ID:

dsi_14932

 Coordinate:

3r:10116650-10116799 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-11.9 -11.9 -11.8

Flybase annnotation

CDS [3r_10116800_10116890_-]; exon [3r_10116800_10116890_-]; intron [3r_10115107_10116799_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ACAGCAGGTAAAGCGCTTGGAAAACTTATCGCTGGGAGTGGATCCACAAGGTAACTACTTATCAGACAACCATATTCACATGGCCAAGCCCAAAGCCCTAAATAAATATGACAAAGCGAACGGATGCCTCTGACTAATATAAAAAAATAAAGAAAAAACAGAGATAAGCAATTAAATGAATCAAATGCTGAAAATGCTCTCCTTCTGGGAGAAGGAAATCTGCGGAAGAGAGTCACAAAATGAATAAGTT
**************************************************...........((((.((.....(((((...(((...))).........................((........))(((((..........................))))).............)))))....)))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
.............................................................................................................GACAAAGCGAACGGATGCCT......................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................TCTGACTATTATAAAAAAA....................................................................................................... 19 1 1 1.00 1 0 1 0 0 0 0 0
..............................................................................................................................................................................................................GGGAGAAGGAACTCTG............................ 16 1 2 0.50 1 0 0 1 0 0 0 0
...................GAAAACTTATCGCTGGGC..................................................................................................................................................................................................................... 18 1 2 0.50 1 0 0 0 1 0 0 0
............................................................................................................................................................................CAAATGATTCAAATGCTGAA.......................................................... 20 2 3 0.33 1 0 0 0 0 1 0 0
.........AAAGCGCTTGGAAAAAT................................................................................................................................................................................................................................ 17 1 8 0.13 1 0 0 0 0 0 1 0
.....................................................ACAATTTATCAGACAACC................................................................................................................................................................................... 18 2 9 0.11 1 0 0 0 0 0 1 0
.....................................................................................................................................................AAGCAAACACAGAGATCAGCA................................................................................ 21 3 11 0.09 1 0 0 0 0 0 0 1
.....................GAACTTATCGCTGGGATTAG................................................................................................................................................................................................................. 20 3 11 0.09 1 0 0 0 1 0 0 0
................................................................................................................................................................................................................GAGAAGGAACTCTGC........................... 15 1 12 0.08 1 0 0 1 0 0 0 0
...................................................................................................................................................................................................GCTTTCCTTCTGGGA........................................ 15 1 12 0.08 1 0 0 0 0 1 0 0
............................TCGCTGGGTGTAGATCC............................................................................................................................................................................................................. 17 2 12 0.08 1 0 0 1 0 0 0 0
...........................................................................................................ATGACAAAGCGAACAAATGCA.......................................................................................................................... 21 3 13 0.08 1 0 0 0 0 0 0 1
.........ATAGCGCTTGGAAAA.................................................................................................................................................................................................................................. 15 1 17 0.06 1 0 0 0 0 1 0 0
.................................................................................................................................................................................................................CGAAGGCAATATGCGGAAG...................... 19 3 20 0.05 1 0 0 0 0 0 1 0
......................................................................................................................................TGATATAAAAAAATAAA................................................................................................... 17 1 20 0.05 1 0 0 0 0 1 0 0
................................TGGGAGTGGGTCTCCAAGG....................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0

Anti-sense strand reads

TGTCGTCCATTTCGCGAACCTTTTGAATAGCGACCCTCACCTAGGTGTTCCATTGATGAATAGTCTGTTGGTATAAGTGTACCGGTTCGGGTTTCGGGATTTATTTATACTGTTTCGCTTGCCTACGGAGACTGATTATATTTTTTTATTTCTTTTTTGTCTCTATTCGTTAATTTACTTAGTTTACGACTTTTACGAGAGGAAGACCCTCTTCCTTTAGACGCCTTCTCTCAGTGTTTTACTTATTCAA
**************************************************...........((((.((.....(((((...(((...))).........................((........))(((((..........................))))).............)))))....)))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 M053
female body
 SRR553487
NRT_0-2 hours eggs
......................................................................................TCGGGTTTCGGGATTTATTTATA............................................................................................................................................. 23 0 1 2.00 2 2 0 0 0 0 0 0 0
..........................................AGGTGTTCCATTGATGAATAGTCTGT...................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0
.................................................CCATAGATGACTAGTTTGTT..................................................................................................................................................................................... 20 3 2 0.50 1 1 0 0 0 0 0 0 0
.......................TGAATAACGACCCTCACCC................................................................................................................................................................................................................ 19 2 3 0.33 1 0 0 0 1 0 0 0 0
................................................................................................................................................................................................TTAAGAGAGGAAGACC.......................................... 16 1 4 0.25 1 0 0 1 0 0 0 0 0
....................................................................................GTTCGGGTTTCGTGATAGATT................................................................................................................................................. 21 3 4 0.25 1 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................AAATGCCTTCTCTCAGT............... 17 2 7 0.14 1 0 0 1 0 0 0 0 0
................................................................................................................................AGACTGATTCTATTTTAT........................................................................................................ 18 2 10 0.10 1 0 0 0 0 0 1 0 0
......CGTTTTCGCGAACCTTTCGA................................................................................................................................................................................................................................ 20 3 16 0.06 1 0 0 0 0 0 0 1 0
..................................................................................CGGTTCACGTTTCGAGATTT.................................................................................................................................................... 20 3 18 0.06 1 0 0 0 1 0 0 0 0
....................................................................................GTTCGGGTTTAGGGATC..................................................................................................................................................... 17 2 19 0.05 1 0 0 0 0 0 0 0 1

Generated: 04/24/2015 at 10:29 AM