ID:

dsi_15027

 Coordinate:

2r:20071180-20071373 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.3 -18.1 -18.1 -18.0

Flybase annnotation

exon [2r_20071374_20071433_+]; CDS [2r_20071374_20071433_+]; exon [2r_20070974_20071179_+]; CDS [2r_20070974_20071179_+]; intron [2r_20071180_20071373_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATAATTGATGCGCGCTCCTCCAAGAACCTGGATGCGGAGCACATTGCGAGGTGGGTAGTGATAATGCTAGTGGTTGGGGCAGTAAGTGCCAGATGTGAAATGGGTTTCGGTCGAGTTTGGGCTCGGGCTTGGGCTTGGGCTTGGGTTGGCCACCAAACTTCTCGAAACTTTTCCATTTTCATAAACTTTTCACTTTGCTATAAAACTTGGCGTCTCCTCTTTTCGGTGGCTCCCGTCCCCACAGAACCATTCGTCACACACACGGCCACCATTTAACGACAATAATTGCAGTCT
**************************************************************************************.....(((................((((((((((((((......)))))))))))))))))*************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M053
female body
 SRR902009
testis
 M025
embryo
 SRR902008
ovaries
............................................................ATAACGATAGTGGTTAGGGC...................................................................................................................................................................................................................... 20 3 1 9.00 9 6 0 1 2 0 0 0 0 0 0 0 0
............................................................ATAACGATAGTGGTTAGGGCA..................................................................................................................................................................................................................... 21 3 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TCGGGCTTGGGCTTGGGCTTGGGTT................................................................................................................................................... 25 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TTCGGTCGAGTTTGG.............................................................................................................................................................................. 15 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TTTCGGTCGAGTTTGGGCTCGGGC...................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
....................CAAGAACCTGGATGCGGAGCACATTGC....................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................ATTGCGTGGTGGGTAGT........................................................................................................................................................................................................................................... 17 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................TGCCAGATGTGAAATGGGTTTCGGT....................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................TCGGGCTTGGGCTTGGGCTTGGG..................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
................CCTCCAAGAACCTGGATGCGGA................................................................................................................................................................................................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................AAGAACCTGGATGCGGAGCAC............................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
..............................................CGAGGTGGGTAGTGATAAT..................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.................CTCCAAGAACCTGGATGCGGAGCAC............................................................................................................................................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................GATGCGGAGCACATTGCGG..................................................................................................................................................................................................................................................... 19 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
................CCTCCAAGAACCTGGATGCGG................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................................................................GCCACCATTTAAAGA............... 15 1 20 0.90 18 0 0 0 4 0 0 14 0 0 0 0 0
......................................GGACATGGCGTGGTGGGTAGT........................................................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................ACATGGCGTGGTGGGTAGT........................................................................................................................................................................................................................................... 19 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
...........GCGCTCCTCCAATAACCT......................................................................................................................................................................................................................................................................... 18 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................................CGAGTTTGGCCTCGGG....................................................................................................................................................................... 16 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................ATAACGATAGTGGTTAGGG....................................................................................................................................................................................................................... 19 3 10 0.40 4 4 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................AGTCGAGTCTGGCCTCGGGC...................................................................................................................................................................... 20 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................GTTCGAGTCTGGCCTCGGGC...................................................................................................................................................................... 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................GTCGAGTCTGGCCTCGGGCA..................................................................................................................................................................... 20 3 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................TGATAACGATAGTGGTTAGG........................................................................................................................................................................................................................ 20 3 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................AGCACATTGCCAGGTAGGTA............................................................................................................................................................................................................................................. 20 2 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................GCTCGGGCGTGAGCTTGG............................................................................................................................................................ 18 2 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................CGAGTCTGGCCTCGGGC...................................................................................................................................................................... 17 2 10 0.20 2 0 0 2 0 0 0 0 0 0 0 0 0
.........................................................................................................TTCGGTCGAGCTTGG.............................................................................................................................................................................. 15 1 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................CTCGGGCGTGAGCTTGGG........................................................................................................................................................... 18 2 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0 0
.......................................CACATTGCCAGGTGGGGA............................................................................................................................................................................................................................................. 18 2 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................AGTCGAGTCTGGCCTCGGG....................................................................................................................................................................... 19 3 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................GTTTCGGTCGAGCTCGG.............................................................................................................................................................................. 17 2 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................CACATTGTCAGGTGGGGAGT........................................................................................................................................................................................................................................... 20 3 13 0.08 1 0 0 0 0 0 0 0 1 0 0 0 0
....................................AAGGACATTGCGTGGTGGGT.............................................................................................................................................................................................................................................. 20 3 13 0.08 1 0 0 0 0 0 0 1 0 0 0 0 0
............................................TGCGTGGTGGGTAGT........................................................................................................................................................................................................................................... 15 1 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................TGCGAGGTGGGTAGTTT......................................................................................................................................................................................................................................... 17 2 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................GTGGAAGGGGCAGTAACTGC............................................................................................................................................................................................................. 20 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 1
...................................................................................AATTGTCAGATGTGAAAT................................................................................................................................................................................................. 18 2 18 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................AGTTTGGCCTCGGGCA..................................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................GAGTTTGGCCTCGGGCA..................................................................................................................................................................... 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................TCGGGCGTGAGCTTGGG........................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

TATTAACTACGCGCGAGGAGGTTCTTGGACCTACGCCTCGTGTAACGCTCCACCCATCACTATTACGATCACCAACCCCGTCATTCACGGTCTACACTTTACCCAAAGCCAGCTCAAACCCGAGCCCGAACCCGAACCCGAACCCAACCGGTGGTTTGAAGAGCTTTGAAAAGGTAAAAGTATTTGAAAAGTGAAACGATATTTTGAACCGCAGAGGAGAAAAGCCACCGAGGGCAGGGGTGTCTTGGTAAGCAGTGTGTGTGCCGGTGGTAAATTGCTGTTATTAACGTCAGA
***************************************************************************************************************************************************.....(((................((((((((((((((......)))))))))))))))))************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
............................................................................................................................................................................GGTACAAGTCTTTGAAAAGTG..................................................................................................... 21 2 1 1.00 1 0 0 0 0 1 0 0
....................................................................................................................................................................................................................................CGGGGGCAGGGGGGTCTTG............................................... 19 2 1 1.00 1 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................................................AAGCAGTGTGTGTGCCGGTGGTAAAT................... 26 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................GGTTTGAAGAGCTTTGTTAAGAT....................................................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0
.........CGCGCGAGGAGGTACGTGGACT....................................................................................................................................................................................................................................................................... 22 3 2 0.50 1 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................AAAAGGCACCGAGGTCAGAGGT..................................................... 22 3 2 0.50 1 0 0 0 0 0 1 0
.........CGCGCGAGGAGGTCCGTGGACT....................................................................................................................................................................................................................................................................... 22 3 3 0.33 1 0 0 1 0 0 0 0
..........GCGCGAGGAGGTACATGGACT....................................................................................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 1 0 0 0 0
............GCGAGGAGTTTCTTG........................................................................................................................................................................................................................................................................... 15 1 8 0.13 1 1 0 0 0 0 0 0
.........................................................................................................................................................................AAAGGTAAATGTATTTG............................................................................................................ 17 1 10 0.10 1 0 0 0 0 0 0 1
...........................................................................................................................................................................AGGTAAAAGGATTTGA........................................................................................................... 16 1 10 0.10 1 0 0 0 0 0 0 1
.............................................................................................................................................................................GGAAAAGTATTTGAAAACGGA.................................................................................................... 21 3 13 0.08 1 0 1 0 0 0 0 0
................GGAGGTTCTTAGAACTACA................................................................................................................................................................................................................................................................... 19 3 15 0.07 1 0 0 0 0 0 0 1
...........................................................................................................................................................................................................TTGAACCGCTGAGGGGA.......................................................................... 17 2 15 0.07 1 0 1 0 0 0 0 0
........GGGCGCGAGGAGGTTC.............................................................................................................................................................................................................................................................................. 16 2 20 0.05 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................GGTAAATTGTTGTTAT.......... 16 1 20 0.05 1 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:20071130-20071423 + dsi_15027 ATAATTGATGCGCGCTCCTCCAAGAACCTGGATGCGGAGCACATTGCGAGGTGGGTA-----G------TG---------ATAATG-CTAGTG-GT------T-----------------------------G--------------------------GGGCAGTAA----GTGCCAGATGTGAAATGGGTT-TCG------------------------------------------GTCGAGTTT--GGGCTCGG-GCTTGGGCTTGGGCTTGGGT-TGGCCACC----------A-AACT--------T--CTC-GAAACTTTTC--CATTTTCATAAACTTTTCACTTTGCTATAA-A---ACTTGGCGTC-------TCCTC---TTT----TCGG----T---------------GG----------------CTCCCGTCCCCACAGAACCATTCGTCACACACACGGCCACCATTTAACGACAATAATTGCAGTCT
droSec2 scaffold_9:2841482-2841770 + ATAATTGATGCGCGCTCTTTCAAGAACCTGGATGCGGAGCACATTGCGAGGTAGGTA-----G------TG---------ATAATG-CTAGTG-GT------T-----------------------------G--------------------------GGGCAGTAA----GTGCCAGATGTGAAATGGGTT-TCG-----------------------------------------GGTCGAGTTT--GGTCTCGG-GCTTG------GGCTTGGGT-TGGCCACC----------A-AACT--------T--CTC-GAAACTTTTC--CATTTTCATAAACTTTTCACTTTGCTATAA-A---ACTTGGCGTC-------TCCTC---TTT----TCGG----T---------------GG----------------CTGCCGTCCCCACAGAACCATTCGTCACACACACGGCCACCATTTAACGACAATAATTGCAGTCT
dm3 chr2R:19562093-19562376 + ATAATTGATGCGCGCTCCTCCAAGAACCTGGATGCGGAGCACATTGCGAGGTGGGTA-----G------TG---------ATAATG-GCAGTG-GT------T----------------------T------G--------------------------GGGCAGTAA----GTGCCAGATGTGAAATGGGTT-TCG-----------------------------------------GGTCGAGTTT--GGGCTTG-------------GGCTTGGGC-TGGCCACC----------A-AACT--------T--CTC-GAAACTTTTC--CATTTTCATAAACTTTTCACTTTGCTATAA-A---ACTTGGCGTC-------TCCTC---TTT----TCGG----T---------------GC----------------CTGCCGCCTCCACAGAACCATTCGTCACACACACGGCCACCATTTAACGACAATAATTGCAGTCT
droEre2 scaffold_4845:20924015-20924251 + ATAATTGATGCGCGCTCCTCCAAGAACCTGGATGCGGAGCACATTGCGAGGTGGGTA-----G------T--------------------------------------------------------------------------------------------------------GGCAGATGTGAAATGGGTT-TCG-----------------------------------------GGTCGAGTTT--GTTCCCGG-------------GCTTGGGT-TGGCCGCC----------A-AACT--------T--CTC-GAAACTTTTC--CATTTTCATAAACTTTTCACTTTGCTATAA-A---ACTTGACGTC-------TCC------------------------------------------------------------TCCCCACAGAACCATTCGTCACACACACGGCCACCATTTAACGACAATAATTGCAGTCT
droYak3 2R:19538740-19538997 + ATAATTGATGCGCGCTCCTCCAAGAACCTGGATGCGGAGCACATTGCGAGGTGCGTA-----G------TG---------GTTGTG-GTAGTGGGT------T------------------------------------------------------------AAAAA----GTGCCAGATGTGAAATGGGTT-TCA-----------------------------------------AGTTGGGTTT--GGGTTCG-----------------------------------------G-AACT--------T--CTC-GAAACTTTTC--CATTTTCATAAACTTTTCACTTTGCTATAA-A---ACTTGCCGTC-------TCCTC---TTC----TCGG---------------------------------------TGCCGTACCCACAGAACCATTCGTCACACACACGGCCACCATTTAACGACAATAATTGCAGTCT
droEug1 scf7180000409474:84209-84468 - ATAATTGATGCGCGTTCCACCAAGAACCTGGATGCGGAGCACATTGCGAGGTGGGTC-TGG-G---------TC-TGGGA-TA-------GCGGGT-----------------------------------------------------------------------------TGGCAAATGTGAAATGGGTTTTCG-----------------------------------------GGTCGAGTTT--CGG--------------------TTGGGT-TGGC---C----------A-AACT--------T--CTC-AAAACTTTTC--CATTTTCATAAACTTTTCACTTTGCAATAA-A---ACTTGCTGTC-------TCCTC---TGC----TCG---------------------------------------CTTCCGTCCCCACAGAACCATACGTCACACACACGGCCACCATTTAACGACAATAATTGCAGTCT
droBia1 scf7180000301754:4028643-4028877 + ATAATTGATGCGCGTTCCACCAAGAACCTGGATGCGGAGCACATTGCCAGGTGGGTA-----A------T----------------------GGGT-----------------------------------------------------------------------------TGGCCGCTGTGAAATGGGTT-CCG-----------------------------------------GGACGGGTTT-------------------------TTGGGC-T-GC---CAAACTTACG-G-AAAC--------TTTTTA-ACAACTTTTC--CATTTTCATAAACTTTGCACTTTGCCATAA-A---ACTTGCC-------------TC----------------------------------------------------------TGCCCACAGAACCATACGTCACACACACGGCCACCATTTAACGACAATAATTGCAGTCT
droTak1 scf7180000415306:115631-115822 - -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCAGATGTGAAATGGGTT-TAG-----------------------------------------GGTCGAGTTT--------------------------TGGGT-TGGC---CAAACTTACC-A-AACT--------TCTCTC-AAAACTTTTC--CATTTTCATAAACTTTTCACTTTGCTATAA-A---ACTTGATGAC-------CCCCCTCTTTC----T-----------------------CC----------------CTTTC-TCCTTCCAGAACCATACGTCACACACACGGCCACCATTTAACGACAATAATTGCAGTCT
droEle1 scf7180000491201:1217661-1217942 - ATAATTGATGCGCGCTCCACTAAAAACCTGGATGCGGAGCACATTGCGAGGTGGGTA-----G------TGG--------ATAGTGGGTAGTG-GG------T----------------------T------GTGGGTGATGCGTAAAGG---TCACCGGG---GTAATGGGTTGCCCGATGTGAAATGGGTT-CCG-----------------------------------------GGTCGAGTTT--------------------------CGGGT-TGGC---C----------A-AACT--------T--CACAAAAACTTTTT--CATTTTCATAAACTTTTCACTTTGCAATAAAA---ACTTGCTGTC-------TTC----------------------------------------------------------GTTCCCCACAGAACCATACGTCACACACACGGCCACCATTTAACGACAATAATTGCAGTCT
droRho1 scf7180000778122:97666-97922 - ATAATTGATGCGCGTTCCACGAAGAACCTGGATGCGGAGCACATTGCGAGGTGGGTA-----G------TGG--------GTAAT-------GGGT------T----------------------------------------------------------------------TGCGAGTTGTGAAATGGGTT-TCG-----------------------------------------GGTTGAGTTTCAAGTTT-------------------CGGGT-CGGT---C----------A-AACT--------T--CTC-AAAACTTTTC--CATTTTCATAAACTTTTCACTTTGCAATAA-A---ACTTGCTGTC-------TCCGC---ACT----TCG---------------------------------------TTGCCGTCCCCACAGAACCATACGTCACACACACGGCCACCATTTAACGACAATAATTGCAGTCT
droFic1 scf7180000453809:653812-654112 - ATAATTGATGCACGCTCCACCAAGAACCTGGACGCCGAGCACATTGCGAGGTGGGTTTCA-------------------------------------------CA-AAGAGAGGTTTTTATGGGTTTTTTCCGGGGGGGAGGGGTAGA-----------------TGATGTCCTGCCCAATGTGAAATGGGTT-TCG-----------------------------------------GGTCGAGTTT-------------------------TTGGGTTTGGC---CA---------A-AACT-TCTCGCCT--CTC-GAAACTTTTC--CATTTTCATAAACTTTTCACTTTGCCATAA-A---ACTTGCCGC----TGTCGCCTC---TTT----T------------------------------------------CTCACTCCCAACAGAACCATACGTCACACACACGGCCACCATTTAACGACAATAATTGCAGTCT
droKik1 scf7180000302470:2170978-2171248 - ATAATTGATGCTCGCTCCGCCAAGAATCTTGATGCAGAGCACATTGCGAGGTGGGTT-TGGGG---------TTTGGGGT-T---------------------------------------------------TGG------------GG---TTCCTGG---AGTAATGGGTTGCCCGAGTTGAAATGGGTT---------------------------------------------------------------------------------CGGGT-TGGC---CGA--------A-AAGT--------T--TAC-AAAACTTTTC--CATTTTCATAAACTTTTCACTTTGCCATAA-A---ACTTGATCTT----------------AC----T-----------------------CTCTTTCTGTCTTTGGTACTCCTGCTCCTCCAGAACCATACGTCACACACACGGCCACCATTTAACGACAATAATTGCAGTCT
droAna3 scaffold_13266:8197086-8197367 + dan_1873 ATAATTGATGCCCGTTCCTCCAAGAATCTGGATGCGGAGCATATTGCGAGGTGGGTTCTCGGCTGGTCAT--------------------------------------------------------------------------------------------------------GGTCGCTATGAAATGGGTT-TTGTTTTTTTGGGTTTAGGCTTCT--------------------GGTTGAGTTTTTTGGGTCGG-GT-TG------GG--TCGGT-TGGG---C----------A-AAGT--------T--TTT-AAAACTTTTC--CATTTTCATAAACTTTTCACTTTGCCATAA-A---ACTTGCTGTC-------TCCTC---C--GC--------------------------------------------TTCTGCTCCCCACAGAACCATACGTCACACACACGGCCACCATTTAACGACAATAATTGCAGTCT
droBip1 scf7180000396759:619719-619988 - ATAATTGATGCCCGTTCCTCCAAGAATCTGGATGCGGAGCATATTGCGAGGTGGGTTCTCCGG--------------------------------------------------------------------------------------------------------------TG----CTATGAAATGGGTT-TTGTT---TTGGGTTTAAGCTTTGGGTTCAGGTTTTTTGTTTTGGGTCGAGT-----------------------------CGGT-TGGG---C----------A-AAGT--------T--TTT-GAAACTTTTC--CATTTTCATAAACTTTTCACTTTGCCATAA-A---ACTTGCTGTC-------TCCTC---C--GC--------------------------------------------TTCTACTCCCCACAGAACCATACGTCACACACACGGCCACCATTTAACGACAATAATTGCAGTCT
dp5 3:9439517-9439811 - ATAATTGATGCGCGCTCCTCGAAAAATCTAGATGCCGAGCATATTGCAAGGTAAGATATGCGG---------TT-CGGGT-T---------CGGTTCGGCAACCA-AAAATATATCTACATGAGT--------TGG------------GTCTCTCTCTCG---TCTTAGGGGCTGCTCAAGTTTATAT-----------------------------------------------------A----------------AGT------------T------TGGT---CGA--------A-AAGT--------T--TTC-CCAACTTTTT--CATTTTGATAAACTTTACACTTTGCTATAA-A---ACTTGCTT-C---TCTCTCTCT---ATC----T-----------------------CT----------------CTCTCTCCTCAACAGAACAATACGTCATACACATGGACACCATTTAACGACAATAATTGCCGTCT
droPer2 scaffold_4:4762932-4763220 - ATAATTGATGCGCGCTCCTCGAAAAATCTAGATGCCGAGCATATTGCAAGGTAAGATATGCGG---------TT-CGGGT-T---------CGGTTCGGCAACCA-AAAATATATCTACATGAGT--------TGG------------GTCTCTCTCTCG---TCTTAGGGGCTGCTCAAGTTTATAT-----------------------------------------------------A----------------AGT------------T------TGGT---CGA--------A-AAGT--------T--TTC-CCAACTTTTT--CATTTTGATAAACTTTACACTTTGCTATAA-A---ACTTGCTT-C---T---CTCTC---T------------------------------CT----------------CTCTCTCCTCATCAGAACAATACGTCATACACATGGACACCATTTAACGACAATAATTGCCGTCT
droWil2 scf2_1100000004954:2493131-2493356 - ATAATTGATGCGCGCTCCACCAAAAATCTTGATGCCGAGCACATTGCAAGGTGAGAG-----------------------AAAATT-TAAG-------------------------C-------------------------------------------------------------------AAATGGG------------------------------------------------------------------------------------------------C----------A-AAGT--------T--TTT-C---CTTTTCGGCATTCACTCAAACTTTTTACTTTACTCCGC------------------------------C-------CA-----CCCTCGTCCTACCGCATCCTCCCTGTCCTCTGTCTTCTGTTTCTTGTAGAACTATACGTCACACCCACGGACATCATTTAACGACAATAATTGCCGTCT
droVir3 scaffold_12875:18432589-18432813 - dvi_7753 ATAATTGATGCGCGCTCCACAAAAGGTCTCGATGCCGAGCACATTGCAAGGTGAGTG-----C------TGG------------------------------CCAA-CGTTGCGTATACGTGA----------------------------------------------------------------------------------------------------------TGT-------------------------------------------------------C---------CCAACAGCAACAGCAG--CGA-AAAACTTTAC--TA-------AAACTTATCACTT------AA-ATTGATTTGCCATC-------TCCCA---TTT----CCCA----T---------------TT----------------CCCACTGCCCACTAGAACAATACGTCACACACATGGACATCATTTAACGACAATAATTGCCGTCT
droMoj3 scaffold_6496:12081719-12081928 - ATAATTGATGCGCGCTCCACAAAGGGTCTCGACGCCGAGCACATTGCAAGGTGAGTG-CG-----------G------------------------------CGTA-CGTTGCGTATACGTGA----------------------------------------------------------------------------------------------------------TG----------------------------------------------------G---C----------A-AACT--------CTTGCC-GAAACT--------------------TTGCACTTTAAC-------TGATGCGA--ACTTCTTCACACAT---ATT----TCGCTTCAT---------------TC----------------T---C-CACTGCCAGAACAATACGCCACACACACGGACATCACTTAACGACAATAATTGCCGTCT
droGri2 scaffold_15245:4547184-4547405 - ATAATTGATGCGCGCTCCACAAAGGGTCTCGATGCCGAGCACATTGCAAGGTGAGTG-TG-----------T------------------------------CAAG-CATTGCGTATACGTGA----------------------------------------------------------------------------------------------------------TGTGATTTCTCTA----------------AAC------------T------TGGT---TGC-------CCCAAGG-----------------------------CAACAATGAACTTTCCACTTA------------ACTGGCCTTC---A---ATTTC---T--GCTTCTG----------------------C----------------TTCCATCTTTATTAGAGCCATACGTCACACACATGGACATCATTTAACGACAATAATTACGGTCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATAATTGATGCGCGCTCCTCCAAGAACCTGGATGCGGAGCACATTGCGAGGTGGGTA-----G------TG---------ATAATG-CTAGTG-GT------T-----------------------------G--------------------------GGGCAGTAA----GTGCCAGATGTGAAATGGGTT-TCG------------------------------------------GTCGAGTTT--GGGCTCGG-GCTTGGGCTTGGGCTTGGGT-TGGCCACC----------A-AACT--------T--CTC-GAAACTTTTC--CATTTTCATAAACTTTTCACTTTGCTATAA-A---ACTTGGCGTC-------TCCTC---TTT----TCGG----T---------------GG----------------CTCCCGTCCCCACAGAACCATTCGTCACACACACGGCCACCATTTAACGACAATAATTGCAGTCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................................................................................TCGG-GCTTGGGCTTGGGCTTGGGT-T................................................................................................................................................................................................................................2512.00202000000000000000
................................................................................................................................................................................................T-TCG------------------------------------------GTCGAGTTT--GG.............................................................................................................................................................................................................................................................1512.00200000000200000000
...............................................................................................................................................................................................TT-TCG------------------------------------------GTCGAGTTT--GGGCTCGG-GC....................................................................................................................................................................................................................................................2411.00100000000001000000
....................CAAGAACCTGGATGCGGAGCACATTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
.............................................................................................................................................................................TGCCAGATGTGAAATGGGTT-TCG------------------------------------------GT........................................................................................................................................................................................................................................................................2511.00100000000010000000
..............................................................................................................................................................................................................................................................TCGG-GCTTGGGCTTGGGCTTGGG...................................................................................................................................................................................................................................2311.00110000000000000000
................CCTCCAAGAACCTGGATGCGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
.....................AAGAACCTGGATGCGGAGCAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
..............................................CGAGGTGGGTA-----G------TG---------ATAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000000100000
.................CTCCAAGAACCTGGATGCGGAGCAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
..............................GATGCGGAGCACATTGCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000000100000
................CCTCCAAGAACCTGGATGCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
............................................TGCGAGGTGGGTA-----G------TT---------T........................................................................................................................................................................................................................................................................................................................................................................................................................................17150.07100000000010000000
droSec2
ATAATTGATGCGCGCTCTTTCAAGAACCTGGATGCGGAGCACATTGCGAGGTAGGTA-----G------TG---------ATAATG-CTAGTG-GT------T-----------------------------G--------------------------GGGCAGTAA----GTGCCAGATGTGAAATGGGTT-TCG-----------------------------------------GGTCGAGTTT--GGTCTCGG-GCTTG------GGCTTGGGT-TGGCCACC----------A-AACT--------T--CTC-GAAACTTTTC--CATTTTCATAAACTTTTCACTTTGCTATAA-A---ACTTGGCGTC-------TCCTC---TTT----TCGG----T---------------GG----------------CTGCCGTCCCCACAGAACCATTCGTCACACACACGGCCACCATTTAACGACAATAATTGCAGTCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............CTCTTTCAAGAACCTGGATGCGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
...ATTGATGCGCGCTCTTTCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
................................................................................................................................................................................................................................................................GG-GCTTG------GGCTTGGGT-TGGCCACC----------...............................................................................................................................................................................................................2411.0010010
dm3
ATAATTGATGCGCGCTCCTCCAAGAACCTGGATGCGGAGCACATTGCGAGGTGGGTA-----G------TG---------ATAATG-GCAGTG-GT------T----------------------T------G--------------------------GGGCAGTAA----GTGCCAGATGTGAAATGGGTT-TCG-----------------------------------------GGTCGAGTTT--GGGCTTG-------------GGCTTGGGC-TGGCCACC----------A-AACT--------T--CTC-GAAACTTTTC--CATTTTCATAAACTTTTCACTTTGCTATAA-A---ACTTGGCGTC-------TCCTC---TTT----TCGG----T---------------GC----------------CTGCCGCCTCCACAGAACCATTCGTCACACACACGGCCACCATTTAACGACAATAATTGCAGTCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................ATGCGGAGCACATTGCGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000011000000000000000000100
...ATTGATGCGCGCTCCTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000010000000000000000000000000000000000000000
................CCTCCAAGAACCTGGATGCGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000010000000000000000000000000000000000
......................AGAACCTGGATGCGGAGCACATTGCGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................ATGTGAAATGGGTT-TCG-----------------------------------------G..........................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..........................................................................................GTG-GT------T----------------------T------G--------------------------GGGCAGTAA----GTGC.........................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCACACACACGGCCACCA.......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................AGAACCTGGATGCGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
................................TGCGGAGCACATTGCGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................GTCGAGTTT--GGGCTTG-------------GGCTTG.....................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................ACTTGGCGTC-------TCCTC---TTT----TCGG----...................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCATTCGTCACACACACGGCCACC........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................ATTGCGAGGTGGGTA-----G------CT---------.........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACACGGCCACCATTT....................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTCACACACACGGCCACCA.......................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TCCAAGAACCTGGATGCGGAGCACATTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................GATGCGGAGCACATTGCGAGGTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
....................CAAGAACCTGGATGCGGAGCACATTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................CCTC---TTT----TCGG----T---------------GC----------------CTGCCGCCTC.......................................................2411.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GCGCTCCTCCAAGAACCTGGATGCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTGGGTA-----G------TG---------ATAATG-GT................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.....................AAGAACCTGGATGCGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
................................TGCGGAGCACATTGCGAGGTGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................CGAGGTGGGTA-----G------TG---------ATAATG-GCA...............................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................GTAA----GTGCCAGATGTGAAATGGG..........................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
....................................................................................................................................G--------------------------GGGCAGTAA----GTGCCAGATGTGAAAT.............................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TGGATGCGGAGCACATTGCGAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........TGCGCGCTCCTCCAAGAACCTGGATGCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCACCATTTAACGACAATAATT.......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCCACCATTTAACGACAATAAT........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AACCTGGATGCGGAGCACATTGCGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
............................TGGATGCGGAGCACATTGCGAGGTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.....TGATGCGCGCTCCTCCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..........................................................................................................................................................................................ATGGGTT-TCG-----------------------------------------GGTCGAGTTT--...............................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................GGATGCGGAGCACATTGCGAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................GTT-TCG-----------------------------------------GGTCGAGTTT--GGG............................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CCAAGAACCTGGATGCGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
................................................................................................................................................................................................................................................................................................................................................................................TTGGCGTC-------TCCTC---TTT----TCGG----T---------------...................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TTGATGCGCGCTCCTCCAAGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..............................GATGCGGAGCACATTGCGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................ATAA-A---ACTTGGCGTC-------TCCTC---TTT----TCG........................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................GGCAGTAA----GTGCCAGATGTGA................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CCTCCAAGAACCTGGATGCGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................CAAGAACCTGGATGCGGAGCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000
droEre2
ATAATTGATGCGCGCTCCTCCAAGAACCTGGATGCGGAGCACATTGCGAGGTGGGTA-----G------T--------------------------------------------------------------------------------------------------------GGCAGATGTGAAATGGGTT-TCG-----------------------------------------GGTCGAGTTT--GTTCCCGG-------------GCTTGGGT-TGGCCGCC----------A-AACT--------T--CTC-GAAACTTTTC--CATTTTCATAAACTTTTCACTTTGCTATAA-A---ACTTGACGTC-------TCC------------------------------------------------------------TCCCCACAGAACCATTCGTCACACACACGGCCACCATTTAACGACAATAATTGCAGTCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................ACTTGACGTC-------TCC------------------------------------------------------------TCCCCACA...................................................2113.0030000120
..............................................................................................................................................................................................................................................................................................................................................................................ACTTGACGTC-------TCC------------------------------------------------------------TCCCCACAG..................................................2212.0022000000
...............................................................................................................................................................................................................................................................................................................................................................................CTTGACGTC-------TCC------------------------------------------------------------TCCCCACAGT.................................................2212.0020000020
ATAATTGATGCGCGCTCCTCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020010010
...................CCAAGAACCTGGATGCGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020001010
...............................................................................................................................................................................................................................................................................................................................................................................CTTGACGTC-------TCC------------------------------------------------------------TCCCCACAG..................................................2111.0010010000
...........................................................................................................................................................................................................................................................................................................................................................TCACTTTGCTATAA-A---ACTTGACGTC-------..........................................................................................................................2511.0010000100
...............................................................................................................................................................................................................................................................................................................................................................................CTTGACGTC-------TCC------------------------------------------------------------TCCCCAC....................................................1911.0010000010
...................................................................................................................................................................................................................................................................................................................................................................CTATAA-A---ACTTGACGTC-------TCC------------------------------------------------------------TCCCCACAGA.................................................3011.0010000001
................................................................................................................................................................................................................................................................................................................................................................................TTGACGTC-------TCC------------------------------------------------------------TCCCCACAG..................................................2011.0010000010
..........................CCTGGATGCGGAGCACATTGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
...ATTGATGCGCGCTCCTCCAAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
droYak3
ATAATTGATGCGCGCTCCTCCAAGAACCTGGATGCGGAGCACATTGCGAGGTGCGTA-----G------TG---------GTTGTG-GTAGTGGGT------T------------------------------------------------------------AAAAA----GTGCCAGATGTGAAATGGGTT-TCA-----------------------------------------AGTTGGGTTT--GGGTTCG-----------------------------------------G-AACT--------T--CTC-GAAACTTTTC--CATTTTCATAAACTTTTCACTTTGCTATAA-A---ACTTGCCGTC-------TCCTC---TTC----TCGG---------------------------------------TGCCGTACCCACAGAACCATTCGTCACACACACGGCCACCATTTAACGACAATAATTGCAGTCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................CCTCCAAGAACCTGGATGCGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00210000010000
.....................AAGAACCTGGATGCGGAGCACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000
.......................................................................................................................................................................................................................................................................................................................................................................AA-A---ACTTGCCGTC-------TCCTC---TTC----TCGG---------------------------------------TGCC............................................................2911.00100000010000
.....................................................CGTA-----G------TG---------GTTGTG-GTAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................CTC---TTC----TCGG---------------------------------------TGCCGTACCCACAG..................................................2411.00101000000000
.........................ACCTGGATGCGGAGCACATTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000
droEug1
ATAATTGATGCGCGTTCCACCAAGAACCTGGATGCGGAGCACATTGCGAGGTGGGTC-TGG-G---------TC-TGGGA-TA-------GCGGGT-----------------------------------------------------------------------------TGGCAAATGTGAAATGGGTTTTCG-----------------------------------------GGTCGAGTTT--CGG--------------------TTGGGT-TGGC---C----------A-AACT--------T--CTC-AAAACTTTTC--CATTTTCATAAACTTTTCACTTTGCAATAA-A---ACTTGCTGTC-------TCCTC---TGC----TCG---------------------------------------CTTCCGTCCCCACAGAACCATACGTCACACACACGGCCACCATTTAACGACAATAATTGCAGTCTSizeHit CountTotal NormTotal
No Reads
droBia1
ATAATTGATGCGCGTTCCACCAAGAACCTGGATGCGGAGCACATTGCCAGGTGGGTA-----A------T----------------------GGGT-----------------------------------------------------------------------------TGGCCGCTGTGAAATGGGTT-CCG-----------------------------------------GGACGGGTTT-------------------------TTGGGC-T-GC---CAAACTTACG-G-AAAC--------TTTTTA-ACAACTTTTC--CATTTTCATAAACTTTGCACTTTGCCATAA-A---ACTTGCC-------------TC----------------------------------------------------------TGCCCACAGAACCATACGTCACACACACGGCCACCATTTAACGACAATAATTGCAGTCTSizeHit CountTotal NormTotal
No Reads
droTak1
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCAGATGTGAAATGGGTT-TAG-----------------------------------------GGTCGAGTTT--------------------------TGGGT-TGGC---CAAACTTACC-A-AACT--------TCTCTC-AAAACTTTTC--CATTTTCATAAACTTTTCACTTTGCTATAA-A---ACTTGATGAC-------CCCCCTCTTTC----T-----------------------CC----------------CTTTC-TCCTTCCAGAACCATACGTCACACACACGGCCACCATTTAACGACAATAATTGCAGTCTSizeHit CountTotal NormTotal
No Reads
droEle1
ATAATTGATGCGCGCTCCACTAAAAACCTGGATGCGGAGCACATTGCGAGGTGGGTA-----G------TGG--------ATAGTGGGTAGTG-GG------T----------------------T------GTGGGTGATGCGTAAAGG---TCACCGGG---GTAATGGGTTGCCCGATGTGAAATGGGTT-CCG-----------------------------------------GGTCGAGTTT--------------------------CGGGT-TGGC---C----------A-AACT--------T--CACAAAAACTTTTT--CATTTTCATAAACTTTTCACTTTGCAATAAAA---ACTTGCTGTC-------TTC----------------------------------------------------------GTTCCCCACAGAACCATACGTCACACACACGGCCACCATTTAACGACAATAATTGCAGTCTSizeHit CountTotal NormTotal
No Reads
droRho1
ATAATTGATGCGCGTTCCACGAAGAACCTGGATGCGGAGCACATTGCGAGGTGGGTA-----G------TGG--------GTAAT-------GGGT------T----------------------------------------------------------------------TGCGAGTTGTGAAATGGGTT-TCG-----------------------------------------GGTTGAGTTTCAAGTTT-------------------CGGGT-CGGT---C----------A-AACT--------T--CTC-AAAACTTTTC--CATTTTCATAAACTTTTCACTTTGCAATAA-A---ACTTGCTGTC-------TCCGC---ACT----TCG---------------------------------------TTGCCGTCCCCACAGAACCATACGTCACACACACGGCCACCATTTAACGACAATAATTGCAGTCTSizeHit CountTotal NormTotal
No Reads
droFic1
ATAATTGATGCACGCTCCACCAAGAACCTGGACGCCGAGCACATTGCGAGGTGGGTTTCA-------------------------------------------CA-AAGAGAGGTTTTTATGGGTTTTTTCCGGGGGGGAGGGGTAGA-----------------TGATGTCCTGCCCAATGTGAAATGGGTT-TCG-----------------------------------------GGTCGAGTTT-------------------------TTGGGTTTGGC---CA---------A-AACT-TCTCGCCT--CTC-GAAACTTTTC--CATTTTCATAAACTTTTCACTTTGCCATAA-A---ACTTGCCGC----TGTCGCCTC---TTT----T------------------------------------------CTCACTCCCAACAGAACCATACGTCACACACACGGCCACCATTTAACGACAATAATTGCAGTCTSizeHit CountTotal NormTotal
No Reads
droKik1
ATAATTGATGCTCGCTCCGCCAAGAATCTTGATGCAGAGCACATTGCGAGGTGGGTT-TGGGG---------TTTGGGGT-T---------------------------------------------------TGG------------GG---TTCCTGG---AGTAATGGGTTGCCCGAGTTGAAATGGGTT---------------------------------------------------------------------------------CGGGT-TGGC---CGA--------A-AAGT--------T--TAC-AAAACTTTTC--CATTTTCATAAACTTTTCACTTTGCCATAA-A---ACTTGATCTT----------------AC----T-----------------------CTCTTTCTGTCTTTGGTACTCCTGCTCCTCCAGAACCATACGTCACACACACGGCCACCATTTAACGACAATAATTGCAGTCTSizeHit CountTotal NormTotal
No Reads
droAna3
ATAATTGATGCCCGTTCCTCCAAGAATCTGGATGCGGAGCATATTGCGAGGTGGGTTCTCGGCTGGTCAT--------------------------------------------------------------------------------------------------------GGTCGCTATGAAATGGGTT-TTGTTTTTTTGGGTTTAGGCTTCT--------------------GGTTGAGTTTTTTGGGTCGG-GT-TG------GG--TCGGT-TGGG---C----------A-AAGT--------T--TTT-AAAACTTTTC--CATTTTCATAAACTTTTCACTTTGCCATAA-A---ACTTGCTGTC-------TCCTC---C--GC--------------------------------------------TTCTGCTCCCCACAGAACCATACGTCACACACACGGCCACCATTTAACGACAATAATTGCAGTCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................TCGG-GT-TG------GG--TCGGT-TGGG---C----------A-.............................................................................................................................................................................................................2113.003000102
.........................................................................................................................................................................................................................................................TTGGGTCGG-GT-TG------GG--TCGGT-TGGG---..........................................................................................................................................................................................................................2412.002000011
.........................................................................................................................................................................................................................................................TTGGGTCGG-GT-TG------GG--TCGGT-TG...............................................................................................................................................................................................................................2212.002000020
.........................................................................................................................................................................................................................................................TTGGGTCGG-GT-TG------GG--TCGGT-TGGG---C----------...............................................................................................................................................................................................................2511.001000010
.........................ATCTGGATGCGGAGCATATTGCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
.........................................................................................................................................................................................................................................................TTGGGTCGG-GT-TG------GG--TCGGT-TGGG---C----------A-.............................................................................................................................................................................................................2611.001000001
ATAATTGATGCCCGTTCCTCCAAGAATCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001010000
....................CAAGAATCTGGATGCGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACCATTTAACGACAATA..........1911.001010000
...........................CTGGATGCGGAGCATATTGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
............................TGGATGCGGAGCATATTGCGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
.................CTCCAAGAATCTGGATGCGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
....................................................................................................................................................................................................................................................GTTTTTTGGGTCGG-GT-TG------GG--T......................................................................................................................................................................................................................................2111.001000010
..........................................................................................................................................................................................................................................................TGGGTCGG-GT-TG------GG--TCGGT-TGGG---..........................................................................................................................................................................................................................2311.001000001
..........................................................................................................................................................................................................................................................TGGGTCGG-GT-TG------GG--TCGGT-TGG..............................................................................................................................................................................................................................2211.001000001
................CCTCCAAGAATCTGGATGCGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
....TTGATGCCCGTTCCTCCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
droBip1
ATAATTGATGCCCGTTCCTCCAAGAATCTGGATGCGGAGCATATTGCGAGGTGGGTTCTCCGG--------------------------------------------------------------------------------------------------------------TG----CTATGAAATGGGTT-TTGTT---TTGGGTTTAAGCTTTGGGTTCAGGTTTTTTGTTTTGGGTCGAGT-----------------------------CGGT-TGGG---C----------A-AAGT--------T--TTT-GAAACTTTTC--CATTTTCATAAACTTTTCACTTTGCCATAA-A---ACTTGCTGTC-------TCCTC---C--GC--------------------------------------------TTCTACTCCCCACAGAACCATACGTCACACACACGGCCACCATTTAACGACAATAATTGCAGTCTSizeHit CountTotal NormTotal
No Reads
dp5
ATAATTGATGCGCGCTCCTCGAAAAATCTAGATGCCGAGCATATTGCAAGGTAAGATATGCGG---------TT-CGGGT-T---------CGGTTCGGCAACCA-AAAATATATCTACATGAGT--------TGG------------GTCTCTCTCTCG---TCTTAGGGGCTGCTCAAGTTTATAT-----------------------------------------------------A----------------AGT------------T------TGGT---CGA--------A-AAGT--------T--TTC-CCAACTTTTT--CATTTTGATAAACTTTACACTTTGCTATAA-A---ACTTGCTT-C---TCTCTCTCT---ATC----T-----------------------CT----------------CTCTCTCCTCAACAGAACAATACGTCATACACATGGACACCATTTAACGACAATAATTGCCGTCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
ATAATTGATGCGCGCTCCTCGAAAAATCTAGATGCCGAGCATATTGCAAGGTAAGATATGCGG---------TT-CGGGT-T---------CGGTTCGGCAACCA-AAAATATATCTACATGAGT--------TGG------------GTCTCTCTCTCG---TCTTAGGGGCTGCTCAAGTTTATAT-----------------------------------------------------A----------------AGT------------T------TGGT---CGA--------A-AAGT--------T--TTC-CCAACTTTTT--CATTTTGATAAACTTTACACTTTGCTATAA-A---ACTTGCTT-C---T---CTCTC---T------------------------------CT----------------CTCTCTCCTCATCAGAACAATACGTCATACACATGGACACCATTTAACGACAATAATTGCCGTCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
ATAATTGATGCGCGCTCCTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..............................GATGCCGAGCATATTGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
droWil2
ATAATTGATGCGCGCTCCACCAAAAATCTTGATGCCGAGCACATTGCAAGGTGAGAG-----------------------AAAATT-TAAG-------------------------C-------------------------------------------------------------------AAATGGG------------------------------------------------------------------------------------------------C----------A-AAGT--------T--TTT-C---CTTTTCGGCATTCACTCAAACTTTTTACTTTACTCCGC------------------------------C-------CA-----CCCTCGTCCTACCGCATCCTCCCTGTCCTCTGTCTTCTGTTTCTTGTAGAACTATACGTCACACCCACGGACATCATTTAACGACAATAATTGCCGTCTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGTCACACCCACGGAC...........................1913.00330000
.....................AAAAATCTTGATGCCGAGCAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
..........................................................................................G-------------------------C-------------------------------------------------------------------AAATGGG------------------------------------------------------------------------------------------------C----------A-AAGT--------T--TTT-C---CTTTTCG...............................................................................................................................................................................2711.00100010
..............................GATGCCGAGCACATTGCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTATACGTCACACCCACGGA............................2311.00101000
........................AATCTTGATGCCGAGCACATTGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000
.............................................................................................................................................................................................................................................................................................................AGT--------T--TTT-C---CTTTTCGGCATTCACT......................................................................................................................................................................2411.00100010
.....................AAAAATCTTGATGCCGAGCACATTGCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTATACGTCACACCCACGGAC...........................2411.00101000
........................AATCTTGATGCCGAGCACATTGCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
droVir3
ATAATTGATGCGCGCTCCACAAAAGGTCTCGATGCCGAGCACATTGCAAGGTGAGTG-----C------TGG------------------------------CCAA-CGTTGCGTATACGTGA----------------------------------------------------------------------------------------------------------TGT-------------------------------------------------------C---------CCAACAGCAACAGCAG--CGA-AAAACTTTAC--TA-------AAACTTATCACTT------AA-ATTGATTTGCCATC-------TCCCA---TTT----CCCA----T---------------TT----------------CCCACTGCCCACTAGAACAATACGTCACACACATGGACATCATTTAACGACAATAATTGCCGTCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................AAAAGGTCTCGATGCCGAGCACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACGTCACACACATGGAC...........................2011.001010000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACACATGGACATCATTTAACGAC..............2611.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATACGTCACACACATGGAC...........................2111.001100000000000000000000000000000000000000000000000000000000000000
............................................................................................................GTTGCGTATACGTGA----------------------------------------------------------------------------------------------------------TGT-------------------------------------------------------C---------CCA.............................................................................................................................................................................................................2211.001000000000000000010000000000000000000000000000000000000000000000
droMoj3
ATAATTGATGCGCGCTCCACAAAGGGTCTCGACGCCGAGCACATTGCAAGGTGAGTG-CG-----------G------------------------------CGTA-CGTTGCGTATACGTGA----------------------------------------------------------------------------------------------------------TG----------------------------------------------------G---C----------A-AACT--------CTTGCC-GAAACT--------------------TTGCACTTTAAC-------TGATGCGA--ACTTCTTCACACAT---ATT----TCGCTTCAT---------------TC----------------T---C-CACTGCCAGAACAATACGCCACACACACGGACATCACTTAACGACAATAATTGCCGTCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................ACAAAGGGTCTCGACGCCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
................................CGCCGAGCACATTGCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
..................................................GTGAGTG-CG-----------G------------------------------CGTA-CGTTGCGTA.....................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.................................................................................................................................................................................................................................................................................................................................AACT--------------------TTGCACTTTAAC-------TGAT.........................................................................................................................................2011.001100000
..................................................GTGAGTG-CG-----------G------------------------------CGTA-CGTTGCGTATACG.................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
droGri2
ATAATTGATGCGCGCTCCACAAAGGGTCTCGATGCCGAGCACATTGCAAGGTGAGTG-TG-----------T------------------------------CAAG-CATTGCGTATACGTGA----------------------------------------------------------------------------------------------------------TGTGATTTCTCTA----------------AAC------------T------TGGT---TGC-------CCCAAGG-----------------------------CAACAATGAACTTTCCACTTA------------ACTGGCCTTC---A---ATTTC---T--GCTTCTG----------------------C----------------TTCCATCTTTATTAGAGCCATACGTCACACACATGGACATCATTTAACGACAATAATTACGGTCTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 06:15 PM