ID:

dsi_15047

 Coordinate:

x:15423044-15423313 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-47.2 -47.0 -47.0

Flybase annnotation

CDS [x_15423314_15423325_-]; five_prime_UTR [x_15423326_15423389_-]; exon [x_15423314_15423389_-]; exon [x_15422471_15423043_-]; CDS [x_15422471_15423043_-]; intron [x_15423044_15423313_-]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GAAATTATCCACAGAATCTCCATAGAACCTCCCTCAAAATGTATCCCTTCGTAAGTTTTGAATGCACATCCTGTAGATTTTAGTTGTAAAAGCATCAATCATTGCATAAATCAGTGCCTTGGTTCTTAAATATCATAACATACTCACAATATATTACTTTTTGGTTATAAAACTATAATAATTTATGCGGGTGAGTTCATTGAATACTTTTCGTTTAGTCTGATTCATTTTTCTAAGAGTTAGATGTCATTTGTGTGAGCCCTGTGTTTAATCCAGCTCCATGGAGTCAACTTGAATTGTACATTTTCTGACTTTTATAGGGTTCTGGAATGCCATCGCACCCCCCTACCTCCACTAACCACCACGAGCC
**************************************************..(((((..(((((.(((((..((.(((((((((((...((((((.(((((..((((......))))..))))).................((((((..((((........(((((....)))))........))))...))))))....((((.....))))....(((((((((..........))))))))).((((....)))).....))))))....)))))....)))))).))..))..))).)))))...)))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
...............ATCTCCGTAGAACCTCCA................................................................................................................................................................................................................................................................................................................................................. 18 2 1 2.00 2 2 0 0 0 0 0 0 0
........CCACAGAATCTCCATAGAACCTC................................................................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0
.........CACAGAATCTCCATAGAACCTCCCT................................................................................................................................................................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 1 0 0 0 0
..............AATCTCCGTAGAACCTCCA................................................................................................................................................................................................................................................................................................................................................. 19 2 1 1.00 1 0 1 0 0 0 0 0 0
.........CACAGAATCTCCATAGAACCT.................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................TTGTGTGAGCCCTGTG........................................................................................................ 16 0 1 1.00 1 0 0 1 0 0 0 0 0
.............................................................................................................................................................TTTTTGGTTATCTCACTATAAT............................................................................................................................................................................................... 22 3 2 0.50 1 0 0 0 0 0 0 1 0
.......TCCAGAGATTCTCCATAGA........................................................................................................................................................................................................................................................................................................................................................ 19 2 3 0.33 1 0 0 0 0 0 1 0 0
...............ATCTCGATAGAACCTCCA................................................................................................................................................................................................................................................................................................................................................. 18 2 3 0.33 1 0 0 0 0 1 0 0 0
................................................................................................................................................................................AATAGTGTATGCGGCTGAGT.............................................................................................................................................................................. 20 3 5 0.20 1 0 0 0 0 1 0 0 0
..............AATCTCTGTAGAACCTCC.................................................................................................................................................................................................................................................................................................................................................. 18 2 6 0.17 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TCTAGGCTGAGTCATTTTTCT........................................................................................................................................ 21 3 6 0.17 1 0 0 0 0 0 1 0 0
.............GAATCTCGGTAGAACCTCCA................................................................................................................................................................................................................................................................................................................................................. 20 3 6 0.17 1 0 0 0 0 1 0 0 0
..............AATCTCTGTAGAACCTCCA................................................................................................................................................................................................................................................................................................................................................. 19 3 19 0.16 3 0 3 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................CAACTTGGATTGTTCATT................................................................. 18 2 7 0.14 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................TTGTGTGAGCCTTGT......................................................................................................... 15 1 14 0.14 2 0 0 0 0 2 0 0 0
...........................................................................GATTTTAGCTGTAAAA....................................................................................................................................................................................................................................................................................... 16 1 17 0.12 2 0 0 1 0 1 0 0 0
..............AATCTCCGTGGAACCTCCA................................................................................................................................................................................................................................................................................................................................................. 19 3 19 0.11 2 0 2 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................CAACTTGGATTGTTCATTC................................................................ 19 3 20 0.10 2 0 2 0 0 0 0 0 0
........................................................................................................CATAAATGAGTACCCTGGT....................................................................................................................................................................................................................................................... 19 3 11 0.09 1 0 0 0 0 0 0 0 1
.....................................................................................................................................................................................................................................................................................................................................TGGAATGCCGTCGCCCC............................ 17 2 12 0.08 1 0 0 0 0 0 1 0 0
..............AATCTCGCTAGAACCTCCA................................................................................................................................................................................................................................................................................................................................................. 19 3 14 0.07 1 0 0 0 0 1 0 0 0
....................................................................TCCTTTTGATTTTAGCTGTA.......................................................................................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 1 0 0 0 0 0

Anti-sense strand reads

CTTTAATAGGTGTCTTAGAGGTATCTTGGAGGGAGTTTTACATAGGGAAGCATTCAAAACTTACGTGTAGGACATCTAAAATCAACATTTTCGTAGTTAGTAACGTATTTAGTCACGGAACCAAGAATTTATAGTATTGTATGAGTGTTATATAATGAAAAACCAATATTTTGATATTATTAAATACGCCCACTCAAGTAACTTATGAAAAGCAAATCAGACTAAGTAAAAAGATTCTCAATCTACAGTAAACACACTCGGGACACAAATTAGGTCGAGGTACCTCAGTTGAACTTAACATGTAAAAGACTGAAAATATCCCAAGACCTTACGGTAGCGTGGGGGGATGGAGGTGATTGGTGGTGCTCGG
**************************************************..(((((..(((((.(((((..((.(((((((((((...((((((.(((((..((((......))))..))))).................((((((..((((........(((((....)))))........))))...))))))....((((.....))))....(((((((((..........))))))))).((((....)))).....))))))....)))))....)))))).))..))..))).)))))...)))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
.................GTGGTATCTTGGATGGAG............................................................................................................................................................................................................................................................................................................................................... 18 2 1 1.00 1 0 0 1 0 0 0
.............................................................................................................................................................................................................................................................................CTAGGTCGAAGTACCTCAGCT................................................................................ 21 3 2 1.00 2 0 2 0 0 0 0
..........................................................................................TCGGACTTAGTAACGTATTTA................................................................................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................TTATTAAATACGCCCACTCAAGTAACTTA..................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................TGATTGTATTGTATGAGTG............................................................................................................................................................................................................................... 19 2 2 0.50 1 0 0 1 0 0 0
....................................................................................................................................................................................................................................................................................GAAGTACCTCAGTTCAAC............................................................................ 18 2 3 0.33 1 0 0 0 1 0 0
........................................................................................TTTCGCGGTTAGTAACGTAC...................................................................................................................................................................................................................................................................... 20 3 9 0.22 2 0 2 0 0 0 0
.................GAGGTCTCTTTGGGGGAGTT............................................................................................................................................................................................................................................................................................................................................. 20 3 5 0.20 1 0 0 0 0 1 0
................................................................................................................................................................................................................................................................................GGTCGAAGTACCTCAGCT................................................................................ 18 2 6 0.17 1 0 1 0 0 0 0
....................................................................................................................................................................................................................................................................................GAAGTACCTCAGCTCAACTT.......................................................................... 20 3 6 0.17 1 0 0 0 1 0 0
................................................................................TTCAAGAATTTCGTAGTTAGT............................................................................................................................................................................................................................................................................. 21 3 9 0.11 1 0 1 0 0 0 0
.......................................................................................ATTTCGCGGTTAGTAACGTA....................................................................................................................................................................................................................................................................... 20 3 10 0.10 1 0 0 0 0 0 1
...............................................................................................................................................................................................................................................................................................................................................AGCATGGGCGGAAGGAGGT................ 19 3 15 0.07 1 0 0 0 1 0 0
...............................................................................................................................................................................................................................................................................................................................................................GGAGATTCGTGTTGCTCGG 19 3 15 0.07 1 0 0 1 0 0 0
...............................................................................................................................................................................................................................................................................AGGTCGAAGTATCTCAGCT................................................................................ 19 3 19 0.05 1 0 1 0 0 0 0
...............................................................................................................................................................................................................................................................................AGGTCGAAGTATCTCAG.................................................................................. 17 2 20 0.05 1 0 1 0 0 0 0
..TTAGTAGGTCTCTTAGA............................................................................................................................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:15422994-15423363 - dsi_15047 GAAATTA-TCCACAGAATCTCCATAGAACCTCCC-TCAAAATGTATCCCTTCGTAAGTTTTGAATGCACAT---CCTGTAGAT---T---------TTAGTTG-TAAAAGCATCAATCATTG--CATAAATCAGTGCCT-TGGT---TCTTAAATATCATAACATACTCACAATAT----AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTTTTTGGT-TATAAA---ACTATAATAATTT----------------ATGCGGGTGAGTTCATTGAATACTTTTCGTT--T--AGTCTGATT-CATTTTTCTAA------------------------GAGTTAGATG------------T-------CA-------------TTTGTGTG--AGCCCTGTGTTTAATCCAGCTCCATGGAGTCAACTTGAATTGTACATT-TTCTGACTTTTATAGGGTT------------CTGGAATGCC------ATCGCACCCCCCTACCTCCACTAAC------CACCACGAGCC
droSec2 scaffold_17:133769-133949 - GAAATTA-TCCACAGAATCTCCATAGAACCTCCC-TCAAAATGTATCCCTTCGTAAGTTTTGAGTCCACAT---CCTGTAGAT---T---------TTAGTTG-TAAAAGCATCAATCATAA-------------------------------ATATCATAACATATTCACAATAT----AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTTTTTGGTGGATAAA---ACTATAATAATTT----------------ATGCGGGTGAGTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT----------GAATA
dm3 chrX:16313754-16314132 - GAAATTA-TCCACAGAATCTCCATAGAACCTCCC-TCAAAATGTATCCCTTCGTAAGTTTTGAATGCACAT---CCTGTAGAT---T---------TTAGTTA-TAAAAGTATCAGC--------ATTAATAAGTGCCT-TGGT---TCTTAAATATCATAACATATTCACAATAT----ATTTTAT--------------AA--AT----------------------------------------AAG------------TTTGGTATA-------------------------------------------------------------------------------------------------------------------------------ACA---TATTTTTTTGGGTATAAA---ACTATAATAATTT----------------ATTCGGGTGAGTTC----------TTTCGTT--T--AGTCTGATT-CATTTTTCTAA------------------------GAGATAGATG------------T-------CA-------------TTCTTGTG--AGCTCTGTGTTTAATTCAGCGCCATGGAGTCAACTTGAATTGTACATT-TTCTGACTTTTATAGGGTT------------CTGGAATGCC------ATCGCACCCCCCTACCTCCACTAAC------CACCACGAGCC
droEre2 scaffold_4690:10783845-10784227 + GAAATTA-TCCACAGAA------TAGAATCTCCC-TCAAAATGTATCCCTTCGTAAGTTTTGAATGCACAT---CCTGTAGAT---T---------TTAGTTA-TAAAAGCATCACCCATTA--TGTTAAT--GTGCTT-TTTT---TATT--ATTTCATTATATATTCACCATAC----TTTTTAT--------------AA--AC----------------------------------------AACT-----------TTTTGTATA-------------------------------------------------------------------------------------------------------------------------------ACA---TACTTTTTG--GTATAAA---ATTGTAATAATTT----------------TTTCGGGTGAGATCGATTAACACATTTGGTT--C--AGTCTGATC-CATTTTTCTAA------------------------GCGATAGATG------------C-------CA-------------TTTGTGTG--AGCTCCGTGTTTA-ATCAGCTCCATGGAGTCATCTTGAATTGTACATT-TTCTGACTTTTATAGGGTT------------CTGGAATGCC------ATCGCACCCCCCTACCTCTACTAAC------CACCACGAGCC
droYak3 X:10433056-10433428 - GAAATTA-TCCACAGAA------TAGAATCTCCCATCAAAATGTATCCCTTCGTAAGTTTTGAAA-CACAT---CCTGTAGAT---T---------TTAGTTA-TGAAAGCAACACCCATAA--TATTAATAAGTGCTTCTTTT---TATTTAATATCATATTATATTCACCATAT----ATTTTAT--------------AA--A------------------------------------------------------AATTTTGTTTA-------------------------------------------------------------------------------------------------------------------------------ACA---TCCCTTTTG--TTACAAA---ATTGTAATGATTA----------------TTTTGCATGAGTTCG------------CTTT--T--AGTCTGATT-CATTTTTCTTG------------------------GCGATAGATG------------T-------CA-------------TTTGTGTG--ACTTCTGTGTTTA-AACAGCTCCATGGAGGCAACTTGAAATGTACATT-TTCTGACTTTTGTAGGGTT------------CTGGAATGCC------ATCGCACCCCCCTACCTCCACTAAC------CACCACGAGCC
droEug1 scf7180000409008:1303726-1304078 + GAAACTC-CCCACAGAA------TAGAATCTCCC-TCATAATGTATCCCTTCGTAAGTTTTCAATTTT-TT---CCCTTAGAT---T---------TTAGTTT-CTAAAGCATCAATCATCA--TTTTAAACAATGTTTT-AGT---TCTCAAA---------------------------------------------------ATTA------ATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAGTATACTGATTTTAGTTTGAAATATTAATTTTAATATTTTATATATTTATACTTTTTTCTGGGTGAATA---TTCAAA-----------A--ATTGTGCTT-AATTTTTCTTT-----ACCT-AC----------------------------------T-------CT-------------TTATCATG--AGCTCTGTAAAAC-CTAAGCT---------CAACTTGAATTGTAAATT-TTTTGACTTTTATAGGGTT------------CTGGAATGCC------ATCGCACCCCCCTACCTCCACTAAC---CACCACCACGAGCC
droBia1 scf7180000302126:687144-687535 + GATAC---CCCACAGAA------TAGAATCTCCC-CCATAATGTATCCCTTCGTAAGTTTTCAAAGCA-TT---CCCTTAGAT---T---------TTAGTTTTTGAAAGCATCTACCATTG--TCCCAAAGAATGTTTT-TGTAT-TTTGGAA---------------------------------------------------ATTA------ATTTAAGCTTGCTT---------------TCTAACTTT----------TTTGGCTTAAATTAA---------GTTATTTAAATCA---------------------------------------------ATGTT------------------------------------------TGTATAGTAC-------------------------------TTGGT----------------TTCTGGGTGAGTTAAATTCACACTTTTGGCCCCC--AG-CTGATTACATCTC---------TTTTTAATCCTTAAACATAAGT-AAATATG------------T-------GG-------------TTTGTGCGCTCGCTCTGCGAATA-TTAAGCT----------------------AAATC-TTTTGACCTTTATAGGGTTCTGGTTCTGGTTCTGGAATGCC------ATCGTACCCCCCCACCTCCACTAAC------CACCAAGAGCC
droTak1 scf7180000415703:31033-31410 - GAAACCC-CCCACAGAA------TAGAATCTTCC-CCATAATGTATCCCTTCGTAAGTTTT---------T---TCCTTAGAC---T---------TTTGTTC-TAAAAGCATTAATCATTAGATCCTAAAAAACGTTTT----ATTTTTTAAA---------------------------------------------------ATTT-GTTCGATCAAATCTTTTTT---------------TATGATTTT----------TTTAA---AAGATAA---------ATTATATAAATCA----TCAGAAA----------------------------------ATGTTAA---------------------------------------TTTTTTAGAAT-------------------------------ATTGT----------------TTCTCGGTGAGTTTCATTTACATTT--G--------TATCTGAAT-TAATTTTATTG-----------------AAGATATCT-AAATATGAAATG-----AAT-------GG---------------CTTTTG--GGCTCTGTGAATA-TTAAGCTCA----------------------ATT-TTTTGGCCTTTATAGGGTTCTG------GTTCTGGAATGCC------ATCGTACCCCCCTACCTCCACTAAT------CACCACGAGCC
droEle1 scf7180000491242:121018-121512 - GAAACC--CCCACAATA----TATAGAATTTCCC-TCATAATGTACCCTTTCGTAAGTTACAAATTC--TT---CCTCTAGAT---T---------TTAGTCT-TAGAAACATCATTCATCA--TATCAAACATTGTTTT----ATTTTTAAA--------------ACACAATCCATATATTGTCAGTTTATTAGTATTGAAAAACCTTGT---ATTTAAGGTTGCATTCTTTGTGTTA--TTCTTGAGTTTTTACA----TTTTGACTAAAATTAAAGGGATAAAATTATATTAATTATAGCTCAAAACTTGTATTCTTATTTTTTTTGGGCGTGTAAAATTTATGTTGA---------------------------------------T--------------------------------------------------------------------------------------------TCCTTAA-AATAATTATTTT-C-TTGAATGATTTTTAAGTTTTAAATATA-----------AAATAGTAGTAATTGGTGCACATTTGTTGATATTTTGTTCGTG--AGCCCCGCGAATA-TTAAGCGCAGTAGAGTCAAATTGAAATGTACATT-TTTTGACTTTTGTAGGGTT------------CCGGAATGCC------ATCGCACCCCCCTTCCTCCACTA--AC----------GAACC
droRho1 scf7180000777354:3941-4413 + GAAACCC-CCCACAGAA------TAGAATCTCCC-TCATAATGTATCCCTTCGTAAGTTTAAAATTC--TT---CCT-------------------TTAGTTT-TAAAAGCATCAATCATCA--TCTTTAACAAGGTTTT----AATT-TA--------------ATTAAAAGTCCATATTTTAAAAGTTTATTAGTATTGAA--ACCT-GTTC-----------TCATAATTCGTGTTTGTTTTATGAGATTTTATAAAACTTTCGATTTAAATTATAAGGATTAGCGTATAT--GTTATAGCTCAGAAATTG-------ATTTTTTTTGGG----------TTATGTTAAAAAAGGTATTACCACCATTTTCTTAGTTTTCACTAAGTGT--------------------------------------------------------------------------------------------TTCTTAA-AGCCATTATTTT-C-CTGAAAGATTTTTAATTTTTGAATGTA-----------AAATA-----AAT-----------------------TGTCGTG--AGCCCCGTGATTA-TTAAGCTCAATAGAGTCAATTTGAATTGTACATT-TTTTGACTTTTATAGGGTT------------CCGGAATGCC------ATCGCACCCCCCCACCTCCACTA--AC----------GAACC
droFic1 scf7180000454073:64697-64869 - GAAATCC-CCCACAGAA------TAGAATCTCCC-TCATAATGTATCCCTTCGTAAGTTTCCAAATGC-TATTGGCTTTAGAT---TATAAATATATTAGCTT-CAAAAGCATCAACCATCC--TTTTAACCAATGCTTA----TTTT-TT--------------ACTAACAATCTATACTTTTTAT--------------T------------------------------------------TATGATTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATAATTT----------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302441:191867-191963 + GAAA--A-CCCAAAGCG------TAGAATCTCCC-TCATAATGTATCCCTTCGTAAGTTGCCAATCCT-TT------TTAGACGAGCCTAAA------AACCT-TAAAAGCATCATTCACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13137:607483-607530 - GAAT--A-CTCAC-GAA------TAGAATCTCCC-TTACAATGTACCCATTCGTAAGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396740:705240-705314 + TTGTTA----------------------------------------------------------------------------------------------------------------------TGGAAATAAATGGTT-TAAC---TCTTAAATATAACAACATACCTATGTTTC----AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTTCTAGTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA--A-----------AAAGC
dp5 XL_group1e:9937951-9938034 - AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTGAATATTTTCGACTTTTATAGGGTT------------CTGGAATGCCTTATTCATCGCATCCACCTACTACTA-----ATGAGCCACCACCAAAT
droPer2 scaffold_22:297111-297194 + AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTGAATATTTTCGACTTTTATAGGGTT------------CTGGAATGCCTTATTCATCGCATCCACCTACTACTA-----ATGAGCCACCACCAAAT
droWil2 scf2_1100000004909:6437607-6437701 + AATTTGA-TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCTA--ACT---------------------------------------TGCATG-CTCTGATTTTTATAGGGTT------------CTGGAATGCCATATTCATCGCACCCTCCTCCACCACCTTCC------AATGAGCAGCG
droVir3 scaffold_12970:7568111-7568181 + T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTATTGTGTAT---TTTGACTTTTATAGGGTT------------CCGGAATGCC------ACAATCATCACATCCTTCTACTA--AT----------GAGCA
droMoj3 scaffold_6482:2153335-2153393 - ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGACTTTTGTAGAGTT------------CTGGAATGCC------ATATTCATCGCATCCATCCACTA--GT----------GAGCA
droGri2 scaffold_15203:7043469-7043566 - CTAT--GTTCAGTAG---TCTAATCGAAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------CCATGTA-TGTG--TA-TTTTGACTTTTATAGGGTT------------CTGGAATGCCACACTCATCACA------ACCCCCAACAA--AT----------GAGCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GAAATTA-TCCACAGAATCTCCATAGAACCTCCC-TCAAAATGTATCCCTTCGTAAGTTTTGAATGCACAT---CCTGTAGAT---T---------TTAGTTG-TAAAAGCATCAATCATTG--CATAAATCAGTGCCT-TGGT---TCTTAAATATCATAACATACTCACAATAT----AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTTTTTGGT-TATAAA---ACTATAATAATTT----------------ATGCGGGTGAGTTCATTGAATACTTTTCGTT--T--AGTCTGATT-CATTTTTCTAA------------------------GAGTTAGATG------------T-------CA-------------TTTGTGTG--AGCCCTGTGTTTAATCCAGCTCCATGGAGTCAACTTGAATTGTACATT-TTCTGACTTTTATAGGGTT------------CTGGAATGCC------ATCGCACCCCCCTACCTCCACTAAC------CACCACGAGCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........CCACAGAATCTCCATAGAACCTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000000000
..........CACAGAATCTCCATAGAACCTCCC-T....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
..........CACAGAATCTCCATAGAACCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGTG--AGCCCTGTG.................................................................................................................................1611.00100000000100000000
droSec2
GAAATTA-TCCACAGAATCTCCATAGAACCTCCC-TCAAAATGTATCCCTTCGTAAGTTTTGAGTCCACAT---CCTGTAGAT---T---------TTAGTTG-TAAAAGCATCAATCATAA-------------------------------ATATCATAACATATTCACAATAT----AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTTTTTGGTGGATAAA---ACTATAATAATTT----------------ATGCGGGTGAGTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT----------GAATASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
GAAATTA-TCCACAGAATCTCCATAGAACCTCCC-TCAAAATGTATCCCTTCGTAAGTTTTGAATGCACAT---CCTGTAGAT---T---------TTAGTTA-TAAAAGTATCAGC--------ATTAATAAGTGCCT-TGGT---TCTTAAATATCATAACATATTCACAATAT----ATTTTAT--------------AA--AT----------------------------------------AAG------------TTTGGTATA-------------------------------------------------------------------------------------------------------------------------------ACA---TATTTTTTTGGGTATAAA---ACTATAATAATTT----------------ATTCGGGTGAGTTC----------TTTCGTT--T--AGTCTGATT-CATTTTTCTAA------------------------GAGATAGATG------------T-------CA-------------TTCTTGTG--AGCTCTGTGTTTAATTCAGCGCCATGGAGTCAACTTGAATTGTACATT-TTCTGACTTTTATAGGGTT------------CTGGAATGCC------ATCGCACCCCCCTACCTCCACTAAC------CACCACGAGCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACTAAC------CACCACGAGCC2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TCTCCATAGAACCTCCC-TCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AATTA-TCCACAGAATCTCCATAGAACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TCCC-TCAAAATGTATCCCTTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............AATCTCCATAGAACCTCCA-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
.................TCTCCATAGAACCTCCC-TCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCACTAAC------CACCACGAGC.2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............AATCTCCATAGAACCTCCC-TCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCCATGGAGTCAACTTGAA...................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CC-TCAAAATGTATCCCTTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TAGAACCTCCC-TCAAAATGTATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................ATCTCCATAGAACCTCCC-TCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATT-CATTTTTCTAA------------------------GAG..............................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
..........CACAGAATCTCCATAGAACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTT----------------ATTCGGGTGAGTTC----------TTT.......................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAA------------------------GAGATAGATG------------T-------CA-------------TT..................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
..AATTA-TCCACAGAATCTCCATAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTT----------------ATTCGGGTGAGTTC----------TT........................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TAGAACCTCCC-TCAAAATGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................CTCCC-TCAAAATGTATCCCTTCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................TCCC-TCAAAATGTATCCCTTCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............AATCTCCATAGAACCTCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CACAGAATCTCCATAGAACCTCCC-T....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA------------------------GAGATAGATG------------T-------CA-------------TTCTTGTG--AGC.......................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAA---ACTATAATAATT...................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------CA-------------TTCTTGTG--AGCTCTGTGTT...............................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
...............................................................ATGCACAT---CCTGTAGAT---T---------TTAGTTA-................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
.....TA-TCCACAGAATCTCCATAGAACCTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............GAATCTCCATAGAACCTCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......A-TCCACAGAATCTCCATAGAACCTCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................CAAAATGTATCCCTTCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
......................ATAGAACCTCCC-TCAAAATGTATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................GTATA-------------------------------------------------------------------------------------------------------------------------------ACA---TATTTTTTTG..........................................................................................................................................................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GAAATTA-TCCACAGAA------TAGAATCTCCC-TCAAAATGTATCCCTTCGTAAGTTTTGAATGCACAT---CCTGTAGAT---T---------TTAGTTA-TAAAAGCATCACCCATTA--TGTTAAT--GTGCTT-TTTT---TATT--ATTTCATTATATATTCACCATAC----TTTTTAT--------------AA--AC----------------------------------------AACT-----------TTTTGTATA-------------------------------------------------------------------------------------------------------------------------------ACA---TACTTTTTG--GTATAAA---ATTGTAATAATTT----------------TTTCGGGTGAGATCGATTAACACATTTGGTT--C--AGTCTGATC-CATTTTTCTAA------------------------GCGATAGATG------------C-------CA-------------TTTGTGTG--AGCTCCGTGTTTA-ATCAGCTCCATGGAGTCATCTTGAATTGTACATT-TTCTGACTTTTATAGGGTT------------CTGGAATGCC------ATCGCACCCCCCTACCTCTACTAAC------CACCACGAGCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTACTAAC------CACCACGAGC.2011.0010000100
....................................CAAAATGTATCCCTTCGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000100
droYak3
GAAATTA-TCCACAGAA------TAGAATCTCCCATCAAAATGTATCCCTTCGTAAGTTTTGAAA-CACAT---CCTGTAGAT---T---------TTAGTTA-TGAAAGCAACACCCATAA--TATTAATAAGTGCTTCTTTT---TATTTAATATCATATTATATTCACCATAT----ATTTTAT--------------AA--A------------------------------------------------------AATTTTGTTTA-------------------------------------------------------------------------------------------------------------------------------ACA---TCCCTTTTG--TTACAAA---ATTGTAATGATTA----------------TTTTGCATGAGTTCG------------CTTT--T--AGTCTGATT-CATTTTTCTTG------------------------GCGATAGATG------------T-------CA-------------TTTGTGTG--ACTTCTGTGTTTA-AACAGCTCCATGGAGGCAACTTGAAATGTACATT-TTCTGACTTTTGTAGGGTT------------CTGGAATGCC------ATCGCACCCCCCTACCTCCACTAAC------CACCACGAGCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........CACAGAA------TAGAATCTCCCATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATT-CATTTTTCTTG------------------------GCGATAGAT........................................................................................................................................................................................2411.00100000010000
droEug1
GAAACTC-CCCACAGAA------TAGAATCTCCC-TCATAATGTATCCCTTCGTAAGTTTTCAATTTT-TT---CCCTTAGAT---T---------TTAGTTT-CTAAAGCATCAATCATCA--TTTTAAACAATGTTTT-AGT---TCTCAAA---------------------------------------------------ATTA------ATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAGTATACTGATTTTAGTTTGAAATATTAATTTTAATATTTTATATATTTATACTTTTTTCTGGGTGAATA---TTCAAA-----------A--ATTGTGCTT-AATTTTTCTTT-----ACCT-AC----------------------------------T-------CT-------------TTATCATG--AGCTCTGTAAAAC-CTAAGCT---------CAACTTGAATTGTAAATT-TTTTGACTTTTATAGGGTT------------CTGGAATGCC------ATCGCACCCCCCTACCTCCACTAAC---CACCACCACGAGCCSizeHit CountTotal NormTotal
No Reads
droBia1
GATAC---CCCACAGAA------TAGAATCTCCC-CCATAATGTATCCCTTCGTAAGTTTTCAAAGCA-TT---CCCTTAGAT---T---------TTAGTTTTTGAAAGCATCTACCATTG--TCCCAAAGAATGTTTT-TGTAT-TTTGGAA---------------------------------------------------ATTA------ATTTAAGCTTGCTT---------------TCTAACTTT----------TTTGGCTTAAATTAA---------GTTATTTAAATCA---------------------------------------------ATGTT------------------------------------------TGTATAGTAC-------------------------------TTGGT----------------TTCTGGGTGAGTTAAATTCACACTTTTGGCCCCC--AG-CTGATTACATCTC---------TTTTTAATCCTTAAACATAAGT-AAATATG------------T-------GG-------------TTTGTGCGCTCGCTCTGCGAATA-TTAAGCT----------------------AAATC-TTTTGACCTTTATAGGGTTCTGGTTCTGGTTCTGGAATGCC------ATCGTACCCCCCCACCTCCACTAAC------CACCAAGAGCCSizeHit CountTotal NormTotal
No Reads
droTak1
GAAACCC-CCCACAGAA------TAGAATCTTCC-CCATAATGTATCCCTTCGTAAGTTTT---------T---TCCTTAGAC---T---------TTTGTTC-TAAAAGCATTAATCATTAGATCCTAAAAAACGTTTT----ATTTTTTAAA---------------------------------------------------ATTT-GTTCGATCAAATCTTTTTT---------------TATGATTTT----------TTTAA---AAGATAA---------ATTATATAAATCA----TCAGAAA----------------------------------ATGTTAA---------------------------------------TTTTTTAGAAT-------------------------------ATTGT----------------TTCTCGGTGAGTTTCATTTACATTT--G--------TATCTGAAT-TAATTTTATTG-----------------AAGATATCT-AAATATGAAATG-----AAT-------GG---------------CTTTTG--GGCTCTGTGAATA-TTAAGCTCA----------------------ATT-TTTTGGCCTTTATAGGGTTCTG------GTTCTGGAATGCC------ATCGTACCCCCCTACCTCCACTAAT------CACCACGAGCCSizeHit CountTotal NormTotal
No Reads
droEle1
GAAACC--CCCACAATA----TATAGAATTTCCC-TCATAATGTACCCTTTCGTAAGTTACAAATTC--TT---CCTCTAGAT---T---------TTAGTCT-TAGAAACATCATTCATCA--TATCAAACATTGTTTT----ATTTTTAAA--------------ACACAATCCATATATTGTCAGTTTATTAGTATTGAAAAACCTTGT---ATTTAAGGTTGCATTCTTTGTGTTA--TTCTTGAGTTTTTACA----TTTTGACTAAAATTAAAGGGATAAAATTATATTAATTATAGCTCAAAACTTGTATTCTTATTTTTTTTGGGCGTGTAAAATTTATGTTGA---------------------------------------T--------------------------------------------------------------------------------------------TCCTTAA-AATAATTATTTT-C-TTGAATGATTTTTAAGTTTTAAATATA-----------AAATAGTAGTAATTGGTGCACATTTGTTGATATTTTGTTCGTG--AGCCCCGCGAATA-TTAAGCGCAGTAGAGTCAAATTGAAATGTACATT-TTTTGACTTTTGTAGGGTT------------CCGGAATGCC------ATCGCACCCCCCTTCCTCCACTA--AC----------GAACCSizeHit CountTotal NormTotal
No Reads
droRho1
GAAACCC-CCCACAGAA------TAGAATCTCCC-TCATAATGTATCCCTTCGTAAGTTTAAAATTC--TT---CCT-------------------TTAGTTT-TAAAAGCATCAATCATCA--TCTTTAACAAGGTTTT----AATT-TA--------------ATTAAAAGTCCATATTTTAAAAGTTTATTAGTATTGAA--ACCT-GTTC-----------TCATAATTCGTGTTTGTTTTATGAGATTTTATAAAACTTTCGATTTAAATTATAAGGATTAGCGTATAT--GTTATAGCTCAGAAATTG-------ATTTTTTTTGGG----------TTATGTTAAAAAAGGTATTACCACCATTTTCTTAGTTTTCACTAAGTGT--------------------------------------------------------------------------------------------TTCTTAA-AGCCATTATTTT-C-CTGAAAGATTTTTAATTTTTGAATGTA-----------AAATA-----AAT-----------------------TGTCGTG--AGCCCCGTGATTA-TTAAGCTCAATAGAGTCAATTTGAATTGTACATT-TTTTGACTTTTATAGGGTT------------CCGGAATGCC------ATCGCACCCCCCCACCTCCACTA--AC----------GAACCSizeHit CountTotal NormTotal
No Reads
droFic1
GAAATCC-CCCACAGAA------TAGAATCTCCC-TCATAATGTATCCCTTCGTAAGTTTCCAAATGC-TATTGGCTTTAGAT---TATAAATATATTAGCTT-CAAAAGCATCAACCATCC--TTTTAACCAATGCTTA----TTTT-TT--------------ACTAACAATCTATACTTTTTAT--------------T------------------------------------------TATGATTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATAATTT----------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GAAA--A-CCCAAAGCG------TAGAATCTCCC-TCATAATGTATCCCTTCGTAAGTTGCCAATCCT-TT------TTAGACGAGCCTAAA------AACCT-TAAAAGCATCATTCACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
GAAT--A-CTCAC-GAA------TAGAATCTCCC-TTACAATGTACCCATTCGTAAGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......A-CTCAC-GAA------TAGAATCTCCC-TTAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
..AT--A-CTCAC-GAA------TAGAATCTCCC-TTAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
..............................TCCC-TTACAATGTACCCATTCGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.............................CTCCC-TTACAATGTACCCATTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
...........AC-GAA------TAGAATCTCCC-TT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
droBip1
TTGTTA----------------------------------------------------------------------------------------------------------------------TGGAAATAAATGGTT-TAAC---TCTTAAATATAACAACATACCTATGTTTC----AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTTCTAGTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA--A-----------AAAGCSizeHit CountTotal NormTotal
No Reads
dp5
AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTGAATATTTTCGACTTTTATAGGGTT------------CTGGAATGCCTTATTCATCGCATCCACCTACTACTA-----ATGAGCCACCACCAAATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTGAATATTTTCGACTTTTATAGGGTT------------CTGGAATGCCTTATTCATCGCATCCACCTACTACTA-----ATGAGCCACCACCAAATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCGACTTTTATAGGGTT------------CT........................................................2311.001100000
droWil2
AATTTGA-TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCTA--ACT---------------------------------------TGCATG-CTCTGATTTTTATAGGGTT------------CTGGAATGCCATATTCATCGCACCCTCCTCCACCACCTTCC------AATGAGCAGCGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTATTGTGTAT---TTTGACTTTTATAGGGTT------------CCGGAATGCC------ACAATCATCACATCCTTCTACTA--AT----------GAGCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCACATCCTTCTACTA--AT----------GAGC.2611.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACATCCTTCTACTA--AT----------GAGC.2311.001000000000000000000000010000000000000000000000000000000000000000
droMoj3
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGACTTTTGTAGAGTT------------CTGGAATGCC------ATATTCATCGCATCCATCCACTA--GT----------GAGCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCC------ATATTCATCGCATCC...........................1911.001000010
droGri2
CTAT--GTTCAGTAG---TCTAATCGAAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------CCATGTA-TGTG--TA-TTTTGACTTTTATAGGGTT------------CTGGAATGCCACACTCATCACA------ACCCCCAACAA--AT----------GAGCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 12:41 AM