dsi_14877

CACCAACCGTACACTGAAACAAATCCAACACAACACGGTACTATACAATATTATGCCTATGAGAGAGAGAAAGGAGGAGCAGAGAAAGTATTCAAATAAAGCTATACGTTTAAGACATGAAAACTGCGAACCGCTTGATCCTGGCCTATTCCTTGCCATGCCCTTGTCATTCACAACATTTTCCATCTCTTTGTTTGCAGGCGCGGGAACCGACTCAAAAAATCCAAGACAAAGTAACGGCACAGCCCAT ************************************************(((((.(((((..((........(((..((.......)).)))........))...)))...)).)))))********************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR902009 testis	M023 head	SRR618934 dsim w501 ovaries	M053 female body
.......................TCCAACACAACACAGTACTATACAATA........................................................................................................................................................................................................	27	1	1	3.00	3	1	0	2	0	0	0	0
..................................................TTATGCCTATGAGAGAGA......................................................................................................................................................................................	18	0	1	1.00	1	0	0	0	0	0	1	0
...................................................................AGAAAGGAGGAGCAGAGAAAGTATTA.............................................................................................................................................................	26	1	1	1.00	1	0	0	0	1	0	0	0
......................................................................................................TATACGTTTAAGACATGA..................................................................................................................................	18	0	1	1.00	1	0	0	0	0	1	0	0
.........................................................TATGAGAGAGAGAAAGGAGGAGCAGAA......................................................................................................................................................................	27	1	1	1.00	1	0	0	0	1	0	0	0
........................................................................................TATTCAAATAAAGCTATACGTTTAAGA.......................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................TCAAAAAATCCAAGACAAAG................	20	0	1	1.00	1	0	1	0	0	0	0	0
.........................................TATACAATATTATGCCTATGAGAGAGA......................................................................................................................................................................................	27	0	1	1.00	1	0	1	0	0	0	0	0
......................................TACTATACAATATTATGCCTATGAGAGAGA......................................................................................................................................................................................	30	0	1	1.00	1	0	1	0	0	0	0	0
...........................................TACAATATTATGCCTATGAGAGAGAGA....................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0	0
.........................................TATACAATATTATGCCTATGAGAGA........................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0
...........................................................TAAGATAGAGAAAGGAGGACC..........................................................................................................................................................................	21	3	3	0.33	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................GCGGGAACAGACTCGA................................	16	2	13	0.08	1	0	0	0	0	0	1	0
............................................................................................................................................................................................................TGGAACCGACTCAAA...............................	15	1	14	0.07	1	0	1	0	0	0	0	0
....AACCGTAAACTGAAAAAAA...................................................................................................................................................................................................................................	19	2	17	0.06	1	0	0	0	0	0	0	1
..............................................................AAGAGAGAAAGGAGGACC..........................................................................................................................................................................	18	2	19	0.05	1	0	0	0	0	1	0	0
...................................................................................................................................................................................................AGCAGCCGCGGGAACC.......................................	16	2	20	0.05	1	0	0	0	0	0	1	0
..........................................................ATGAGAGAGGGGAAGAAGGA............................................................................................................................................................................	20	3	20	0.05	1	0	0	0	1	0	0	0
............................................................................................CTAATAAAGGTAAACGTTTA..........................................................................................................................................	20	3	20	0.05	1	0	0	1	0	0	0	0

GTGGTTGGCATGTGACTTTGTTTAGGTTGTGTTGTGCCATGATATGTTATAATACGGATACTCTCTCTCTTTCCTCCTCGTCTCTTTCATAAGTTTATTTCGATATGCAAATTCTGTACTTTTGACGCTTGGCGAACTAGGACCGGATAAGGAACGGTACGGGAACAGTAAGTGTTGTAAAAGGTAGAGAAACAAACGTCCGCGCCCTTGGCTGAGTTTTTTAGGTTCTGTTTCATTGCCGTGTCGGGTA ********************************************************************************************************************************(((((.(((((..((........(((..((.......)).)))........))...)))...)).)))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	GSM343915 embryo	O001 Testis	M025 embryo	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
............................................................CTCTCTCTCTTTCCTCCT............................................................................................................................................................................	18	0	3	1.00	3	0	0	3	0	0	0	0
.................TTGTTTAAGCTTTGTTGTGCCA...................................................................................................................................................................................................................	22	3	1	1.00	1	0	1	0	0	0	0	0
.........ATGTGACTTTGTTTAGGTTGT............................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0
........................................................................................ATAAGTTTTTTTCGATATGGAAA...........................................................................................................................................	23	2	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................TAAGTTTTTTTCGATATGGAA............................................................................................................................................	21	2	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................GGTACGCGAACAGCAAGTTTT..........................................................................	21	3	2	0.50	1	0	0	0	1	0	0	0
......................................................................................................................................................................................................................AGTGTTTTAGGTTCT.....................	15	1	20	0.30	6	0	0	0	0	4	1	1
...........................................................................................................................................GGACTGGAGAAGGTACGGTA...........................................................................................	20	3	8	0.25	2	0	0	0	0	2	0	0
..............AGTTTGTTGAGGTTGTGTCGT.......................................................................................................................................................................................................................	21	3	4	0.25	1	0	0	0	0	0	1	0
................................................................................................ATTTCGATATGCGAAT..........................................................................................................................................	16	1	5	0.20	1	1	0	0	0	0	0	0
.....................TTAGGTTGTTTTGTGCGAT..................................................................................................................................................................................................................	19	2	5	0.20	1	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................GTTTCATTGTCGTGGC.....	16	2	20	0.20	4	0	0	0	0	1	0	3
.........................................................ATCCTCTCTCTCTTTC.................................................................................................................................................................................	16	1	17	0.06	1	1	0	0	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	3l:1266027-1266276 -	dsi_14877	CA---CCAA-------CCGTACA-CTGA-AACAAATCC------------------AA--------------CAC-----AACA-------------------CGGTACTA--TACA-------------------------------------------AT-----------------------------ATTATGCC--------TATGAGAGAGA--GA----AAGGAGGAGC--AGAGAAAGTATTCAAATAAAGCTATACG--TTTAAGACATGAA-AAC-TGCGAACCGCT----TG---ATCCTGGCCTATT---CCTTGCCATGCCCT---T-GTCATTC-A--CAAC---AT-TTTC-----CATCTC--TTTGTTTGCAGGCGCGGGAAC------------CGACTCAAAAA------ATCCAAGACAAAGTAA-CG-----------GCA--CAGCCCAT-----
