTAATGCAAAGAAAAAGGCCTTACAAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................AATGTCGGCGTGCCGGAGGGCTACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
......................GCAATGTCGGCGTGCCGGAGGGCTAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
........................AATGTCGGCGTGCCGGAGGGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
..........................TGTCGGCGTGCCGGAGGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
...........................GTCGGCGTGCCGGAGGGCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
droWil2
GCCACTGGTTCATTCCTTAAACGTAATGCCGGCGTACCGGAGGGCTACAGGTTAGTGG------------------------------CA--TCTG-TC-AGGGTTATCACACATCCACA-----GT-----G-----------------------------------AT---------------------CGACAGCGATCGCCTCG----------TTATCAACCGCCAAGCAACCGCAGTGCAGTGG--CT----------------------------TTTGTTGTGGTAAACAAAATTTTTTAACTGCAATT-GATGCACTGGT---------------------CG-GAGGTCGATCA--GCG----GTAGCGGTTGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT-------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................AACGTAATGCCGGCGTACCGGAGGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100001
.........TCATTCCTTAAACGTAATGCCGGCGTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
...................................................................................................................CCACA-----GT-----G-----------------------------------AT---------------------CGACAGCGATC........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
....CTGGTTCATTCCTTAAACGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
.........................ATGCCGGCGTACCGGAGGGCTACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100001
droVir3
GCAACTGGCTCCTTTCTCAAGCGCAATGTGGGCGTGCCCGAGGGCTACAGGTCAGTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........CTCCTTTCTCAAGCGCAATGTGGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002000100000000000001000000000000000000000000000000000000000000000
............................TGGGCGTGCCCGAGGGCTACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002001000000000000000000100000000000000000000000000000000000000000
...............CTCAAGCGCAATGTGGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002000000000000000000000000000000000010100000000000000000000000000
..........................TGTGGGCGTGCCCGAGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000100000000000000000000000000000000000000000000000000000
....................GCGCAATGTGGGCGTGCCCGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000100000000000000000000000000
......................GCAATGTGGGCGTGCCCGAGGGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000100
..........CCTTTCTCAAGCGCAATGTGGGCGTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000100000000000000000000000000000000000000000000000000000000
........................AATGTGGGCGTGCCCGAGGGCTACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000001000000000000000000000000000000000000000000000
......................GCAATGTGGGCGTGCCCGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000100000000000000000000000000000000000000000
...........................GTGGGCGTGCCCGAGGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000100000000000000000000000000000000000000000000000000000
........................AATGTGGGCGTGCCCGAGGGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
.........................ATGTGGGCGTGCCCGAGGGCTAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000001000000000000000000000000000000000000000000000000
....................GCGCAATGTGGGCGTGCCCGAGGGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000001
droMoj3
GCAACCGGCTCCTTTCTCAAGCGCAATGTGGGCGTGCCCGAGGGCTACAGGTCAGTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................AATGTGGGCGTGCCCGAGGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
..............TCTCAAGCGCAATGTGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.........................ATGTGGGCGTGCCCGAGGGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100
......................GCAATGTGGGCGTGCCCGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.......................CAATGTGGGCGTGCCCGAGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100
.................CAAGCGCAATGTGGGCGTGCCCGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
droGri2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGGTAAACAAA----TTCATTTA----C-GATGCACTGCA---------------------TC-GAGGTT-GCAA--CCG----CTGATAAGCCGCGCAGTGAG---------------------GC-----AC------------------------------------------------------------------GACAATAATA-----------------------------------------------------------------------------------------------------------------------------AASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 04:52 PM