ID:

dsi_15003

 Coordinate:

3r:17381769-17381918 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-22.8 -22.4 -22.4 -22.1

Flybase annnotation

CDS [3r_17381919_17382011_-]; exon [3r_17381919_17382011_-]; intron [3r_17381339_17381918_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCGACGGTGTGGGTCCCGAGCTGGTCTACTCCCTACAGGAGGTCTTCAAGGTAGCTATCCATACAGCAAGATGCCATCATTCACATGCAGTATTCCAATGCGTCTTTATTCGCTGTGGAGTGTGAAGCAGACTTATAAATCTATACTCTATCGTCTCTTGCTCTTCTTAAAAAAAGGGTATTGAAGCTTAGGAACACTATCAGCCTGGTTTCCTATTCAATAGAAAAGCTTATTGTTAAGATATCTTCAT
********************************************************************************........((...(((...((.((..(((((.....(((((...(((.((((....................))))))))))))...........)))))..)).))...)))...))**************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 O001
Testis
 M025
embryo
 SRR618934
dsim w501 ovaries
 O002
Head
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
......................................GAGGTCTTCCAGGTAGCACTC............................................................................................................................................................................................... 21 3 1 23.00 23 18 3 0 2 0 0 0 0 0 0 0
.......................................AGGTCTTCCAGGTAGCACTC............................................................................................................................................................................................... 20 3 8 2.88 23 20 1 0 2 0 0 0 0 0 0 0
................................................................................TCACATGCAGTATTCCAAT....................................................................................................................................................... 19 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
.............................................................................................TCCAATGCGTCTTTATTCGCT........................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................AACACTATCAGCCTGGTTTCC..................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................ACCTATACTCTATCGTCA.............................................................................................. 18 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................GTATTGAAGCTTAGGAACACT.................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................CACATGCAGTATTCCAAT....................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........GGGTCCCGAGCTGGTCTAC............................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...ACGGTGTGGGTCCCGAGC..................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................CTTAGGAACACTATCAGCCT............................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....CGGTGTGGGTCCCGAGCTGTT................................................................................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.....GGTGGGGTTCCCGAGC..................................................................................................................................................................................................................................... 16 2 20 0.90 18 0 0 0 0 18 0 0 0 0 0 0
........GTGGGACCCGAGCTGGT................................................................................................................................................................................................................................. 17 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0
...............................CGTACAGGAGGTCTTGAA......................................................................................................................................................................................................... 18 2 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0
...............................................AAGAGAGCTATCCGTACAG........................................................................................................................................................................................ 19 3 10 0.20 2 0 2 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................GGTATTGACGCTTAGGT......................................................... 17 2 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................TGTGCAGTGAGAAGTAGACT..................................................................................................................... 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0
...................................CAGCAGGTCTTCAAGG....................................................................................................................................................................................................... 16 1 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................AGGGTTTTGAAGCTTA............................................................ 16 1 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................CCTATACTCTACCGTC............................................................................................... 16 2 8 0.13 1 0 0 0 0 0 0 0 0 0 1 0
.....................................GCAGGTCTCCAAGGTA..................................................................................................................................................................................................... 16 2 20 0.10 2 0 0 0 0 0 0 0 0 0 0 2
..........................................................................................................................................ACCTATACTCTACCGTCAC............................................................................................. 19 3 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................CTATACTCTACCGTCA.............................................................................................. 16 2 14 0.07 1 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................GCTTGGGAACACCATCA................................................ 17 2 18 0.06 1 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................AAAAAAGTGTATTGAAGTTGA............................................................ 21 3 19 0.05 1 0 0 0 0 0 0 0 0 1 0 0
..................................TCAGGAGGTCTCCAAGG....................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
.....GGTGGGGTTCCCGAGCGGG.................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

CGCTGCCACACCCAGGGCTCGACCAGATGAGGGATGTCCTCCAGAAGTTCCATCGATAGGTATGTCGTTCTACGGTAGTAAGTGTACGTCATAAGGTTACGCAGAAATAAGCGACACCTCACACTTCGTCTGAATATTTAGATATGAGATAGCAGAGAACGAGAAGAATTTTTTTCCCATAACTTCGAATCCTTGTGATAGTCGGACCAAAGGATAAGTTATCTTTTCGAATAACAATTCTATAGAAGTA
****************************************************........((...(((...((.((..(((((.....(((((...(((.((((....................))))))))))))...........)))))..)).))...)))...))******************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 M023
head
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
...........................................GGAGTTCGATCGATAGGTCTGT......................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................CTCCAGAAGGTCCATCGTGAG............................................................................................................................................................................................... 21 3 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................................CGGTAGAAAGGGTACGTCATAAT........................................................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................TAGGAGACAACGAGAGGAATT................................................................................ 21 3 4 0.50 2 1 0 0 0 0 1 0 0 0
..........CCCAGGGCTCGACCAGAAAAG........................................................................................................................................................................................................................... 21 2 2 0.50 1 0 0 1 0 0 0 0 0 0
........................................................TAGGTACATCGTTCTATGGTA............................................................................................................................................................................. 21 3 2 0.50 1 0 0 0 1 0 0 0 0 0
......................................CTCCAGAAGGTCCATCGTGA................................................................................................................................................................................................ 20 3 7 0.43 3 0 3 0 0 0 0 0 0 0
.........................................................AGGTACATCGTTCTATGGTA............................................................................................................................................................................. 20 3 5 0.20 1 0 0 0 0 0 0 1 0 0
.............................................................ATGTCGTTCTAGGGT.............................................................................................................................................................................. 15 1 6 0.17 1 0 0 1 0 0 0 0 0 0
..........................................................GGTACATCGTTCTATGGTA............................................................................................................................................................................. 19 3 20 0.15 3 0 0 0 0 3 0 0 0 0
.................................................................CTTGCTACGGGAGTAAGT....................................................................................................................................................................... 18 3 20 0.15 3 0 0 3 0 0 0 0 0 0
......................................................................................CGTCAGAAGGTTACGC.................................................................................................................................................... 16 1 7 0.14 1 0 0 1 0 0 0 0 0 0
............................................AAGTTCCATTGATAG............................................................................................................................................................................................... 15 1 9 0.11 1 0 0 0 0 1 0 0 0 0
...................................................................TGCTACGGGAGTAAGT....................................................................................................................................................................... 16 2 20 0.10 2 0 0 2 0 0 0 0 0 0
............................................................................................................................................................................................................................ATCTTTTCGATAAACACTTC.......... 20 3 13 0.08 1 1 0 0 0 0 0 0 0 0
.....................................................................CTACGGGAGTAAGTGTG.................................................................................................................................................................... 17 2 13 0.08 1 0 0 1 0 0 0 0 0 0
......................CGAGATGGGGGATGTC.................................................................................................................................................................................................................... 16 2 14 0.07 1 0 0 0 0 0 0 0 1 0
....................................................................................................................................................ATAGCAGAGAACGCTAAGG................................................................................... 19 3 17 0.06 1 0 0 0 0 0 0 0 0 1
...................................................................................................GGCAGGAATAAGCGAC....................................................................................................................................... 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................AGAATTTTTTTCCGA....................................................................... 15 1 20 0.05 1 0 0 0 0 1 0 0 0 0
............................................................TCTGTCGTTCTAGGGT.............................................................................................................................................................................. 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0
.........GCCCAGGGCTCGACCG................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0
.....................................................CAATAGGTACATCGTTCTA.................................................................................................................................................................................. 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0
......................................................................................................................................TATTTAGAGATGAAATCGC................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0

Generated: 04/23/2015 at 05:38 PM