ID:

dsi_14912

 Coordinate:

3r:17380450-17380582 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3r_17380219_17380449_-]; exon [3r_17379631_17380449_-]; CDS [3r_17380583_17381164_-]; exon [3r_17380583_17381164_-]; intron [3r_17380450_17380582_-]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------##################################################
GTGTCGTCGCTGGTGCCTCCTACTCCTCGGAATCCGTCGTCTTTGAGCCGGTAAGATTCGCCATAAAGGCATAAAGATAATCCATAAGATAATTCGTAAACTCTGATTTACACGATTCTCGAGCCGAGTAGTGCGAATCCACTTCAGACTCTTCTTATCTCTAATACCGATTTCCGATTGCAGGGTGCACGTCACACCTTCGCCGAGGCCGTGGGCAAGAACGTGGCTAATCC
**************************************************......((.((......((..............((((((...............(((((.(((....((((...))))..))).))))).............))))))...............))....))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 O001
Testis
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
.........CTGGTGCCTCCTACTCCTCGGA.......................................................................................................................................................................................................... 22 0 1 2.00 2 0 0 0 2 0 0 0 0
..........................TCGGAATCCGTCGTCTTTGAGCC........................................................................................................................................................................................ 23 0 1 2.00 2 2 0 0 0 0 0 0 0
.........................CTCGGAATCCGTCGTCTTTGAGCCGGG..................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0
................CTCCTACTCCTCGGAATCCGTCGTC................................................................................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0
......................CTCCTCGGAATCCGTCGTCTTTGAGCC........................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0
GTGTCGTCGCTGGTGCCTCCT.................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................TCCACGTCACACCTTCGCCGAGGCCG...................... 26 1 1 1.00 1 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................AGGCCGTGGGCAAGAACGTGG....... 21 0 1 1.00 1 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................CGCCGAGGCCGTGGGCAAGAAC........... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
........................CCTCGGAATCCGTCGTCTTTGAGCC........................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0
......................CTCCTCGGAATCCGTCGTC................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0
..........................TCGGAATCCGTCGTCTTTGAGCCGGGT.................................................................................................................................................................................... 27 2 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................CGCCGAGGCCGTGGGCAAGAACGTGGCT..... 28 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................CTGGTCGCAGGGTGCACGTCA....................................... 21 3 2 0.50 1 0 0 0 0 0 1 0 0
....................................................................................................................................................................TACCGATTTCCCATTGCA................................................... 18 1 4 0.25 1 0 0 0 0 0 1 0 0
...........................................................................................................................................................................TTCCGATTGTAGGCTGCA............................................ 18 2 4 0.25 1 1 0 0 0 0 0 0 0
.............................GAATCCGTCGACTATGATCC........................................................................................................................................................................................ 20 3 5 0.20 1 1 0 0 0 0 0 0 0
GTGTCGTCCCGGGTGCC........................................................................................................................................................................................................................ 17 2 8 0.13 1 0 0 0 0 0 1 0 0
...................................GTCGTCTTTGAGCCGGGTG................................................................................................................................................................................... 19 3 20 0.10 2 2 0 0 0 0 0 0 0
...........................................................................................................................................................................TTCGGATTGCAGGCTGCA............................................ 18 2 12 0.08 1 0 1 0 0 0 0 0 0
........................................CTTTGAGTCGGTACGA................................................................................................................................................................................. 16 2 20 0.05 1 0 1 0 0 0 0 0 0
.................................................................................................AAACTCTGATTTGCAGG....................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 1 0
.............................................................................................................................................................................................CGTCACGGCTTCGCCG............................ 16 2 20 0.05 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

CACAGCAGCGACCACGGAGGATGAGGAGCCTTAGGCAGCAGAAACTCGGCCATTCTAAGCGGTATTTCCGTATTTCTATTAGGTATTCTATTAAGCATTTGAGACTAAATGTGCTAAGAGCTCGGCTCATCACGCTTAGGTGAAGTCTGAGAAGAATAGAGATTATGGCTAAAGGCTAACGTCCCACGTGCAGTGTGGAAGCGGCTCCGGCACCCGTTCTTGCACCGATTAGG
**************************************************......((.((......((..............((((((...............(((((.(((....((((...))))..))).))))).............))))))...............))....))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 M025
embryo
..............................................................................................................................................................GAGATGCTGGCTAAAGGCT........................................................ 19 2 2 1.00 2 0 2 0 0 0 0
...............................................................................................................................................................AGATGCTGGCTAAAGGCT........................................................ 18 2 3 0.67 2 1 0 1 0 0 0
..............................................................................................................................TTATCTCTCTTAGGTGAAGTCT..................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0
..............................................................................................................................................................GAGATGCTGGCTAAAGGCTG....................................................... 20 3 2 0.50 1 0 0 1 0 0 0
...........................GCCTTAGGCAGCAAAAA............................................................................................................................................................................................. 17 1 2 0.50 1 0 0 0 1 0 0
...............GGAGGATGAGTAGCC........................................................................................................................................................................................................... 15 1 17 0.35 6 0 2 3 1 0 0
.............................................................................................................................................................TGAGATGCTGGCTAAAGGCT........................................................ 20 3 3 0.33 1 1 0 0 0 0 0
...............................................................................................................................................................AGATGCTGGCTAAAGGCTG....................................................... 19 3 17 0.24 4 1 1 0 1 1 0
.................................................................................................................................TCACGCCTCGGTGAACTCTG.................................................................................... 20 3 5 0.20 1 1 0 0 0 0 0
..............................TTAGGCAGCAAAAAATCGTC....................................................................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 1
...............................................................................................................................................................AGATGCTGGCTAAAGGC......................................................... 17 2 17 0.12 2 0 2 0 0 0 0
..........................AGTCTTAGGCATCAGAA.............................................................................................................................................................................................. 17 2 12 0.08 1 1 0 0 0 0 0
.............................................................................................................................................................TGAGCTTCTGGCTAAAGGCT........................................................ 20 3 12 0.08 1 1 0 0 0 0 0
.............................................................................................................................................................TGAGATGCTGGCTAAAGGC......................................................... 19 3 13 0.08 1 0 0 0 0 1 0

Generated: 04/23/2015 at 05:34 PM