dsi_15183

three_prime_UTR [x_15442695_15442788_-]; CDS [x_15442789_15442834_-]; exon [x_15442695_15442834_-]; intron [x_15442835_15443145_-]

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CGAGTATTTCATACCCCATTGAAGCCGAATCGTTTCTCATGGCCAAATTAGCGTTTTGCTCGGTGCGCGATAAGTATTGACAATTAAGTAGCGTTTGATAAGTAGCATTCTACCTAATCGGGCACTGGCCAAAATGATTGACACCTTCCATACTAAGGGCCCTTGAACTAATCATGGTTTTATTTCTGTTTCCCCAACAGCAACATGGAGATGATCAACGTGAATCCGCACACGCAGTACTCCTAGACCG ************************************************.(((((((.(((((((.((((.((.............((((.(((........)))...)))))).)))).))))))).))))))).......((((.......))))(((..(((.....))).))).......(((((.....)))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	M053 female body	SRR553487 NRT_0-2 hours eggs	M025 embryo	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries
........................CCGAATCGTTTCTCATGGCCA.............................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................AGATGATCAACGTGAATCCGCACACGCA..............	28	0	1	1.00	1	0	1	0	0	0	0	0
....................................................................................................................................................TATACTAAGGGCCCTTGAACT.................................................................................	21	1	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................CATGGAGATGATCAACGTGAATCCGCA....................	27	0	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................CTAAGTGCCCTTGAAC..................................................................................	16	1	2	0.50	1	0	0	1	0	0	0	0
...............................................................TTCGCGATAAGGATTGAC.........................................................................................................................................................................	18	2	2	0.50	1	0	0	0	1	0	0	0
........................................................................................................................................................CTAAGGGCCCTTGTA...................................................................................	15	1	3	0.33	1	0	0	0	0	1	0	0
.....................................................................................................................................................................................................CAGGAACATGGAGCTGATCCA................................	21	3	4	0.25	1	0	0	1	0	0	0	0
................................................................................................GATAAGTAGTATTCT...........................................................................................................................................	15	1	10	0.10	1	1	0	0	0	0	0	0
..............................................ATTAGGGTTTTGCGCGG...........................................................................................................................................................................................	17	2	13	0.08	1	0	0	1	0	0	0	0
..................................................................TGGATAAGTATTGAC.........................................................................................................................................................................	15	2	20	0.05	1	0	0	0	0	0	1	0
.........................................................................................................................................TTGACACCGTCCATGCTG...............................................................................................	18	3	20	0.05	1	0	0	0	0	0	0	1
.................................................................................................................................CAAAAGGATTGACACCA........................................................................................................	17	2	20	0.05	1	1	0	0	0	0	0	0

GCTCATAAAGTATGGGGTAACTTCGGCTTAGCAAAGAGTACCGGTTTAATCGCAAAACGAGCCACGCGCTATTCATAACTGTTAATTCATCGCAAACTATTCATCGTAAGATGGATTAGCCCGTGACCGGTTTTACTAACTGTGGAAGGTATGATTCCCGGGAACTTGATTAGTACCAAAATAAAGACAAAGGGGTTGTCGTTGTACCTCTACTAGTTGCACTTAGGCGTGTGCGTCATGAGGATCTGGC ************************************************.(((((((.(((((((.((((.((.............((((.(((........)))...)))))).)))).))))))).))))))).......((((.......))))(((..(((.....))).))).......(((((.....)))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	M053 female body	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs
........................GGCTTAGCAAAGAGTACCGGT.............................................................................................................................................................................................................	21	0	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................................GTACCTCTGCTGGTTGCACTTA.........................	22	2	1	1.00	1	1	0	0	0	0
................................................................................................................................................................................................GGGTTGTCGTTGTACCTCTGC.....................................	21	1	1	1.00	1	0	1	0	0	0
.....................TTCGGCTTAGCAAAGAGTACC................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
...................................................................................................................................................................ACTTGATTAGTACCAAAATAA..................................................................	21	0	1	1.00	1	0	1	0	0	0
.............................................................................................................................................................................................................ACCTCTTCTTGTTGCACTT..........................	19	2	5	0.20	1	0	0	0	1	0
...............................................................................................................................................GGAGGGCATGATTCCC...........................................................................................	16	2	6	0.17	1	0	0	0	0	1
......................TCGGCTTAACAAAGAGCA..................................................................................................................................................................................................................	18	2	6	0.17	1	0	0	0	1	0
.........................................................................................................................................AACTGTGGAAGGCAGGA................................................................................................	17	2	11	0.09	1	0	0	0	1	0
...........................................................................................................................................................................................................................CATTTAGGCTTGTGCG...............	16	2	20	0.05	1	0	0	1	0	0

