ID:

dsi_15122

 Coordinate:

3r:4274343-4274492 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-25.5 -25.4 -25.2

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CTCGGAGGTGGCAACCGTCGCCCAGCCGACGTCCTTTGCTATCCGTTGGAGAGCATCAAAGAGTTCGAGCAGATCTCTGAGGCCTGGAAGCGCCTGCTAGCCGAGTTGCTTAAGAAAGGTGGACATCTCAGATCCCTAAATTTCAGCCCATATCGTAAATAAATCCATTATTTAACCCACTTCTCTTCTTGTTTCTGCAGAGGAGGACGACTCACAGATCTTCGTTAAGTTCTTTCGTTTTCACAAGTGC
**************************************************((((........))))..(((((.....((((...((((((((((.(((((......)))..))..))))).....((.((((......)))).)).........(((((((.....))))))).....))))))))).....)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
......................................................................AGATCTCTGAGGCCT..................................................................................................................................................................... 15 0 1 1.00 1 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................GATCTTCGTTAAGTTCTTTCGTTTT......... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TCACAGATCTTCGTGAAGTTCTTTCGTT........... 28 1 1 1.00 1 0 0 0 1 0 0 0 0 0
.............................................................AGTTCGAGCAGATCTCTGAGGCC...................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................GGACGACTCACAGATCTTCGT......................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CTCACAGATCTTCGTTAAGTT................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
...........................................................................TCTGAGGCCTGGAAGCGCCT........................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................GAGCAGATCTCTGAGGCCTGGAAGCGCCT........................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................GTTCGAGCAGATCTCTGAGGCC...................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GAAGAGGACGACTCACAGATC.............................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................GTTCTTTCGTTTTCACAAGTGC 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................ATCTTCGTTAAGTTCTTTCGTT........... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................GTTCTTTCGTTTTCACAAG... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................AAGAGGAGGACGACTCACAGATC.............................. 23 1 1 1.00 1 0 0 0 0 0 1 0 0 0
..............................................................GTTCGAGCAGATCTCTGAGGC....................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0
................................................................TCGAGCAGATCTCTGAGGCCTGGAAGC............................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................GGACGACTCACAGATCGTCGGTAAGTT................... 27 2 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................ATCAAAGAGTTCGAG..................................................................................................................................................................................... 15 0 2 0.50 1 0 0 1 0 0 0 0 0 0
............................................................................................................................ATCTCAGATCCGTAACTT............................................................................................................ 18 2 3 0.33 1 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................TCTTTCATTGTCACAAGT.. 18 2 6 0.17 1 0 0 0 0 0 0 0 1 0
..CGGAGGTGGGAACCG......................................................................................................................................................................................................................................... 15 1 7 0.14 1 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................................GAGCTGGACGACTCACAG................................. 18 2 8 0.13 1 0 0 0 1 0 0 0 0 0
.............................................................................................CTGGTAGACGAGTTGCTAAAGA....................................................................................................................................... 22 3 20 0.10 2 0 0 2 0 0 0 0 0 0
..........GCAACCGTAGCTCAGC................................................................................................................................................................................................................................ 16 2 20 0.10 2 0 0 0 0 0 0 0 0 2
.....................................................................................................................................................................................................................ACAGATCTTCGTGAA...................... 15 1 14 0.07 1 0 0 0 0 0 0 0 1 0
...................................................................................................................AAGGTGTAGATATCAGATC.................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

GAGCCTCCACCGTTGGCAGCGGGTCGGCTGCAGGAAACGATAGGCAACCTCTCGTAGTTTCTCAAGCTCGTCTAGAGACTCCGGACCTTCGCGGACGATCGGCTCAACGAATTCTTTCCACCTGTAGAGTCTAGGGATTTAAAGTCGGGTATAGCATTTATTTAGGTAATAAATTGGGTGAAGAGAAGAACAAAGACGTCTCCTCCTGCTGAGTGTCTAGAAGCAATTCAAGAAAGCAAAAGTGTTCACG
**************************************************((((........))))..(((((.....((((...((((((((((.(((((......)))..))..))))).....((.((((......)))).)).........(((((((.....))))))).....))))))))).....)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
....................................................CGTAGTTTCTCAAGCTCGT................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................GTAGTTTCTCAGGCT...................................................................................................................................................................................... 15 1 12 0.67 8 0 0 0 4 2 1 1 0
...............................................................................TCAGGACCTGCGCGGACGA........................................................................................................................................................ 19 2 2 0.50 1 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................................AAGAAAGCAGAGGAGTTCACG 21 3 3 0.33 1 0 1 0 0 0 0 0 0
............TTGGCAGCGGGCCGGTT............................................................................................................................................................................................................................. 17 2 10 0.30 3 0 3 0 0 0 0 0 0
...................................................................................................CGGCTCAAGGAATTCTTCC.................................................................................................................................... 19 2 5 0.20 1 0 0 0 0 0 1 0 0
.............TGGCAGCGGGCCGGTTGTA.......................................................................................................................................................................................................................... 19 3 12 0.17 2 0 2 0 0 0 0 0 0
.........................................................................................................................................................................................AAGAAAAAAGACGTCTGCT.............................................. 19 2 7 0.14 1 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................ACTCCTGCGGAGTGTCT................................ 17 2 9 0.11 1 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................................TAGAAAGTAACAGTGTTCAC. 20 3 10 0.10 1 0 0 0 0 0 0 1 0
...................................................................................................CGGCTCAAGGAATTCTTCCG................................................................................................................................... 20 3 10 0.10 1 0 0 0 0 0 1 0 0
..................................................CTAGTAGTTTCTCAGGCT...................................................................................................................................................................................... 18 2 11 0.09 1 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................GACGTCTCCTCCGGC......................................... 15 1 12 0.08 1 0 0 0 0 1 0 0 0
............................................................................................................................................AAAGTCGGCTATCGCATTG........................................................................................... 19 3 15 0.07 1 0 1 0 0 0 0 0 0
..................................................CTAGTAGTTTCTCAGGCTT..................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1
.........CTGTTGGCAGCGGGCCGGT.............................................................................................................................................................................................................................. 19 3 20 0.05 1 0 1 0 0 0 0 0 0
............................................................................................................................................................................ATTGGCTGAAGAAAAGAAA........................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0

Generated: 04/24/2015 at 12:10 AM