dsi_15057

five_prime_UTR [3r_19099916_19100279_+]; exon [3r_19099916_19100279_+]; intron [3r_19100280_19105225_+]

Name	Class	Family	Strand
(TG)n	Simple_repeat	Simple_repeat	+

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TTGGAGAGATCGGATGTACGTGTGTACGTACATACAAACATAGCTGCTATGTAGGCTCATATGTGTGTCAGTGTGCCAAGTTGGGAACTTTCAGTGTCAACACGTGCATATACTATCTCATTCGCTCCTATTTACCTTGCTGTTTACTTACAACACTTTGTTGCTGTAATTACTCTGCCTTATCGGTGTGTGTGTGTGTGTATGTGTGTTGTTGTTTCCTGCGCTCCGGTATAATTCGCTCACTCTCTCG ************************************************...(((.(((.((.....))))).)))(((((...))))).........(((((((((((((((.........((.............))...((((...(((((...)))))..))))...............))))))))))))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	O001 Testis	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs
.......................................................................................................................................................................................................................TTCCTGCGCTCCGTTATAA................	19	1	1	1.00	1	0	1	0	0	0
.TTGATAGATCGGATGTA........................................................................................................................................................................................................................................	17	2	8	0.50	4	4	0	0	0	0
...GATAGATCGGATGTA........................................................................................................................................................................................................................................	15	1	6	0.50	3	3	0	0	0	0
............................................................................................................................................................................................TGTGTGTGTGTGTATGTGTGTTG.......................................	23	0	3	0.33	1	0	0	0	1	0
....AGAGATCGTATGTACG......................................................................................................................................................................................................................................	16	1	4	0.25	1	0	0	1	0	0
...GATAGATCGGATGTAG.......................................................................................................................................................................................................................................	16	2	20	0.20	4	4	0	0	0	0
...................................................................................................................................................................................................................TTGTTTTGTGCGATCCGGTA...................	20	3	13	0.15	2	0	0	2	0	0
............................................................................................................................................................................................TGTGTGTGTGTGTATGTGTGTTGA......................................	24	1	9	0.11	1	0	0	0	1	0
....AGAGATCGGATGAAAGGGT...................................................................................................................................................................................................................................	19	3	18	0.11	2	0	0	2	0	0
........................................GAACTGCTATGTAGGCT.................................................................................................................................................................................................	17	2	10	0.10	1	0	0	0	0	1
.........................................AACTGCTATGTAGGCTT................................................................................................................................................................................................	17	2	13	0.08	1	0	0	0	0	1
.TTGATAGATCGGATGTAG.......................................................................................................................................................................................................................................	18	3	20	0.05	1	1	0	0	0	0

AACCTCTCTAGCCTACATGCACACATGCATGTATGTTTGTATCGACGATACATCCGAGTATACACACAGTCACACGGTTCAACCCTTGAAAGTCACAGTTGTGCACGTATATGATAGAGTAAGCGAGGATAAATGGAACGACAAATGAATGTTGTGAAACAACGACATTAATGAGACGGAATAGCCACACACACACACACATACACACAACAACAAAGGACGCGAGGCCATATTAAGCGAGTGAGAGAGC ************************************************...(((.(((.((.....))))).)))(((((...))))).........(((((((((((((((.........((.............))...((((...(((((...)))))..))))...............))))))))))))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	M023 head	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries
............................................................................................TCACAGTTGTGCACGTATAT..........................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0
..................................................................................................................................................................................................................CAACAAAGGACGAGAG........................	16	1	6	0.67	4	4	0	0	0	0
................................................................................................................................................ATGAATGTTGTGGAA...........................................................................................	15	1	15	0.40	6	0	0	4	0	2
...........................................................................................................................CGAGGATAAATTGGACGA.............................................................................................................	18	2	3	0.33	1	0	1	0	0	0
............................................................................................TGACAGTTCTGCACGTATC...........................................................................................................................................	19	3	7	0.14	1	0	0	0	1	0
...CTCTCTAGGCTACCGGCAC....................................................................................................................................................................................................................................	19	3	16	0.13	2	0	2	0	0	0

