ID:

dsi_14925

Coordinate:

2r:5448348-5448497 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-18.2	-18.2	-18.2

Flybase annnotation

exon [2r_5448498_5448811_+]; five_prime_UTR [2r_5448498_5448705_+]; intron [2r_5439098_5448497_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CACTCGCATGTGTACAGAACATAAAGATTAATACCGAGCTAAAAAAAAACCTTAGACAAGTGAAACACACAAAAACAAACTGGGCTAACCGACGAGCTGCAAACTAAACTCAAGCTGGCTAATCGCAGGAGAAATAATCACATAACACACCAATAACCAGAGCAAAAGAGGCTAACTCAGAGAATATTTTCTTTTTGCAGCTGAATACCATTTAAATTGGCTAGTTTAAATGGAAAATGCGCAGAGTTCG ************************************************.........(((.....))).........((((......(((..((((((.............)).))))..)))...((.......)).................)))).(((((.(((.....))).(((((....))))))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O001 Testis	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	M024 male body	SRR553485 Chicharo_3 day-old ovaries	SRR902009 testis
...............................................................................................................AAGCTGGCTAATCGCAGG.........................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................TAACCAGAGGAAAAGA.................................................................................	16	1	6	0.83	5	0	3	1	1	0	0	0
......................................................................................................................................................CAGTAACCCGAGGAAAAGA.................................................................................	19	3	18	0.39	7	0	7	0	0	0	0	0
....................................................................................CCAACCGTCGAGCTGCAA....................................................................................................................................................	18	2	3	0.33	1	0	0	1	0	0	0	0
.......................................................................................................................................................AGTAACCAGAGGAAAAGA.................................................................................	18	2	10	0.10	1	0	0	1	0	0	0	0
..................................................................................................................CTGGCTAATCGCGGCGGA......................................................................................................................	18	3	20	0.05	1	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................TAGTTTAAACGGAAA..............	15	1	20	0.05	1	0	0	0	0	0	1	0
...............................................................................................................................................................GATCAAAAGAGGTAAACTC........................................................................	19	3	20	0.05	1	0	0	0	0	0	0	1

Anti-sense strand reads

GTGAGCGTACACATGTCTTGTATTTCTAATTATGGCTCGATTTTTTTTTGGAATCTGTTCACTTTGTGTGTTTTTGTTTGACCCGATTGGCTGCTCGACGTTTGATTTGAGTTCGACCGATTAGCGTCCTCTTTATTAGTGTATTGTGTGGTTATTGGTCTCGTTTTCTCCGATTGAGTCTCTTATAAAAGAAAAACGTCGACTTATGGTAAATTTAACCGATCAAATTTACCTTTTACGCGTCTCAAGC ************************************************.........(((.....))).........((((......(((..((((((.............)).))))..)))...((.......)).................)))).(((((.(((.....))).(((((....))))))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	O001 Testis	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs
........................................................................................GGCTGCTCGACGTCTGA.................................................................................................................................................	17	1	1	2.00	2	1	1	0	0	0
......................................................CTGTTCACTTTGTGTGTT..................................................................................................................................................................................	18	0	1	1.00	1	0	0	1	0	0
............................................................ACTTTGTGTGTTTTTG..............................................................................................................................................................................	16	0	2	0.50	1	0	0	0	1	0
...................................................................................................GTTTGATCTCAGTTCGA......................................................................................................................................	17	2	13	0.38	5	0	1	0	0	4
...........................................................................GGTTGACTCGATTGGCTG.............................................................................................................................................................	18	2	4	0.25	1	1	0	0	0	0
.............................................................CTTTGTGTGTTTTTG..............................................................................................................................................................................	15	0	5	0.20	1	0	0	0	1	0
............................................................ACTTTGTGTGTTTTT...............................................................................................................................................................................	15	0	8	0.13	1	0	0	0	1	0
.....................................................................................................................................................GGTTTTTGGTCTCGTTT....................................................................................	17	1	13	0.08	1	0	0	0	0	1

Generated: 04/23/2015 at 02:53 PM