dsi_14872

exon [2r_16007563_16009077_+]; five_prime_UTR [2r_16007563_16007742_+]; intron [2r_16006407_16007562_+]

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CATTTTCGAGGTTTTAATGCGCAACAACTGCGACTTGTTGTGTGTTGGTTAGGCGACAAAAAACAAACAAAAGTAACGTTGAGAATTTAGAAAGCCCAATGCAAACGAACGCACACACAAGCACTTACTCCTGTCGGTGTGAGCTGCATTGTACTTCCGAAGACCCAAGCCCAACTTAATAATTTTCCCCAAACTCACAGTGTAAGAACAATAAACACGCCAAGCGCCACTTGAAAAAGAAATAAGAAAA ************************************************....................((((...(((.....(((.((.((..(((((((.......((.(((((..(((........)))..))))).)))))))))..)))).)))......)))...)))).......................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	M053 female body	M024 male body	M025 embryo	GSM343915 embryo	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs
.............................................................................................................................................AGCTGCATTGTACTTCCGAAGACCCA...................................................................................	26	0	1	2.00	2	0	2	0	0	0	0	0	0	0
....................GCAACAACTGCGACTTGTTGT.................................................................................................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0
...........TTTTAATGCGCAACAACTG............................................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0
...TTTCGAGGTTTTAATGCGCAACAACTG............................................................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0	0	0	0
...............................................................................................................................CTCCTGTCGGTGTGAGCTGC.......................................................................................................	20	0	1	1.00	1	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................................AAGAACAATAAACACGCC.............................	18	0	1	1.00	1	0	0	1	0	0	0	0	0	0
..........................................................................................................................ACTTACTCCTGTCGGTGG..............................................................................................................	18	1	1	1.00	1	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................GTAAGAACAATAAACACGCC.............................	20	0	1	1.00	1	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................CAACTAAATAATTATCCCCA...........................................................	20	2	3	0.33	1	0	0	0	0	1	0	0	0	0
..............................CGCCTTGTTCTGTGTTGTTTA.......................................................................................................................................................................................................	21	3	9	0.11	1	0	0	0	0	0	0	1	0	0
......................................................................................................................................CGGTGTCTGCTGCATTGGAC................................................................................................	20	3	10	0.10	1	0	0	0	0	0	0	0	1	0
.......................ACAACTGCGACTGGT....................................................................................................................................................................................................................	15	1	14	0.07	1	0	0	0	0	0	0	0	0	1
.................................................................................................................................GCTGTCGGTGTGAGCTC........................................................................................................	17	2	14	0.07	1	0	0	0	0	0	1	0	0	0
..................................TTGTTGTGTGTTGGTC........................................................................................................................................................................................................	16	1	14	0.07	1	0	0	0	0	0	1	0	0	0

GTAAAAGCTCCAAAATTACGCGTTGTTGACGCTGAACAACACACAACCAATCCGCTGTTTTTTGTTTGTTTTCATTGCAACTCTTAAATCTTTCGGGTTACGTTTGCTTGCGTGTGTGTTCGTGAATGAGGACAGCCACACTCGACGTAACATGAAGGCTTCTGGGTTCGGGTTGAATTATTAAAAGGGGTTTGAGTGTCACATTCTTGTTATTTGTGCGGTTCGCGGTGAACTTTTTCTTTATTCTTTT ************************************************....................((((...(((.....(((.((.((..(((((((.......((.(((((..(((........)))..))))).)))))))))..)))).)))......)))...)))).......................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	SRR902009 testis	GSM343915 embryo
.....................................................................................................GTTTGCTTGCGTGTGTGTTCG................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
......................................................................................................................................................................................AAAAGGGATTTGAGTGT...................................................	17	1	3	0.33	1	0	1	0	0	0
..................................................................................................................................................................TGGGTGTGGGTTGAAGTATTA...................................................................	21	3	4	0.25	1	0	1	0	0	0
...................................................................................................................................................................................................................ATTTGTACGGTTCGGGGT.....................	18	2	7	0.14	1	0	0	0	1	0
............................................................................................................................................................................................GCTTTGAGTGTCACA...............................................	15	1	10	0.10	1	0	0	1	0	0
..............................................................................................................................................................................................................TTGGGATTTGTGCGGTCCG.........................	19	3	10	0.10	1	0	0	0	0	1
................TTCCCGATGTTGACGCTGAA......................................................................................................................................................................................................................	20	3	10	0.10	1	0	0	1	0	0
...................................................................................................................................................TAAAATGAAGGCTACTGGTT...................................................................................	20	3	11	0.09	1	0	1	0	0	0