Species	Coordinate	ID	Alignment
droSim2	3r:19100230-19100479 +	dsi_15057	TTGGAGAGATCG-----GATGTACGTGTGTACGTACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACATAGCT--GCTATGTAGGCTCATATGTGTGTCAGTGTGCCAAGT-----------------------------------------TGGGAA------CTTTCAGTGT-CAACACGTGCATAT-------------------------------------------------------------A--------------------CTATCTC----------------------------ATTCGCTCCTATTTACCTTGCTGTTTACTTACAAC----ACTTT------GTTGCTGTAATT---ACTCTGCCTTATCGGTGTGT----GTGTG--TGTGTATG------------------T------GTGT-----------TG-----TTGTTTC---CT-----GCG----------------CTCCGGTATAA---TTCGCT--CAC----------------------------------TC-TCTCG
droSec2	scaffold_0:19907427-19907674 +		TTGGAGAGATTG-----GATGTACGTGTGTACATACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACATAGCT--GCTAAGTAGGCTCATATGTGTGTCAGTGTGCCAAGT-----------------------------------------TGGGAG------CTTTCAGTGT-CAACACGTGCATAT-------------------------------------------------------------A--------------------CTATCTC----------------------------ATTCGCGCCTATTCACCTTGCTGTTTACTTACAAC----ACTTT------GTTGCTGTAATT---ACTCTGCCTTATCGGTGTGT----GTGTG--T--ATATG------------------T------GTGT-----------TG-----TTGTTTC---CT-----GCG----------------CTCCGTTATAA---TTCGCT--CGC----------------------------------TC-TCTCG
dm3	chr3R:19549410-19549645 +		TTGGAGAGATCG-----GATGTACGTGTGTACATAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGCT--GCTATGTAAGCTCATATGTGTGTCAGTGTGCCAAGT-----------------------------------------TGGGAG------CTTTCAGTGT-CAACACGTGCATAT-------------------------------------------------------------A--------------------CTATCTC----------------------------ATTCGCTCCTATTTACCTTGCTGTTTATTTACAAC----ACTTT------GTTGCTGTAATT---ACTCTGCCTTATCGGTGTGT----GTGT--------ATG------------------T------GTGT-----------TG-----TTGTTTC---CT-----GCA----------------CTCCGTTATAA---TTCGCT--CAC----------------------------------TC-TCTCG
droEre2	scaffold_4820:8494914-8495136 -		TTGGAGAGATCG-----GTTGTACTTACATGCGTACA---------------------------------------------------------------------------------------------------------------------------------------------------TATGTATGTATG--------TACATAGTT--GCTATATTGGCTCATAAGTGTGTCAGTGTGCCAAGT-----------------------------------------TGAGAG------CTTTCAGTGT-CAACACGTGCATAT-------------------------------------------------------------G--------------------CTGTCTC----------------------------CATCGCTCCTATTTACCTTGCTGTTTACTTACAAC----ACTTT------GTTGCTGTAATC---ACTCTGCCTTGTCTGTGTGT----GTGTG--A------G------------------TGTGTTGGTGT------------------------------------------------------------TATAA---T----------------------------------------------------
droYak3	3R:20455048-20455299 +		TTGGAGAGATCG-----GATGTACATGCGTACATAC-------------------------------------------------------------------------------------------------------------------------------------------------------GTATGTACATCCATACATATATAGCA--GC------------TATGTGTGTCAGTGTGCCAAGT-----------------------------------------TGAGAG------CTTTCAGTGT-CAACACGTGCATAC-------------------------------------------------------------ATAT--A--------------CTATCTC----------------------------ATTCGCTCCTATTTACCTTGCTGTTTACTTACAAC----ACTTT------GTTGCTGTAATC---ACTCTGCCTTATCAGTGTGT----GTATG--C----GTG------------------T------GTGT-----------TG-----TTGTTTC---CT-----GCA----------------CTCTGTTATAA---TTCGCTTACGC----------------------------------TC-TCCCG
droEug1	scf7180000409798:844255-844517 -		GTGGAGAGATCG-----AATGTATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCATATGTGTGTCAGTGTGCCAAGT-----------------------------------------TGAGAG------CTTTCAGTGT-CAACACGTGCATATACACATACACATA-------------------------------------------------CACATGTACACA--------CAATCAC----------------------------TTTTGATATTATTTACCTTGCTGTCGACTTACAAC----ACTTT------GTTGCTGTAATT---ACTCTGCCTTATCAGTGTGT----ATGTG--T------T------T----T----GTT------GTGT-----------TA-----TTGTTTC---TT-----CCGCGC--AATCTCT--------------------------C--TC-TGAGTTATCTTCTGCCCCCCAGCTTGTCCACTC-TCTCT
droBia1	scf7180000302075:5102192-5102412 +		GTGGAGAGATCG-----TATGCATGGG--------------------------------CATAT-----------------------------------------------------------------------------------------------------------------------------------------------GT----------------GGCGTATGTGTGTCAGTGTGCCAAGT-----------------------------------------TGAGAG------CTTTCAGTGT-CAACACGTGCATATAGA-----------------------------------------------------------CATATATGC----------------------------------------------ACACAATCTTATTTACCTTGCTGTCGACTTACAGC----ACTTT------GTTGCTGTAATT---GCGCTGGCTTATCAGTGTGT----GTATG--TTTGTGCG------------------T------GTGT-----------TT-----TTGTTTC---TT-----CCGCGC--AAGCT------------------------CT--CCC----------------------------------TC-TCCCG
droTak1	scf7180000415765:1379493-1379719 -		TG---------------------------TACATA----------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCTCATATGTGTGTCAGTGTGCCAAGT-----------------------------------------TGAGAG------CTTTCAGTGT-CAACACGTGCATTC-------------------------------------------------------------ACATATATGT----------------------------------------------ACACAGTCTTATTTACCTTGCTGTCGACTTACAAC----ACTTT------GTTGTTGCAATT---ACTCTGGCTTATCAGTGTGTCCCCGTCCC--TGTGTGCG------------------T------GTGT-----------TT-----TTGTTTC---TT-----CCGCGC--AAGCTCTCCCTCTCCGTTATCT---TTCGCC--CCC----------------------------------AC-ATGCT
droEle1	scf7180000486474:597147-597353 +		GT-GAGTGATCATTGGGGATGTATATTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATAAGTGTGTCAGTGTGCCAAGT-----------------------------------------TGAGAG------CTTTCAGTGT-CAACACGTGCACAT-------------------------------------------------------------ACAT--AC------------------------------------------------ATACAA-TTTATTTACCTTGCTGTTTGCTTACAAC----ACTTT------GTTGCTGTAATT---GCTCAGCCTTATCAGAGTGT----GCGTG--T------G------------------T------GCG------------------------CT-----CTCTC--------------------------------------------TTTTCCGTTATCTTTTGCCCCC------------AC-AAGCT
droRho1	scf7180000779893:17607-17834 +		GTGGAGAGATCAGAGAGAATATATA----------------------------------TATAT-----------------------------------------------------------------------------------------------------------------------------------------------TT----------------ACCATATGTGTGTCACTGTGCCAAGT-----------------------------------------TGAGAG------CTTTCAGTGT-CAACACGTGCATACACACATATAC-----------------------------------------------------------------------------------------------------------ATACAC-TTTATTTACCTTGTTGTTCACTTACAAC----ATTTT------GTTGCTGTAATT---GCTCTAGCTTATCAATGTGT----GCGTG--T------G------------------T----G--AG----------------------TGGG-----CTCCC--------------------------------------------TTGTCCGTTATCTTCTGCCCCACA---TGTTCTCTCTTTGCT
droFic1	scf7180000453800:1717382-1717619 +		GTGGAGAGATCGGAGAGGATAGAGA----------------------------------CA--A---------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCAAATGTGTGTCAGTGTGCCAAGT-----------------------------------------TGAGAG------CTTTCAGTGT-CAACACGTGCATAC-------------------------------------------------------------ACAC--ACTCA--CC------------T----------------------------TTTTACTCTTATTTACCTTGCTGTTCACTTACAAC----ATGTT------G-TGCTGTTATT---ACTCTGGCTTATCAGTGTGT----GCGTT--A--------------------------------GTGT-----------TT-----TTGTTTT-T-TT-----CCGCGC--AAGCTCCCCCTCTTCCTTATCACTGTCCACA--GAC----------------------------------AC-TCTCG
droKik1	scf7180000302639:3030697-3030922 -		GCCGAGAGATCG-----GGATCGGAATCGGAAGA-------------------------CA------------------------------------------------------------------------------------------------------------------------------------------ATATACAAGT-------------GGCGGAATATGTGTGTCAGTGTGCCAAGAGTGTTTTATT---------------CGCTCGCATCTCAGC-TGAGAG------CTTTCAGTGT-CAACACGTGCATACAAGTATGCACATA-------------------------------------------------CACATATGTA--CATAGTTA------CATACATGTA----CATATGTATGTATATACATATACTTATTTACCTTGCTGTTGCCTT------------------------------------------------------------------------------------------------------------------------------------------CCGCG------------------------------------CAC----------------------------------TC-TCTCT
droAna3	scaffold_13340:19984105-19984336 -		TCAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTGTGTCAGTGTGCCAAAAGTT-------------------AGTCGCAA--------TCAGAAGAG------CTTTCAGTGT-CAACACGTGCATAC-------------------------------------------------------------ACAC--ACGCA--CAGGTGCA------G----------------------------TTCTGCTTTTATTTACCTTGCTCTTGTCTCACAGC----ATGTTGTTGCTGTTGCTGTAATC---GC----GCTTATCAGTGTTTTTGTGCGTGTGTGTGTGTG------------------TGTGTTGGTG---GATTTTT-T-------TTGTGGC---TT------TGCGC--AAGCTCT----------------------CA--AAC----------------------------------TC-TCTCT
droBip1	scf7180000396413:2413887-2414110 +		GCAGAAAGATCG-----GGGGGACAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAATGTGTGTCAGTGTGCCAAAAGTC-------------------ACTCTCA---------GCAGCAGAG------CTTTCAGTGT-CAACACGTGCATAC-------------------------------------------------------------ACTC--ACGAA--CAGGTGCA------C----------------------------TTCTGGTTTTATTTACCTTGCTCTTGCCTTACAGC--C-ATGTT------GTTGCTGTAATT-------TGGCTTATCAGTGTTTTTGTGCGTG--T------G------------------T----TGGTG---GATTTTG-T-------TTGTGTC---TT------TGCGC--AA--------------------------------------------------------------------GC-TCTCA
dp5	2:3048080-3048376 +		CTACATGGATAT-----T-----------------------------------------CCTACTTTCCGAATATGTGTCAGTGTGCCAAAAGTTTTCATCATAAATCCCCCTGACAGACAGGTCTCGGCCGCGTATATTACATACACATACACACAACACAAAGATGTAAATACAAAAGTACATATGTATGTATG--------TACA-AGCTCTGAT----------------------------ACAGC-----------------------------------------TGAAAG------CTTTCAGTGT-CAGCACGTATATAC-------------------------------------------------------------A----------------------------------------------------------------T------------ATTTACTTTTAAAAC--TCTC-GGGA---GCGATGTTGTT---ATTTTGCTTT-------TGT----GCGT---------------------------------------------------TTTGTTTGTGTGTC-----CTCCT--------------------------------------------TTGTACCATATATCTCG--------------CCCTC-TCCCT
droPer2	scaffold_7:1293904-1294021 -		--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC-----------------------------------------TGAAAG------CTTTCAGTGT-CAGCACGTATATAT---------------------------------------------------------------------------------------------------------------------------------------------TTACTTTTAAAAC--TCTC-GGGA---GCGATGTTGTT---ATTTTGCTTT-------CGT----GCGT---------------------------------------------------TTTGTTTGTGTGTC-----CTCCT--------------------------------------------TTGTACCATA------------------------TA-TCTCG
droWil2	scf2_1100000004921:3608661-3608933 -		ATATAGTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTATGTGTGTCAGTGTGCCAAAAGTTTACAGTCACTCTCTCTCCCACTCTCTATAG--------TGAGAGTCACTATCTTCAGTGT-CAACACGTGCATAC-------------------------------------------------------------ATACAAACTTA--CATGTTCA------CTTACATGTA----TGTATGT-TGTGTGTGTAATAATGCATTTACTTTGTTTTTGTTTTACATC----T----------GACTCTTGA-----------ATGTTATCAGTGTTT-G--GCATG--C----TTC------TGCTTCTTCC--ACTGTTGTTT---GTTATTT-T-------TTGCTA-----------CCGCGCACAATC--------------------------T--CCC----------------------------------AC-ACCTG
droVir3	scaffold_13047:15186874-15187206 -		TGAAACCAATG----CGAATGTATGTATGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTACGTGTGTCAGCATGCCAAATGTTTATAGGC---------------CGCTTGAGTGACAGC-------TCGCGGCTCT----CT-AAACACATGTACACACACATACACACACACTCACATGCACCGACCGAAAGCTTCAGTGTCAACAC--ATGCTGTTATACAG----------T----------------TGTACTTTCGTACGTGTGTTTGTATGTATGCATGTTGACATTGTTTTTGTCTTACAAC----TCTC-ATCACTCTGGCTGTAATTTGCGCGCGCTCTTATCAATGTGGCGGCATAT--------GTG------------------T------GCGT-----------TGTTGTTTTGTCTCCTCTT------TACGC--TC--------------------------------G---------CACACCCGT--------------TTCTC-TCTCG
droMoj3	scaffold_6540:18662187-18662307 -		T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGACATTGTTGTTGCCTTACAAC--TGACAGT------ACTCTCGTAATTTGCACGCACTGTTATCAGTATGTGTGTATGTGTGTGT--GTGTGTGCTTGAGTA------T----G--CA-TG----------------------------------T---------------------------G---TGCGCG--CGC----------------------------------TT-TTTGT
droGri2	scaffold_14830:4798567-4798934 +		TGAAAGCAATGC----GAATATGTACACACACATACAAACATACATACACACACATAGGCGCAT--------------------------------------------------------------------------------------------------------------------------------------------------------------ACCTTCGCATGTGTGTCAGCATGCCAGAGCT-TATAGGC---------------TATTTGACTGACTGG-------TCTCGGTTCT----CTCATACACATGCATACACATA-----ACACATTC--ATGCACCGAC-AAAAGCTTCAGTGTCAGCACATATACTTTCATATGT----------C----------------TATGCGTGTATATGTGTGTGTGTATGCTTGCCTGTTCAGTTTGTTTTCGTCTTACAAC----TCTC-AGCACTTTTGTTGTAATTCGCACGCTCTCTTATCAATAGCTGTGCGTGTGCATGT--GCATGTGTGTGTGTG------T----G--TG-TG--TGTTGTT-------TTGTTTT---TT-----GT-----------------------------------TT--CGC----------------------------------TC-TCTCA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TTGGAGAGATCG-----GATGTACGTGTGTACGTACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACATAGCT--GCTATGTAGGCTCATATGTGTGTCAGTGTGCCAAGT-----------------------------------------TGGGAA------CTTTCAGTGT-CAACACGTGCATAT-------------------------------------------------------------A--------------------CTATCTC----------------------------ATTCGCTCCTATTTACCTTGCTGTTTACTTACAAC----ACTTT------GTTGCTGTAATT---ACTCTGCCTTATCGGTGTGT----GTGTG--TGTGTATG------------------T------GTGT-----------TG-----TTGTTTC---CT-----GCG----------------CTCCGGTATAA---TTCGCT--CAC----------------------------------TC-TCTCG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT----GTGTG--TGTGTATG------------------T------GTGT-----------TG-----.......................................................................................................	23	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT----GTGTG--TGTGTATG------------------T------GTGT-----------TG-----A......................................................................................................	24	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

TTGGAGAGATTG-----GATGTACGTGTGTACATACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAACATAGCT--GCTAAGTAGGCTCATATGTGTGTCAGTGTGCCAAGT-----------------------------------------TGGGAG------CTTTCAGTGT-CAACACGTGCATAT-------------------------------------------------------------A--------------------CTATCTC----------------------------ATTCGCGCCTATTCACCTTGCTGTTTACTTACAAC----ACTTT------GTTGCTGTAATT---ACTCTGCCTTATCGGTGTGT----GTGTG--T--ATATG------------------T------GTGT-----------TG-----TTGTTTC---CT-----GCG----------------CTCCGTTATAA---TTCGCT--CGC----------------------------------TC-TCTCG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............................................................................................................................................................................................................................................TCAGTGTGCCAAGT-----------------------------------------TGGGAG------C...........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATT---ACTCTGCCTTATCGGT.............................................................................................................................................................................	21	1	1.00	1	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCTTATCGGTGTGT----GTGTG--T--...........................................................................................................................................................	23	1	1.00	1	0	1	0	0
....................................................................................................................................................................................................................................ATATGTGTGTCAGTGTGCCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................GCTCATATGTGTGTCAGTGTGCCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1
.....................................................................................................................................................................................................................................TATGTGTGTCAGTGTGCCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................CATAT-------------------------------------------------------------A--------------------CTATCTC----------------------------ATTCGCGC......................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0

dm3

TTGGAGAGATCG-----GATGTACGTGTGTACATAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGCT--GCTATGTAAGCTCATATGTGTGTCAGTGTGCCAAGT-----------------------------------------TGGGAG------CTTTCAGTGT-CAACACGTGCATAT-------------------------------------------------------------A--------------------CTATCTC----------------------------ATTCGCTCCTATTTACCTTGCTGTTTATTTACAAC----ACTTT------GTTGCTGTAATT---ACTCTGCCTTATCGGTGTGT----GTGT--------ATG------------------T------GTGT-----------TG-----TTGTTTC---CT-----GCA----------------CTCCGTTATAA---TTCGCT--CAC----------------------------------TC-TCTCG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
....................................................................................................................................................................................................................................................GCCAAGT-----------------------------------------TGGGAG------CTTTC.......................................................................................................................................................................................................................................................................................................................................................................................................	18	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................TCAGTGT-CAACACGTGCA......................................................................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................GTCAGTGTGCCAAGT-----------------------------------------TGGGAG------............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCGTTATAA---TTCGCT--CAC----------------------------------TC-TCTC.	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TGTCAGTGTGCCAAGT-----------------------------------------TGGGA...................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT--------ATG------------------T------GTGT-----------TG-----TTGTTT.................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TGGAGAGATCG-----GATGTACGTGTGTACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCTTATCGGTGTGT----GTGT--------ATG------------------T------GT...........................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCCTTATCGGTGTGT----GTGT--------ATG------------------....................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................ATGTAAGCTCATATGTGTGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................GT-----------------------------------------TGGGAG------CTTTCAGTGT-.................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...GAGAGATCG-----GATGTACGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................AGTGTGCCAAGT-----------------------------------------TGGGAG------CTT.........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................GTGTGCCAAGT-----------------------------------------TGGGAG------C...........................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGT----GTGT--------ATG------------------T------GTGT-----------TG-----.......................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTGT----GTGT--------ATG------------------T------GTG..........................................................................................................................	18	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGT----GTGT--------ATG------------------T------GTGT-----------T.............................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TTGGAGAGATCG-----GTTGTACTTACATGCGTACA---------------------------------------------------------------------------------------------------------------------------------------------------TATGTATGTATG--------TACATAGTT--GCTATATTGGCTCATAAGTGTGTCAGTGTGCCAAGT-----------------------------------------TGAGAG------CTTTCAGTGT-CAACACGTGCATAT-------------------------------------------------------------G--------------------CTGTCTC----------------------------CATCGCTCCTATTTACCTTGCTGTTTACTTACAAC----ACTTT------GTTGCTGTAATC---ACTCTGCCTTGTCTGTGTGT----GTGTG--A------G------------------TGTGTTGGTGT------------------------------------------------------------TATAA---T----------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTGTGT----GTGTG--A------G------------------TGT.................................................................................................................................	20	4	3.25	13	1	0	0	0	4	8	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTGTGT----GTGTG--A------G------------------TG..................................................................................................................................	19	6	2.33	14	3	0	1	0	2	8	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTGTGT----GTGTG--A------G------------------TGTG................................................................................................................................	21	3	2.00	6	2	0	0	0	2	2	0
........................................................................................................................................................................................................................................GTGTGTCAGTGTGCCAAGT-----------------------------------------TGAGA...................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTGTGT----GTGTG--A------G------------------T...................................................................................................................................	18	7	0.29	2	0	0	0	1	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTGTGT----GTGTG--A------G------------------TGTGT...............................................................................................................................	21	7	0.14	1	0	0	0	0	1	0	0

droYak3

TTGGAGAGATCG-----GATGTACATGCGTACATAC-------------------------------------------------------------------------------------------------------------------------------------------------------GTATGTACATCCATACATATATAGCA--GC------------TATGTGTGTCAGTGTGCCAAGT-----------------------------------------TGAGAG------CTTTCAGTGT-CAACACGTGCATAC-------------------------------------------------------------ATAT--A--------------CTATCTC----------------------------ATTCGCTCCTATTTACCTTGCTGTTTACTTACAAC----ACTTT------GTTGCTGTAATC---ACTCTGCCTTATCAGTGTGT----GTATG--C----GTG------------------T------GTGT-----------TG-----TTGTTTC---CT-----GCA----------------CTCTGTTATAA---TTCGCTTACGC----------------------------------TC-TCCCG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGT----GTATG--C----GTG------------------T------GTGT-----------..............................................................................................................	18	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

GTGGAGAGATCG-----AATGTATAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCATATGTGTGTCAGTGTGCCAAGT-----------------------------------------TGAGAG------CTTTCAGTGT-CAACACGTGCATATACACATACACATA-------------------------------------------------CACATGTACACA--------CAATCAC----------------------------TTTTGATATTATTTACCTTGCTGTCGACTTACAAC----ACTTT------GTTGCTGTAATT---ACTCTGCCTTATCAGTGTGT----ATGTG--T------T------T----T----GTT------GTGT-----------TA-----TTGTTTC---TT-----CCGCGC--AATCTCT--------------------------C--TC-TGAGTTATCTTCTGCCCCCCAGCTTGTCCACTC-TCTCT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GTGGAGAGATCG-----TATGCATGGG--------------------------------CATAT-----------------------------------------------------------------------------------------------------------------------------------------------GT----------------GGCGTATGTGTGTCAGTGTGCCAAGT-----------------------------------------TGAGAG------CTTTCAGTGT-CAACACGTGCATATAGA-----------------------------------------------------------CATATATGC----------------------------------------------ACACAATCTTATTTACCTTGCTGTCGACTTACAGC----ACTTT------GTTGCTGTAATT---GCGCTGGCTTATCAGTGTGT----GTATG--TTTGTGCG------------------T------GTGT-----------TT-----TTGTTTC---TT-----CCGCGC--AAGCT------------------------CT--CCC----------------------------------TC-TCCCG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TG---------------------------TACATA----------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCTCATATGTGTGTCAGTGTGCCAAGT-----------------------------------------TGAGAG------CTTTCAGTGT-CAACACGTGCATTC-------------------------------------------------------------ACATATATGT----------------------------------------------ACACAGTCTTATTTACCTTGCTGTCGACTTACAAC----ACTTT------GTTGTTGCAATT---ACTCTGGCTTATCAGTGTGTCCCCGTCCC--TGTGTGCG------------------T------GTGT-----------TT-----TTGTTTC---TT-----CCGCGC--AAGCTCTCCCTCTCCGTTATCT---TTCGCC--CCC----------------------------------AC-ATGCT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GT-GAGTGATCATTGGGGATGTATATTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATAAGTGTGTCAGTGTGCCAAGT-----------------------------------------TGAGAG------CTTTCAGTGT-CAACACGTGCACAT-------------------------------------------------------------ACAT--AC------------------------------------------------ATACAA-TTTATTTACCTTGCTGTTTGCTTACAAC----ACTTT------GTTGCTGTAATT---GCTCAGCCTTATCAGAGTGT----GCGTG--T------G------------------T------GCG------------------------CT-----CTCTC--------------------------------------------TTTTCCGTTATCTTTTGCCCCC------------AC-AAGCT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GTGGAGAGATCAGAGAGAATATATA----------------------------------TATAT-----------------------------------------------------------------------------------------------------------------------------------------------TT----------------ACCATATGTGTGTCACTGTGCCAAGT-----------------------------------------TGAGAG------CTTTCAGTGT-CAACACGTGCATACACACATATAC-----------------------------------------------------------------------------------------------------------ATACAC-TTTATTTACCTTGTTGTTCACTTACAAC----ATTTT------GTTGCTGTAATT---GCTCTAGCTTATCAATGTGT----GCGTG--T------G------------------T----G--AG----------------------TGGG-----CTCCC--------------------------------------------TTGTCCGTTATCTTCTGCCCCACA---TGTTCTCTCTTTGCT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GTGGAGAGATCGGAGAGGATAGAGA----------------------------------CA--A---------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCAAATGTGTGTCAGTGTGCCAAGT-----------------------------------------TGAGAG------CTTTCAGTGT-CAACACGTGCATAC-------------------------------------------------------------ACAC--ACTCA--CC------------T----------------------------TTTTACTCTTATTTACCTTGCTGTTCACTTACAAC----ATGTT------G-TGCTGTTATT---ACTCTGGCTTATCAGTGTGT----GCGTT--A--------------------------------GTGT-----------TT-----TTGTTTT-T-TT-----CCGCGC--AAGCTCCCCCTCTTCCTTATCACTGTCCACA--GAC----------------------------------AC-TCTCG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCCGAGAGATCG-----GGATCGGAATCGGAAGA-------------------------CA------------------------------------------------------------------------------------------------------------------------------------------ATATACAAGT-------------GGCGGAATATGTGTGTCAGTGTGCCAAGAGTGTTTTATT---------------CGCTCGCATCTCAGC-TGAGAG------CTTTCAGTGT-CAACACGTGCATACAAGTATGCACATA-------------------------------------------------CACATATGTA--CATAGTTA------CATACATGTA----CATATGTATGTATATACATATACTTATTTACCTTGCTGTTGCCTT------------------------------------------------------------------------------------------------------------------------------------------CCGCG------------------------------------CAC----------------------------------TC-TCTCT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TCAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTGTGTCAGTGTGCCAAAAGTT-------------------AGTCGCAA--------TCAGAAGAG------CTTTCAGTGT-CAACACGTGCATAC-------------------------------------------------------------ACAC--ACGCA--CAGGTGCA------G----------------------------TTCTGCTTTTATTTACCTTGCTCTTGTCTCACAGC----ATGTTGTTGCTGTTGCTGTAATC---GC----GCTTATCAGTGTTTTTGTGCGTGTGTGTGTGTG------------------TGTGTTGGTG---GATTTTT-T-------TTGTGGC---TT------TGCGC--AAGCTCT----------------------CA--AAC----------------------------------TC-TCTCT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTGCTGTAATC---GC----GCTT...................................................................................................................................................................................	21	1	2.00	2	1	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATCAGTGTTTTTGTGCGT.................................................................................................................................................................	21	1	2.00	2	0	0	0	0	2	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGTGTTTTTGTGCGTGTG..............................................................................................................................................................	21	1	2.00	2	0	0	0	0	1	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................CA------G----------------------------TTCTGCTTTTATTTACCT............................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................CGCA--CAGGTGCA------G----------------------------TTCTGCT.......................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................CAGTGTGCCAAAAGTT-------------------AGTCG......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGTTTTTGTGCGTGTGTG............................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGTTTTTGTGCGTGTG..............................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTGTTTTTGTGCGTGTGT.............................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................GAAGAG------CTTTCAGTGT-CAACA............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................AAGAG------CTTTCAGTGT-CAACA............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTTGGTG---GATTTTT-T-------TTGT...................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................................................................CGCA--CAGGTGCA------G----------------------------TTCTGCTT......................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................CAGAAGAG------CTTTCAGTGT-C................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................T-------------------AGTCGCAA--------TCAGAAGAG------CTT.........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................................................................................TT-------------------AGTCGCAA--------TCAGAAGAG------CTT.........................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCTTGTCTCACAGC----ATG....................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTG------------------TGTGTTGGTG---GAT....................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................CAA--------TCAGAAGAG------CTTTCAGTGT-CAACAC...........................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT------TGCGC--AAGCTCT----------------------CA--AAC----------------------------------TC-.....	21	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................AGTT-------------------AGTCGCAA--------TCAGAAGA...................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGTTGCTGTAATC---GC----GCTT...................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................AA--------TCAGAAGAG------CTTTCAGTG...................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGC--AAGCTCT----------------------CA--AAC----------------------------------TC-TC...	21	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................TT-------------------AGTCGCAA--------TCAGAAGAG------............................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGTTTTTGTGCGTGTGT.............................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
..AGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTGTGTCAGTGTGCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGCGTGTGTGTGTGT.......................................................................................................................................................	19	2	0.50	1	0	0	0	0	1	0
......................................................................................................................................................................................................................................ATGTGTGTCAGTGTGCCAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	3	0.33	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTGTGTGTGTG------------------TGTGTTG.............................................................................................................................	21	5	0.20	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTG------------------TGTGTTGGTG---G......................................................................................................................	19	5	0.20	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTGTG------------------TGTGTTGGTG---.......................................................................................................................	22	20	0.15	3	0	0	0	0	0	3
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGTGTG------------------TGTGTTGGTG---.......................................................................................................................	21	20	0.05	1	1	0	0	0	0	0

droBip1

GCAGAAAGATCG-----GGGGGACAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAATGTGTGTCAGTGTGCCAAAAGTC-------------------ACTCTCA---------GCAGCAGAG------CTTTCAGTGT-CAACACGTGCATAC-------------------------------------------------------------ACTC--ACGAA--CAGGTGCA------C----------------------------TTCTGGTTTTATTTACCTTGCTCTTGCCTTACAGC--C-ATGTT------GTTGCTGTAATT-------TGGCTTATCAGTGTTTTTGTGCGTG--T------G------------------T----TGGTG---GATTTTG-T-------TTGTGTC---TT------TGCGC--AA--------------------------------------------------------------------GC-TCTCA	Size	Hit Count	Total Norm	Total
No Reads

dp5

CTACATGGATAT-----T-----------------------------------------CCTACTTTCCGAATATGTGTCAGTGTGCCAAAAGTTTTCATCATAAATCCCCCTGACAGACAGGTCTCGGCCGCGTATATTACATACACATACACACAACACAAAGATGTAAATACAAAAGTACATATGTATGTATG--------TACA-AGCTCTGAT----------------------------ACAGC-----------------------------------------TGAAAG------CTTTCAGTGT-CAGCACGTATATAC-------------------------------------------------------------A----------------------------------------------------------------T------------ATTTACTTTTAAAAC--TCTC-GGGA---GCGATGTTGTT---ATTTTGCTTT-------TGT----GCGT---------------------------------------------------TTTGTTTGTGTGTC-----CTCCT--------------------------------------------TTGTACCATATATCTCG--------------CCCTC-TCCCT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.TACATGGATAT-----T-----------------------------------------CCTACTTTCCGAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	16.00	16	0	10	0	0	0	0	0	5	1	0
.TACATGGATAT-----T-----------------------------------------CCTACTTTCCGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	8.00	8	0	8	0	0	0	0	0	0	0	0
.TACATGGATAT-----T-----------------------------------------CCTACTTTCCGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	4.00	4	0	1	0	0	0	0	0	3	0	0
.TACATGGATAT-----T-----------------------------------------CCTACTTTCCGAATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	3.00	3	0	2	0	0	0	0	0	0	1	0
..ACATGGATAT-----T-----------------------------------------CCTACTTTCCGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	1	1	0	0	0	0	0	0	0
..........................................................................................................TCCCCCTGACAGACAGGTCTCGGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTTTAAAAC--TCTC-GGGA---GCGA.......................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	2	0
...CATGGATAT-----T-----------------------------------------CCTACTTTCCGAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................TCCCCCTGACAGACAGGTCTCGGCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TAC-------------------------------------------------------------A----------------------------------------------------------------T------------ATTTACTTTTAAAAC--TCTC-GGGA---G..........................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	1	0	0
.TACATGGATAT-----T-----------------------------------------CCTACTTTCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................T-----------------------------------------CCTACTTTCCGAATATGTGTCAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................TGTATGTATG--------TACA-AGCTCTGAT----------------------------ACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..ACATGGATAT-----T-----------------------------------------CCTACTTTCCGAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................TGACAGACAGGTCTCGGCCGCGTATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0
........................................................................................................................................................................................TATGTATGTATG--------TACA-AGCTCTGAA----------------------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0
......................................................................................................TAAATCCCCCTGACAGACAGGTCTCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................TGTCAGTGTGCCAAAAGTTTTCATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TGTATG--------TACA-AGCTCTGAT----------------------------ACAGC-----------------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................TAAATCCCCCTGACAGACAGGTCTCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTT---ATTTTGCTTT-------TGT----GCGT---------------------------------------------------TT............................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...CATGGATAT-----T-----------------------------------------CCTACTTTCCGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................TACA-AGCTCTGAT----------------------------ACAGC-----------------------------------------TGAAAG------CTT.........................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTTTAAAAC--TCTC-GGGA---GC.........................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTC-----CTCCT--------------------------------------------TTGTACCATAT...............................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................TGTGTCAGTGTGCCAAAAGTTTTCATCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................TACATACACATACACACAACACAAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................CCGCGTATATTACATACACATACACACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.........TAT-----T-----------------------------------------CCTACTTTCCGAATATGTGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................CAGTGT-CAGCACGTATATAC-------------------------------------------------------------A----------------------------------------------------------------T------------ATT.....................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----GCGT---------------------------------------------------TTTGTTTGTGTGTC-----CTCCT--------------------------------------------T.........................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGT---------------------------------------------------TTTGTTTGTGTGTC-----C..........................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTTTAAAAC--TCTC-GGGA---GCGATGT....................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0
....................................................................................TGCCAAAAGTTTTCATCATAAATCCCCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC-----------------------------------------TGAAAG------CTTTCAGTGT-CAGCACGTATATAT---------------------------------------------------------------------------------------------------------------------------------------------TTACTTTTAAAAC--TCTC-GGGA---GCGATGTTGTT---ATTTTGCTTT-------CGT----GCGT---------------------------------------------------TTTGTTTGTGTGTC-----CTCCT--------------------------------------------TTGTACCATA------------------------TA-TCTCG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
....................................................................................................................................................................................................................................................................................................TGAAAG------CTTTCAGTGT-CAGCACGTATA......................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	2
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTC-GGGA---GCGATGTTGTT---ATTTTG.......................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----GCGT---------------------------------------------------TTTGTTTGTGTGTC-----CTCCT--------------------------------------------TTG.......................................	27	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTT-------CGT----GCGT---------------------------------------------------TTTGTTTGTGTGT.................................................................................................	26	2	0.50	1	0	0	0	0	0	1

droWil2

ATATAGTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTATGTGTGTCAGTGTGCCAAAAGTTTACAGTCACTCTCTCTCCCACTCTCTATAG--------TGAGAGTCACTATCTTCAGTGT-CAACACGTGCATAC-------------------------------------------------------------ATACAAACTTA--CATGTTCA------CTTACATGTA----TGTATGT-TGTGTGTGTAATAATGCATTTACTTTGTTTTTGTTTTACATC----T----------GACTCTTGA-----------ATGTTATCAGTGTTT-G--GCATG--C----TTC------TGCTTCTTCC--ACTGTTGTTT---GTTATTT-T-------TTGCTA-----------CCGCGCACAATC--------------------------T--CCC----------------------------------AC-ACCTG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droVir3

TGAAACCAATG----CGAATGTATGTATGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTACGTGTGTCAGCATGCCAAATGTTTATAGGC---------------CGCTTGAGTGACAGC-------TCGCGGCTCT----CT-AAACACATGTACACACACATACACACACACTCACATGCACCGACCGAAAGCTTCAGTGTCAACAC--ATGCTGTTATACAG----------T----------------TGTACTTTCGTACGTGTGTTTGTATGTATGCATGTTGACATTGTTTTTGTCTTACAAC----TCTC-ATCACTCTGGCTGTAATTTGCGCGCGCTCTTATCAATGTGGCGGCATAT--------GTG------------------T------GCGT-----------TGTTGTTTTGTCTCCTCTT------TACGC--TC--------------------------------G---------CACACCCGT--------------TTCTC-TCTCG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.......................................................................................................................................................................................................................................CGTGTGTCAGCATGCCAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TTATAGGC---------------CGCTTGAGTGACAGC-------T.................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................CACACATACACACACACTCAC...............................................................................................................................................................................................................................................................................................................................................................	21	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGACATTGTTGTTGCCTTACAAC--TGACAGT------ACTCTCGTAATTTGCACGCACTGTTATCAGTATGTGTGTATGTGTGTGT--GTGTGTGCTTGAGTA------T----G--CA-TG----------------------------------T---------------------------G---TGCGCG--CGC----------------------------------TT-TTTGT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

TGAAAGCAATGC----GAATATGTACACACACATACAAACATACATACACACACATAGGCGCAT--------------------------------------------------------------------------------------------------------------------------------------------------------------ACCTTCGCATGTGTGTCAGCATGCCAGAGCT-TATAGGC---------------TATTTGACTGACTGG-------TCTCGGTTCT----CTCATACACATGCATACACATA-----ACACATTC--ATGCACCGAC-AAAAGCTTCAGTGTCAGCACATATACTTTCATATGT----------C----------------TATGCGTGTATATGTGTGTGTGTATGCTTGCCTGTTCAGTTTGTTTTCGTCTTACAAC----TCTC-AGCACTTTTGTTGTAATTCGCACGCTCTCTTATCAATAGCTGTGCGTGTGCATGT--GCATGTGTGTGTGTG------T----G--TG-TG--TGTTGTT-------TTGTTTT---TT-----GT-----------------------------------TT--CGC----------------------------------TC-TCTCA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_15057

3r:19100280-19100429 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads