dsi_15008

AGGACAGCCAGCACATCGGCTGTGGCTACAACAACGCGGCCCGTCCCTTCGTGAGTGTACTAATTTGCAATCACGCAGAGTATAGCCCCATGCCCGTCCTCGCACCACATCATTTATAAAATTCATAAACTGGCAGCCCAAAGTTGGGAATGCGGAAAGTTTTAGTGGCCCAGCTGATGCTGACGTCCTGATGATGACCAATGATGTTGATAGTTAGTCCTTGACTGGCCGCACTCCGCACTCCACACCC ************************************************(((((((((((...((((......))))))))))((.....)).....)))))....((((((.............(((((.(((.((((....))))..)))....)))))(((.(((.((((....))))..))))))))))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	M023 head	M024 male body	M025 embryo	GSM343915 embryo	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries
.........AGCACATCGGCTGTGGCT...............................................................................................................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0	0	0
.......CCAGCACATCGGCTGTGGCTT..............................................................................................................................................................................................................................	21	1	1	1.00	1	0	0	0	1	0	0	0	0
..........GCACATCGGCTGTGGCTA..............................................................................................................................................................................................................................	18	0	1	1.00	1	0	0	1	0	0	0	0	0
.............................AACAACGCGGCCCGTCCCTT.........................................................................................................................................................................................................	20	0	1	1.00	1	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................TCCTGATGATGACCAATGATGT...........................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0
............................................................................................CCCGTCCTCGCGCCA...............................................................................................................................................	15	1	3	0.67	2	0	0	0	0	0	2	0	0
......................................................................................................................................................................................................CAATGATGTTGACAGT....................................	16	1	3	0.33	1	1	0	0	0	0	0	0	0
..............................................................................................................................................................................TGCTTTTGACGTCCTGATGA........................................................	20	3	5	0.20	1	0	0	0	0	0	0	1	0
......................................................................................................................................................................................ACGTCCTGATGTTGA.....................................................	15	1	6	0.17	1	0	0	0	0	0	1	0	0
.............................................................................................................................................................................................TATGATCACTAATGATGTT..........................................	19	3	20	0.05	1	0	0	0	0	0	1	0	0
..........................TACAACAACTCGGCTGGT..............................................................................................................................................................................................................	18	3	20	0.05	1	0	0	0	0	0	0	0	1

TCCTGTCGGTCGTGTAGCCGACACCGATGTTGTTGCGCCGGGCAGGGAAGCACTCACATGATTAAACGTTAGTGCGTCTCATATCGGGGTACGGGCAGGAGCGTGGTGTAGTAAATATTTTAAGTATTTGACCGTCGGGTTTCAACCCTTACGCCTTTCAAAATCACCGGGTCGACTACGACTGCAGGACTACTACTGGTTACTACAACTATCAATCAGGAACTGACCGGCGTGAGGCGTGAGGTGTGGG ************************************************(((((((((((...((((......))))))))))((.....)).....)))))....((((((.............(((((.(((.((((....))))..)))....)))))(((.(((.((((....))))..))))))))))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs
..................................................................................................................................................................ACCACCGGGTCGACTAGGACTG..................................................................	22	2	1	1.00	1	1	0	0	0
...........................................AGGGAAGCACTCACATGATTA..........................................................................................................................................................................................	21	0	1	1.00	1	0	1	0	0
.....ACGGTCGTGTAGCCGATACAG................................................................................................................................................................................................................................	21	3	5	0.20	1	0	0	1	0
........................................................................................................................................................................GGGTCGACTAGGACTGC.................................................................	17	1	8	0.13	1	1	0	0	0
..........................................................................................................................................................................................GGACTGCTACTGGTT.................................................	15	1	9	0.11	1	0	1	0	0
.........................................GCAGGGAAGCACTTGTATG..............................................................................................................................................................................................	19	3	10	0.10	1	0	1	0	0
.......GGTCGTGTAGTCGATACAGA...............................................................................................................................................................................................................................	20	3	12	0.08	1	0	0	1	0
........................................................................................................................................................................AGGTCGACTACGACTG..................................................................	16	1	15	0.07	1	1	0	0	0
.......................................GGGCAGGGAAGCCTTC...................................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	1
.CCTGTCGGTTGTGGAGCAG......................................................................................................................................................................................................................................	19	3	20	0.05	1	1	0	0	0

Species	Coordinate	ID	Alignment
droSim2	2r:12336485-12336734 -	dsi_15008	AGGACAGCCAGCACATCGGCTGTGGCTACAACAACGCGGCCCGTCCCTTCGTGAGTGTACTAATTTGCAATCAC---------------------------------------------------------------------------------GCAGAGTATAG---CCC------------------------------------------------------CATG---CC---------CGTCCTCG-----------------------------------------------------------------------------------------C---ACCACATCATTTATAAAATT-CATAAACTG---GCAGC----------------CCAAA-G-TTGGGAATGCGGAAAGTTTTAGT-GG--------------------------C-------------------------------------------CCAGCTGATGCTGAC-----------GTCCTGATGATGACCAATGATGTTGATAGTTAG--TCCT-TGACTGGCCGCACTCCGCACT------------------------------CCACACCC
droSec2	scaffold_1:9164014-9164256 -		AGGACAGCCAGCACATCGGCTGTGGCTACAACAACGCGGCCCGTCCCTTCGTGAGTGTACTAATTTGCAATCAC---------------------------------------------------------------------------------GCAGAGTATAG---CCC------------------------------------------------------CCTT---CC---------CCTGCTCG-----------------------------------------------------------------------------------------C---ACCACATCATTTATAAAATT-CATAAACTG---GCAGC----------------CCAAA-G-TTGGGAATGCGGAAAGTTTTAGT-GG--------------------------C-------------------------------------------CCAGCTGATGCCGAC-----------GTCCTGATGATGACCAATGATGTTGATAGTTAG--TCCT-TGACTGGCCGCACT------------CC------------------A-------CACCC
dm3	chr2R:11670396-11670642 -		AGGACAGCCAGCACATCGGCTGTGGCTACAACAACGCGGCCCGTCCCTTCGTGAGTGTACTAATTTGCAATCAC---------------------------------------------------------------------------------GCAGAGTATAG---CCC------------------------------------------------------CATG---CC---------CGTCCTCG-----------------------------------------------------------------------------------------C---ACCACATCATTTATAAAATT-CATAAACTG---GCAGC----------------CCAAA-G-TTGGGAATGCGGAAAGTTTTAGT-GG--------------------------C-------------------------------------------CCATCTGATGCTGAC-----------GTCCTGATGATGACCAATGATGTTGATAGTTAG--TCCT-TGACTGGCCGCACT------------CC------------------ACACCCCACA---
droEre2	scaffold_4845:14192474-14192709 +		AGGACAGCCAGCACATCGGCTGTGGCTACAACAACGCGGCCCGTCCCTTCGTGAGTGTACTAATTTGCAATCAC---------------------------------------------------------------------------------GCAGAGTATAT---CCC------------------------------------------------------CATG---CC---------CATCCTCG-----------------------------------------------------------------------------------------C---ACCACATCATTTATAAAATT-CATAAACTG---GCAGC----------------CCAAA-G-TTGGGAATGCGGAAAGTTTTAGT-GG--------------------------C-------------------------------------------CCAGCTGATGCTGAC-----------GTCCTGATGATGACCAATGATGTTGATAGTTAG--TCCT-TGACTGCCCAC--------------------------------------------ACTC
droYak3	2R:17316516-17316775 +		AGGACAGCCAGCACATCGGCTGTGGCTACAACAACGCGGCCCGTCCCTTCGTGAGTGTACTAATTTGCAATCAC---------------------------------------------------------------------------------GCAGAGTATAGT---CC-----------------CATACCC------------------------------CATA---CC---------CATCCTCG-----------------------------------------------------------------------------------------CACTACCACATCATTTATAAAATT-CATAAACTG---GCAGC----------------CCAAA-G-TTGGGAATGCGGAAAGTTTTAGT-GG--------------------------C-------------------------------------------CCAGCTGATGCTGAC-----------GTCCTGATGATGACCAATGATGTTGATAGTTAG--TCCT-TGACTGCCCACACTCAACACT------------------------------CCTCACCT
droEug1	scf7180000409672:569883-570134 -		AGGACAGCCAGCACATCGGCTGTGGCTACAACAACGCTGCCCGTCCCTTCGTAAGTGTACTAATTTGCAATCAC---------------------------------------------------------------------------------GCAGAGAGTAGTATCCC-----------------C-----------------------AA------AC-TCC------CC---------TATCCTTG-----------------------------------------------------------------------------------------CAACACCACATCATTTATAAAATT-CATAAACTG---GCAGC----------------CCAAA-G-TTGGGAATGCGGAAAGTTTTAGT-GG--------------------------C-------------------------------------------CCAGCTGATGCTGAC-----------GTCCTGATGATGACCAATGATGTTGATAGTTAG--TTCT-AGACCGACCAC--------CC-CAT-----------------------------CACCG
droBia1	scf7180000302292:3987680-3987923 +		AGGACAGCCAGCACATCGGCTGTGGCTACAACAACGCGGCCCGTCCCTTCGTGAGTGTACTAATTTGCAATCAC---------------------------------------------------------------------------------GCAGAGTATATG---AC-----------------CATCC----------------------------------------C---------CCA-CCCG-----------------------------------------------------------------------------------------C---ACCACATCATTTATAAAATT-CATAAACTG---GCAGC----------------CCAAA-G-TTGGGAATGCGGAAAGTTTTAGT-GG--------------------------C-------------------------------------------CCAGCTGATGCTGAC-----------GTCCTGATGATGACCAATGATGTTGATAGTTAG--TTCT-AGACCGCCCACCCT------------CC----------------CCA-------CACTC