Species	Coordinate	ID	Alignment
droSim2	2r:16007363-16007612 +	dsi_14872	CATTTTCGAGGTTTTAATGCGCAACAACTGCGACTTGTT-GTGTGT----------------------------TGGTTAGGCGA-CAAA----AAA---------------------CAAA---------CAAA------AGTA--A----------------------CGTTGAGAAT-TTAGAAAG-CCCAATGCAAACGAA-CGCACACACA-----AGCACTTACTCCTGTCGG----------------T--GT---GAG---CTGCATTGTACTTCCGAA--------------------G-----------------------------------------------------------------ACCCAAGCCCA------------------------------------------A-CTTAATAATTTTC---------------CCC-AA------ACTCA---CAGTGTAAGAACAATAAA--CAC-GCCAAGCGCCACT-------T----G--AAAAA--GAAATAAGAAAA
droSec2	scaffold_1:12874610-12874859 +		CATTTTCGAGGTTTTAATGCGCAACAACTGCGACTTGTT-CTGTGT----------------------------TGGTTAGGCGA-CAAA----AAA---------------------CAAA---------CAAA------AGTA--A----------------------CGTTGAGAAT-TTAGAAAG-CCCAATGCAAACGAA-CGCACACACA-----AGCAATTACTCCTGTCGG----------------T--GT---GAG---CTGCATTGTACTTCCGAA--------------------G-----------------------------------------------------------------ACCCAAGCCCA------------------------------------------A-CTTAATAATTTTC---------------CCC-AA------ACTCA---CAGTGTAAGAACAATAAA--CAC-GCCAAGCGCCACT-------T----G--AAAAA--GAAATAAGAAAA
dm3	chr2R:15356095-15356344 +		CATTTTCGAGGTTTTAATGCGCAACAACTGCGACTTGTT-GTGTGT----------------------------TGGTTAGACGA-CAAA----AAA---------------------CAAA---------CAAA------AGTA--A----------------------CGTTGAGAAT-TTAGAAAG-CCCAATGCAAACGAA-CGCACACACA-----AGCACTTACTCCTGTCGG----------------T--GT---GAG---CTGCATTGTACTTCCGAA--------------------G-----------------------------------------------------------------CCCCAAGACCA------------------------------------------A-TTTAATAATTTTC---------------CCC-AA------ACTCA---CAGTGTAAGAACAATAAA--CAC-GCCAAGCGCAACT-------T----G--AAAAA--GAAATAAGAAAA
droEre2	scaffold_4845:9554771-9555030 +		CATTTTCGAGGTTTTAATGCGCAACAACTGCGACTTGTT-GTGTGT----------------------------TGGCTAGGCGA-CAAA----AAA-----------CAAACAAAAACAAAAAAAAAACACGAA------AGTA--A----------------------TGTTGAGAAT-TTAGAAAG-CCCAATGCAAACGGA-CGCACACACA-----TTCAGTTACTTCTGTCGG----------------T--GT---GAG---CTGAATTGTATTTCCGAA--------------------G------------------------------C-------------------------------------------AA------------------------------------------A-GTTAATAAATTTT---------------A-C-AA------ACTCA---CAGTGTAAGAACAATAAA--CAC-GCCAAGCGCCATT-------T----G--AAAAA--GAAATAAGAAAA
droYak3	2R:13819863-13820121 -		CATTTTCGAGGTTTTAATGCGCAACAACTGCGACTTGTT-GTGTGT----------------------------TTGTTAGGCCA-CAGA----AAA-----------GAAACAAAAACAAA---------CAAA------ACTA--A----------------------CGTTAAGAAT-TTAGAAAG-CCCAATGCAAACGGA-CGCACACACA-----TTCGGTTACCCCTGTCGG----------------T--GT---GAG---CTGCATTGTACTTCCGAA--------------------G-----------------------------------------------------------------CCTCAAACCCA------------------------------------------A-GTTAATAATTTTT---------------C-C-GA------ACTCA---CAGTGTAAGAACAATAAA--CAC-GCCAAGCGCCAGT-------T----G--AAAAA--GAAATAAAATAA
droEug1	scf7180000409474:2599192-2599470 -		CATTTTCGAGGTTTTAATGCGCAACAACTGCGACTTGTT-GTGTGT----------------------------TGGTTAGGCGAACAAAAAAAAAA---------------------CAAA---------CAAT------AGCA--A----------------------CGTTGAGAAT-TTAGAAAG-CCCAATGTAAAC---ACGCACACAGATA---CACAGCTC--CTTATAGG----------------T--GT---GAG---CTGCATTGTGCTTCCGATTTTCTGT------------------------------------------GTTAAA-------------------------GCGAAACTTCAAGCTCA------------------------------------------ATCTTAATAATTTTC---------------TCT-AA------ACTCA---CAGTGTAAGAACAATAAT--CAC-GCCAAGCGCCAGTTAAAACAA----G--AAAGA--ATAGAAATAAAA
droBia1	scf7180000302143:2846885-2847176 +		CATTTTCGAGGTTTTAATGCGCAACAACTGCGACTTGTT-GTGTGT----------------------------TGGATAGGCGA-CAAA----ATG-------AAAAAACACAAAAACAAA---------CAAA------AGCA--G----------------------CGTTGAGAAT-TTAGAAAG-CCCAATGTAAAC---ACGCACACTCGCACACTGCAGTTCGCTCTGTGTA----------------T--GT---GAG---CTGCATTGTGCTTCCGATTTTGTGT------------------------------------------GGCAAA-------------------------GCGAAATCTCGAGCTCA------------------------------------------ATCTCAATAATGTTTCC-------------CCCAAA------ACCCA---CAGTGTAAGAACAATAAA--CAC-GCCAAGCGCCAGT-------TTTT-G--AAAAA--AGCAAGAAAAAA
