ID:

dsi_15084

 Coordinate:

3r:17382121-17382279 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-22.6 -22.6 -22.5

Flybase annnotation

intron [3r_17382012_17382072_-]; five_prime_UTR [3r_17382322_17382666_-]; CDS [3r_17382280_17382321_-]; CDS [3r_17382073_17382120_-]; exon [3r_17382073_17382120_-]; exon [3r_17382280_17382666_-]; intron [3r_17382121_17382279_-]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------################################################--
ATAGCAAAATGTCGATGCTGGCGAGAACAGTTGGACGCACGTTCATGCAGGTAAACGGCCATCCAAACCGCAGCTCTTACATAAACACTTGCTCGCGACGCGCTGTGCGAATATTTCTGCGCTGAGGCCCAATTCTTATACGTTTCTATTTTTTTGAGGTTATAATCCTAGCCAGCCTTAACGATTACATTCCATTCTTTTCGTTTTAGGCTGCGGCAGCACGTAGTCTGCACACCACGTCGACGGTTCGGGCTACGGT
**************************************************......((((.((.....((((((................))).)))..((((...............)))).)))))).........................(((((((............)))))))((((................)))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 M053
female body
 SRR618934
dsim w501 ovaries
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 O001
Testis
 O002
Head
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
......................GAGAACAGTTGGACGCAC........................................................................................................................................................................................................................... 18 0 1 5.00 5 1 1 0 0 3 0 0 0 0 0 0
...................................................................................................................................................................................................................................CTGCACACCACGTCGACG.............. 18 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0
.................CTGGCGAGAACAGTTGGACGC............................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................ACGTCGACGGTTCGAGCC..... 18 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................ACAGTTGGACGCACGTTCATGCAGGC............................................................................................................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................GGCGAGAACAGTTGGACGCA............................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......AAATGTCGATGCTGGCGAGAAC....................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GTCTGCACACCACGTCGACG.............. 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
....................GCGAGAACAGTTGGACGC............................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................ATTCTTTTCGTTTTAGGCT............................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................CGCACGTTCATGCAGGTAAACGGC........................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................GGCAGCACGTAGTCT.............................. 15 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..........GTCGATGCTGGCGAGAAC....................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........ATGTCGATGCTGGCGAGAAC....................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................GGCGAGAACAGTTGGACGCACGT......................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................GATTACATTCCATTCTTTTCGT....................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TGCACACCACGTCGACGGTTCGGGC...... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...................GGCGAGAACAGTTGGACGGACGC......................................................................................................................................................................................................................... 23 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...................GGCGAGAACAGTTGGACGCAC........................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTCCATTCTTTTCGTTTTAG.................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................CTGGCGAGAACAGTTGGACGCAC........................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............GATGCTGGCGAGAACAGTTGGACG.............................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................ACACCACGTCGACGGTTCGGGCTAC... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................................AGTCTGCACACCACGTCGACG.............. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GCGGCAGCACGTAGGCTGCACACCACGTC.................. 29 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..AGCAAAATGTCGATGCTGGC............................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........GTCGATGCTGGCGAGAACAGT.................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
..............ATGCTGGCGAGAACAGTTGGAC............................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GCGGCAGCACGTAGTCTG............................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TAGTCTGCACACCACGTCGACG.............. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..............ATGCTGGCGAGAACAGTTGGACGCAC........................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................ACAGTTGGACGCACGTTCATGCAGGCT.............................................................................................................................................................................................................. 27 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................TTCGACGGTTCGGGC...... 15 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
ATAGCAAAATGTCGATGCTGGC............................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CGTAGTCTGCACACCACGTCGACG.............. 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................ACGTCGACGGTTCGAGCCC.... 19 3 7 0.29 2 0 2 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................ACATTCCAGTCTGATCGTTTT.................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1
..............................TTGGACGCTCCTTCAAGCAG................................................................................................................................................................................................................. 20 3 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0
......................................................ACGGCCGGCCAAACCGCA........................................................................................................................................................................................... 18 2 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0
............................................ATGCTGGTAAACGGC........................................................................................................................................................................................................ 15 1 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0
.........TGTCTATGCTGCCGAGA......................................................................................................................................................................................................................................... 17 2 16 0.06 1 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................GGTTTTAGGCTGCGCCA......................................... 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

TATCGTTTTACAGCTACGACCGCTCTTGTCAACCTGCGTGCAAGTACGTCCATTTGCCGGTAGGTTTGGCGTCGAGAATGTATTTGTGAACGAGCGCTGCGCGACACGCTTATAAAGACGCGACTCCGGGTTAAGAATATGCAAAGATAAAAAAACTCCAATATTAGGATCGGTCGGAATTGCTAATGTAAGGTAAGAAAAGCAAAATCCGACGCCGTCGTGCATCAGACGTGTGGTGCAGCTGCCAAGCCCGATGCCA
**************************************************......((((.((.....((((((................))).)))..((((...............)))).)))))).........................(((((((............)))))))((((................)))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR618934
dsim w501 ovaries
.................................................................................................................................................................................................................................AAGACGTGTGGTGCAGCTGC.............. 20 1 1 2.00 2 2 0 0 0 0 0 0
......................................................................GTCGAGAATGTATTTGTGTA......................................................................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0
............................................................................................................................................................TCCAATACTCGGATCGCTC.................................................................................... 19 3 5 0.20 1 0 0 0 1 0 0 0
..........................................................................AGAATGTATTTGTGTA......................................................................................................................................................................... 16 1 15 0.13 2 0 0 1 0 1 0 0
............................................................................................................................................................CCCAATCTTAGGATCG....................................................................................... 16 2 10 0.10 1 0 0 0 0 1 0 0
.......................................................................TCGGGAATGTATATGTG........................................................................................................................................................................... 17 2 10 0.10 1 0 0 1 0 0 0 0
..........................................................................................................CGCTGATAAAGACGC.......................................................................................................................................... 15 1 12 0.08 1 0 0 0 0 0 0 1
...................................................................................................................................................................................................................................GAAGAGTGCTGCAGCTGCC............. 19 3 14 0.07 1 0 0 1 0 0 0 0
......................................................................................................................................................................................................................CCGTCGTTCATCAGGCGT........................... 18 2 15 0.07 1 0 0 0 0 0 1 0
................................................................................................................................GGTTAAGAATAGGCAGA.................................................................................................................. 17 2 20 0.05 1 0 0 1 0 0 0 0
...........................................................................................................................................................................GGTCGGTATTGGTAATGGA..................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0

Generated: 04/23/2015 at 05:44 PM