droTak1	scf7180000415241:9218-9452 +		AGGACAGCCAGCACATCGGCTGTGGCTACAACAACGCGGCCCGTCCCTTCGTGAGTGTACTAATTTGCAATCAC---------------------------------------------------------------------------------GCAGAGTAGAT---CCC------------------------------------------------------CAAA---CC---------CATCCCTG-----------------------------------------------------------------------------------------C---ACCACATCATTTATAAAATT-CATAAACTG---GCAGC----------------CCAAA-G-TTGGGAATGCGGAAAGTTTTAGT-GG--------------------------C-------------------------------------------CCAGCTGATGCTGAC-----------GTCCTGATGATGACCAATGATGTTGATAGTTAG--TTCT-AGACCGCCCACACT---------------------------------------------
droEle1	scf7180000491107:650506-650728 -		AGGACAGCCAGCACATCGGCTGTGGTTACAACAACGCGGCCCGTCCCTTCGTAAGTGTACTAATTTGCAATCAC---------------------------------------------------------------------------------CCGGAGTATTT-------------------------------------------------------------------CC---------CATCCCTG-----------------------------------------------------------------------------------------CCCCACCACATCATTTATAAAATT-CATAAACTG---GCAGC----------------CCAAA-G-TTGGGAATGCGGAAAGTTTTAGT-GG--------------------------C-------------------------------------------CCAGCTGATGCTGAC-----------GTCCTGATGATGACCAATGATGTTGATAGTTAG--TTCT-AGAATG-----------------------------------------------------
droRho1	scf7180000779911:441209-441456 +		AGGACAGCCAGCACATCGGCTGTGGCTACAACAACGCGGCCCGCCCCTTCGTGAGTGTACTAATTTGCAATCAC---------------------------------------------------------------------------------GCAGAGTATAT---CACCCACT-------------------------------------------------CTTGC--CC---------CATCCCTG-----------------------------------------------------------------------------------------T---GCCACATCATTTATAAAATT-CATAAACTG---GCAGC----------------CCAAA-G-TTGGGAATGCGGAAAGTTTTAGT-GG--------------------------C-------------------------------------------CCAGCTGATGCTGAC-----------GTCCTGATGATGACCAATGATGTTGATAGTTAG--TTCT-AGAACGCCATC--------CC-CCT-----------------------------TACCC
droFic1	scf7180000453809:165557-165812 -		AGGACAGCCAGCACATCGGCTGTGGCTACAACAACGCGGCCCGTCCCTTCGTAAGTGTACTAATTTGCAATCACGA------------------------------------------------------TGAGATGAGGAGA------------GGAGAGTAGAG--TCCT------------------------------------------------------CTTGCCTCCCAT------CAT-CCTG-----------------------------------------------------------------------------------------C---ACCACATCATTTATAAAATT-CATAAACTG---GCAGG----------------CCAAA-G-TTGGGAATGCGGAAAGTTTTAGT-GG--------------------------C-------------------------------------------CCAGCTGATGCTGAC-----------GTCCTGATGATGACCAATGATGTTGATAGTTAG--TTCC-AGG---------------ACT-----CC------------------A-------CTCCC
droKik1	scf7180000302682:1847411-1847679 -		AGGACAGCCAGCACATCGGCTGTGGCTACAACAACGCGGCCCGTCCCTTCGTAAGTGTACTAATTTGCAATCAC---------------------------------------------------------------------------------GCAAAGTATAA---CTCCCTC-----------------CCTCAT-----------ACCAAGTCACACCATG--------CCATCATGCCCATCCCTT-----------------------------------------------------------------------------------------G---GTCACATCATTTATAAAATT-CATAAACTG---GCAAC----------------CCGAA-G-TTGCGAATGCGGAAAGTTTTAGT-GG--------------------------C-------------------------------------------CCAGCTGATGCTGAC-----------GTCCTGATGATGACCAATGATGTTGATAGTTAG--TTCT-AGACCGCTATC---C-CAGCC-------------------------------------C
droAna3	scaffold_13266:12530940-12531266 +		AGGACAGCCAGCACATCGGCTGTGGCTACAACAACGCGGCCCGTCCCTTCGTGAGTGTTCTAATTTGCAATCATGG------------------------------------------------------GGACACCGGGAGAAAGC-TCTTTGTGGAGAG----------------------------------------------------------------------------------------------TCCCT--TGGGAAAACTA----TG-GCGATTAGGGTGGGAGCTACTTTCTCTCGGTGTACACGGAGAACCCGGGGTATCTAGAACTC---ACCACATCATTTATAAAATT-CATAAACTG---GCAAC----------------CCAAA-G-TTGGGAATGCGGAAAGTTTTAGT-TGCCACA---------------CAACCGC-------------------------------------------CCAGCTGATGCTGAC-----------GTCCTGATGATGACCAATGATGTTGATAGTTAG--TTTC-AGG---------------GCCCC--------------------------------CTTC
droBip1	scf7180000396372:31038-31362 +		AGGACAGCCAGCACATCGGCTGTGGTTACAACAACGCGGCTCGTCCCTTCGTGAGTGTTCTAATTTGCAATCATGG------------------------------------------------------GGACACCGGGAGAAAGCCTCTTTGTGGAGAG----------------------------------------------------------------------------------------------TCCCT--TGGGAGAACAA----TGGGCGATTGGGGCGGAAGCTACTTTCTCTCGGTGTAGT---------CGGGGTATCTAGTGCTC---ACCACATCATTTATAAAATT-CATAAACTG---GCAAC----------------CCAAA-G-TTGGGAATGCGGAAAGTTTTAGT-TGCCACA---------------CAACCGC-------------------------------------------CCAGCTGATGCTGAC-----------GTCCTGATGATGACCAATGATGTTGATAGTTAG--TTTC-TGA---------------GCCCCCTTCC------------------CCAC---------