droTak1	scf7180000415910:151429-151713 -		CATTTTCGAGGTTTTAATGCGCAACAACTGCGACTTGTT-GTGTGT----------------------------TGGTTAGGCGA-CAAA----AAA---------------------CAAA---------CAAA------AGCT--A----------------------CGTTGAGAAT-TTAGAAAG-CCCAATGTAAAC---ACGCACACTGAGAAAGTGCAGTTCCCTCGGTATT----------------T--GT---GAG---CTGCATTGTACTTCCGATTTTCTGT------------------------------------------GGCAAA-------------------------GCGAAATCCCTAGCTCAAAC------------------------------------TCAATCTCAATAAATTTC---------------CCCAAA------ACTCA---CAGTGTAAGAACAATAAA--CAC-GCCAAGCGCCAGT-------TTTGAAGAAAAAA--GAAAGAAAGAAA
droEle1	scf7180000491201:1804302-1804553 +		CATTTTCGAGGTTTTAATGCGCAACAACTGCGACTTGTT-GTGTGT----------------------------TGGTTAGGCGA-CAAA----AAA---------------------CAAA---------CAAA------AGCT--G----------------------CGTTGAGAAT-TTAGAAAG-CCCAATGTAAGC---A--CACACACA-----TGCAGTT--------CGG----------------T--GT---GAG---CTGCATTGTACTGCCGATTTTCAGT------------------------------------------TACAAA-------------------------A-AAAATCTC-----CA------------------------------------------A-TTTAATAAATTTT---------------CCT-TA------ACTCA---CAGTGTAAGAACATTAAATACAC-GCCAAGCGCCAGT-------T----G--AAAAA--TATATAAAAAAG
droRho1	scf7180000780066:286339-286593 -		CATTTTCGAGGTTTTAATGCGCAACAACTGCGACTTG----TGTGT----------------------------TGGTTAGGCGA-CAAAA-AAAAA---------------------CAAA---------CAAG------AGCT--G----------------------CGTTGAGAAT-TTAGAAAG-CCCAATGTAAGC---A----CACTCA-----TGCAGTTC--CCTTTCGG----------------G--CT---GAG---CTGCATTGTACTTCCGATTTTCGGT------------------------------------------GGCAAA-------------------------GCAAAATCACAAG------------------------------------------------TTTAATAATTTTT----------------CA-AA------ACTCA---CAGTGTAAGAACAATAAATTTAT-GCCAAGTGCCAGT-------T-------AAAAA--TATATAAAAAAG
droFic1	scf7180000454039:645676-645937 +		CATTTTCGAGGTTTTAATGCGCAACAACTGCGACTTGTT-GTGTGTTG-----------------------GTTAGGTTAGGCGA-CAAA----AAA---------------------CAAA---------CAAA------AGCT--C----------------------CGTCGAGAAT-TTAGAAAGCCCCAATGTAAAC---A--CACATGCA-----AGCAGTTC--CCTGTTGG----------------T--GT---TAGCTGCTGCATTGTACTTGCGACTTTCTGT------------------------------------------G-TAAA-------------------------ACGAAAACTCGAGC------------------------------------------------TCAATACTTTTT---------------CCC-AA------ACTCA---CAGTGTAAGAACAATAAA--CAC-GCCAAGCGCTAGT-------T----G--AAAAA--GA---AGGAAAC
droKik1	scf7180000302471:1615582-1615892 +		CATTTTCGAGGTTTTAATGCGCAACAACTGCGACT--------------------------------------------AGGAGA-CAAA----AAAATATATAATAAAAAAAAAAAACAAA---------CAAA------AGCT--C----------------------CGTTGAGAAT-TTAGAAAG-CCAAATGTAAAC---A------CACA-----CGCAGCT----------GTGTGAGTGTAGGTGTAGGTGTGTTGCA---TTGCGTTGTACTTCCGAA--------------------AACTAAAAAAAGAACAAACCCGGGTCGTTAGCAAA-------------------------GCAAAATCTTAAGCCG----CCAC--------------ACACGCTCGCACACAAAGTCCA-TTCAATAATTTTC---C------AAAAA-CT-AA------ACTTC---CAGTGTAAGAACAATAAA--CA-------------------------------GAAA--GCAAAAAGAAAA
droAna3	scaffold_13266:9923826-9924179 -		CATTTTCGAGGTTTTAATGCGCAACAACTGCGACTTGTT-GTGCGTTG-----------------------GC-TGGCTGGGCGA-CAAA----AAA-----------AAAAAAAAAACAAA---------CAGAAGGCAGAGCTCGC----------------------CATCGAGAATTTTAGAAAG-CCCAATGTAAAC---A------CTCA-----TGCACCTT-------C----------------------G---CA-CAGGTGTATTGTACTTCCGT-TTTCGGTTCAGGAACTACAGAGCTACAGAAAGAACAAA--------------AAAAAAAACGCTTCAAACTGTTTG-------AAGCTTCAAGCCC----TCACACACACACACACTGACACGCGCGCGCAGA------A-AC---TAATTTTTTT-TTCCCCGAAAAA-CTAAA------ACTTA---CAGTGTAAGAACAATAAG------------CGAACAT-------T----AA-AAAAA--AGAAGAAATAAA
droBip1	scf7180000396427:1066068-1066390 -		CATTTTCGAGGTTTTAATGCGCAACAACTGCGACTTGTT-GTGCGTTGCGT-----------------TGTGT-TGGCTGGGCGA-CAAA---AAAA---------------------CAAA---------CAGAGGGCCGAGCT--C----------------------CATCGAGAAT-TTAGAAAG-CCAAATGTAAAC---A------CACA-----TGCACCTT-----------------------------GG---CAG---GTGTATCGTACTTCCGTTTTTCGGTTC----------------------------------------G--GAA-AAAAGG-------CAGTTTG-GAAGCAGAGCTTCAAGCTCCAACTCTCACCCAC--ACACTCACACGCGCGCGCAGA------A----ACTAATTTTTCCCT------TCAAA-CT-TA------ACTCT---CAGTGTAAGAACAATAAA--CAC-GCGAAGCAAACAT-------T----AAAAAAAA--AAAATAAAAAAA
