ID:

dsi_15220

Coordinate:

3r:10118420-10118569 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

CDS [3r_10118570_10118683_-]; exon [3r_10118570_10118719_-]; intron [3r_10118129_10118569_-]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CTCTCGTCTGCGAGCAGGAGGCACGCGATGCCAACACCCGCGCCGAGAAGGTGAGTCAACCACCCACTTCCCTAACCACCCGGTGCACTGAACAAAAAAACGTTTACTTCAAAAAATAATTCACTGCTCAAAAGTACCAACACCCTGCTCAAAAACAAATGAATCTAGAGCTCCAAATTCTCTAATGAAAAATAAAAGAATCTTTTTATAGTTTTTGTGTAAACATTGTCATCTATTCATGTATAAATAT ************************************************((((((....((((.................))))...(((((........)))))............))))))((((....))))..........((((.................))))......(((......)))...........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	O002 Head	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR902009 testis
...............AGGAGGCACGCGATGCCA.........................................................................................................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0
...TCGTCTGCGAGCAGGAGGCACGCGA..............................................................................................................................................................................................................................	25	0	1	1.00	1	0	0	1	0	0	0
.......................................................................................................................................................................................................................TGTGAAAACATCGTCATCT................	19	2	2	0.50	1	0	0	0	1	0	0
................................................................................................................................................................GAATCTAGAGCTCCAATTG.......................................................................	19	2	2	0.50	1	1	0	0	0	0	0
.............................................................................ACCCGGTGAACTGAA..............................................................................................................................................................	15	1	5	0.40	2	0	0	0	0	2	0
.............................................................................................................................................................AAGGAATCTAGAGCTC.............................................................................	16	1	3	0.33	1	1	0	0	0	0	0
................................................................................................................................................................GAATCGAGAGCTCCAA..........................................................................	16	1	3	0.33	1	1	0	0	0	0	0
..............................................................................................................................................................AGGAATCGAGAGCTCCAA..........................................................................	18	2	8	0.25	2	0	0	0	1	1	0
.................................................................................................................................................................AATCGAGAGCTCCAAGT........................................................................	17	2	20	0.20	4	3	0	0	0	1	0
................................................................................................................................................................GAATCGAGAGCTCCAAG.........................................................................	17	2	20	0.20	4	1	0	0	2	1	0
.............................................................................................................................................................AAGGAATCGAGAGCTCCA...........................................................................	18	2	7	0.14	1	0	0	0	0	0	1
.............................................................................................................................................................AAGGAATCGAGAGCTCCAAG.........................................................................	20	3	8	0.13	1	0	0	0	1	0	0
.................................................................................................................................................................AATCGAGAGCTCCAA..........................................................................	15	1	20	0.10	2	1	0	0	1	0	0

Anti-sense strand reads

GAGAGCAGACGCTCGTCCTCCGTGCGCTACGGTTGTGGGCGCGGCTCTTCCACTCAGTTGGTGGGTGAAGGGATTGGTGGGCCACGTGACTTGTTTTTTTGCAAATGAAGTTTTTTATTAAGTGACGAGTTTTCATGGTTGTGGGACGAGTTTTTGTTTACTTAGATCTCGAGGTTTAAGAGATTACTTTTTATTTTCTTAGAAAAATATCAAAAACACATTTGTAACAGTAGATAAGTACATATTTATA ************************************************((((((....((((.................))))...(((((........)))))............))))))((((....))))..........((((.................))))......(((......)))...........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	GSM343915 embryo	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries
.......................................................................................................................................................................CTCGAGGTTTAAGAGCTTACTTTTTAT........................................................	27	1	1	1.00	1	0	0	1	0	0
.............................................................................................................................................................GTACTTAGATCTAGAGGTTTAA.......................................................................	22	2	1	1.00	1	0	1	0	0	0
............................................................................................................................................................TTCACTTAGATCTCGAGTTTAA........................................................................	22	3	1	1.00	1	1	0	0	0	0
..............................................................................................................................................................................................................................GGTAAGAGTAGATAAGGACAT.......	21	3	1	1.00	1	1	0	0	0	0
.............................................................................................TTTTTTTGCAAACCAAGTTTTGT......................................................................................................................................	23	3	4	0.25	1	0	0	0	1	0
...................CCGTGCGGTTCAGTTGTGGG...................................................................................................................................................................................................................	20	3	5	0.20	1	0	1	0	0	0
....................................................CTCAGATGGTGGGTG.......................................................................................................................................................................................	15	1	6	0.17	1	0	0	0	1	0
.............................................................................................................................................................................GTTTGAGAGGTTACTTTT...........................................................	18	2	13	0.15	2	0	0	0	2	0
.........................................................................................................................................................................CGAGGTTTAAGAGTTTA................................................................	17	1	8	0.13	1	0	0	0	0	1
..............................................................GGGTGAAGGGAATGG.............................................................................................................................................................................	15	1	14	0.07	1	0	0	0	0	1
............................................................................................ATTTTTTTGCAAACCAAGTTT.........................................................................................................................................	21	3	18	0.06	1	0	0	0	1	0
..............................................................................................................................................................................................TTATTTTCTGAGAAAAAA..........................................	18	2	20	0.05	1	0	1	0	0	0
............................ACGGTTGTGGCCGCTGCTCA..........................................................................................................................................................................................................	20	3	20	0.05	1	0	0	0	0	1
.............................................................................................TTTTTTTGCAAGTGAACGTTT........................................................................................................................................	21	3	20	0.05	1	0	0	0	1	0
..............................................................................................................................................GGGTCGAGTTTTTGT.............................................................................................	15	1	20	0.05	1	0	0	0	0	1

Generated: 04/24/2015 at 10:29 AM