dp5	3:19514250-19514627 +		AGGACAGCCAGCACATTGGCTGCGGCTACAACAACTCGGCCCGTCCATTTGTAAGTTTACTAATTTGCAATCAT---------------------------------------------------------------------------------ACAAAGTGTAGCAC---ACATTTGCGGG-CAGCCCATCCCACATCCCCCTTCCACAGCAA------ACATCC------CA---------CATCCTAGGAGTCCCTCCTGGGAGCAGGAGTGTTGGCCGA-GGTGGTG------------------------------------------------------GAACATCATTTATAAAATT-CATAAACTGCAGGGAGC----------------CCAAA-ACTTGGGAGTGCTGAAACTTTTAGGTGG-AACAACCACTGCCGTCAGGCTACCAC-------------------------------------------ACAGCTGATGCTGATGCTGGTGATGTGTCCTGATGATGACCAATGATGTTGATAGTTGGAATCCT-T---------C---C-AAGCACGGTTCCCCCTCCCGCTCCGAGGA----C---------
droPer2	scaffold_37:516090-516467 +		AGGACAGCCAGCACATTGGCTGCGGCTACAACAACTCGGCCCGTCCATTTGTAAGTTTACTAATTTGCAATCAT---------------------------------------------------------------------------------ACAAAGTGTAGCAC---ACATTTGCGGG-CAGCCCATCCCACATCCCCCTTCCACAGCAA------ACATCC------CA---------CATCCTAGGAGCCCCTCCTGGGAGCAGGAGTGTTGGCCGA-GGTGGTG------------------------------------------------------GAACATCATTTATAAAATT-CATAAACTGCACGGAGC----------------CCAAA-ACTTGGGAGTGCTGAAACTTTTAGGTGG-AACAACCACTGCCGTCAGGCTACCAC-------------------------------------------ACAGCTGATGCTGATGCTGGTGATGTGTCCTGATGATGACCAATGATGTTGATAGTTGGAATCCT-T---------C---C-AAGCACGGTTCCCCCTCCCGCTCCGAGGA----C---------
droWil2	scf2_1100000004512:912843-913060 +		AGGATAGCCAACACATTGGCTGTGGCTATAACAACTCGGCTCGTCCATTTGTAAGTTAACTAATA----ATGTTGT--A---GTATACTTTAGGGGAGGA------------------------------TGGGATAAAGAG-------------AAAGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGAATCATTTATAATATT-CATAAACTG---CTTGTGTTCTGGTTGAGAAATT---------------------------------------------------------------------------------------------------------------CCCTAAA-----------AACTTGCTGATGACCAATGATGCTGATAGTTAG--TCA--------------------GCT-----C---------C-----TGACA-------CATTT
droVir3	scaffold_12823:1394608-1394818 +		CGGACAGCCAGCACATTGGTTGTGGCTACAACAACTCGGCGCGTCCATTTGTAAGTCAACTAATTTGAAATCATAC--A--CGCACACACAGAGGGAGAAAGGAAGAGAGAGAGA------GCTGGCAAA----------------------------ATGTGTAGCAT---ACATTTGTGGG-CAA--------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGCATCATTTATAAAATT-TATAAACTC---TCAACGT----GTTGG-----CCAAA-A-CTTAAAATGTTGCAGGTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6496:507295-507378 -		CCGATAGCCAGCATATTGGCTGCGGCTACAACAACTCGGCGCGTCCATTTGTAAGT-TACAAATACATGAACAG---------------------------------------------------------------------------------AGAGAGCGTAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_15245:5851638-5851984 -		AGGATAGCCAGCACATTGGCTGTGGCTACAACAACTCGGCTCGTCCATTTGTAAGTCAACTAATTTGCAATCACAAACACCCGCACACACACACACACACACACACACAGACACACGCATGGTTGGCGGA------------A------------TGT--GTGTGGCAT---ACATTTGTGGGGCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------CA-ACAATCATTTATAAAATTTTATAAACTC---TCAAC----TGGTTGA-----CCAAAAACTT---------AAAAGTTCTTGA-GG--------------------------CACGTTTTTACAAGCTGGCATTAGTCCGCACTCCGCCCACAATTACAACTGACACTGAC-----------GTGCTG---ATGACCAATGATGTTGATAGTTGG--TCTCCAGG--GGAAA-------AGCT-----C---------CTCTGATGACA-------CATTC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AGGACAGCCAGCACATCGGCTGTGGCTACAACAACGCGGCCCGTCCCTTCGTGAGTGTACTAATTTGCAATCAC---------------------------------------------------------------------------------GCAGAGTATAG---CCC------------------------------------------------------CATG---CC---------CGTCCTCG-----------------------------------------------------------------------------------------C---ACCACATCATTTATAAAATT-CATAAACTG---GCAGC----------------CCAAA-G-TTGGGAATGCGGAAAGTTTTAGT-GG--------------------------C-------------------------------------------CCAGCTGATGCTGAC-----------GTCCTGATGATGACCAATGATGTTGATAGTTAG--TCCT-TGACTGGCCGCACTCCGCACT------------------------------CCACACCC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.........AGCACATCGGCTGTGGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......CCAGCACATCGGCTGTGGCTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GCACATCGGCTGTGGCTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................AACAACGCGGCCCGTCCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGATGATGACCAATGATGT............................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

AGGACAGCCAGCACATCGGCTGTGGCTACAACAACGCGGCCCGTCCCTTCGTGAGTGTACTAATTTGCAATCAC---------------------------------------------------------------------------------GCAGAGTATAG---CCC------------------------------------------------------CCTT---CC---------CCTGCTCG-----------------------------------------------------------------------------------------C---ACCACATCATTTATAAAATT-CATAAACTG---GCAGC----------------CCAAA-G-TTGGGAATGCGGAAAGTTTTAGT-GG--------------------------C-------------------------------------------CCAGCTGATGCCGAC-----------GTCCTGATGATGACCAATGATGTTGATAGTTAG--TCCT-TGACTGGCCGCACT------------CC------------------A-------CACCC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.........................CTACAACAACGCGGCCCGTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGATGATGACCAATGATGT............................................................................	21	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGATGATGACCAATGATGTT...........................................................................	22	1	1.00	1	0	0	1	0

dm3

AGGACAGCCAGCACATCGGCTGTGGCTACAACAACGCGGCCCGTCCCTTCGTGAGTGTACTAATTTGCAATCAC---------------------------------------------------------------------------------GCAGAGTATAG---CCC------------------------------------------------------CATG---CC---------CGTCCTCG-----------------------------------------------------------------------------------------C---ACCACATCATTTATAAAATT-CATAAACTG---GCAGC----------------CCAAA-G-TTGGGAATGCGGAAAGTTTTAGT-GG--------------------------C-------------------------------------------CCATCTGATGCTGAC-----------GTCCTGATGATGACCAATGATGTTGATAGTTAG--TCCT-TGACTGGCCGCACT------------CC------------------ACACCCCACA---	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGATGATGACCAATGATGT............................................................................	21	1	29.00	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGATGATGACCAATGATG.............................................................................	20	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGATGATGACCAATGATGTTG..........................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................GGCTGTGGCTACAACAACGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................GC----------------CCAAA-G-TTGGGAATGCGGAAAGTTTT.........................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTGGGAATGCGGAAAGTTTTAGT-.....................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........AGCACATCGGCTGTGGCTACAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTGAC-----------GTCCTGATGATGA......................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................ACAACGCGGCCCGTCCCTTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................ACTG---GCAGC----------------CCAAA-G-TTGGGA.......................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.................................ACGCGGCCCGTCCCTTCTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................ACAACAACGCGGCCCGTCCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGATGATGACCAATGATGTTGA.........................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..GACAGCCAGCACATCGGCTGTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................CG-----------------------------------------------------------------------------------------C---ACCACATCATTTATAA...........................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTTAG--TCCT-TGACTGGCCGCACT------------.................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGATGATGACCAATGATGT............................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...............................................................................................................................................................AGTATAG---CCC------------------------------------------------------CATG---CC---------CGTCC...........................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.................................ACGCGGCCCGTCCCTTCTCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AGGACAGCCAGCACATCGGCTGTGGCTACAACAACGCGGCCCGTCCCTTCGTGAGTGTACTAATTTGCAATCAC---------------------------------------------------------------------------------GCAGAGTATAT---CCC------------------------------------------------------CATG---CC---------CATCCTCG-----------------------------------------------------------------------------------------C---ACCACATCATTTATAAAATT-CATAAACTG---GCAGC----------------CCAAA-G-TTGGGAATGCGGAAAGTTTTAGT-GG--------------------------C-------------------------------------------CCAGCTGATGCTGAC-----------GTCCTGATGATGACCAATGATGTTGATAGTTAG--TCCT-TGACTGCCCAC--------------------------------------------ACTC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGACCAATGATGTTG..........................................................................	20	1	1.00	1	0	0	0	1	0	0	0
.................GGCTGTGGCTACAACAACGCGGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
.....AGCCAGCACATCGGCTGTGGCTACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
..............ATCGGCTGTGGCTACAACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
........CAGCACATCGGCTGTGGCTAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
..............................ACAACGCGGCCCGTCCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
........CAGCACATCGGCTGTGGCTACAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
.....AGCCAGCACATCGGCTGTGGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
................................AACGCGGCCCGTCCCTTCTCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	1	0	0	0	0	0	0

droYak3

AGGACAGCCAGCACATCGGCTGTGGCTACAACAACGCGGCCCGTCCCTTCGTGAGTGTACTAATTTGCAATCAC---------------------------------------------------------------------------------GCAGAGTATAGT---CC-----------------CATACCC------------------------------CATA---CC---------CATCCTCG-----------------------------------------------------------------------------------------CACTACCACATCATTTATAAAATT-CATAAACTG---GCAGC----------------CCAAA-G-TTGGGAATGCGGAAAGTTTTAGT-GG--------------------------C-------------------------------------------CCAGCTGATGCTGAC-----------GTCCTGATGATGACCAATGATGTTGATAGTTAG--TCCT-TGACTGCCCACACTCAACACT------------------------------CCTCACCT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGATGATGACCAATGATG.............................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............ACATCGGCTGTGGCTACAACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGATGATGACCAATGATGT............................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEug1

AGGACAGCCAGCACATCGGCTGTGGCTACAACAACGCTGCCCGTCCCTTCGTAAGTGTACTAATTTGCAATCAC---------------------------------------------------------------------------------GCAGAGAGTAGTATCCC-----------------C-----------------------AA------AC-TCC------CC---------TATCCTTG-----------------------------------------------------------------------------------------CAACACCACATCATTTATAAAATT-CATAAACTG---GCAGC----------------CCAAA-G-TTGGGAATGCGGAAAGTTTTAGT-GG--------------------------C-------------------------------------------CCAGCTGATGCTGAC-----------GTCCTGATGATGACCAATGATGTTGATAGTTAG--TTCT-AGACCGACCAC--------CC-CAT-----------------------------CACCG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGGACAGCCAGCACATCGGCTGTGGCTACAACAACGCGGCCCGTCCCTTCGTGAGTGTACTAATTTGCAATCAC---------------------------------------------------------------------------------GCAGAGTATATG---AC-----------------CATCC----------------------------------------C---------CCA-CCCG-----------------------------------------------------------------------------------------C---ACCACATCATTTATAAAATT-CATAAACTG---GCAGC----------------CCAAA-G-TTGGGAATGCGGAAAGTTTTAGT-GG--------------------------C-------------------------------------------CCAGCTGATGCTGAC-----------GTCCTGATGATGACCAATGATGTTGATAGTTAG--TTCT-AGACCGCCCACCCT------------CC----------------CCA-------CACTC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGGACAGCCAGCACATCGGCTGTGGCTACAACAACGCGGCCCGTCCCTTCGTGAGTGTACTAATTTGCAATCAC---------------------------------------------------------------------------------GCAGAGTAGAT---CCC------------------------------------------------------CAAA---CC---------CATCCCTG-----------------------------------------------------------------------------------------C---ACCACATCATTTATAAAATT-CATAAACTG---GCAGC----------------CCAAA-G-TTGGGAATGCGGAAAGTTTTAGT-GG--------------------------C-------------------------------------------CCAGCTGATGCTGAC-----------GTCCTGATGATGACCAATGATGTTGATAGTTAG--TTCT-AGACCGCCCACACT---------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGGACAGCCAGCACATCGGCTGTGGTTACAACAACGCGGCCCGTCCCTTCGTAAGTGTACTAATTTGCAATCAC---------------------------------------------------------------------------------CCGGAGTATTT-------------------------------------------------------------------CC---------CATCCCTG-----------------------------------------------------------------------------------------CCCCACCACATCATTTATAAAATT-CATAAACTG---GCAGC----------------CCAAA-G-TTGGGAATGCGGAAAGTTTTAGT-GG--------------------------C-------------------------------------------CCAGCTGATGCTGAC-----------GTCCTGATGATGACCAATGATGTTGATAGTTAG--TTCT-AGAATG-----------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGGACAGCCAGCACATCGGCTGTGGCTACAACAACGCGGCCCGCCCCTTCGTGAGTGTACTAATTTGCAATCAC---------------------------------------------------------------------------------GCAGAGTATAT---CACCCACT-------------------------------------------------CTTGC--CC---------CATCCCTG-----------------------------------------------------------------------------------------T---GCCACATCATTTATAAAATT-CATAAACTG---GCAGC----------------CCAAA-G-TTGGGAATGCGGAAAGTTTTAGT-GG--------------------------C-------------------------------------------CCAGCTGATGCTGAC-----------GTCCTGATGATGACCAATGATGTTGATAGTTAG--TTCT-AGAACGCCATC--------CC-CCT-----------------------------TACCC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGGACAGCCAGCACATCGGCTGTGGCTACAACAACGCGGCCCGTCCCTTCGTAAGTGTACTAATTTGCAATCACGA------------------------------------------------------TGAGATGAGGAGA------------GGAGAGTAGAG--TCCT------------------------------------------------------CTTGCCTCCCAT------CAT-CCTG-----------------------------------------------------------------------------------------C---ACCACATCATTTATAAAATT-CATAAACTG---GCAGG----------------CCAAA-G-TTGGGAATGCGGAAAGTTTTAGT-GG--------------------------C-------------------------------------------CCAGCTGATGCTGAC-----------GTCCTGATGATGACCAATGATGTTGATAGTTAG--TTCC-AGG---------------ACT-----CC------------------A-------CTCCC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGGACAGCCAGCACATCGGCTGTGGCTACAACAACGCGGCCCGTCCCTTCGTAAGTGTACTAATTTGCAATCAC---------------------------------------------------------------------------------GCAAAGTATAA---CTCCCTC-----------------CCTCAT-----------ACCAAGTCACACCATG--------CCATCATGCCCATCCCTT-----------------------------------------------------------------------------------------G---GTCACATCATTTATAAAATT-CATAAACTG---GCAAC----------------CCGAA-G-TTGCGAATGCGGAAAGTTTTAGT-GG--------------------------C-------------------------------------------CCAGCTGATGCTGAC-----------GTCCTGATGATGACCAATGATGTTGATAGTTAG--TTCT-AGACCGCTATC---C-CAGCC-------------------------------------C	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AGGACAGCCAGCACATCGGCTGTGGCTACAACAACGCGGCCCGTCCCTTCGTGAGTGTTCTAATTTGCAATCATGG------------------------------------------------------GGACACCGGGAGAAAGC-TCTTTGTGGAGAG----------------------------------------------------------------------------------------------TCCCT--TGGGAAAACTA----TG-GCGATTAGGGTGGGAGCTACTTTCTCTCGGTGTACACGGAGAACCCGGGGTATCTAGAACTC---ACCACATCATTTATAAAATT-CATAAACTG---GCAAC----------------CCAAA-G-TTGGGAATGCGGAAAGTTTTAGT-TGCCACA---------------CAACCGC-------------------------------------------CCAGCTGATGCTGAC-----------GTCCTGATGATGACCAATGATGTTGATAGTTAG--TTTC-AGG---------------GCCCC--------------------------------CTTC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..............................ACAACGCGGCCCGTCCCTTCGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	1	0	0	0	1	0
...............TCGGCTGTGGCTACAACAACGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.........AGCACATCGGCTGTGGCTACAACAACG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.........AGCACATCGGCTGTGGCTACAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..........GCACATCGGCTGTGGCTACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..........................TACAACAACGCGGCCCGTCCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
...........................ACAACAACGCGGCCCGTCCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..............ATCGGCTGTGGCTACAACAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
......GCCAGCACATCGGCTGTGGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.........AGCACATCGGCTGTGGCTACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
......GCCAGCACATCGGCTGTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.............CATCGGCTGTGGCTACAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..........GCACATCGGCTGTGGCTAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..............................ACAACGCGGCCCGTCCCTTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.....AGCCAGCACATCGGCTGTGGCTACAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................TTATAAAATT-CATAAACTG---GC........................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
..........GCACATCGGCTGTGGCTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
................................AACGCGGCCCGTCCCTTCGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.................................ACGCGGCCCGTCCCTTCGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0

droBip1

AGGACAGCCAGCACATCGGCTGTGGTTACAACAACGCGGCTCGTCCCTTCGTGAGTGTTCTAATTTGCAATCATGG------------------------------------------------------GGACACCGGGAGAAAGCCTCTTTGTGGAGAG----------------------------------------------------------------------------------------------TCCCT--TGGGAGAACAA----TGGGCGATTGGGGCGGAAGCTACTTTCTCTCGGTGTAGT---------CGGGGTATCTAGTGCTC---ACCACATCATTTATAAAATT-CATAAACTG---GCAAC----------------CCAAA-G-TTGGGAATGCGGAAAGTTTTAGT-TGCCACA---------------CAACCGC-------------------------------------------CCAGCTGATGCTGAC-----------GTCCTGATGATGACCAATGATGTTGATAGTTAG--TTTC-TGA---------------GCCCCCTTCC------------------CCAC---------	Size	Hit Count	Total Norm	Total
No Reads

dp5

AGGACAGCCAGCACATTGGCTGCGGCTACAACAACTCGGCCCGTCCATTTGTAAGTTTACTAATTTGCAATCAT---------------------------------------------------------------------------------ACAAAGTGTAGCAC---ACATTTGCGGG-CAGCCCATCCCACATCCCCCTTCCACAGCAA------ACATCC------CA---------CATCCTAGGAGTCCCTCCTGGGAGCAGGAGTGTTGGCCGA-GGTGGTG------------------------------------------------------GAACATCATTTATAAAATT-CATAAACTGCAGGGAGC----------------CCAAA-ACTTGGGAGTGCTGAAACTTTTAGGTGG-AACAACCACTGCCGTCAGGCTACCAC-------------------------------------------ACAGCTGATGCTGATGCTGGTGATGTGTCCTGATGATGACCAATGATGTTGATAGTTGGAATCCT-T---------C---C-AAGCACGGTTCCCCCTCCCGCTCCGAGGA----C---------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...................CTGCGGCTACAACAACTCGGCCCGTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0

droPer2

AGGACAGCCAGCACATTGGCTGCGGCTACAACAACTCGGCCCGTCCATTTGTAAGTTTACTAATTTGCAATCAT---------------------------------------------------------------------------------ACAAAGTGTAGCAC---ACATTTGCGGG-CAGCCCATCCCACATCCCCCTTCCACAGCAA------ACATCC------CA---------CATCCTAGGAGCCCCTCCTGGGAGCAGGAGTGTTGGCCGA-GGTGGTG------------------------------------------------------GAACATCATTTATAAAATT-CATAAACTGCACGGAGC----------------CCAAA-ACTTGGGAGTGCTGAAACTTTTAGGTGG-AACAACCACTGCCGTCAGGCTACCAC-------------------------------------------ACAGCTGATGCTGATGCTGGTGATGTGTCCTGATGATGACCAATGATGTTGATAGTTGGAATCCT-T---------C---C-AAGCACGGTTCCCCCTCCCGCTCCGAGGA----C---------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.........AGCACATTGGCTGCGGCTACAACAACTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
........CAGCACATTGGCTGCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0

droWil2

AGGATAGCCAACACATTGGCTGTGGCTATAACAACTCGGCTCGTCCATTTGTAAGTTAACTAATA----ATGTTGT--A---GTATACTTTAGGGGAGGA------------------------------TGGGATAAAGAG-------------AAAGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGAATCATTTATAATATT-CATAAACTG---CTTGTGTTCTGGTTGAGAAATT---------------------------------------------------------------------------------------------------------------CCCTAAA-----------AACTTGCTGATGACCAATGATGCTGATAGTTAG--TCA--------------------GCT-----C---------C-----TGACA-------CATTT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
....................TGTGGCTATAACAACTCGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0
.......CCAACACATTGGCTGTGGCTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTGATGACCAATGATGCTGATA.......................................................................	25	1	1.00	1	0	1	0	0	0
...........CACATTGGCTGTGGCTATAACAACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0
.............................AACAACTCGGCTCGTCCATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.............CATTGGCTGTGGCTATAACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0
...........................ATAACAACTCGGCTCGTCCATTTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0

droVir3

CGGACAGCCAGCACATTGGTTGTGGCTACAACAACTCGGCGCGTCCATTTGTAAGTCAACTAATTTGAAATCATAC--A--CGCACACACAGAGGGAGAAAGGAAGAGAGAGAGA------GCTGGCAAA----------------------------ATGTGTAGCAT---ACATTTGTGGG-CAA--------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGCATCATTTATAAAATT-TATAAACTC---TCAACGT----GTTGG-----CCAAA-A-CTTAAAATGTTGCAGGTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...........................ACAACAACTCGGCGCGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................GGAGAAAGGAAGAGAGAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
...............TTGGTTGTGGCTACAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................CAACTCGGCGCGTCCATTTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................GTGGCTACAACAACTCGGCGCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TTGGTTGTGGCTACAACAACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................CTACAACAACTCGGCGCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CCGATAGCCAGCATATTGGCTGCGGCTACAACAACTCGGCGCGTCCATTTGTAAGT-TACAAATACATGAACAG---------------------------------------------------------------------------------AGAGAGCGTAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.....................GCGGCTACAACAACTCGGCGCGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...........................ACAACAACTCGGCGCGTCCATTTGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0
.....................GCGGCTACAACAACTCGGCGCGTCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0
.........AGCATATTGGCTGCGGCTACAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0

droGri2

AGGATAGCCAGCACATTGGCTGTGGCTACAACAACTCGGCTCGTCCATTTGTAAGTCAACTAATTTGCAATCACAAACACCCGCACACACACACACACACACACACACAGACACACGCATGGTTGGCGGA------------A------------TGT--GTGTGGCAT---ACATTTGTGGGGCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------CA-ACAATCATTTATAAAATTTTATAAACTC---TCAAC----TGGTTGA-----CCAAAAACTT---------AAAAGTTCTTGA-GG--------------------------CACGTTTTTACAAGCTGGCATTAGTCCGCACTCCGCCCACAATTACAACTGACACTGAC-----------GTGCTG---ATGACCAATGATGTTGATAGTTGG--TCTCCAGG--GGAAA-------AGCT-----C---------CTCTGATGACA-------CATTC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_15008

2r:12336535-12336684 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads