ID:

dsi_15224

Coordinate:

3l:15615561-15615710 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-30.8	-30.7	-30.6

Flybase annnotation

CDS [3l_15615711_15615792_-]; exon [3l_15615711_15615886_-]; intron [3l_15607881_15615710_-]

No Repeatable elements found

mature

star

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CCGCGACGACGAGCAACTGAACGTCTATCCCAGCTATCCCAATGACAAAGGTGAGAACAAAAAATGGGGGCAAAACTGGGGAAATCGCTGAAAACCCAGACCGCATACACATATACATATATATAGAGCTCCCTTCATGACTCATCGCCACTCGAAGGCGTCACAACAAAGACGAAAGGACACTTGTCCGCTGCCAAGAAGTTCCCCCCACTTACCAACCACCACCCACCATTACCCCCCAAAGAAGAGG ************************************************..............(((.(((....(((((..............)))))...........(((((....))))).......(((((.................)))))((((........))))...((((....))))))).)))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	M024 male body	M025 embryo	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries
...CGACGACGAGCAACTGAACGT..................................................................................................................................................................................................................................	21	0	1	2.00	2	2	0	0	0	0	0	0
............GCAACTGAACGTCTATCCC...........................................................................................................................................................................................................................	19	0	1	2.00	2	2	0	0	0	0	0	0
.CGCGACGACGAGCAACTGAAC....................................................................................................................................................................................................................................	21	0	1	2.00	2	0	0	2	0	0	0	0
.CGCGACGACGAGCAACTGAACGTCTATCC............................................................................................................................................................................................................................	29	0	1	1.00	1	0	1	0	0	0	0	0
.................TGAACGTCTATCCCAGCT.......................................................................................................................................................................................................................	18	0	1	1.00	1	0	0	1	0	0	0	0
.....ACGACGAGCAACTGAACGTC.................................................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0
...........AGCAACTGAACGTCTATCCC...........................................................................................................................................................................................................................	20	0	1	1.00	1	0	1	0	0	0	0	0
..............AACTGAACGTCTATCCCAGCT.......................................................................................................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0
...........................................................................................................................................................................................CCCCTGCCAAGACGTTCC.............................................	18	2	2	0.50	1	0	0	0	1	0	0	0
..............................................................................GGGAAATCGCTGAAA.............................................................................................................................................................	15	0	3	0.33	1	0	0	0	1	0	0	0
.............................................................................................................................................................................................................CCCGACTTACCAACC..............................	15	1	6	0.17	1	0	0	0	0	1	0	0
......................................................................................................................................................................................................................................ATTACCCCCCACAGA.....	15	1	9	0.11	1	0	0	0	1	0	0	0
...........................................................................CCGGGTAAATCGCTGAA..............................................................................................................................................................	17	2	13	0.08	1	0	0	0	0	0	1	0
.............................................................................GGGGATATAGCTCAAAACC..........................................................................................................................................................	19	3	15	0.07	1	0	0	0	0	0	0	1

Anti-sense strand reads

GGCGCTGCTGCTCGTTGACTTGCAGATAGGGTCGATAGGGTTACTGTTTCCACTCTTGTTTTTTACCCCCGTTTTGACCCCTTTAGCGACTTTTGGGTCTGGCGTATGTGTATATGTATATATATCTCGAGGGAAGTACTGAGTAGCGGTGAGCTTCCGCAGTGTTGTTTCTGCTTTCCTGTGAACAGGCGACGGTTCTTCAAGGGGGGTGAATGGTTGGTGGTGGGTGGTAATGGGGGGTTTCTTCTCC ************************************************..............(((.(((....(((((..............)))))...........(((((....))))).......(((((.................)))))((((........))))...((((....))))))).)))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	SRR553486 Makindu_3 day-old ovaries	SRR902009 testis	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs
..CGCTGCTGCTCGTTGACTTGC...................................................................................................................................................................................................................................	21	0	1	4.00	4	4	0	0	0	0	0	0
........TGCTCGTTGGCTTGCAGATAG.............................................................................................................................................................................................................................	21	1	1	1.00	1	0	0	0	1	0	0	0
.....................................GGGTTACTGTTTCCACTCTTG................................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................TCCGCAGTGTTGTTTCTGCTTT.........................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0
...GCTGCTGCTCGTTGACTTGCA..................................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	1	0	0	0	0
......................................................................................CGAGTTTTGGGTCTGGC...................................................................................................................................................	17	1	1	1.00	1	0	1	0	0	0	0	0
............................GGGTCGATAGGGTTACTGTT..........................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................ATGGTTGGTGGTGGG.......................	15	0	2	0.50	1	0	1	0	0	0	0	0
....................................................................................................................................................................................................................ATGGTTGTTGGTGGGTGTTCA.................	21	3	11	0.18	2	0	0	2	0	0	0	0
............................................................................................................................................................................................................TGGGGTCAATGGTTGGTG............................	18	2	7	0.14	1	0	0	0	0	0	1	0
.........................................................................................................ATGTGTATATGTATATAT...............................................................................................................................	18	0	9	0.11	1	1	0	0	0	0	0	0
........................................................TGTTTTTTTCCCCCGTTAT...............................................................................................................................................................................	19	2	12	0.08	1	0	0	0	0	0	0	1
............................................................................................................................................................................................................................TAGTGGGTGTTAAGGGGGGG..........	20	3	17	0.06	1	0	0	0	1	0	0	0
...ACTGCTGCTCGTTGA........................................................................................................................................................................................................................................	15	1	19	0.05	1	0	0	0	0	0	0	1
.................................................................................TTTAGCGGCTTCTGGGTCAG.....................................................................................................................................................	20	3	20	0.05	1	0	0	1	0	0	0	0

Generated: 04/23/2015 at 04:24 PM