ID:

dsi_15071

Coordinate:

3r:10116891-10117040 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-9.7	-9.4	-9.0	-8.8

Flybase annnotation

exon [3r_10116800_10116890_-]; CDS [3r_10116800_10116890_-]; intron [3r_10116891_10118002_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## AATTCGTTGAAAATAGCCAGCGCAAGATATCAAATAACGCACTGAAATTTTCGTTTGGCTTGCCAAAAAAAATGGTTCTCGCAAAAAAATACGCGTACTCTCTATTTCTCTGAATTAGCTTTGTATCTAGAACACTTTTCGTAGTTGGGCCACAGTGTTTCCAAAAAGAATTCGAATTGCGATTCGTCTTTTGATTTTAGGAAAGTATTTCAAGGACATTTGGCATCGTTTCAAAAAGATCACAGCAGGT ******************************************************************...((((((((((.............((((...(((.(((...))).)))....)))).............)).))...))))...))********************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	O001 Testis	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	M024 male body	SRR902009 testis	SRR553486 Makindu_3 day-old ovaries
........................................................................................................................................TTTCGTAGTTGGGCCACAGT..............................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0
....................................................................AAAATGGTTCTCGCAAAA....................................................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0	0
................................................................................................................................AGAACACTTTTCGTAGTTGGGC....................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................ATTGCGATTCGTCTTTTGATTTTAGGAA...............................................	28	0	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................................GAATTGCGCTTCGTCT.............................................................	16	1	5	0.20	1	0	0	0	1	0	0	0
............................................AAATTTTCGTTTGGCTT.............................................................................................................................................................................................	17	0	5	0.20	1	0	0	1	0	0	0	0
................CCAGGGCAAGATATC...........................................................................................................................................................................................................................	15	1	11	0.09	1	0	0	1	0	0	0	0
..............................................ATTTTCGTTTGGCTT.............................................................................................................................................................................................	15	0	11	0.09	1	0	0	1	0	0	0	0
.....................................................TTTGGCTTGAGAAAAAAAA..................................................................................................................................................................................	19	2	15	0.07	1	0	0	1	0	0	0	0
..................................................................................................................................................................................................TTTTCGGACAGTATTTCAAC....................................	20	3	18	0.06	1	0	0	0	0	1	0	0
........................................................................................................................................TTTCGTAGTGGGGACAC.................................................................................................	17	2	18	0.06	1	0	0	1	0	0	0	0
........................................................................................................................................................................................CGTGTTTTGAGTTTAGAAAA..............................................	20	3	18	0.06	1	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................TCGGCATCGTTTTAAAAAAA...........	20	3	20	0.05	1	0	0	0	0	0	0	1

Anti-sense strand reads

TTAAGCAACTTTTATCGGTCGCGTTCTATAGTTTATTGCGTGACTTTAAAAGCAAACCGAACGGTTTTTTTTACCAAGAGCGTTTTTTTATGCGCATGAGAGATAAAGAGACTTAATCGAAACATAGATCTTGTGAAAAGCATCAACCCGGTGTCACAAAGGTTTTTCTTAAGCTTAACGCTAAGCAGAAAACTAAAATCCTTTCATAAAGTTCCTGTAAACCGTAGCAAAGTTTTTCTAGTGTCGTCCA ********************************************************************************************...((((((((((.............((((...(((.(((...))).)))....)))).............)).))...))))...))******************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM343915 embryo	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR902009 testis	M023 head
.......................................................................................................................................................TGTCACATAGTTTTGTCTTAAG.............................................................................	22	3	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................AGCCGGTGTCACAAAGG........................................................................................	17	1	2	0.50	1	0	0	1	0	0	0
..........................................................................................TGCGCATGACAGATAA................................................................................................................................................	16	1	2	0.50	1	0	1	0	0	0	0
................................................................................................................................................................................................................................TAGCAAAGTTTTCCTA..........	16	1	3	0.33	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................CCGTAGTCAAGTTTTTCT...........	18	2	4	0.25	1	0	0	0	1	0	0
..........TTTATCGGTCGCGTTAGAGA............................................................................................................................................................................................................................	20	3	6	0.17	1	0	0	0	0	1	0
........................................................................................................................................................................TTCAGATTAACACTAAGCAG..............................................................	20	3	9	0.11	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................CGCAGAAAAGTTTTTCGAGT........	20	3	10	0.10	1	0	1	0	0	0	0
............................................................................................................................................................................................................................ACCGTAGCAACGTTCTT.............	17	2	20	0.05	1	0	1	0	0	0	0
..............................................................................................................................................ACAACTCGGTGTCGCAAAG.........................................................................................	19	3	20	0.05	1	1	0	0	0	0	0

Generated: 04/24/2015 at 10:29 AM