Species	Coordinate	ID	Alignment
droSim2	x:15442785-15443034 -	dsi_15183	CG-AGTAT----------------------------------------------TT-------------CAT-ACCCCATTGAAG----C-CG-AA--TCGTTTCTCATGGC---CAAATTAG----CGTTTTGC----TCGGTGCGCGATAAGTAT---TGAC-AAT-------------------------------TA-AGTAGCGTTTGATAAGTAG-------CATTCTACCTAATCGGGCA--CTGGCCAA--------------------------AATGATTGACACCT-----TC---C----------------------------------------ATAC--TAAGGGCCCTTGAACTAATCATGGTT--------------TTATTT------C---TGT------------------------------TTCCCCAACAGCAACATGGAGATGATCAACGTGAATCCGCACACGCAGTACTCCTAGACCG
droSec2	scaffold_14028:493-741 +		CG-AGTAT----------------------------------------------TT-------------CAT-ACCCCATTGAAG----C-CG-AA--TCGTTTCTCATGGC---CAAATTAG----CGTTTTGC----TCGGTGCGCGATAAGTAT---TGAC-AAT-------------------------------TA-AGTAGCGTTTGATA-GTAG-------CATTCTATCTAATCGGGCA--CTGGCCAA--------------------------AATGATTGACACCT-----TC---T----------------------------------------ATAC--TAAGGGCCCTTGAACTAATCATGGTT--------------TTATTT------C---TGT------------------------------TTCCCCAACAGCAACATGGAGATGATCAACGTGAACCCGCACACTCAGTACTCCTAGACCG
dm3	chrX:16333270-16333518 -		CG-AGTAT----------------------------------------------TT-------------CAT-TCCCCATTGAAG----C-CG-AA--TCGTTTCTCATGGC---CAAATTAG----CGTTTTGC----TCGGTGCGCGATAAGTAT---TGAC-AAT-------------------------------TA-AGTAGCGTTTGATA-GTAG-------CGTTTTACCTAATCGGGCA--CTGGCCAA--------------------------AATGATTGACACCT-----CC---T----------------------------------------ATAC--TAAGGGCTCTTGAACTAATCATGGTT--------------TTATTT------C---TGT------------------------------TTACCCAACAGCAACATGGAGATGATCAACGTGAACCCGCACACGCAGTACTCCTAGACCG
droEre2	scaffold_4690:10764468-10764712 +		CG-AGTAT----------------------------------------------TT-------------CAT-ACCCCATTGAAG----C-CG-AA--TCGTTTCTCATGGC---CAAATTAA-----C-TTTGC----TCGGTGCGCGATAAGTAT---TGAC-AAT-------------------------------TA-AGTAGCGTTTGATA-GTAG-------CTTTATACCTTATCGGGCA--CTGGCCAA--------------------------AATGATTGACACCT-----C-C--------------------------------------------TAC--TAAGAACTGTTGAACTAATCTTGGTT--------------TTATTT------C---TGT------------------------------TTCCCCGGCAGCAACATGGAGATGATCAACGTGAATCCGCACACGCAGTACTCCTAGGCCG
droYak3	X:10452305-10452546 -		CG-AGTAT----------------------------------------------TT-------------CAT-ATCCCATTGAAG----C-CG-AA--TCGTTTCTCATGGC---CAAATTAG-----C-TTTGC----TCGGTGCGCGATAAGTAT---TGAC-AAT-------------------------------CA-AGTAGCGTTTGATA-GTAG-------CTTTATACCTTATCGGGCA--CTGACCAA--------------------------AATGATTGACACCT-----T------------------------------------------------C--GAAGGGCTCTTGAACTAATCATGGTT--------------TTATTT------C---TGG------------------------------TTTCCCCGCAGCAACATGGAGATGATCAACGTGAATCCGCACACGCAGTACTCCTAGACCG
droEug1	scf7180000409110:213967-214212 +		CG-AGTAT----------------------------------------------TT-------------CAT-ATCCCATTGATG----G-CG-CA--TCATTTCCCATGGT---CAAATTAG-----C-TTTGC----TCGGTGTGCGATAAGTAT--TTGAC-ATT-------------------------------TA-AGTAGCGATTGATA-GTAG-------CTTTACTCCTTATCGGGCA--CTGGCCAA--------------------------AATGATTGACAACT-----T-T--------------------------------------------ACC--AAAGGGCTCTTGAACTAATCAATGTT--------------TTATTT------C---TGT------------------------------TTCCCCAGCAGCAACATGGAGATGATCAACGTGAACCCGCACACGCAGTACTCCTAGACCG
droBia1	scf7180000302075:544789-545032 +		CG-GGAAT--------------------------------------------ACCT-------------CAT-AGCCCATTGAAG----C-AG-CA--TTCCCTCCCATGGC---CAATTTAG-----C-TTTGC----TCGGTGCGCGATAAGTAT--TTCAC-ATT-------------------------------TAAAGTAGCGATTGATG-GTAG-TGGTAGCCGTAGTCCTTATCGGGGG--AT---------------------------------GTGATTGACTG------------------------------------------------------TCT--TAAGGGCCCTCGAACTAATCAACGTT--------------TTATTT------C---TGT------------------------------TCCCCCAGCAGCAACATGGAGATGATCAATGTGAACCCGCACACGCAGTACTCCTAGGCCG
droTak1	scf7180000415351:97713-97967 -		CG-AGAAA----------------------------------------------TT-------------CAT-AGCCCATTGAAG----C-CG-CA--TTCCTTCTCATGGC---CAAATTAG-----C-TTTGC----CCGGTGCGCGATAAGTACGTTTGAC-ATT-------------------------------TA-AGTAGCGTTTGATA-GTAGCTAGCAGCTCTAGTCCTTATCGGGCA--CTGGCCAA--------------------------AATGATTGACAACG-----C-T--------------------------------------------TCC--CAAGGGCTCTTGAACTAATCAAAGTC--------------TTATTT------C---TGT------------------------------TCCCCCAGCAGCAACATGGAGATGATCAACGTGAACCCGCACACGCAGTACTCCTAGACCG
droEle1	scf7180000491023:1566132-1566393 +		CG-AGAAT----------------------------------------------ATCA----TATCAT-CAT-AACCCATTGAAG----T-CCCCA--TAATTAAGCATGGC---CAAAATAC-----C-TTTGC----TCGGTGCGCGATAAGTAT---TGAC-ATT-------------------------------TA-AGTAGCGTTTGATA-GTAG----AAGCTTGAATCCTTATCGGGCA--CTGGCCAA--------------------------ATTGATTGACAACT-----A----------------------------------------GCTGAATTT--TAGGGGCTCTTGAACTAATCAACGTT--------------TTATCT------C---TGT------------------------------TTCCCCAGCAGCAACATGGAGATGATCAACGTGAATCCGCACACGCAGTACTCCTAGACCG
droRho1	scf7180000779966:60735-60980 +		CG-GGAAT----------------------------------------------TT-------------CAT-AGCCCATTGAAG----C-CC-CC--TCAGTTCTCATGGC---AAAATTTG-----C-TTTGC----TCGGTGCGCGATAAGTAT---TGAC-ATT-------------------------------TA-AGTAGCGATTGATA-GTAG-------TTTGACTCCTTATCGGGCA--CTGGCCAA--------------------------AATGATTGACAACT-----TCT--------------------------------------------TTG--TAGGGGCTCTTGAACTAATCAAAGTT--------------TTATTT------C---TGT------------------------------TTCCCCAGTAGCAACATGGAGATGATCAACGTGAATCCGCACACGCAGTACTCCTAGACCG
droFic1	scf7180000454077:2352443-2352687 +		CG-AGAAT----------------------------------------------AT-------------CAT-AACCCATTGAAG----C-CG-CA--TTATTTATCATGGC---CAAATTTG-----C-TTTGC----TCGGTGCGCGATAAGTAT---TGAT-ATT-------------------------------TA-AGTAGCGATTGATA-GTGG-------CTTTACTCCTTATCGGGCA--CTGGCCAA--------------------------AATGATTGACAACC-----ATT--------------------------------------------TCC--TATGGGCTCTTGAACTAATCAAAGTT---------------TATTT------C---TGT------------------------------TTCCCCAGCAGCAACATGGAGATGATCAATGTGAACCCGCACACGCAGTACTCCTAGGCCG
droKik1	scf7180000302586:105105-105398 +		CA-GGAAGAAAAAGCCCAGAAGCCACCATCACCTAACCGAAGTCC----CACACC-CACTCCCACCAT-CAT-CAT------------------CA--TCATATCTCATGGC---CAAATAAA----GCTATTGC-----CGGTGCGCGATAAGTAT---TGAT-GAT--------------------------GCT--TA-AGTAG-----------------------TTGTGGCTTATCGGGCACACTGGCCAA-----------------------A--AATGATTGACAAGC-----ATT--------------------------------------------T-TTAAGAGGGCTCTTGAACTAATCGAATGTTTCCGTTTCTGTTTCTGTTT------C---TGT------------------------------TCCCCCAGCAGCAACATGGAGATGATCAACGTGAATCCCCACACGCAGTACTCTTAGGCCC
droAna3	scaffold_13335:1489291-1489557 -		CA---TAC----------------------------------------------TT-------------CATCCATCCATCAAAA----C--------------CTCATGG-----------------------G----GCGGTGCGCGATAAGTAT---TCAAAAATTAAAAACA-AGAAAAAAAGATCCAAAGTT--GA-AGTAGCGATTA-------G-------C----GAACTTATCGGGCA--CTGGCCAAAAAAAAAAAATAATAA-------T--AATGATTGACACCCGAAGCAATGTTGGCCAAAGTCTAATCTAAGGTACTTACTCC----------------------------------------TA--------------CTATTT------C---CGT------------------------------TTTCGCAGCAGCAACATGGAGATGATCAACGTGAACCCGCACACGCAGTACTCCTAGGCC-
droBip1	scf7180000395676:22758-22998 +		CA-TCCAC----------------------------------------------TT-------------CAT-CATCCATCAAAC----C------------TCCTCATGGC---------------------------CCGGTGCGCGATAAGTAT---TCAA-AATTGAAACCAAAGAAAAAA-------AACTTGAAG-TGTAGCGATTA----G---------------GAACTTATCGGGCACACTGGCCAACAG--------------------A--AATGATTGACACCCGC--CCATGTTGGGCAAAGTCTAA----------------------------------------------TCT----AAGGTA--------------CTCTTT------C---CGT------------------------------TTCCACAGCAGCAACATGGAGATGATCAACGTGAACCCGCACACGCAGTACTCCTAGGCC-
dp5	XL_group1e:3089759-3090003 +		AGGAGGAG------C---------------------------TCTTGTACATACC-CA----CACCATCCAT-AACCATTTGAAG----C-TT-CATAT-----------------------------C-TTTACCCTGGGAGTGCGCGATAAGTAT---C----AAG-------------------------------TA-ATAATCTTTCGACT-------------------------------------------------------------------ATTGATTGACACATGT--------------------------ACACACCCACTACTACTATTTGCTC-T--CTATTGCACTTGAACTAATCAAAGCC---------CG---TTAT-T------G---TGT--------------CC-------------ACTCCACAGCAGCAACATGGAGATGATCAACGTGAATCCACATACGCAGTACTCCTAGATGC
droPer2	scaffold_17:23816-24060 +		AGGAGGAG------C---------------------------TCTTGTACATACC-CA----CACCATCCAT-AACCATTTGAAG----C-TT-CATAT-----------------------------C-TTTACCCTGGGAGTGCGCGATAAGTAT---C----AAG-------------------------------TA-ATAATCTTTCGACT-------------------------------------------------------------------ATTGATTGACACATGT--------------------------ACACACCCACTACTACTATTTGCTC-T--CTATTGCACTTGAACTAATCAAAGCC---------CG---TTAT-T------G---TGT--------------CC-------------ACTCCACAGCAGCAACATGGAGATGATCAACGTGAATCCACATACGCAGTACTCCTAGATGC
droWil2	scf2_1100000004590:2479861-2480116 -		CA-TTA------------------------------------------------TG-------------CA-----------------------------------TACGAA---AAAATTTG-----A-ATCAA----AAAGTATGCGATAAGTAT---TGAA-TTG--TAAGATATGGC-------------A---------TTTCAATTCATT-GTGG-------TTT--------AT--GGC---CTGGCCCGAAAAAAACCTTT-TATCAGCGCCA--TAAGAA--------------AAGCTAA---------------------------------------TCT--CAAAG----TCAATCTAATCACATTT--CC-----------TTTTTCTCTTTCTTGTGTTTCTCCCGTTGTCTCC---------A---ACTTAACAGCAGCAACATGGAAATGATCAACGTGAATCCGCATACGCAGTATTCCTAGGC--
droVir3	scaffold_12970:2157635-2157871 +		CA-TGCCT----------------------------------------------CT-------------CAA-GTCCCATCAAATAAAACAAA-AA--ATGTCT-AAATGGCTGTCAAAGCAAACGAGC-T---G----TTGGTGCGTGATAAGTAT---AACC-ATA---------------------------T---TTCCG--T--------------------------CAGCTTATCAG-C------GCCAG-----------------------T--TATGATTGCAATCA----------------------------------------------------TTT--CAAAA----TATAACTAATCTATTTTTTTACTTTGTCTCGCC-CTT------C---TGG-----------------------------AATATATAGCAGCAACATGGAGATGATAAACGTTAATCCACATACGCAGTACTCCTAGA---
droMoj3	scaffold_6359:3372767-3373009 +		CA-AGTGC----------------------------------------------CT-------------CAA-GGTCCATCAAAG----C-AA-AA--ATATCT-AAATGGCTGTCGAATTTA----CTGAGCAT----TTGGTGCGCGATAAGTAT---TTCC-ATT-------------------------------TA--CCATC--------------------------GGCTTATCAG-C------GCCAA-----------------------TTAAATGATTATAAACT-----T-TG-C----------------------------------------ATTT--AAAAA----TATAACTAATCAACTATTTCT-----------TTCTT------C---TAT--------------ACACATACATTAACCTATATATAGCAGCAACATGGAGATGATCAGCGTCAATCCGCACACGCAGTACTCGTAAA---
droGri2	scaffold_14853:6845517-6845588 -		G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC--------------CTCTTT------C---TGG-----------------------------TACATACAGCAGCAACATGGAAATGATGAGCGTTAATCCACACACACAGTACTCCTAGA---

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CG-AGTAT----------------------------------------------TT-------------CAT-ACCCCATTGAAG----C-CG-AA--TCGTTTCTCATGGC---CAAATTAG----CGTTTTGC----TCGGTGCGCGATAAGTAT---TGAC-AAT-------------------------------TA-AGTAGCGTTTGATAAGTAG-------CATTCTACCTAATCGGGCA--CTGGCCAA--------------------------AATGATTGACACCT-----TC---C----------------------------------------ATAC--TAAGGGCCCTTGAACTAATCATGGTT--------------TTATTT------C---TGT------------------------------TTCCCCAACAGCAACATGGAGATGATCAACGTGAATCCGCACACGCAGTACTCCTAGACCG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.........................................................................................C-CG-AA--TCGTTTCTCATGGC---CA...................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGATCAACGTGAATCCGCACACGCA..............	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGAGATGATCAACGTGAATCCGCA....................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

CG-AGTAT----------------------------------------------TT-------------CAT-ACCCCATTGAAG----C-CG-AA--TCGTTTCTCATGGC---CAAATTAG----CGTTTTGC----TCGGTGCGCGATAAGTAT---TGAC-AAT-------------------------------TA-AGTAGCGTTTGATA-GTAG-------CATTCTATCTAATCGGGCA--CTGGCCAA--------------------------AATGATTGACACCT-----TC---T----------------------------------------ATAC--TAAGGGCCCTTGAACTAATCATGGTT--------------TTATTT------C---TGT------------------------------TTCCCCAACAGCAACATGGAGATGATCAACGTGAACCCGCACACTCAGTACTCCTAGACCG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACATGGAGATGATCAACGTG............................	24	2	1.00	2	0	0	2	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACGTGAACCCGCACACTCAGTAC..........	27	2	0.50	1	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAACGTGAACCCGCACACTC...............	23	2	0.50	1	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGTGAACCCGCACACTCAGT............	23	2	0.50	1	0	0	1	0
...........................................................................................................ATGGC---CAAATTAG----CGTTTTGC----.............................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGTGAACCCGCACACTCAGTA...........	24	2	0.50	1	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATGGAGATGATCAACG..............................	19	2	0.50	1	0	0	0	1
.....................................................................................................................AATTAG----CGTTTTGC----TCGGTGC......................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	1

dm3

CG-AGTAT----------------------------------------------TT-------------CAT-TCCCCATTGAAG----C-CG-AA--TCGTTTCTCATGGC---CAAATTAG----CGTTTTGC----TCGGTGCGCGATAAGTAT---TGAC-AAT-------------------------------TA-AGTAGCGTTTGATA-GTAG-------CGTTTTACCTAATCGGGCA--CTGGCCAA--------------------------AATGATTGACACCT-----CC---T----------------------------------------ATAC--TAAGGGCTCTTGAACTAATCATGGTT--------------TTATTT------C---TGT------------------------------TTACCCAACAGCAACATGGAGATGATCAACGTGAACCCGCACACGCAGTACTCCTAGACCG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACGTGAACCCGCACACGCAGT............	24	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................A-AGTAGCGTTTGATA-GTAG-------CG..................................................................................................................................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................GC---CAAATTAG----CGTTTTGC----TCG..........................................................................................................................................................................................................................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................A-GTAG-------CGTTTTACCTAATCGG....................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TA-AGTAGCGTTTGATA-GTAG-------C...................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................CT-----CC---T----------------------------------------ATAC--TAAGGGCTCTTG..........................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................TAG----CGTTTTGC----TCGGTGCGCG...................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TCGGTGCGCGATAAGTAT---TGA.....................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGAGATGATCAACGTGAACC........................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCACACGCAGTACTCCTAGA...	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................CACCT-----CC---T----------------------------------------ATAC--TAAGGGCTC.............................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................CTTGAACTAATCATGGTG--------------AG............................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

droEre2

CG-AGTAT----------------------------------------------TT-------------CAT-ACCCCATTGAAG----C-CG-AA--TCGTTTCTCATGGC---CAAATTAA-----C-TTTGC----TCGGTGCGCGATAAGTAT---TGAC-AAT-------------------------------TA-AGTAGCGTTTGATA-GTAG-------CTTTATACCTTATCGGGCA--CTGGCCAA--------------------------AATGATTGACACCT-----C-C--------------------------------------------TAC--TAAGAACTGTTGAACTAATCTTGGTT--------------TTATTT------C---TGT------------------------------TTCCCCGGCAGCAACATGGAGATGATCAACGTGAATCCGCACACGCAGTACTCCTAGGCCG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGATGATCAACGTGAATCC.......................	23	1	2.00	2	0	1	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACATGGAGATGATCAACGT.............................	23	1	2.00	2	1	0	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACATGGAGATGATCAACGT.............................	21	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGATCAACGTGAATCCGCACA..................	24	1	1.00	1	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAACGTGAATCCGCACACGCAGT............	26	1	1.00	1	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACGTGAATCCGCACACGCA..............	23	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACATGGAGATGATCAACGT.............................	24	1	1.00	1	0	1	0	0	0	0	0
...........................................................................CCCATTGAAG----C-CG-AA--TCGTTT................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0

droYak3

CG-AGTAT----------------------------------------------TT-------------CAT-ATCCCATTGAAG----C-CG-AA--TCGTTTCTCATGGC---CAAATTAG-----C-TTTGC----TCGGTGCGCGATAAGTAT---TGAC-AAT-------------------------------CA-AGTAGCGTTTGATA-GTAG-------CTTTATACCTTATCGGGCA--CTGACCAA--------------------------AATGATTGACACCT-----T------------------------------------------------C--GAAGGGCTCTTGAACTAATCATGGTT--------------TTATTT------C---TGG------------------------------TTTCCCCGCAGCAACATGGAGATGATCAACGTGAATCCGCACACGCAGTACTCCTAGACCG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCAACATGGAGATGATC..................................	21	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCCGCACACGCAGTACTC........	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGCACACGCAGTACTCCTA.....	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCAACATGGAGATGAT...................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACATGGAGATGATCAACGT.............................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGATGATCAACGTGAATCC.......................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGATGATCAACGTGAATCCGCAC...................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................ACCT-----T------------------------------------------------C--GAAGGGCTCTTGAACT......................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACATGGAGATGATCAAC...............................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................GTAG-------CTTTATACCTTATCGGG...................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATGGAGATGATCAACGTG............................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCAACGTGAATCCGCACACGCA..............	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGCACACGCAGTACTCCTAGAC..	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCGCACACGCAGTACTCCTA.....	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATGGAGATGATCAACGT.............................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCGCACACGCAGTACTCC.......	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................GGGCA--CTGACCAA--------------------------AATGAT.......................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEug1

CG-AGTAT----------------------------------------------TT-------------CAT-ATCCCATTGATG----G-CG-CA--TCATTTCCCATGGT---CAAATTAG-----C-TTTGC----TCGGTGTGCGATAAGTAT--TTGAC-ATT-------------------------------TA-AGTAGCGATTGATA-GTAG-------CTTTACTCCTTATCGGGCA--CTGGCCAA--------------------------AATGATTGACAACT-----T-T--------------------------------------------ACC--AAAGGGCTCTTGAACTAATCAATGTT--------------TTATTT------C---TGT------------------------------TTCCCCAGCAGCAACATGGAGATGATCAACGTGAACCCGCACACGCAGTACTCCTAGACCG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CG-GGAAT--------------------------------------------ACCT-------------CAT-AGCCCATTGAAG----C-AG-CA--TTCCCTCCCATGGC---CAATTTAG-----C-TTTGC----TCGGTGCGCGATAAGTAT--TTCAC-ATT-------------------------------TAAAGTAGCGATTGATG-GTAG-TGGTAGCCGTAGTCCTTATCGGGGG--AT---------------------------------GTGATTGACTG------------------------------------------------------TCT--TAAGGGCCCTCGAACTAATCAACGTT--------------TTATTT------C---TGT------------------------------TCCCCCAGCAGCAACATGGAGATGATCAATGTGAACCCGCACACGCAGTACTCCTAGGCCG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CG-AGAAA----------------------------------------------TT-------------CAT-AGCCCATTGAAG----C-CG-CA--TTCCTTCTCATGGC---CAAATTAG-----C-TTTGC----CCGGTGCGCGATAAGTACGTTTGAC-ATT-------------------------------TA-AGTAGCGTTTGATA-GTAGCTAGCAGCTCTAGTCCTTATCGGGCA--CTGGCCAA--------------------------AATGATTGACAACG-----C-T--------------------------------------------TCC--CAAGGGCTCTTGAACTAATCAAAGTC--------------TTATTT------C---TGT------------------------------TCCCCCAGCAGCAACATGGAGATGATCAACGTGAACCCGCACACGCAGTACTCCTAGACCG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CG-AGAAT----------------------------------------------ATCA----TATCAT-CAT-AACCCATTGAAG----T-CCCCA--TAATTAAGCATGGC---CAAAATAC-----C-TTTGC----TCGGTGCGCGATAAGTAT---TGAC-ATT-------------------------------TA-AGTAGCGTTTGATA-GTAG----AAGCTTGAATCCTTATCGGGCA--CTGGCCAA--------------------------ATTGATTGACAACT-----A----------------------------------------GCTGAATTT--TAGGGGCTCTTGAACTAATCAACGTT--------------TTATCT------C---TGT------------------------------TTCCCCAGCAGCAACATGGAGATGATCAACGTGAATCCGCACACGCAGTACTCCTAGACCG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CG-GGAAT----------------------------------------------TT-------------CAT-AGCCCATTGAAG----C-CC-CC--TCAGTTCTCATGGC---AAAATTTG-----C-TTTGC----TCGGTGCGCGATAAGTAT---TGAC-ATT-------------------------------TA-AGTAGCGATTGATA-GTAG-------TTTGACTCCTTATCGGGCA--CTGGCCAA--------------------------AATGATTGACAACT-----TCT--------------------------------------------TTG--TAGGGGCTCTTGAACTAATCAAAGTT--------------TTATTT------C---TGT------------------------------TTCCCCAGTAGCAACATGGAGATGATCAACGTGAATCCGCACACGCAGTACTCCTAGACCG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CG-AGAAT----------------------------------------------AT-------------CAT-AACCCATTGAAG----C-CG-CA--TTATTTATCATGGC---CAAATTTG-----C-TTTGC----TCGGTGCGCGATAAGTAT---TGAT-ATT-------------------------------TA-AGTAGCGATTGATA-GTGG-------CTTTACTCCTTATCGGGCA--CTGGCCAA--------------------------AATGATTGACAACC-----ATT--------------------------------------------TCC--TATGGGCTCTTGAACTAATCAAAGTT---------------TATTT------C---TGT------------------------------TTCCCCAGCAGCAACATGGAGATGATCAATGTGAACCCGCACACGCAGTACTCCTAGGCCG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CA-GGAAGAAAAAGCCCAGAAGCCACCATCACCTAACCGAAGTCC----CACACC-CACTCCCACCAT-CAT-CAT------------------CA--TCATATCTCATGGC---CAAATAAA----GCTATTGC-----CGGTGCGCGATAAGTAT---TGAT-GAT--------------------------GCT--TA-AGTAG-----------------------TTGTGGCTTATCGGGCACACTGGCCAA-----------------------A--AATGATTGACAAGC-----ATT--------------------------------------------T-TTAAGAGGGCTCTTGAACTAATCGAATGTTTCCGTTTCTGTTTCTGTTT------C---TGT------------------------------TCCCCCAGCAGCAACATGGAGATGATCAACGTGAATCCCCACACGCAGTACTCTTAGGCCC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CA---TAC----------------------------------------------TT-------------CATCCATCCATCAAAA----C--------------CTCATGG-----------------------G----GCGGTGCGCGATAAGTAT---TCAAAAATTAAAAACA-AGAAAAAAAGATCCAAAGTT--GA-AGTAGCGATTA-------G-------C----GAACTTATCGGGCA--CTGGCCAAAAAAAAAAAATAATAA-------T--AATGATTGACACCCGAAGCAATGTTGGCCAAAGTCTAATCTAAGGTACTTACTCC----------------------------------------TA--------------CTATTT------C---CGT------------------------------TTTCGCAGCAGCAACATGGAGATGATCAACGTGAACCCGCACACGCAGTACTCCTAGGCC-	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCCGCACACGCAGTACTC........	21	1	2.00	2	0	2	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTGAACCCGCACACGCAGTACTCC.......	27	1	2.00	2	0	2	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACATGGAGATGATC..................................	20	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGATGATCAACGTGAACCCGCA....................	26	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACGCAGTACTCCTAGGC..	20	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGATGATCAACGTGAA..........................	20	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACATGGAGATGATCAACGTGA...........................	28	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGATGATCAACGTGAACC........................	22	1	1.00	1	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAACGTGAACCCGCACACGCAGT............	26	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACCCGCACACGCAGTACTC........	22	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGTGAACCCGCACACGC...............	20	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................AAAAACA-AGAAAAAAAGA............................................................................................................................................................................................................................................................................................................................	18	3	0.33	1	0	1	0	0	0	0