dp5	3:6498107-6498308 -		CATTTTCGAGGTTTAAATGCGCCTCAACTGCGACACGTTTGTGTGT-GCGTGTGTGTGTGTGTGTGTGTGTGTGTGGCCAGGCGA-CAAA------A---------------------CAAA---------CAAA------GACG--ACTCTAAATTTGTTCCCGTTTGCCGATCAACAT-TTAGAAAG-C-AACTGTAAAG---ACCCACACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAGACACAGACACGCACAC--AG---GTGT-----------------------------------------------AAA--------------------------------------------------------TTG-----GAGTATA
droPer2	scaffold_2:6717717-6717912 -		CATTTTCGAGGTTTAAATGCGCCTCAACTGCGACACGTTTGTGTGT-GCGTGTGTGTGT------GTGTGTGTGTGGCCAGGCGA-CAAA------A---------------------CAAA---------CAAA------GACG--ACTCTAAATTTGTTCCCGTTTGCCGATCAACAT-TTAGAAAG-C-AACTGTAAAG---ACCCACACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAGACACAGACACGCACAC--AG---GTGT-----------------------------------------------AAA--------------------------------------------------------TTG-----GAGTATA
droWil2	scf2_1100000004514:1324101-1324153 +		AGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAATAATACAAAA--CAGAGTGAAACGAAACG-------C----A--AAAGA--AAAGAAAGAAAG
droVir3	scaffold_12875:11799913-11799988 -		AATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCCCTTA---------------ACG-AA------ACTTA---CAGTGCACGATCGCAAAG--TCT-GACTAAACTAATA-------T----A--ATAAA--ACCAAAAAAAAA
droMoj3	scaffold_6680:2599432-2599579 -		CAA--------------------------------------------------------------------------------------A----AAA---------------------CAAA---------AAAA------AAAA--A----------------------AAACAAAAAA-ACAAAAAA-CTAAATGCAAAACAA-CATAAAAATA-----ATTATGC--------------------------------------------------------------------------------------------------------------------------AGCCAATTGTTATAA--ACGCAATGCTTTGTTTT------------------------------------------TCTTTAATATTCTTT---------------ACT-AATTGTTCATTAA---TTGTATAAAAACAAT--------------------------------------------------------
droGri2	scaffold_15110:5814001-5814049 -		A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATGTTAAA--AATAAA--TGC-GCTATGTAC---T-------T----A--AACAA--AAAAAAAGGAAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CATTTTCGAGGTTTTAATGCGCAACAACTGCGACTTGTT-GTGTGT----------------------------TGGTTAGGCGA-CAAA----AAA---------------------CAAA---------CAAA------AGTA--A----------------------CGTTGAGAAT-TTAGAAAG-CCCAATGCAAACGAA-CGCACACACA-----AGCACTTACTCCTGTCGG----------------T--GT---GAG---CTGCATTGTACTTCCGAA--------------------G-----------------------------------------------------------------ACCCAAGCCCA------------------------------------------A-CTTAATAATTTTC---------------CCC-AA------ACTCA---CAGTGTAAGAACAATAAA--CAC-GCCAAGCGCCACT-------T----G--AAAAA--GAAATAAGAAAA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................................................................................................................................................................................................................................................................AG---CTGCATTGTACTTCCGAA--------------------G-----------------------------------------------------------------ACCCA.........................................................................................................................................................................	26	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GCAACAACTGCGACTTGTT-GT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........TTTTAATGCGCAACAACTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...TTTCGAGGTTTTAATGCGCAACAACTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................CTCCTGTCGG----------------T--GT---GAG---CTGC..................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAACAATAAA--CAC-GCC............................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................ACTTACTCCTGTCGG----------------T--GG---............................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGAACAATAAA--CAC-GCC............................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................TTGTT-GTGTGT----------------------------TGGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	16	14	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

CATTTTCGAGGTTTTAATGCGCAACAACTGCGACTTGTT-CTGTGT----------------------------TGGTTAGGCGA-CAAA----AAA---------------------CAAA---------CAAA------AGTA--A----------------------CGTTGAGAAT-TTAGAAAG-CCCAATGCAAACGAA-CGCACACACA-----AGCAATTACTCCTGTCGG----------------T--GT---GAG---CTGCATTGTACTTCCGAA--------------------G-----------------------------------------------------------------ACCCAAGCCCA------------------------------------------A-CTTAATAATTTTC---------------CCC-AA------ACTCA---CAGTGTAAGAACAATAAA--CAC-GCCAAGCGCCACT-------T----G--AAAAA--GAAATAAGAAAA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...................................................................................................................................................................................T-TTAGAAAG-CCCAATGCAAACGAA-CG...................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1
...............................................................................................................................................................................AGAAT-TTAGAAAG-CCCAAT...............................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0

dm3

CATTTTCGAGGTTTTAATGCGCAACAACTGCGACTTGTT-GTGTGT----------------------------TGGTTAGACGA-CAAA----AAA---------------------CAAA---------CAAA------AGTA--A----------------------CGTTGAGAAT-TTAGAAAG-CCCAATGCAAACGAA-CGCACACACA-----AGCACTTACTCCTGTCGG----------------T--GT---GAG---CTGCATTGTACTTCCGAA--------------------G-----------------------------------------------------------------CCCCAAGACCA------------------------------------------A-TTTAATAATTTTC---------------CCC-AA------ACTCA---CAGTGTAAGAACAATAAA--CAC-GCCAAGCGCAACT-------T----G--AAAAA--GAAATAAGAAAA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......................................................................................................................AAA---------CAAA------AGTA--A----------------------CGTTGAGAA................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAATAAA--CAC-GCCAAGCGC......................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................GACTTGTT-GTGTGT----------------------------TGGTTAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAA--CAC-GCCAAGCGCAACT-------T----G--AAAAA--GA..........	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC-GCCAAGCGCAACT-------T----G--AAAAA--GAAAT.......	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................TT-GTGTGT----------------------------TGGTTAGACGA-.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...TTTCGAGGTTTTAATGCGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA--CAC-GCCAAGCGCAACT-------T----G--AA.................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................CAAA------AGTA--A----------------------CGTTGAGAA................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAACAATAAA--CAC-GCCAAGCGC......................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA--CAC-GCCAAGCGCAACT-------T----G--AAA................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................AA------AGTA--A----------------------CGTTGAGAAT-TTAGAAAG-C....................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................TGTACTTCCGAA--------------------G-----------------------------------------------------------------CCCCAAGACCA------------------------------------------A-TT.....................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CAACTGCGACTTGTT-GTGTGT----------------------------T........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................TGTT-GTGTGT----------------------------TGGTTAGACGA-.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................GT---GAG---CTGCATTGTACGGA........................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CATTTTCGAGGTTTTAATGCGCAACAACTGCGACTTGTT-GTGTGT----------------------------TGGCTAGGCGA-CAAA----AAA-----------CAAACAAAAACAAAAAAAAAACACGAA------AGTA--A----------------------TGTTGAGAAT-TTAGAAAG-CCCAATGCAAACGGA-CGCACACACA-----TTCAGTTACTTCTGTCGG----------------T--GT---GAG---CTGAATTGTATTTCCGAA--------------------G------------------------------C-------------------------------------------AA------------------------------------------A-GTTAATAAATTTT---------------A-C-AA------ACTCA---CAGTGTAAGAACAATAAA--CAC-GCCAAGCGCCATT-------T----G--AAAAA--GAAATAAGAAAA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
................................................................................................................................................................................................................................AGTTACTTCTGTCGG----------------T--GT---............................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	2	0	0
....................................................................................................................................................................................................................................ACTTCTGTCGG----------------T--GT---GAG---CTGA..................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGCCATT-------T----G--AAAAA--GA..........	19	1	1.00	1	0	0	0	0	0	1	0
CATTTTCGAGGTTTTAATGCGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................GTTACTTCTGTCGG----------------T--GT---GAG---CTGA..................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
.....TCGAGGTTTTAATGCGCAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.........................AACTGCGACTTGTT-GTGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................................GTTACTTCTGTCGG----------------T--GT---GAG---CT....................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
........................CAACTGCGACTTGTT-GTGTGT----------------------------TGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0

droYak3

CATTTTCGAGGTTTTAATGCGCAACAACTGCGACTTGTT-GTGTGT----------------------------TTGTTAGGCCA-CAGA----AAA-----------GAAACAAAAACAAA---------CAAA------ACTA--A----------------------CGTTAAGAAT-TTAGAAAG-CCCAATGCAAACGGA-CGCACACACA-----TTCGGTTACCCCTGTCGG----------------T--GT---GAG---CTGCATTGTACTTCCGAA--------------------G-----------------------------------------------------------------CCTCAAACCCA------------------------------------------A-GTTAATAATTTTT---------------C-C-GA------ACTCA---CAGTGTAAGAACAATAAA--CAC-GCCAAGCGCCAGT-------T----G--AAAAA--GAAATAAAATAA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.........................AACTGCGACTTGTT-GTGTGT----------------------------T........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAA--CAC-GCCAAGCGCCAGT-------T----G--AAAA...............	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CA-----TTCGGTTACCCCTGTCGG----------------T--GT---............................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................T----------------------------TTGTTAGGCCA-CAGA----AAA-----------GA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAA--CAC-GCCAAGCGCCAGT-------T----G--AA.................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................G----------------T--GT---GAG---CTGCATTGTACT..........................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................CGCACACACA-----TTCGGTTACCCCTGTCGG----------------T--.................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................GTACTTCCGAA--------------------G-----------------------------------------------------------------CCTCAAACCC....................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEug1

CATTTTCGAGGTTTTAATGCGCAACAACTGCGACTTGTT-GTGTGT----------------------------TGGTTAGGCGAACAAAAAAAAAA---------------------CAAA---------CAAT------AGCA--A----------------------CGTTGAGAAT-TTAGAAAG-CCCAATGTAAAC---ACGCACACAGATA---CACAGCTC--CTTATAGG----------------T--GT---GAG---CTGCATTGTGCTTCCGATTTTCTGT------------------------------------------GTTAAA-------------------------GCGAAACTTCAAGCTCA------------------------------------------ATCTTAATAATTTTC---------------TCT-AA------ACTCA---CAGTGTAAGAACAATAAT--CAC-GCCAAGCGCCAGTTAAAACAA----G--AAAGA--ATAGAAATAAAA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CATTTTCGAGGTTTTAATGCGCAACAACTGCGACTTGTT-GTGTGT----------------------------TGGATAGGCGA-CAAA----ATG-------AAAAAACACAAAAACAAA---------CAAA------AGCA--G----------------------CGTTGAGAAT-TTAGAAAG-CCCAATGTAAAC---ACGCACACTCGCACACTGCAGTTCGCTCTGTGTA----------------T--GT---GAG---CTGCATTGTGCTTCCGATTTTGTGT------------------------------------------GGCAAA-------------------------GCGAAATCTCGAGCTCA------------------------------------------ATCTCAATAATGTTTCC-------------CCCAAA------ACCCA---CAGTGTAAGAACAATAAA--CAC-GCCAAGCGCCAGT-------TTTT-G--AAAAA--AGCAAGAAAAAA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CATTTTCGAGGTTTTAATGCGCAACAACTGCGACTTGTT-GTGTGT----------------------------TGGTTAGGCGA-CAAA----AAA---------------------CAAA---------CAAA------AGCT--A----------------------CGTTGAGAAT-TTAGAAAG-CCCAATGTAAAC---ACGCACACTGAGAAAGTGCAGTTCCCTCGGTATT----------------T--GT---GAG---CTGCATTGTACTTCCGATTTTCTGT------------------------------------------GGCAAA-------------------------GCGAAATCCCTAGCTCAAAC------------------------------------TCAATCTCAATAAATTTC---------------CCCAAA------ACTCA---CAGTGTAAGAACAATAAA--CAC-GCCAAGCGCCAGT-------TTTGAAGAAAAAA--GAAAGAAAGAAA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CATTTTCGAGGTTTTAATGCGCAACAACTGCGACTTGTT-GTGTGT----------------------------TGGTTAGGCGA-CAAA----AAA---------------------CAAA---------CAAA------AGCT--G----------------------CGTTGAGAAT-TTAGAAAG-CCCAATGTAAGC---A--CACACACA-----TGCAGTT--------CGG----------------T--GT---GAG---CTGCATTGTACTGCCGATTTTCAGT------------------------------------------TACAAA-------------------------A-AAAATCTC-----CA------------------------------------------A-TTTAATAAATTTT---------------CCT-TA------ACTCA---CAGTGTAAGAACATTAAATACAC-GCCAAGCGCCAGT-------T----G--AAAAA--TATATAAAAAAG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CATTTTCGAGGTTTTAATGCGCAACAACTGCGACTTG----TGTGT----------------------------TGGTTAGGCGA-CAAAA-AAAAA---------------------CAAA---------CAAG------AGCT--G----------------------CGTTGAGAAT-TTAGAAAG-CCCAATGTAAGC---A----CACTCA-----TGCAGTTC--CCTTTCGG----------------G--CT---GAG---CTGCATTGTACTTCCGATTTTCGGT------------------------------------------GGCAAA-------------------------GCAAAATCACAAG------------------------------------------------TTTAATAATTTTT----------------CA-AA------ACTCA---CAGTGTAAGAACAATAAATTTAT-GCCAAGTGCCAGT-------T-------AAAAA--TATATAAAAAAG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CATTTTCGAGGTTTTAATGCGCAACAACTGCGACTTGTT-GTGTGTTG-----------------------GTTAGGTTAGGCGA-CAAA----AAA---------------------CAAA---------CAAA------AGCT--C----------------------CGTCGAGAAT-TTAGAAAGCCCCAATGTAAAC---A--CACATGCA-----AGCAGTTC--CCTGTTGG----------------T--GT---TAGCTGCTGCATTGTACTTGCGACTTTCTGT------------------------------------------G-TAAA-------------------------ACGAAAACTCGAGC------------------------------------------------TCAATACTTTTT---------------CCC-AA------ACTCA---CAGTGTAAGAACAATAAA--CAC-GCCAAGCGCTAGT-------T----G--AAAAA--GA---AGGAAAC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CATTTTCGAGGTTTTAATGCGCAACAACTGCGACT--------------------------------------------AGGAGA-CAAA----AAAATATATAATAAAAAAAAAAAACAAA---------CAAA------AGCT--C----------------------CGTTGAGAAT-TTAGAAAG-CCAAATGTAAAC---A------CACA-----CGCAGCT----------GTGTGAGTGTAGGTGTAGGTGTGTTGCA---TTGCGTTGTACTTCCGAA--------------------AACTAAAAAAAGAACAAACCCGGGTCGTTAGCAAA-------------------------GCAAAATCTTAAGCCG----CCAC--------------ACACGCTCGCACACAAAGTCCA-TTCAATAATTTTC---C------AAAAA-CT-AA------ACTTC---CAGTGTAAGAACAATAAA--CA-------------------------------GAAA--GCAAAAAGAAAA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CATTTTCGAGGTTTTAATGCGCAACAACTGCGACTTGTT-GTGCGTTG-----------------------GC-TGGCTGGGCGA-CAAA----AAA-----------AAAAAAAAAACAAA---------CAGAAGGCAGAGCTCGC----------------------CATCGAGAATTTTAGAAAG-CCCAATGTAAAC---A------CTCA-----TGCACCTT-------C----------------------G---CA-CAGGTGTATTGTACTTCCGT-TTTCGGTTCAGGAACTACAGAGCTACAGAAAGAACAAA--------------AAAAAAAACGCTTCAAACTGTTTG-------AAGCTTCAAGCCC----TCACACACACACACACTGACACGCGCGCGCAGA------A-AC---TAATTTTTTT-TTCCCCGAAAAA-CTAAA------ACTTA---CAGTGTAAGAACAATAAG------------CGAACAT-------T----AA-AAAAA--AGAAGAAATAAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..................................................................................................................AAAACAAA---------CAGAAGGCAGAGCT..................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................GCAGAGCTCGC----------------------CATCGAGAATTTT............................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.........................AACTGCGACTTGTT-GTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0
........................................GTGCGTTG-----------------------GC-TGGCTGGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
......................................................................................................................CAAA---------CAGAAGGCAGAGCT..................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0
............................TGCGACTTGTT-GTGCGTTG-----------------------GC-.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................CACACACACACACTGACACGCGCGCG...................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
...................................TGTT-GTGCGTTG-----------------------GC-TGGCTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................CAGGAACTACAGAGCTACAGA.......................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................CTTCAAGCCC----TCACACACACA.....................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
............................................................................................................AAAAAAAAAACAAA---------CAGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................	19	9	0.11	1	0	1	0	0	0	0
................................................................................GGCGA-CAAA----AAA-----------AAAAAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................ACGCTTCAAACTGTTTT-------C................................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0	0
........................................................................................AA----AAA-----------AAAAAAAAAACAAA---------CA..............................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0

droBip1

CATTTTCGAGGTTTTAATGCGCAACAACTGCGACTTGTT-GTGCGTTGCGT-----------------TGTGT-TGGCTGGGCGA-CAAA---AAAA---------------------CAAA---------CAGAGGGCCGAGCT--C----------------------CATCGAGAAT-TTAGAAAG-CCAAATGTAAAC---A------CACA-----TGCACCTT-----------------------------GG---CAG---GTGTATCGTACTTCCGTTTTTCGGTTC----------------------------------------G--GAA-AAAAGG-------CAGTTTG-GAAGCAGAGCTTCAAGCTCCAACTCTCACCCAC--ACACTCACACGCGCGCGCAGA------A----ACTAATTTTTCCCT------TCAAA-CT-TA------ACTCT---CAGTGTAAGAACAATAAA--CAC-GCGAAGCAAACAT-------T----AAAAAAAA--AAAATAAAAAAA	Size	Hit Count	Total Norm	Total
No Reads

dp5

CATTTTCGAGGTTTAAATGCGCCTCAACTGCGACACGTTTGTGTGT-GCGTGTGTGTGTGTGTGTGTGTGTGTGTGGCCAGGCGA-CAAA------A---------------------CAAA---------CAAA------GACG--ACTCTAAATTTGTTCCCGTTTGCCGATCAACAT-TTAGAAAG-C-AACTGTAAAG---ACCCACACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAGACACAGACACGCACAC--AG---GTGT-----------------------------------------------AAA--------------------------------------------------------TTG-----GAGTATA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........................................................................................................................................................................................................................................................................................................................................................................................................CAAAGACACAGACACGCACAC--..................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................GTGGCCAGGCGA-CAAA------A---------------------CG...........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................GTGTGTGTGTGTGTGGCCAGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................GTGTGTGTGTGTGTGTGGCCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................GTTCCCGTTTGCCGATCAAC.................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................TTGTTCCCGTTTGCCGATC....................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................CTCTAAATTTGTTCCCGTTTGCCGAT.....................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................GTGTGGCCAGGCGA-CAAA------A---------------------C............................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

CATTTTCGAGGTTTAAATGCGCCTCAACTGCGACACGTTTGTGTGT-GCGTGTGTGTGT------GTGTGTGTGTGGCCAGGCGA-CAAA------A---------------------CAAA---------CAAA------GACG--ACTCTAAATTTGTTCCCGTTTGCCGATCAACAT-TTAGAAAG-C-AACTGTAAAG---ACCCACACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAGACACAGACACGCACAC--AG---GTGT-----------------------------------------------AAA--------------------------------------------------------TTG-----GAGTATA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.........................................................................................................................................................................................AAAG-C-AACTGTAAAG---ACCC..................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................T-TTAGAAAG-C-AACTGTAAAG---ACCCACACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................CAAAGACACAGACACGCACAC--AG---.............................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.............................GCGACACGTTTGTGTGT-GCGTGTGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.........GGTTTAAATGCGCCTCAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................TGTTCCCGTTTGCCGATCAAC.................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...................................CGTTTGTGTGT-GCGTGTGTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0
................................................CGTGTGTGTGT------GTGTGTGTGTGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	13	0.08	1	0	0	0	1	0	0
.........................................TGTGT-GCGTGTGTGTGT------GTGTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1

droWil2

AGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAATAATACAAAA--CAGAGTGAAACGAAACG-------C----A--AAAGA--AAAGAAAGAAAG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATACAAAA--CAGAGTGAAACGAAACG-------C----......................	29	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAA--CAGAGTGAAACGAAACG-------C----......................	22	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAACG-------C----A--AAAGA--AAAGAAAGA...	23	1	1.00	1	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAATACAAAA--CAGAGTGAAA.........................................	22	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--CAGAGTGAAACGAAACG-------C----A--...................	21	1	1.00	1	0	0	0	1	0

droVir3

AATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCCCTTA---------------ACG-AA------ACTTA---CAGTGCACGATCGCAAAG--TCT-GACTAAACTAATA-------T----A--ATAAA--ACCAAAAAAAAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-GACTAAACTAATA-------T----A--ATAA...............	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACGATCGCAAAG--TCT-GA.............................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.ATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCCCTTA---------------ACG-AA------ACT............................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTA---CAGTGCACGATCGCAAAG--TCT-...............................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTA---CAGTGCACGATCGCAAA......................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTA---CAGTGCACGATCGCAAAG--TCT-GA.............................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CAA--------------------------------------------------------------------------------------A----AAA---------------------CAAA---------AAAA------AAAA--A----------------------AAACAAAAAA-ACAAAAAA-CTAAATGCAAAACAA-CATAAAAATA-----ATTATGC--------------------------------------------------------------------------------------------------------------------------AGCCAATTGTTATAA--ACGCAATGCTTTGTTTT------------------------------------------TCTTTAATATTCTTT---------------ACT-AATTGTTCATTAA---TTGTATAAAAACAAT--------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TAATATTCTTT---------------ACT-AATTGTTCATTAA---TT.....................................................................	29	1	1.00	1	1	0	0	0	0	0

droGri2

A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATGTTAAA--AATAAA--TGC-GCTATGTAC---T-------T----A--AACAA--AAAAAAAGGAAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_14872

2r:16007413-16007562 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-20.8	-20.7	-20.7