ID:

dsi_15100

Coordinate:

3l:7867500-7867649 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

five_prime_UTR [3l_7866899_7867499_+]; exon [3l_7866899_7867499_+]; intron [3l_7867500_7873906_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AACGAATCGCCGTAGAAACGCACTCGAATCGCCCCAAAGTTGCACTCTCTGTAAGTTGAACATCCGAATTTAAAAGTAATTCAAAGCGGTATATTTGTAGATTCTTTCTATAAATCGAAGTTTTTCTTACTTTTAGTTTATTTTGATTACTAATTTCAAAGTACGCCCTCGCGATTTTGTATACATTTCCGTAGGCCGACCAATTTTTTCCTAAAATGGAATTTTCTATGACCGCAAACAAAAAAACAAA
**************************************************....((((...........((((((((((...(((((.....(((((((((.....)))))))))....)))))..))))))))))..((((((((.........)))))))).(((..((.((.............))))..)))))))**************************************************
Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
M025
embryo
M053
female body
SRR902008
ovaries
SRR553485
Chicharo_3 day-old ovaries
SRR618934
dsim w501 ovaries
SRR902009
testis
M024
male body
SRR553487
NRT_0-2 hours eggs
......TCGCCGTAGAAACGCACTCGAATCG........................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........GCCGTAGAAACGCACCCGAATC............................................................................................................................................................................................................................ 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0
........GCCGTAGAAACGCACTCGAATCGCC......................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...........GTAGAAACGCACTCGAATCGCCC........................................................................................................................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................TGTATAGGTTTCCGTAGG....................................................... 18 2 2 0.50 1 0 0 0 0 1 0 0 0 0
.............................................................................AACTCTAAGCGGTATA............................................................................................................................................................. 16 2 20 0.15 3 0 0 0 0 0 3 0 0 0
.........................................................................................................................................................................................TTTCCGTAGGCCGATGAAGT............................................. 20 3 7 0.14 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................ATTACCGCGAACAAAAAAA.... 19 2 9 0.11 1 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................GGCCGTCCGATTTTTTCGT...................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0
......................................GTTGCACTCTCTTTAAA................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TTGCTTAGCGGCATCTTTGCGTGAGCTTAGCGGGGTTTCAACGTGAGAGACATTCAACTTGTAGGCTTAAATTTTCATTAAGTTTCGCCATATAAACATCTAAGAAAGATATTTAGCTTCAAAAAGAATGAAAATCAAATAAAACTAATGATTAAAGTTTCATGCGGGAGCGCTAAAACATATGTAAAGGCATCCGGCTGGTTAAAAAAGGATTTTACCTTAAAAGATACTGGCGTTTGTTTTTTTGTTT
**************************************************....((((...........((((((((((...(((((.....(((((((((.....)))))))))....)))))..))))))))))..((((((((.........)))))))).(((..((.((.............))))..)))))))**************************************************
Read size # Mismatch Hit Count Total Norm Total M024
male body
M023
head
M053
female body
SRR618934
dsim w501 ovaries
SRR1275487
Male larvae
M025
embryo
SRR553487
NRT_0-2 hours eggs
SRR553486
Makindu_3 day-old ovaries
SRR553488
RT_0-2 hours eggs
SRR1275483
Male prepupae
SRR553485
Chicharo_3 day-old ovaries
SRR1275485
Male prepupae
GSM343915
embryo
.............................CCGGGGTTTCAACGGGAGA.......................................................................................................................................................................................................... 19 2 2 1217.00 2434 1758 624 26 7 0 19 0 0 0 0 0 0 0
.............................CCGGGGTTTCAACGGGAG........................................................................................................................................................................................................... 18 2 5 345.80 1729 1177 510 24 3 0 12 0 1 1 0 0 0 1
.............................CCGGGGTTTCAACGGGAGAG......................................................................................................................................................................................................... 20 2 2 264.00 528 382 112 25 4 0 4 0 1 0 0 0 0 0
..........................TTGCCGGGGTTTCAACGGGAGA.......................................................................................................................................................................................................... 22 3 1 116.00 116 62 16 32 3 1 0 2 0 0 0 0 0 0
...........................TGCCGGGGTTTCAACGGGAGA.......................................................................................................................................................................................................... 21 3 1 98.00 98 35 10 43 8 1 1 0 0 0 0 0 0 0
..............................CGGGGTTTCAACGGGAGA.......................................................................................................................................................................................................... 18 1 1 47.00 47 20 7 8 4 7 0 0 0 0 0 1 0 0
...........................TGCCGGGGTTTCAACGGGAGAG......................................................................................................................................................................................................... 22 3 1 44.00 44 9 0 33 1 0 0 0 0 0 0 0 1 0
..........................TTGCCGGGGTTTCAACGGGAGAG......................................................................................................................................................................................................... 23 3 1 41.00 41 13 3 24 1 0 0 0 0 0 0 0 0 0
.............................CCGGGGTTTCAACGGGAGAGG........................................................................................................................................................................................................ 21 3 6 38.17 229 152 54 20 0 0 3 0 0 0 0 0 0 0
..............................CGGGGTTTCAACGGGAGAG......................................................................................................................................................................................................... 19 1 1 31.00 31 16 3 7 2 1 0 1 1 0 0 0 0 0
.........................CTTGCCGGGGTTTCAACGGGAGA.......................................................................................................................................................................................................... 23 3 1 27.00 27 10 1 13 1 0 0 2 0 0 0 0 0 0
.........................CTTGCCGGGGTTTCAACGGGAGAG......................................................................................................................................................................................................... 24 3 1 26.00 26 9 0 16 0 0 0 0 0 1 0 0 0 0
.........................CTTGCCGGGGTTTCAACGGGAG........................................................................................................................................................................................................... 22 3 1 19.00 19 7 1 11 0 0 0 0 0 0 0 0 0 0
............................GCCGGGGTTTCAACGGGAGA.......................................................................................................................................................................................................... 20 3 7 14.29 100 31 4 58 6 0 0 0 0 0 0 1 0 0
..........................TTGCCGGGGTTTCAACGGGAG........................................................................................................................................................................................................... 21 3 2 14.00 28 6 2 18 1 0 0 1 0 0 0 0 0 0
..............................CGGGGTTTCAACGGGAGAGG........................................................................................................................................................................................................ 20 2 2 12.00 24 8 5 8 0 2 0 0 1 0 0 0 0 0
...........................TGCCGGGGTTTCAACGGGAG........................................................................................................................................................................................................... 20 3 6 10.50 63 31 3 25 3 0 0 0 0 1 0 0 0 0
............................GCCGGGGTTTCAACGGGAGAG......................................................................................................................................................................................................... 21 3 4 8.00 32 5 3 23 1 0 0 0 0 0 0 0 0 0
................................GGGTTTCAACGGGAGAG......................................................................................................................................................................................................... 17 1 1 7.00 7 0 0 0 0 4 0 0 0 1 2 0 0 0
...............................GGGGTTTCAACGGGAGAG......................................................................................................................................................................................................... 18 1 1 5.00 5 2 0 0 0 3 0 0 0 0 0 0 0 0
...............................GGGGTTTCAACGGGAGA.......................................................................................................................................................................................................... 17 1 1 4.00 4 0 0 0 0 2 0 1 0 0 1 0 0 0
.............................CAGGGGTTTCAACGGGAGA.......................................................................................................................................................................................................... 19 3 20 3.10 62 37 23 1 0 0 1 0 0 0 0 0 0 0
................................GGGTTTCAACGGGAGA.......................................................................................................................................................................................................... 16 1 2 2.50 5 0 0 0 2 0 0 0 1 2 0 0 0 0
..............................CGGGGTTTCAACGGGAG........................................................................................................................................................................................................... 17 1 2 2.00 4 0 0 0 2 0 0 0 2 0 0 0 0 0
..........................TTTCCGGGGTTTCAACGGGAGAG......................................................................................................................................................................................................... 23 3 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0
.............................CAGGGGTTTCAACGGGAGAG......................................................................................................................................................................................................... 20 3 7 1.86 13 11 2 0 0 0 0 0 0 0 0 0 0 0
...............................GGGGTTTCAACGGGAG........................................................................................................................................................................................................... 16 1 2 1.50 3 0 0 0 3 0 0 0 0 0 0 0 0 0
..........................TTGTCGGGGTTTCAACGGGAGA.......................................................................................................................................................................................................... 22 3 2 1.50 3 1 1 1 0 0 0 0 0 0 0 0 0 0
.........................CTTGCCGGGGTTTCAACG............................................................................................................................................................................................................... 18 2 5 1.40 7 2 1 3 1 0 0 0 0 0 0 0 0 0
.............................TCGGGGTTTCAACGGGAGA.......................................................................................................................................................................................................... 19 2 4 1.25 5 3 2 0 0 0 0 0 0 0 0 0 0 0
..........................TTGTCGGGGTTTCAACGGGAGAG......................................................................................................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................CTTGACGGGGTTTCAACGGGAG........................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................TTTCCGGGGTTTCAACGGGAGA.......................................................................................................................................................................................................... 22 3 2 1.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................CCGGGGTTTCAACGTGAG........................................................................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................CTTGCCGGGGTTTCAACGGGA............................................................................................................................................................................................................ 21 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................CCGGGGTTTCAACGAGAGA.......................................................................................................................................................................................................... 19 2 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................GGGGTTTCAACGGGAGAGG........................................................................................................................................................................................................ 19 2 4 0.75 3 1 0 2 0 0 0 0 0 0 0 0 0 0
................................GGGTTTCAACGGGAG........................................................................................................................................................................................................... 15 1 12 0.67 8 0 0 0 3 1 0 1 1 1 0 1 0 0
..............................CGGGGTTCCAACGGGAGAG......................................................................................................................................................................................................... 19 2 3 0.67 2 1 0 1 0 0 0 0 0 0 0 0 0 0
................................GGGTTTCAACGGGAGAGG........................................................................................................................................................................................................ 18 2 8 0.50 4 0 0 3 0 0 0 1 0 0 0 0 0 0
..........................TTGCCGGGGTTTCAACGGGA............................................................................................................................................................................................................ 20 3 4 0.50 2 0 0 2 0 0 0 0 0 0 0 0 0 0
................................GGGTTTCAGAGTGATAGACAT..................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................CTTGCCGGGGTTTCAACGGG............................................................................................................................................................................................................. 20 3 8 0.50 4 0 0 4 0 0 0 0 0 0 0 0 0 0
.............................ACGGGGTTTCAACGGGAGA.......................................................................................................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................TTGCCGGGGTTTCAACGCGAG........................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................CGGGGTTTCAACGGGATA.......................................................................................................................................................................................................... 18 2 5 0.40 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...........................TGTCGGGGTTTCAACGGGAGAG......................................................................................................................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................TTGTCGGGGTTTCAACGGGAG........................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................CGGGGTTTCAACGTGAGAGGTTT..................................................................................................................................................................................................... 23 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................TCGGGGTTTCAACGGGAG........................................................................................................................................................................................................... 18 2 9 0.33 3 3 0 0 0 0 0 0 0 0 0 0 0 0
.......................AGCTTGCCGGGGTTTCAA................................................................................................................................................................................................................. 18 2 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................TTGCCGGGTTTCAACGGGAGA.......................................................................................................................................................................................................... 21 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................CGGGGTTTCAACGGGA............................................................................................................................................................................................................ 16 1 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................CGGGGTTTCAACGGCAGAG......................................................................................................................................................................................................... 19 2 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................CGGGGTTTCAACGGGAGAGGA....................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................TGTCGGGGTTTCAACGGGAGA.......................................................................................................................................................................................................... 21 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................CCGGGGTTTCAACCGGAGAG......................................................................................................................................................................................................... 20 3 9 0.22 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..............................CGGGGTTTCAACTGGAGA.......................................................................................................................................................................................................... 18 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................GGTTTCAACGGGAGAG......................................................................................................................................................................................................... 16 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................AAAGCTTCAAGCGCGAGCGC............................................................................. 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................ACGGGGTTTCAACGGGAG........................................................................................................................................................................................................... 18 2 11 0.18 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.............................CCGGGGTTTCAACGGGAGGG......................................................................................................................................................................................................... 20 3 11 0.18 2 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................CCGGGGTCTCAACGGGAGAG......................................................................................................................................................................................................... 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TATGTAAAGGCATGCTG..................................................... 17 2 19 0.16 3 0 0 0 3 0 0 0 0 0 0 0 0 0
.............................CTGGGGTTTCAACGGGAGA.......................................................................................................................................................................................................... 19 3 20 0.15 3 2 0 0 1 0 0 0 0 0 0 0 0 0
.............................CCGGGGTTTCAACGGGAGAT......................................................................................................................................................................................................... 20 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................CTGGGTTTCAACGGGAGAGG........................................................................................................................................................................................................ 20 3 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................CCGGGGTTTCAGCGGGAGAG......................................................................................................................................................................................................... 20 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................CGGGGTTTTAACGGGAGA.......................................................................................................................................................................................................... 18 2 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................TGTCGGGGTTTCAACGGGAG........................................................................................................................................................................................................... 20 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................CCGGGGTTTCAACGGGAGCG......................................................................................................................................................................................................... 20 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................GGCGTTTGTTTTTTT.... 15 0 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................CCGGGTTTCAACGGGAGA.......................................................................................................................................................................................................... 18 2 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................CCGGGGTTTCAACGGGACAG......................................................................................................................................................................................................... 20 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................TGCCGGGGTTTCAACGAGAG........................................................................................................................................................................................................... 20 3 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................GTCGGGGTTTCAACGGGAGA.......................................................................................................................................................................................................... 20 3 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TTTACCTTAAAAGGTGCTGGT................ 21 3 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................CCGGGGTTTCAATGGGAGAG......................................................................................................................................................................................................... 20 3 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................TTGTCGGGGTTTCAACGGGA............................................................................................................................................................................................................ 20 3 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................GTTTCAACGGGAGAG......................................................................................................................................................................................................... 15 1 14 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................GCGGGAGCGCTGCAACTT..................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CTGGTTCAAACAGGATTA................................... 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................CCGGGGTTTCAATGGGAGA.......................................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................CCGTGGTTTCAACGGGAGA.......................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0

Generated: 04/24/2015 at 10:30 AM