droSec2	scaffold_2:1385193-1385439 -		CA---CCAA-------CCGTACA-CTGA-AACAAATCC------------------AA--------------CAC-----AACA-------------------CAGTACTA--TACA-------------------------------------------AT-----------------------------ATTATGCC--------TATGAGAGAGA--GA----AAGGAGGAGC--AGAGAAAGTATTCAAATAAAGCTATACG--TTTAAGACATGAA-AGC-TGCGAACCGCT----TG---ATCCTGGCGTATT---CCTTGCCATGCCCT---T-GTCATTC-A--CA------T-TTTC-----CATCTC--TTTGTTTGCAGACGCGGGAAC------------CGACTCAAAAA------ATCCAAGACAAAGTAA-CG-----------GCA--CAGCCCAT-----
dm3	chr3L:1342584-1342836 -		CA---CCAA-------CCGTACA-CTGA-AACAAATCC------------------AA--------------CAC-----AACA-------------------CAGTACTA--TACA-------------------------------------------AT-----------------------------ATTATGCC--------TATGAGAGAAAGAGA----AAGGAGGAGC--AGAGAAAGTATTCAAATAAAGCTATACG--TTTAAGACATGAA-AAC-TGCGAACCGCT----TG---ATCCTGGCGCATTC--CCTTGCCATGTCCT---T-GTCATTC-A--TAAC---AT-TTTT-----CATCTC--TTTGTTTGCAGGCGCGGGAAC------------CGACTCAAAAA------ATCCAAGACAAAGTAA-CG-----------GCA--CAGCCCAT-----
droEre2	scaffold_4784:1325463-1325713 -		CA---CCAA-------CCACACA-CTGA-AACAAATTC------------------AA--------------CAC-----AACA-------------------CAGTACTA--TA----------------------------------------------T-----------------------------ATTATGCC--------TATGAG--AAG--GA----GATGAGGAGC-AAGAGAAAGTATTCAAATAAAGCTATACA--TTTAAGACATGAA-AAC-TGCGAACCGCTCGCTTG---ATCCTGGCGTATT---CCTTGC--TGTCCTGTCT-GTCATTC-A--TAAC---AT-TTTT-----CATCTC--TTTGTTTGCAGGCGCGAGAAC------------CGACACAAAAA------GTCCAAGACAAAGTAA-CG-----------GCA--CAGCCCAT-----
droYak3	3L:1301493-1301744 -		CA---CCAACCACAC-ACACACA-CTGACAACAAATCC------------------AA--------------CCC-----AACA-------------------CAGTACTA--TA----------------------------------------------T-----------------------------ATTATGCC--------TATGAG--AAG--GA----AATGAGGAGC-AAGAGAAAGTATTCAAATAAAGCTATACA--TTTAAGACATGAA-AAC-TGCGAACCGCT----TG---GTCCTGGCCTATT---CCTTGC--TGT-----CT-GTCATTC-A--TAACAACAT-TTTT-----CATCTC--TTTGTTTGCAGACGCGAGAAC------------CGACACAAAAA------GTCCAAGACAAAGTAA-CG-----------GCA--CAGCCCAT-----
droEug1	scf7180000409007:166406-166662 -		CA---CAAT-------CCATACA-CTGA-AAAAAAACG------------------AA--------------CACCACACAAAACAAAC--CA---ACACAA---GTACTA--TA----------------------------------------------T-----------------------------ATAATGCC--------TATGAGAGAAT--GA----AAGGAGAAGT-GAGAGAAAGTATTCAAATAAAGCTATTCA--TTTAAGACACGAA-AAA-TGCGAATCGCT----TG---AACTTGGCGTATT---TTTTA-----------CC-GTCATTC-A--TAAC---ATGTTTC-----CATCTC--TCTGTTTTCAGACGCGAAAAT------------CGACACAAAAA------GTCCAAGACAAAGTAA-CT-----------GCA--CAGCCCAT-----
droBia1	scf7180000300910:1447465-1447722 -		CA---CCAT-------GCATACA-CTGA-GACAAATCG------------------AA--------------CACCACACCACACAAAC--CA---ACA----CAGTACTA--TA----------------------------------------------T-----------------------------ATAATGCC--------TATGAG--AAG--GA----AAAGAGAAGT-GAGAGAAAGTATTCAAATAAAGCTAATCA--TTTAAGACACGAA--AC-TGCGAACCGCT----TT---A-CCTGGCGTATT---TCTTA-----------CT-GTCATTC-A--TAAC---ACGTTTT-----CATCTC--TCTGTTTTCAGACGCGAAAAT------------CGGCACAAAAAGTCTAGGTCCAAGACAAAGTAA-GA-----------GCA--CAGCCCAT-----
droTak1	scf7180000414671:330595-330863 -		CT---CCAT-------CCATACA-CTGA-AACAAATCG------------------AA------AAAAAA--CACCACACAACACAAAC--CA---ACACAA---GTACTA--TATA------------------------------------------TAT-----------------------------ACGATGCC--------TATGAGAGGAG--GA----AAGGAGAAGT-GAGAGAAAGTATTCAAATAAAGCTAATCA--TTTAAGACACGAA-AAC-TGCGAACCGCT----TG---CACTCGGCGTATT---TCTTA-----------CT-GTCATTC-A--TAAC---ATGTTTT-----CATCTCTATCTGTTTTCAGACGCGAAAAT------------CGACACAAAAA------GTCCAAGACAAAGTAA-CA-----------GCA--CCGCCCAT-----
droEle1	scf7180000491249:4279445-4279704 +		CACACCCAA-------CCATACA-CTGA-AACAAATCG------------------AA--------------CACCACACAACACAAAC--CA---ACACAA---GTACTA--TA----------------------------------------------T-----------------------------ATAATGCC--------TATGAATGAAT--GA----AAAGAGAAGT-GAGAGAAAGTATTCAAATAAAGCTATTCA--TATAAGACACAGC-AAA-TGCAAACTGCT----TG---TACTTGGCGTATT---TCTTA-----------CT-GTCATTC-A--TAAC---ATGTTTT-----CATCTC--TCTGTTTTCAGGCGCGAAAAT------------CGTCACAAAAA------GTCCAAGACAAAGTAG-CG-----------GCA--CAGCCCAT-----
droRho1	scf7180000779696:5063-5311 +		CACA-CCAT-------CCATACA-CTGA-AACAAATCG------------------AA--------------CACCACACAAC---------------ACAA---GTACTA--TA----------------------------------------------T-----------------------------ATAATGCC--------TATGAAAGAAT--GA----AAAGAGAAGT-GAGAGAAAGTATTCAAATAAAGCTATTCA--TATAAGACACAAC-AAA-TGCGAACTGCT----TG---AACTTTGCGTATT---TCTTA-----------CT-GTCATTC-A--TAAT---ATGTTTT-----CATCTC--TCTGTTTTCAGACGCGAAAAT------------CGTCACAAAAA------GTTCAAGACAAAGTAA-CG-----------GCA--CAGCCCAT-----
droFic1	scf7180000454113:737250-737506 +		CA---CCAT-------CTATACAATTGA-GACAATTTG------------------AA--------------CACCACACAACACAAAC--CA---ACACAA---GTACTA--TT----------------------------------------------T-----------------------------ATAATGCC--------TATGAGAAA-A--GA----AAAGAGAAGT-GAGAAAAAGTATTCAAATAAAGCTAATCA--TTTAAGACACGAA-AA--TGCGAACTGCT----TG---TTCCTGGCGTACT---TCTTAC-------T---T-GTCATTC-A--TAAC---ATGTTTT-----CATCTC--TCTGATTTCAGACGGGAAAAT------------CGGCACAAAAA------GTCCAAGACAAAGTAA-CA-----------GCA--CAGCCCAT-----
droKik1	scf7180000301816:159402-159663 +		CA---CCAC----ACACCATACA-CTGA-AACAAATCA------------------AA------GCAAAA--C-----AC-ACACAAAC--CAACCACA-------CACTT--TATA--------------------------------------------TATT---TCAAT---------------------ATATA--------TATAAAGGGAAGTGC----GAGGAGAAAACGAAAGAAAGTATTCAAATAAAGCTATTCA--TTTAAGAAACGAAAGGGTT--GA-------------------------ATT---TCTTAC--TG------CT-GCCATTCCATATAAC---ATGTTTTTTC--CATCTTTCTCTGTTTTCAGACG---------------------ACACAAAAA------GTCCAAGACTTAGTAA-CAC-------CAAACA--CAGCCCATCCACC
droAna3	scaffold_13337:6570586-6570849 +		CA---CCAT-------CCCTACA-CGGAAAACAAATCG------------------AA--------------CAC-----AACACAAACCCCA---ATACAC---GTACTA--TATA--------------------------------------------TAT-TCAAATAT------------------ATAATGCC--------TATGAGAGAAC--GA----AAAGAGAAGT---GAGAAAGTATTCAAATAAAGCTATATA--TTTAAGTCACAA-------TCGAATCGCT----TG---GAC------TATT---TTT--CTA--------CG-GTCATTT-A--TATA---ATGTTTT-----CATCT---TTTGTTTTCAGACGCGTAAAT------------CGACACAAAAA------GTCCAAGACTAAGTAA-CTGCC-ATCCAAAGCA--CAGCCCAT-----
droBip1	scf7180000396709:302219-302481 +		CA---CACT-------CCCTACA-CGGA-AACAAATCG------------------AA--------------CAC-----AACACAAAC--CA---ATACAC---GTACTA--TATT--------------------------------------------GAA-ACAAATAT------------------ATAATGCC--------TATGAGAGAAC--GA----AAAGAGAAGT---GAGAAAGTATTCAAATAAAGCTATATA--TTTAAGTCACCAG-AAT-TTCAAATCGCT----TG---GAC------TATT---TTTTA-----------TG-GCCATTT-A--TAAC-----GTTTT-----CATCT---TTTGTTTTCAGACGCGTAAAT------------CGACACAAAAA------AACCAAGACAAAGTAA-CAGCC-ATCCAAAGCA--CAGCCCAT-----
dp5	XR_group8:4656275-4656599 +		CACACACAA-------ACATAC---------------GAAATCCCCCCACTCCCACAACACAACA-------CACCACACCACACAA-C--GAACCACACACGCAAT---A--C-----------------------------------------------------AACAAT------------------ATA-AGCCTA------TATGAGAGA-TGAACGAACAGAGAGAAGT-GAGAGAAAGTATTCAAATAAAGCTATATATGTATAAGACACCAA-GAATT--GAGCCTCTTCTATGCTAT-GCC-GAGTACT---TTT--TTATTTATTTATT-ACGATTC-A--TAACTCCTCGTTTT-----CATCTG--TTTGATTTCAGACGCGATAACAACAGAAACAGAAGTCACAAAAT------GTGCAAGAAATCGTAA-CTGCCCATCTCATGCA--CAGACCAT-----
droPer2	scaffold_29:898282-898611 +		CACACACAA-------ACATAC---------------GAAATCCCCCCACTCCCACAACACAACACACCA--CACCACACCACACAA-C--GAACCACACACGCAAT---A--C-----------------------------------------------------AACAAT------------------ATA-AGCCTA------TATGAGAGA-TGAACGAACAGAGAGAAGT-GAGAGAAAGTATTCAAATAAAGCTATATATGTATAAGACACCAA-GAATT--GAGCCTCTTCTATGCTAT-GCC-GAGTACT---TTT--TTATTTATTTATT-ACGATTC-A--TAACTCCTCGTTTT-----CATCTG--TTTGATTTCAGACGCGATAACAACAGAAACAGAAGTCACAAAAT------GTGCAAGAAATCGTAA-CTGCCCATCTCATGCA--CAGACCAT-----
droVir3	scaffold_13049:5744925-5745234 -		CA---CTG-------------------A-CACAAAATA------------------AG------CA----AACAC-----------------------ACACGTAA-ACTATATAGCTATATACATATTAATATATAGATATATATAAAAT---ATATATATATG---TATATATGAATATGTATATAGATATA-TGCATATATGCCTA---ATGA----GT----AAAGAGACAA-AAACGAAAGTATTCAAATAAAGTAA--CA--CTTAAGATACAAA------GCCAAGCCAA----T-------GTGGCGACCT---TTCAA-------TTTATT-ACAAAT--------T---ATGATTTCTGTGCTCTTA--TTTGTTTACAGACGCCCAAA-------------CGCCACATAGT---TGCGCCTAAGACAAAGTTAACTGCCG-------GCAATCGCTCCAT-----
droMoj3	scaffold_6680:4082167-4082487 -		G------------------TACA-CTGA-CACAAATCC------------------AA------CAAAAAAAC--------AC---------------ACACACAATAATA--TAAATATATATATCTATATTTATAAATATATATCTCATTCGATATATATATA---CCTATATAAATATATATATT--TAT-ATGTA--TATGCCTA---ATGAGT--------AAAGAGACAAAAAACGAAAGTATTCAAATAAAGTTA--CA--TTTAAGATACAAA------GCCAAGCCAA----TG---A-GGTGACGTTTTATTTTTGA---AT--TTTATTAAAAAAT--------T---ACGATTTCAATGCTCTTA--TTTGATTACAGACGCCCGAAA------------CACCGCAATAT------GCCAAAAGCAAAGTAAGCTGCCT-------GCA--AAATCGAC-----
droGri2	scaffold_15110:13317930-13318174 +		CA---CCTA--------------------CACAAATCA------------------AA------CA----AACA-----------------------CACAC---ATAATA--TATA--------------------------------------------TACA---TCCAT------------------ATA-AACATATATGCCTAAATG--A----GT----AAAGAGACAA-AAACGAAAGTATTCAAATAAAGTTA--CA--TTTAAGATACAA------TTCAAAGCCAT----TG---T-GCTGACGTTTC---ACTC----------TATT-AAAAAT--------T---ATGATTTCTGTGTTCTTA--TTTGTTTACAGACGCCCAAAA------------AGCCGCATAGT------GCCCAAGACAAAGTAA-CTGCCC-------ACAAACGAACCTT-----

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CA---CCAA-------CCGTACA-CTGA-AACAAATCC------------------AA--------------CAC-----AACA-------------------CGGTACTA--TACA-------------------------------------------AT-----------------------------ATTATGCC--------TATGAGAGAGA--GA----AAGGAGGAGC--AGAGAAAGTATTCAAATAAAGCTATACG--TTTAAGACATGAA-AAC-TGCGAACCGCT----TG---ATCCTGGCCTATT---CCTTGCCATGCCCT---T-GTCATTC-A--CAAC---AT-TTTC-----CATCTC--TTTGTTTGCAGGCGCGGGAAC------------CGACTCAAAAA------ATCCAAGACAAAGTAA-CG-----------GCA--CAGCCCAT-----	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
................................................................................................................................................................................................TTATGCC--------TATGAGAGAGA--.................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................A--GA----AAGGAGGAGC--AGAGAAAGTATTA..................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................TATACG--TTTAAGACATGA.....................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TATGAGAGAGA--GA----AAGGAGGAGC--AGAA...........................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................TATTCAAATAAAGCTATACG--TTTAAGA..........................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAAA------ATCCAAGACAAAG...................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................TA--TACA-------------------------------------------AT-----------------------------ATTATGCC--------TATGAGAGAGA--.................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................TACTA--TACA-------------------------------------------AT-----------------------------ATTATGCC--------TATGAGAGAGA--.................................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................TACA-------------------------------------------AT-----------------------------ATTATGCC--------TATGAGAGAGA--GA----...........................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................TA--TACA-------------------------------------------AT-----------------------------ATTATGCC--------TATGAGAGA.....................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

CA---CCAA-------CCGTACA-CTGA-AACAAATCC------------------AA--------------CAC-----AACA-------------------CAGTACTA--TACA-------------------------------------------AT-----------------------------ATTATGCC--------TATGAGAGAGA--GA----AAGGAGGAGC--AGAGAAAGTATTCAAATAAAGCTATACG--TTTAAGACATGAA-AGC-TGCGAACCGCT----TG---ATCCTGGCGTATT---CCTTGCCATGCCCT---T-GTCATTC-A--CA------T-TTTC-----CATCTC--TTTGTTTGCAGACGCGGGAAC------------CGACTCAAAAA------ATCCAAGACAAAGTAA-CG-----------GCA--CAGCCCAT-----	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............................................................................................................................................................................................................................................................TAAAGCTATACG--TTTAAGACATG......................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0

dm3

CA---CCAA-------CCGTACA-CTGA-AACAAATCC------------------AA--------------CAC-----AACA-------------------CAGTACTA--TACA-------------------------------------------AT-----------------------------ATTATGCC--------TATGAGAGAAAGAGA----AAGGAGGAGC--AGAGAAAGTATTCAAATAAAGCTATACG--TTTAAGACATGAA-AAC-TGCGAACCGCT----TG---ATCCTGGCGCATTC--CCTTGCCATGTCCT---T-GTCATTC-A--TAAC---AT-TTTT-----CATCTC--TTTGTTTGCAGGCGCGGGAAC------------CGACTCAAAAA------ATCCAAGACAAAGTAA-CG-----------GCA--CAGCCCAT-----	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................................................................................................................................................................................................TTATGCC--------TATGAGAGAAAGAGA----AAGGA......................................................................................................................................................................................................................................................	27	1	13.00	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	6	0	0	0	0	0
.................................................................................................................................................................................................TATGCC--------TATGAGAGAAAGAGA----AAGGA......................................................................................................................................................................................................................................................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
.................................................................................................................TACA-------------------------------------------AT-----------------------------ATTATGCC--------TATGAGAGAAAGA.................................................................................................................................................................................................................................................................	27	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0
...................................................................................................................CA-------------------------------------------AT-----------------------------ATTATGCC--------TATGAGAGAAAGAGA----...........................................................................................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................GGAAC------------CGACTCAAAAA------ATCCAAGA........................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................TCAAATAAAGCTATACG--TTTAAGACATG......................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................AATAAAGCTATACG--TTTAAGACATGAA-AA.................................................................................................................................................................................................	29	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................T-----------------------------ATTATGCC--------TATGAGAGAAAGAGA----...........................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAA------ATCCAAGACAAAGTAA-...............................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................C-TGCGAACCGCT----TG---ATCCTGGCGC.................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................AAAGCTATACG--TTTAAGACATGA.....................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGGCGCGGGAAC------------CGACT............................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................ATACG--TTTAAGACATGAA-AAA-...............................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................C--AGAGAAAGTATTCAAATAAAGCTAT......................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAGACAAAGTAA-CG-----------GCA--.............	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................TA--TACA-------------------------------------------AT-----------------------------ATTATGCC--------TATGAGAGAAA...................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................AGACATGAA-AAC-TGCGAACCG......................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................ATGCC--------TATGAGAGAAAGAGA----AAGGA......................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGACAAAGTAA-CG-----------GCA--CAGCCC.......	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................CA-CTGA-AACAAATCC------------------AA--------------CAC-----AACA-------------------CAG...................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................TC--TTTGTTTGCAGGCGCGGG................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAAGTAA-CG-----------GCA--CAGCCCA......	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAAAA------ATCCAAGACAAAGT..................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................GACTCAAAAA------ATCCAAGACAA.....................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................AGGAGC--AGAGAAAGTATTC..................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................TATGAGAGAAAGAGA----AAGGAGGAGC--AGA............................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................AAGGAGGAGC--AGAGAAAGTATTC..................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................CA-------------------------------------------AT-----------------------------ATTATGCC--------TATGAGAGAAAGAGA----AA.........................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................ATAAAGCTATACG--TTTAAGAC.........................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................TACG--TTTAAGACATGAA-AAC-TGCGAACC.......................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................ATACG--TTTAAGACATGAA-A..................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................ACA-------------------CAGTACTA--TACA-------------------------------------------AT-----------------------------AT............................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................CA-------------------------------------------AT-----------------------------ATTATGCC--------TATGAGAGAAAGA.................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................................AAGAGA----AAGGAGGAGC--AGAGAAAGT......................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................TAAAGCTATACG--TTTAAGACATGAA-A..................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................GCT----TG---ATCCTGGCGCATTC--CCTTGC.....................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TGAGAGAAAGAGA----AAGGAGGAGC--A..............................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TATTCAAATAAAGCTATACG--TTTAAGA..........................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................AT-----------------------------ATTATGCC--------TATGAGAGAAAGAGA----AA.........................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................ATGAGAGAAAGAGA----AAGGAGG....................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................AACAAATCC------------------AA--------------CAC-----AACA-------------------CAGTACTA--TAC.........................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CA---CCAA-------CCACACA-CTGA-AACAAATTC------------------AA--------------CAC-----AACA-------------------CAGTACTA--TA----------------------------------------------T-----------------------------ATTATGCC--------TATGAG--AAG--GA----GATGAGGAGC-AAGAGAAAGTATTCAAATAAAGCTATACA--TTTAAGACATGAA-AAC-TGCGAACCGCTCGCTTG---ATCCTGGCGTATT---CCTTGC--TGTCCTGTCT-GTCATTC-A--TAAC---AT-TTTT-----CATCTC--TTTGTTTGCAGGCGCGAGAAC------------CGACACAAAAA------GTCCAAGACAAAGTAA-CG-----------GCA--CAGCCCAT-----	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.................................................................................................................TA----------------------------------------------T-----------------------------ATTATGCC--------TATGAG--AAG--GA----GAT........................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................GGAGC-AAGAGAAAGTATT...................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................ATGAG--AAG--GA----GATGAGGAGC-AAGA............................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0

droYak3

CA---CCAACCACAC-ACACACA-CTGACAACAAATCC------------------AA--------------CCC-----AACA-------------------CAGTACTA--TA----------------------------------------------T-----------------------------ATTATGCC--------TATGAG--AAG--GA----AATGAGGAGC-AAGAGAAAGTATTCAAATAAAGCTATACA--TTTAAGACATGAA-AAC-TGCGAACCGCT----TG---GTCCTGGCCTATT---CCTTGC--TGT-----CT-GTCATTC-A--TAACAACAT-TTTT-----CATCTC--TTTGTTTGCAGACGCGAGAAC------------CGACACAAAAA------GTCCAAGACAAAGTAA-CG-----------GCA--CAGCCCAT-----	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................CACA-CTGACAACAAATCC------------------AA--------------CCC-----.............................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................AATGAGGAGC-AAGAGAAAGTATTC..................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................ACCGCT----TG---GTCCTGGCCTATT---CCTTGC--...................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................A----------------------------------------------T-----------------------------ATTATGCC--------TATGAG--AAG--G................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

CA---CAAT-------CCATACA-CTGA-AAAAAAACG------------------AA--------------CACCACACAAAACAAAC--CA---ACACAA---GTACTA--TA----------------------------------------------T-----------------------------ATAATGCC--------TATGAGAGAAT--GA----AAGGAGAAGT-GAGAGAAAGTATTCAAATAAAGCTATTCA--TTTAAGACACGAA-AAA-TGCGAATCGCT----TG---AACTTGGCGTATT---TTTTA-----------CC-GTCATTC-A--TAAC---ATGTTTC-----CATCTC--TCTGTTTTCAGACGCGAAAAT------------CGACACAAAAA------GTCCAAGACAAAGTAA-CT-----------GCA--CAGCCCAT-----	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CA---CCAT-------GCATACA-CTGA-GACAAATCG------------------AA--------------CACCACACCACACAAAC--CA---ACA----CAGTACTA--TA----------------------------------------------T-----------------------------ATAATGCC--------TATGAG--AAG--GA----AAAGAGAAGT-GAGAGAAAGTATTCAAATAAAGCTAATCA--TTTAAGACACGAA--AC-TGCGAACCGCT----TT---A-CCTGGCGTATT---TCTTA-----------CT-GTCATTC-A--TAAC---ACGTTTT-----CATCTC--TCTGTTTTCAGACGCGAAAAT------------CGGCACAAAAAGTCTAGGTCCAAGACAAAGTAA-GA-----------GCA--CAGCCCAT-----	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CT---CCAT-------CCATACA-CTGA-AACAAATCG------------------AA------AAAAAA--CACCACACAACACAAAC--CA---ACACAA---GTACTA--TATA------------------------------------------TAT-----------------------------ACGATGCC--------TATGAGAGGAG--GA----AAGGAGAAGT-GAGAGAAAGTATTCAAATAAAGCTAATCA--TTTAAGACACGAA-AAC-TGCGAACCGCT----TG---CACTCGGCGTATT---TCTTA-----------CT-GTCATTC-A--TAAC---ATGTTTT-----CATCTCTATCTGTTTTCAGACGCGAAAAT------------CGACACAAAAA------GTCCAAGACAAAGTAA-CA-----------GCA--CCGCCCAT-----	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CACACCCAA-------CCATACA-CTGA-AACAAATCG------------------AA--------------CACCACACAACACAAAC--CA---ACACAA---GTACTA--TA----------------------------------------------T-----------------------------ATAATGCC--------TATGAATGAAT--GA----AAAGAGAAGT-GAGAGAAAGTATTCAAATAAAGCTATTCA--TATAAGACACAGC-AAA-TGCAAACTGCT----TG---TACTTGGCGTATT---TCTTA-----------CT-GTCATTC-A--TAAC---ATGTTTT-----CATCTC--TCTGTTTTCAGGCGCGAAAAT------------CGTCACAAAAA------GTCCAAGACAAAGTAG-CG-----------GCA--CAGCCCAT-----	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CACA-CCAT-------CCATACA-CTGA-AACAAATCG------------------AA--------------CACCACACAAC---------------ACAA---GTACTA--TA----------------------------------------------T-----------------------------ATAATGCC--------TATGAAAGAAT--GA----AAAGAGAAGT-GAGAGAAAGTATTCAAATAAAGCTATTCA--TATAAGACACAAC-AAA-TGCGAACTGCT----TG---AACTTTGCGTATT---TCTTA-----------CT-GTCATTC-A--TAAT---ATGTTTT-----CATCTC--TCTGTTTTCAGACGCGAAAAT------------CGTCACAAAAA------GTTCAAGACAAAGTAA-CG-----------GCA--CAGCCCAT-----	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CA---CCAT-------CTATACAATTGA-GACAATTTG------------------AA--------------CACCACACAACACAAAC--CA---ACACAA---GTACTA--TT----------------------------------------------T-----------------------------ATAATGCC--------TATGAGAAA-A--GA----AAAGAGAAGT-GAGAAAAAGTATTCAAATAAAGCTAATCA--TTTAAGACACGAA-AA--TGCGAACTGCT----TG---TTCCTGGCGTACT---TCTTAC-------T---T-GTCATTC-A--TAAC---ATGTTTT-----CATCTC--TCTGATTTCAGACGGGAAAAT------------CGGCACAAAAA------GTCCAAGACAAAGTAA-CA-----------GCA--CAGCCCAT-----	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CA---CCAC----ACACCATACA-CTGA-AACAAATCA------------------AA------GCAAAA--C-----AC-ACACAAAC--CAACCACA-------CACTT--TATA--------------------------------------------TATT---TCAAT---------------------ATATA--------TATAAAGGGAAGTGC----GAGGAGAAAACGAAAGAAAGTATTCAAATAAAGCTATTCA--TTTAAGAAACGAAAGGGTT--GA-------------------------ATT---TCTTAC--TG------CT-GCCATTCCATATAAC---ATGTTTTTTC--CATCTTTCTCTGTTTTCAGACG---------------------ACACAAAAA------GTCCAAGACTTAGTAA-CAC-------CAAACA--CAGCCCATCCACC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CA---CCAT-------CCCTACA-CGGAAAACAAATCG------------------AA--------------CAC-----AACACAAACCCCA---ATACAC---GTACTA--TATA--------------------------------------------TAT-TCAAATAT------------------ATAATGCC--------TATGAGAGAAC--GA----AAAGAGAAGT---GAGAAAGTATTCAAATAAAGCTATATA--TTTAAGTCACAA-------TCGAATCGCT----TG---GAC------TATT---TTT--CTA--------CG-GTCATTT-A--TATA---ATGTTTT-----CATCT---TTTGTTTTCAGACGCGTAAAT------------CGACACAAAAA------GTCCAAGACTAAGTAA-CTGCC-ATCCAAAGCA--CAGCCCAT-----	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
....................................................................................................................................................................................................................GAGAAC--GA----AAAGAGAAGT---GAGAAA........................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
.....................................G------------------AA--------------CAC-----AACACAAACCCCA---ATACAC---....................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................AT------------CGACACAAAAA------GTCCAAGACC......................................	23	1	1.00	1	0	1	0	0	0	0

droBip1

CA---CACT-------CCCTACA-CGGA-AACAAATCG------------------AA--------------CAC-----AACACAAAC--CA---ATACAC---GTACTA--TATT--------------------------------------------GAA-ACAAATAT------------------ATAATGCC--------TATGAGAGAAC--GA----AAAGAGAAGT---GAGAAAGTATTCAAATAAAGCTATATA--TTTAAGTCACCAG-AAT-TTCAAATCGCT----TG---GAC------TATT---TTTTA-----------TG-GCCATTT-A--TAAC-----GTTTT-----CATCT---TTTGTTTTCAGACGCGTAAAT------------CGACACAAAAA------AACCAAGACAAAGTAA-CAGCC-ATCCAAAGCA--CAGCCCAT-----	Size	Hit Count	Total Norm	Total
No Reads

dp5

CACACACAA-------ACATAC---------------GAAATCCCCCCACTCCCACAACACAACA-------CACCACACCACACAA-C--GAACCACACACGCAAT---A--C-----------------------------------------------------AACAAT------------------ATA-AGCCTA------TATGAGAGA-TGAACGAACAGAGAGAAGT-GAGAGAAAGTATTCAAATAAAGCTATATATGTATAAGACACCAA-GAATT--GAGCCTCTTCTATGCTAT-GCC-GAGTACT---TTT--TTATTTATTTATT-ACGATTC-A--TAACTCCTCGTTTT-----CATCTG--TTTGATTTCAGACGCGATAACAACAGAAACAGAAGTCACAAAAT------GTGCAAGAAATCGTAA-CTGCCCATCTCATGCA--CAGACCAT-----	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................................CACACAA-C--GAACCACACACGC.....................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................AAAGCTATATATGTATAAGACACC......................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGAAACAGAAGTCAC...........................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...................TAC---------------GAAATCCCCCCACTCCCACA....................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................AC---------------GAAATCCCCCCACTCCCACAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TGAGAGA-TGAACGAACAGAGAGAAGT-G...............................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................TTTATT-ACGATTC-A--TAACTCCTCGTTTT-----T.........................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TGAGAGA-TGAACGAACAGAGA......................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TA-AGCCTA------TATGAGAGA-TGAACGAACA..........................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................ATGAGAGA-TGAACGAACAGAGAGAA...................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1
...................TAC---------------GAAATCCCCCCACTCCCACAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................CTATATATGTATAAGACACCA.....................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....................................................CACAACACAACA-------CACCACACCAC..........................................................................................................................................................................................................................................................................................................................................................................................................	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0

droPer2

CACACACAA-------ACATAC---------------GAAATCCCCCCACTCCCACAACACAACACACCA--CACCACACCACACAA-C--GAACCACACACGCAAT---A--C-----------------------------------------------------AACAAT------------------ATA-AGCCTA------TATGAGAGA-TGAACGAACAGAGAGAAGT-GAGAGAAAGTATTCAAATAAAGCTATATATGTATAAGACACCAA-GAATT--GAGCCTCTTCTATGCTAT-GCC-GAGTACT---TTT--TTATTTATTTATT-ACGATTC-A--TAACTCCTCGTTTT-----CATCTG--TTTGATTTCAGACGCGATAACAACAGAAACAGAAGTCACAAAAT------GTGCAAGAAATCGTAA-CTGCCCATCTCATGCA--CAGACCAT-----	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.......................................................................................................................................................................................................................A-TGAACGAACAGAGAGAAGT-GAGAGAA.........................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	2
......................................................................................................................................................................................................................GA-TGAACGAACAGAGAGAAGT-................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0
..................................................................................................................................................................................................................................AGAGAGAAGT-GAGAGAAAGT......................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................GAGAGAAGT-GAGAGAAAG.......................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1

droVir3

CA---CTG-------------------A-CACAAAATA------------------AG------CA----AACAC-----------------------ACACGTAA-ACTATATAGCTATATACATATTAATATATAGATATATATAAAAT---ATATATATATG---TATATATGAATATGTATATAGATATA-TGCATATATGCCTA---ATGA----GT----AAAGAGACAA-AAACGAAAGTATTCAAATAAAGTAA--CA--CTTAAGATACAAA------GCCAAGCCAA----T-------GTGGCGACCT---TTCAA-------TTTATT-ACAAAT--------T---ATGATTTCTGTGCTCTTA--TTTGTTTACAGACGCCCAAA-------------CGCCACATAGT---TGCGCCTAAGACAAAGTTAACTGCCG-------GCAATCGCTCCAT-----	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAGTTAACTGCCG-------GC................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
......................................................................................................................................................................................................................................................................................................................................................................................................ACGCCCAAA-------------CGCCACATAGT---TGC................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................CCACATAGT---TGCGCCTAAGACAAAG...................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................AAAT---ATATATATATG---TATAT................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

G------------------TACA-CTGA-CACAAATCC------------------AA------CAAAAAAAC--------AC---------------ACACACAATAATA--TAAATATATATATCTATATTTATAAATATATATCTCATTCGATATATATATA---CCTATATAAATATATATATT--TAT-ATGTA--TATGCCTA---ATGAGT--------AAAGAGACAAAAAACGAAAGTATTCAAATAAAGTTA--CA--TTTAAGATACAAA------GCCAAGCCAA----TG---A-GGTGACGTTTTATTTTTGA---AT--TTTATTAAAAAAT--------T---ACGATTTCAATGCTCTTA--TTTGATTACAGACGCCCGAAA------------CACCGCAATAT------GCCAAAAGCAAAGTAAGCTGCCT-------GCA--AAATCGAC-----	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...................................................................................................................................................................................................................................................................................................AGCCAA----TG---A-GGTGACGTTTTAT............................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................A--CA--TTTAAGATACAAA------GCCA..........................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................ATGTA--TATGCCTA---ATGAGT--------...........................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................TATA---CCTATATAAATATATAT....................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0

droGri2

CA---CCTA--------------------CACAAATCA------------------AA------CA----AACA-----------------------CACAC---ATAATA--TATA--------------------------------------------TACA---TCCAT------------------ATA-AACATATATGCCTAAATG--A----GT----AAAGAGACAA-AAACGAAAGTATTCAAATAAAGTTA--CA--TTTAAGATACAA------TTCAAAGCCAT----TG---T-GCTGACGTTTC---ACTC----------TATT-AAAAAT--------T---ATGATTTCTGTGTTCTTA--TTTGTTTACAGACGCCCAAAA------------AGCCGCATAGT------GCCCAAGACAAAGTAA-CTGCCC-------ACAAACGAACCTT-----	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.....................................................................................................................................................................................................................................GAGACAA-AAACGAAAGTA.....................................................................................................................................................................................................................................	18	1	1.00	1	1	0

dsi_14877

3l:1266077-1266226 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-1.2	-1.1	-1.1