droBip1

CA-TCCAC----------------------------------------------TT-------------CAT-CATCCATCAAAC----C------------TCCTCATGGC---------------------------CCGGTGCGCGATAAGTAT---TCAA-AATTGAAACCAAAGAAAAAA-------AACTTGAAG-TGTAGCGATTA----G---------------GAACTTATCGGGCACACTGGCCAACAG--------------------A--AATGATTGACACCCGC--CCATGTTGGGCAAAGTCTAA----------------------------------------------TCT----AAGGTA--------------CTCTTT------C---CGT------------------------------TTCCACAGCAGCAACATGGAGATGATCAACGTGAACCCGCACACGCAGTACTCCTAGGCC-	Size	Hit Count	Total Norm	Total
No Reads

dp5

AGGAGGAG------C---------------------------TCTTGTACATACC-CA----CACCATCCAT-AACCATTTGAAG----C-TT-CATAT-----------------------------C-TTTACCCTGGGAGTGCGCGATAAGTAT---C----AAG-------------------------------TA-ATAATCTTTCGACT-------------------------------------------------------------------ATTGATTGACACATGT--------------------------ACACACCCACTACTACTATTTGCTC-T--CTATTGCACTTGAACTAATCAAAGCC---------CG---TTAT-T------G---TGT--------------CC-------------ACTCCACAGCAGCAACATGGAGATGATCAACGTGAATCCACATACGCAGTACTCCTAGATGC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACATGGAGATGATCAAC...............................	24	1	2.00	2	0	1	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACATGGAGATGATCAACGTGA...........................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGATGATCAACGTGAATCCAC.....................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAACGTGAATCCACATACGCAGTACT.........	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCAACGTGAATCCAC.....................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCACATACGCAGTACTCCTA.....	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACATGGAGATGAT...................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................TACTACTATTTGCTC-T--CTATT.................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGCAGTACTCCTAGATGC	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCAACGTGAATCCACATACGCA..............	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATGGAGATGATCAACGTGAATCCAC.....................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................GGAGTGCGCGATAAGTAT---C----AAC-------------------------------.................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACGTGAATCCACATACGCAGT............	25	1	1.00	1	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................................................................AATCTTTCGACT-------------------------------------------------------------------ATTGATT......................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGCAGTACTCCTAGAT..	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACATGGAGATGATCAA................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGAGATGATCAACGTGA...........................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0

droPer2

AGGAGGAG------C---------------------------TCTTGTACATACC-CA----CACCATCCAT-AACCATTTGAAG----C-TT-CATAT-----------------------------C-TTTACCCTGGGAGTGCGCGATAAGTAT---C----AAG-------------------------------TA-ATAATCTTTCGACT-------------------------------------------------------------------ATTGATTGACACATGT--------------------------ACACACCCACTACTACTATTTGCTC-T--CTATTGCACTTGAACTAATCAAAGCC---------CG---TTAT-T------G---TGT--------------CC-------------ACTCCACAGCAGCAACATGGAGATGATCAACGTGAATCCACATACGCAGTACTCCTAGATGC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGATCAACGTGAATCCACATACGCAG.............	29	1	2.00	2	2	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGCAGTACTCCTAGATGC	21	1	2.00	2	2	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATGGAGATGATCAACGT.............................	22	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACATGGAGATGAT...................................	19	1	1.00	1	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCCACATACGCAGTACTC........	23	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGTGAATCCACATACGCAGT............	23	1	1.00	1	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATGGAGATGATCAACGTG............................	21	1	1.00	1	0	1	0	0	0	0

droWil2

CA-TTA------------------------------------------------TG-------------CA-----------------------------------TACGAA---AAAATTTG-----A-ATCAA----AAAGTATGCGATAAGTAT---TGAA-TTG--TAAGATATGGC-------------A---------TTTCAATTCATT-GTGG-------TTT--------AT--GGC---CTGGCCCGAAAAAAACCTTT-TATCAGCGCCA--TAAGAA--------------AAGCTAA---------------------------------------TCT--CAAAG----TCAATCTAATCACATTT--CC-----------TTTTTCTCTTTCTTGTGTTTCTCCCGTTGTCTCC---------A---ACTTAACAGCAGCAACATGGAAATGATCAACGTGAATCCGCATACGCAGTATTCCTAGGC--	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGCATACGCAGTATTCCTAGGC--	25	1	2.00	2	0	2	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCCGCATACGCAGT............	19	1	2.00	2	0	1	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATGGAAATGATCAACGTGA...........................	22	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACATGGAAATGATCAACGTG............................	24	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTCC---------A---ACTTAACAGCAGC.................................................	21	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................................................TT-GTGG-------TTT--------AT--GGC---CTGGCC.........................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCAACGTGAATCCGCATACGCA..............	26	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATCAACGTGAATCCGC.....................	20	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACATGGAAATGATCAAC...............................	21	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATGGAAATGATCAACGT.............................	20	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAAATGATCAACGTGAAT.........................	21	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTGAATCCGCATACGCAGT............	22	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGGAAATGATCAACGTGA...........................	21	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAAATGATCAACGTGA...........................	19	1	1.00	1	0	0	1	0	0

droVir3

CA-TGCCT----------------------------------------------CT-------------CAA-GTCCCATCAAATAAAACAAA-AA--ATGTCT-AAATGGCTGTCAAAGCAAACGAGC-T---G----TTGGTGCGTGATAAGTAT---AACC-ATA---------------------------T---TTCCG--T--------------------------CAGCTTATCAG-C------GCCAG-----------------------T--TATGATTGCAATCA----------------------------------------------------TTT--CAAAA----TATAACTAATCTATTTTTTTACTTTGTCTCGCC-CTT------C---TGG-----------------------------AATATATAGCAGCAACATGGAGATGATAAACGTTAATCCACATACGCAGTACTCCTAGA---	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................TTTTTTACTTTGTCTCGCC-CTT------C---..............................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACATGGAGATGATAAACGTT............................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACATGGAGATGAT...................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCAGCAACATGGAGATG.....................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATGGAGATGATAAACG..............................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACATGGAGATGATAAACGTTAAT.........................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................GTCAAAGCAAACGAGC-T---G----T............................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CA-AGTGC----------------------------------------------CT-------------CAA-GGTCCATCAAAG----C-AA-AA--ATATCT-AAATGGCTGTCGAATTTA----CTGAGCAT----TTGGTGCGCGATAAGTAT---TTCC-ATT-------------------------------TA--CCATC--------------------------GGCTTATCAG-C------GCCAA-----------------------TTAAATGATTATAAACT-----T-TG-C----------------------------------------ATTT--AAAAA----TATAACTAATCAACTATTTCT-----------TTCTT------C---TAT--------------ACACATACATTAACCTATATATAGCAGCAACATGGAGATGATCAGCGTCAATCCGCACACGCAGTACTCGTAAA---	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATGGAGATGATCAGCGTCA...........................	22	1	2.00	2	1	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATGGAGATGATCAGCGTC............................	21	1	1.00	1	0	0	0	0	0	1
................................................................................................................TGTCGAATTTA----CTGAGCAT----TTGGTGCGC....................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACATGGAGATGATCAGCGTC............................	24	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACATGGAGATGATCAGCGT.............................	21	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................CTGAGCAT----TTGGTGCGCG...................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0

droGri2

G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC--------------CTCTTT------C---TGG-----------------------------TACATACAGCAGCAACATGGAAATGATGAGCGTTAATCCACACACACAGTACTCCTAGA---	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGATGAGCGTTAATCCACACA..................	25	1	1.00	1	0	1
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGAGCGTTAATCC.......................	19	1	1.00	1	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGAGCGTTAATCCACACA..................	22	1	1.00	1	0	1

dsi_15183

x:15442835-15442984 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads