ID:

dsi_14859

 Coordinate:

x:4786282-4786431 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.5 -12.5 -12.4

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
HOBODNAhAT-hobo-
HOBODNAhAT-hobo-
mature
  1. 2l:12420821-12420842 +
  2. 2r:10226242-10226263 +
  3. 2r:12192146-12192167 +
  4. 2r:19900483-19900504 +
  5. 3l:5107734-5107755 +
  6. 3l:14246220-14246241 +
  7. 3l:20736299-20736320 +
  8. 3r:3335231-3335252 +
  9. 3r:4144947-4144968 +
  10. 3r:4496444-4496465 +
  11. 3r:7284021-7284042 +
  12. 3r:17499102-17499123 +
  13. 3r:17685402-17685423 +
  14. 3r:25901917-25901938 +
  15. x:2486356-2486377 +
  16. x:3375841-3375862 +
  17. dsi_14859  x:4786355-4786376 +
  18. x:5668822-5668843 +
  19. node_114264:109-130 +
  20. node_24037:1713-1734 +
star
  1. 2l:12420871-12420891 +
  2. dsi_31437  2r:7630770-7630790 +
  3. 2r:8711379-8711399 +
  4. 2r:10226291-10226311 +
  5. 2r:12192203-12192223 +
  6. 2r:19900534-19900554 +
  7. 3l:5107787-5107807 +
  8. 3l:14050424-14050444 +
  9. 3l:14246273-14246293 +
  10. 3l:20736351-20736371 +
  11. 3r:4144998-4145018 +
  12. 3r:4496486-4496506 +
  13. 3r:5230440-5230460 +
  14. 3r:17499153-17499173 +
  15. 3r:17685457-17685477 +
  16. 3r:22788570-22788590 +
  17. x:3375893-3375913 +
  18. dsi_14859  x:4786407-4786427 +
  19. node_50888:107-127 +
  20. node_15116:9-29 +
  21. 3r:7284071-7284091 +
  22. 3r:25901966-25901986 +
  23. x:4357393-4357413 +

Sense Strand Reads

AACAACCATTGTCACCACCAAAGCCGTTGGTGCCACAAAAATTGCCAAAGGTAAAAAGATCCCAAAAAGCTAGAAAAAAAAAAATACAGATCAAAACAGAGAACTGCAGCCCGCCACTCGCACTCTACGTCCACCCGATAAACACTCGGTACTCTANNNNNNNNGTGCACACAAAATTGTAGGGTGTGAGTCGAGTGGTAAAAAAGTGCCACCCTTGCAGTTCTCTGGATCAAAATCAGCAAGAATTATT
***************************************************************************************************************************((.((.(((((((.((((.......((((............))))........)))).))))).)))).))..****************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR902009
testis
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 M053
female body
 GSM343915
embryo
 M023
head
...........................................................................................................................TCTACGTCCACCCGATAAACAC......................................................................................................... 22 0 20 42.80 856 856 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TCTACGTCCACCCGATAAACACTCG...................................................................................................... 25 0 20 10.50 210 106 91 0 13 0 0 0 0 0 0 0 0 0
...........................................................................................................................TCTACGTCCACCCGATAAACACTCGGTA................................................................................................... 28 0 20 9.25 185 0 157 3 0 2 0 0 0 20 3 0 0 0
........................................................................................................................................................................................TGTGAGTCGAGTGGTAAA................................................ 18 0 20 8.90 178 178 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TGTGAGTCGAGTGGTAAAAAA............................................. 21 0 20 8.70 174 174 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TCTACGTCCACCCGATAAACACTCGGT.................................................................................................... 27 0 20 6.75 135 0 131 1 0 1 0 0 0 0 0 2 0 0
...............................................................................................................CGCCACTCGCACTCTACGTCCACCCG................................................................................................................. 26 0 20 4.60 92 46 0 0 0 0 0 0 46 0 0 0 0 0
..........................................................................................................................................................................................TGAGTCGAGTGGTAAAAAAGTGCC........................................ 24 0 20 4.05 81 0 1 79 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................TGAGTCGAGTGGTAAAAAAGTGCCA....................................... 25 0 20 3.55 71 0 1 70 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................TCGCACTCTACGTCCACCC.................................................................................................................. 19 0 20 2.30 46 46 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TGTGAGTCGAGTGGTAAAAAAGTGCC........................................ 26 0 20 2.30 46 0 0 0 13 28 0 0 0 5 0 0 0 0
.....................................................................................................AACTGCAGCCCGCCACTCGCACTC............................................................................................................................. 24 0 20 2.30 46 46 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TCTACGTCCACCCGATAAACACTCGG..................................................................................................... 26 0 20 2.20 44 0 0 0 0 2 42 0 0 0 0 0 0 0
..........................................................................................................................................................................................TGAGTCGAGTGGTAAAAAAGTGC......................................... 23 0 20 1.85 37 0 1 32 3 0 0 1 0 0 0 0 0 0
..........................................................................................................................CTCTACGTCCACCCGATAAACACTCGGTA................................................................................................... 29 0 20 1.25 25 0 4 19 0 2 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TGTGAGTCGAGTGGTAAAAAAGTGC......................................... 25 0 20 1.25 25 0 1 0 19 0 0 0 0 0 2 0 3 0
.................................................................................................................................................................................................................CACCCTTGCAGTTCTCTGGATCAAAATC............. 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
....AACATTGTCACCACCAACGCCGG............................................................................................................................................................................................................................... 23 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TGTGAGTCGAGTGGTAAAAAAGTG.......................................... 24 0 20 0.75 15 0 0 0 10 4 0 0 0 1 0 0 0 0
...........................................................................................................................TCTACGTCCACCCGATAAACACTCGGTACT................................................................................................. 30 0 20 0.75 15 0 15 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................ATTGTAGGGTGTGAGTCGAGT...................................................... 21 0 20 0.60 12 0 0 1 0 0 0 11 0 0 0 0 0 0
...........................................................................................................................TCTACGTCCACCCGATAAACACTC....................................................................................................... 24 0 20 0.55 11 0 5 0 0 0 5 0 0 0 0 1 0 0
..........................................................................................................................CTCTACGTCCACCCGATAAACACTCGGT.................................................................................................... 28 0 20 0.45 9 0 0 8 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................TAGGGTGTGAGTCGAGTGGTAAAAAAG............................................ 27 0 20 0.40 8 0 1 7 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................AAAATTGTAGGGTGTGAGTCGAGT...................................................... 24 0 20 0.35 7 0 0 4 0 2 0 0 0 0 1 0 0 0
...............................................................................................................CGCCACTCGCACTCTACGTCCACCCGA................................................................................................................ 27 0 20 0.30 6 0 0 3 0 0 0 0 0 3 0 0 0 0
.............................................................................................................................................................................................GTCGAGTGGTAAAAAAGTGCCACCCT................................... 26 0 20 0.30 6 0 0 0 5 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TGAGTCGAGTGGTAAAAAAGTGCCACCC.................................... 28 0 20 0.30 6 0 0 6 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TGTGAGTCGAGTGGTAAAAAAGT........................................... 23 0 20 0.30 6 0 0 0 3 3 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TGTGAGTCGAGTGGTA.................................................. 16 0 20 0.25 5 0 0 0 5 0 0 0 0 0 0 0 0 0
..........................................................................................................................CTCTACGTCCACCCGATAAACACTCGG..................................................................................................... 27 0 20 0.25 5 0 0 0 0 5 0 0 0 0 0 0 0 0
..................................................................................................................................................................................GTAGGGTGTGAGTCGAGTGG.................................................... 20 0 20 0.25 5 0 0 0 0 0 0 4 0 1 0 0 0 0
...........................................................................................................................TCTACGTCCACCCGATAAACACTCGGTACTC................................................................................................ 31 0 20 0.20 4 0 4 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TTGTAGGGTGTGAGTCGAGTGGTA.................................................. 24 0 20 0.20 4 0 0 0 2 0 0 0 0 0 2 0 0 0
.........................................................................................................................................................................CACAAAATTGTAGGGTGTGAGTCGAG....................................................... 26 0 20 0.20 4 0 0 0 0 2 0 0 0 0 2 0 0 0
..........................................................................................................................................................................ACAAAATTGTAGGGTGTGAGTCGAG....................................................... 25 0 20 0.20 4 0 1 0 0 3 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TGTGAGTCGAGTGGTAAAAAAGTGCCA....................................... 27 0 20 0.20 4 0 0 0 4 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................AAAATTGTAGGGTGTGAGTCGAGTGG.................................................... 26 0 20 0.20 4 0 0 0 0 4 0 0 0 0 0 0 0 0
................................................................................................................................................................................TTGTAGGGTGTGAGTCGAGTGGTAA................................................. 25 0 20 0.20 4 0 0 2 0 0 0 0 0 0 2 0 0 0
................................................................................................................................................................................TTGTAGGGTGTGAGTCGAGTGGTAAA................................................ 26 0 20 0.20 4 0 0 1 1 2 0 0 0 0 0 0 0 0
.................................................................................................AGAGAACTGCAGCCCGCCACT.................................................................................................................................... 21 0 20 0.15 3 0 0 0 0 0 0 3 0 0 0 0 0 0
............................................................................................................................CTACGTCCACCCGATAAACACTCGG..................................................................................................... 25 0 20 0.15 3 0 0 0 0 0 0 0 0 0 0 3 0 0
...................................................................................................................................................................................................TGGTAAAAAAGTGCCACCCTTGCAGT............................. 26 0 20 0.15 3 0 1 0 2 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TGTAGGGTGTGAGTCGAGTGG.................................................... 21 0 20 0.15 3 0 0 0 0 1 0 1 0 1 0 0 0 0
.......................................................................................................................GCACTCTACGTCCACCCGATAAACAC......................................................................................................... 26 0 20 0.15 3 0 0 3 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CACAAAATTGTAGGGTGTGAG............................................................ 21 0 20 0.15 3 0 1 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................TTGTAGGGTGTGAGTCGAG....................................................... 19 0 20 0.15 3 0 0 0 0 0 0 1 0 2 0 0 0 0
.............ACAACCAAAGGCGTTGGT........................................................................................................................................................................................................................... 18 2 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................CACTCGCACTCTACGTCCACCCGA................................................................................................................ 24 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................CAAAATTGTAGGGTGTGAGTC.......................................................... 21 0 20 0.10 2 0 1 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................CACTCGCACTCTACGTCCACCCGATAAA............................................................................................................ 28 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TGTAGGGTGTGGGTCGAGTGG.................................................... 21 1 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0 0 0
.............................................................................................................................................................................AAATTGTAGGGTGTGAGTCGAGTGGT................................................... 26 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................ACAAAATTGTAGGGTGTGAG............................................................ 20 0 20 0.10 2 0 0 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................TCTACGTCCATCCGATAAACACTCGGTA................................................................................................... 28 1 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................GCACTCTACGTCCACCCGATAAACACT........................................................................................................ 27 0 20 0.10 2 0 0 1 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................GAGTCGAGTGGTAAAAAAGTGC......................................... 22 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TTGTAGGGTGTGAGTCGAGA...................................................... 20 1 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0 0
............................................................................................................................................................................AAAATTGTAGGGTGTGAGTCGAG....................................................... 23 0 20 0.10 2 0 0 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CACAAAATTGTAGGGTGTGAGTCGA........................................................ 25 0 20 0.10 2 0 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TAAAAAAGTGCCACCCTTGCAGTTCTC......................... 27 0 20 0.10 2 0 1 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................TAGGGTGTGAGTCGAGTG..................................................... 18 0 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0 0 0
.............................................................................................................................................................................AAATTGTAGGGTGTGAGTCGA........................................................ 21 0 20 0.10 2 0 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................GAGTCGAGTGGTAAAAAAGTGCCACCCT................................... 28 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................CAAAATTGTAGGGTGTGAGTCGAGTGG.................................................... 27 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TTGTAGGGTGTGAGTCGAGTGGTAAAA............................................... 27 0 20 0.10 2 0 0 0 0 0 0 0 0 0 2 0 0 0
..........................................................................................................................................................................................TGAGTCGAGTGGTAAAAAAGTGCA........................................ 24 1 20 0.10 2 0 0 0 0 0 0 0 0 0 2 0 0 0
....................................................................................................................................................................................AGGGTGTGAGTCGAGTGGTAA................................................. 21 0 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0 0 0
................................................................................................................................................................................TTGTAGGGTGTGAGTCGAGTGGTAAAAA.............................................. 28 0 20 0.10 2 0 0 0 0 0 0 0 0 0 2 0 0 0
...................................................................................................................................................................................TAGGGTGTGAGTCGAGTGG.................................................... 19 0 20 0.10 2 0 0 0 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................AAATTGTAGGGTGTGAGTCGAGT...................................................... 23 0 20 0.10 2 0 0 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................AAATTGTAGGGTGTGAGTCGAGTGGTAAA................................................ 29 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GGGTGTGAGTCGAGTGGTTT................................................. 20 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................TGAGTCGAGTGGTAAAAAAGTGCCACCA.................................... 28 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................TGCAGCCCGCCACTCGCACTCTACGTC....................................................................................................................... 27 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................CACTCGCACTCTACGTCCACCT.................................................................................................................. 22 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................................................GGGTGTGAGTCGAGTGGTAAAAAAGT........................................... 26 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................TCTACGTCCACCCGATAAACACTCGGTACTCTA.............................................................................................. 33 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................AGGGTGTGAGTCGAGTGGT................................................... 19 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................CGCACTCTACGTCCACCCGATAAACACT........................................................................................................ 28 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0
................................................................................................CAGAGTACTGCAGCCCGCC....................................................................................................................................... 19 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................TCTACGTCCACCCGATA.............................................................................................................. 17 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................TGAGTCGAGGGGTAAAAAAGTGCCA....................................... 25 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................GTCGAGTGGTAAAAAAGTGCCACCCA................................... 26 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................GTGAGTCGAGTGGTAAAAAATTGCC........................................ 25 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................TGGTAAAAAAGTGCCACCCTTGCAGA............................. 26 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TGTAGGGTGTGAGTCGAGTGGTA.................................................. 23 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................CACTCGCACTCTACGTCCACCCGATA.............................................................................................................. 26 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................ATTGTAGGGTGTGAGTCGAG....................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................GAGAACTGCAGCCCGCCATTCGCACTC............................................................................................................................. 27 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CACAAAATTGTAGGGTGTGAGTCGATA...................................................... 27 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................AAAAAAAAAATTACAGAGCA............................................................................................................................................................. 20 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................ACACAAAATTGTAGGG.................................................................. 16 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TGTGAGTCGAGTAGT................................................... 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TATGAGTCGAGTGGTAAAAAAGTGCC........................................ 26 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................GTGAGTCGAGTGGTAAAAAAG............................................ 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................ATTGTAGGGTGTGAGTCGTTT...................................................... 21 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................TAGGGTGTGAGTCGAGTGGTAAAA............................................... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................TAGGGTGTGAGTCGA........................................................ 15 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................AAATTGTAGGGTGTGAGTCGATTGGTAAA................................................ 29 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................TGCAGCCCGCCACTCGCACTCTACGTA....................................................................................................................... 27 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................AGAGAACTGCAGCCCGCCACTCGC................................................................................................................................. 24 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TGTGAGTCGAGTGGTAAAAAAATGCCA....................................... 27 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................CGAGTGGTAAAAAAGTGC......................................... 18 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TGTGAGTCGAGTGGTAAAAAAGTGCCACCCT................................... 31 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................GTGAGTCGAGTGGTA.................................................. 15 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................AAGTGCCACCCTTGCAGTTCTCTGG...................... 25 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................GTCGAGTGGTAAAAAAGTGCCACCCTT.................................. 27 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CACGAAATTGTAGGGTGTGA............................................................. 20 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................CTCTACGTCCACCCGATAAACACTCGGTACTC................................................................................................ 32 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................CTACGTCCACCCGATAAACACTCGGT.................................................................................................... 26 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................TCGCACTCTACGTCCACCCGATAAACA.......................................................................................................... 27 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................CACAAAATTGTAGGGTGTGA............................................................. 20 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TGAGTCGAGTGGTGGAAAAGT........................................... 21 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................TGAGTCGAGTGGTAAAAAAGGGCC........................................ 24 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TGAGTCGAGTGGTAAGAAAGTGCCAC...................................... 26 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................CTCGGTCTACGTCCACCCGA................................................................................................................ 20 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................TCTACGTCCACCCGATAAACACTCGGTAC.................................................................................................. 29 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................CCACTCGCACTCTACGTCCACCCGA................................................................................................................ 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................CCCGATAAACACTCGGTA................................................................................................... 18 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TCTACGTCCACCCGATAAACACTCGGCAC.................................................................................................. 29 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................CACACAAAATTGTAGGGTGTGAG............................................................ 23 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TGTGAGTCGAGTGGTAAAAATGTG.......................................... 24 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................TGGTAAAAAAGTGCCACCCTTGCA............................... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................GTAGGGTGTGGGTCGAGTGGTG.................................................. 22 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................AGTCGAGTGGTAAAAAAGTG.......................................... 20 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................AAATTGTAGGGTGTGAGT........................................................... 18 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................TACGTCCACCCGATAAACACTCGGT.................................................................................................... 25 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................AATTGTAGGGTGTGAGTCGAG....................................................... 21 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................ACACAAAATTGTAGGGTGTGA............................................................. 21 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TGTAGGGTGTGAGTCGAGTGGTAAA................................................ 25 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................TGTAGGGTGTGAGTCGAGTGGTAAAA............................................... 26 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................TACGTCCACCCGATAAACACTCGTTACTC................................................................................................ 29 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................TCTACGTCCACCCGATAAACACTTGGT.................................................................................................... 27 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TGGTAAAAAAGTGCCACCCTTG................................. 22 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TGTGAGTCGAGTGGTAAAAAAGTGCCACCC.................................... 30 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TTGTAGGGTGTGAGTCGA........................................................ 18 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TTTGAGTCGAGTGGTAAAAAAGTGCC........................................ 26 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................CACAAAATTGTAGGGTGTGAGTCGAGTGG.................................................... 29 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AAAAGTGCCACCCTTGCAGTTCTCTGG...................... 27 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CACGGGATTGTAGGGTGTGA............................................................. 20 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................CAAAATTGTAGGGTGTGAATTT......................................................... 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1
........................................................................................................................................................................ACACAAAATTGTAGGGTGTG.............................................................. 20 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................AGGGTGTGAGTCGAGTGGTAAAAA.............................................. 24 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TGTGAGTCGAGTGGTAAAAAAGTGCT........................................ 26 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................AGAGAACTGCAGCCCGCCACTCGCAAA.............................................................................................................................. 27 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................ATTGTAGGGTGTGAGTCGATTT..................................................... 22 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................AGAGAACTGCAGCCCGCCAC..................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................GGTGTGAGTCGAGTGGTAAAAAA............................................. 23 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................CAAAATTGTAGGGTGTGAG............................................................ 19 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................TCTACGTCCACCCGATAAACACTCGTAA................................................................................................... 28 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................TCTACGTCCACCCGATAAACACTCGGAAAA................................................................................................. 30 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TAGGGTGTGAGTCGAGTTT.................................................... 19 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................AGGGTGTGAGTCGAGTGG.................................................... 18 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TGTGAGTCGAGTGTTAAAAAAGTGC......................................... 25 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................ACAAAATTGTAGGGTGTGAGTCGA........................................................ 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................TGAGTCGAGTTGTGAAAAA............................................. 19 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TAGGGTGTGAGTCGAGTGGTAAAAAA............................................. 26 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TGAGTCGAGTGGTAAAAAAGTGCCACA..................................... 27 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TGTGAGTCGAGTGGTAAAAAAGTGCCAC...................................... 28 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................CGATAAACACTCGGTACTCT............................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1
...........................................................................................................................TCTACGTCCACCCGATAAAC........................................................................................................... 20 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................TCTACGTCCACCCGATAAACACTCGGTGCCA................................................................................................ 31 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................TACGTCCACCCGATAAACACTCGGTAC.................................................................................................. 27 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................GGTGCCACCCTTGCAGTTCT.......................... 20 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................AGGGTGTGAGTCGAGTGGTAAAAAAG............................................ 26 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................ACACAAAATTGTAGGGTGTGAGTCGAG....................................................... 27 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................ACTCTACGTCCACCCGATA.............................................................................................................. 19 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TGAGTCGAGTGGTAAAAAAGT........................................... 21 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................GATGAACACTCGGTACTCTT.............................................................................................. 20 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................CAAGATTGTAGGGTGTGTTT........................................................... 20 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................GTAGGGTGTGAGTCGA........................................................ 16 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TCTACGTCCACTCGATAAACACT........................................................................................................ 23 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TTGTTGGTAACAGTGGTGGTTTCGGCAACCACGGTGTTTTTAACGGTTTCCATTTTTCTAGGGTTTTTCGATCTTTTTTTTTTTATGTCTAGTTTTGTCTCTTGACGTCGGGCGGTGAGCGTGAGATGCAGGTGGGCTATTTGTGAGCCATGAGATNNNNNNNNCACGTGTGTTTTAACATCCCACACTCAGCTCACCATTTTTTCACGGTGGGAACGTCAAGAGACCTAGTTTTAGTCGTTCTTAATAA
******************************************************((.((.(((((((.((((.......((((............))))........)))).))))).)))).))..*************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
 M053
female body
 M024
male body
...............................................................................................................GCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 22 0 20 10.10 202 0 82 120 0 0 0 0 0 0 0 0
.............................................................................................................GGGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 24 0 20 4.60 92 0 0 0 56 0 21 0 15 0 0 0
..................................................................................................................GTGAGCGTGAGATGCAGGT..................................................................................................................... 19 0 20 4.60 92 0 0 0 0 92 0 0 0 0 0 0
................................................................................................................CGGTGAGCGTGAGATGCAGGT..................................................................................................................... 21 0 20 2.40 48 48 0 0 0 0 0 0 0 0 0 0
.....................................................................................TGTCTAGTTTTGTCTCTTGACGTCGGGC......................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................CCTAGGTTTAGTCGTTCGT..... 19 2 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 23 1 20 0.95 19 0 0 0 0 0 12 7 0 0 0 0
............................................................................................................TATGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 25 3 20 0.90 18 18 0 0 0 0 0 0 0 0 0 0
............................................................................................................TAGGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 25 2 20 0.80 16 16 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TTGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 24 2 20 0.80 16 0 16 0 0 0 0 0 0 0 0 0
..............................................................................................................CGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 23 1 20 0.65 13 0 12 0 0 0 0 1 0 0 0 0
.................................................................................................................GGTGAGCGTGAGATGCAGGT..................................................................................................................... 20 0 20 0.60 12 12 0 0 0 0 0 0 0 0 0 0
.............................................................................................................ATGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 24 2 20 0.60 12 12 0 0 0 0 0 0 0 0 0 0
..........................................................................................................GTCGGGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 27 0 20 0.60 12 0 12 0 0 0 0 0 0 0 0 0
.............................................................................................................................ATGCAGGTGGGCTATTTGTGAGCCAT................................................................................................... 26 0 20 0.50 10 0 0 0 6 0 0 0 4 0 0 0
...............................................................................................................................................................................................................................ATACCTAGGTTTAGTCGTTCT...... 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TCGGGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 26 0 20 0.50 10 0 10 0 0 0 0 0 0 0 0 0
............................................................................................................AATGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 25 3 20 0.45 9 9 0 0 0 0 0 0 0 0 0 0
............................................................................................................TTTGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 25 3 20 0.45 9 9 0 0 0 0 0 0 0 0 0 0
..........................................................................TTTATTTTTGATGTCTAGGTTTGT........................................................................................................................................................ 24 3 5 0.40 2 0 0 0 1 0 0 0 1 0 0 0
.....................................................................................................................................................................................CCCACACTCAGCTCACCATTTTTTC............................................ 25 0 20 0.35 7 0 0 0 0 0 7 0 0 0 0 0
...............................................................................................................GCGGTGAGCGTGAGATGCAGGTG.................................................................................................................... 23 0 20 0.35 7 0 0 7 0 0 0 0 0 0 0 0
................................................................................................................TGGTGAGCGTGAGATGCAGGT..................................................................................................................... 21 1 20 0.35 7 7 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TTTGGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 26 2 20 0.30 6 1 5 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TCCCACACTCAGCTCACCATTTTTT............................................. 25 0 20 0.30 6 0 0 6 0 0 0 0 0 0 0 0
............................................................................................................ATGGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 25 2 20 0.30 6 0 6 0 0 0 0 0 0 0 0 0
............................................................................................................AAGGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 25 2 20 0.30 6 2 4 0 0 0 0 0 0 0 0 0
...........................................................................................................ATTGGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 26 3 20 0.30 6 3 3 0 0 0 0 0 0 0 0 0
.....................................................................................................................AGCGTGAGATGCAGGTGGGCTATTTGT.......................................................................................................... 27 0 20 0.30 6 0 0 0 6 0 0 0 0 0 0 0
.............................................................................................................................................................................................................CACGGTGGGAACGTCAAGAGA........................ 21 0 20 0.25 5 5 0 0 0 0 0 0 0 0 0 0
..........................................................................TTTTTTTTTGATGTCTAGGTTTGTCT...................................................................................................................................................... 26 2 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0
...............................................................................TTTTTATGTCTAGGTTTGTCT...................................................................................................................................................... 21 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................TAAGGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 26 2 20 0.25 5 0 5 0 0 0 0 0 0 0 0 0
...................................................................................................................TGAGCGTGAGATGCAGGT..................................................................................................................... 18 0 20 0.25 5 0 0 0 0 0 1 4 0 0 0 0
..........................................................................TTTATTTTTGATGTCTAGGTTTGTCT...................................................................................................................................................... 26 3 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0
........................................................................CTTTTTATTTTGATGTCTAGGTTTGT........................................................................................................................................................ 26 3 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................CTGGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 25 1 20 0.25 5 0 4 0 0 0 0 1 0 0 0 0
............................................................................................................ATAGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 25 3 20 0.20 4 1 3 0 0 0 0 0 0 0 0 0
...........................................................................................................TATTGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 26 3 20 0.20 4 4 0 0 0 0 0 0 0 0 0 0
...............................................................................................TGTCTCTTGACGTCGGGCGGTGAGCGT................................................................................................................................ 27 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................TTCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 23 2 20 0.20 4 2 2 0 0 0 0 0 0 0 0 0
.................................................................................................................GGTGAGCGTGAGATGCAGGTG.................................................................................................................... 21 0 20 0.20 4 1 1 2 0 0 0 0 0 0 0 0
.............................................................................................................TCGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 24 2 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TTTAGGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 27 3 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GGCGGTGAGCGTGAGATGCAG....................................................................................................................... 21 0 20 0.15 3 0 3 0 0 0 0 0 0 0 0 0
...............................................................................................................TAGGTGAGCGTGAGATGCAGGT..................................................................................................................... 22 2 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................GGGCTATTTGTGAGCCATGAGA............................................................................................... 22 0 20 0.15 3 0 0 0 0 0 3 0 0 0 0 0
.................................................................................................................................................................................ACATCCCACACTCAGCTCACCATT................................................. 24 0 20 0.15 3 0 0 0 3 0 0 0 0 0 0 0
.............................................................................................................TTTCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 24 3 20 0.15 3 0 3 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................ACATCCCACACTCAGCTCACCATTTTTT............................................. 28 0 20 0.15 3 0 0 3 0 0 0 0 0 0 0 0
...........................................................................................................TATGGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 26 2 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
................................................................................................................CGGTGAGCGGGAGATGCAGGT..................................................................................................................... 21 1 20 0.10 2 0 1 1 0 0 0 0 0 0 0 0
....................................................................................................................GAGCGTGAGATGCAGGTGGGCTATTT............................................................................................................ 26 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0
...........................................................................................................................................................................GTTTTAACATCCCACACTCAGCTCA...................................................... 25 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0
.............................................................................TTTTTTTATGTCTAAGTTTGTGT...................................................................................................................................................... 23 3 10 0.10 1 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................GGCGGTGAGCGTGAGATGCAGGTGGGCT................................................................................................................ 28 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
...............................................................................................................AAGGTGAGCGTGAGATGCAGGT..................................................................................................................... 22 2 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TGTCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 24 2 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................AACATCCCACACTCAGCTCACCATTTTTT............................................. 29 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0
.............................................................................................................AGGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 24 1 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0
..............................................................................................................ATCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 23 2 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
............................................................................................................CGGGCGGTGAGCGTGAGATGTAGGT..................................................................................................................... 25 1 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0
............................................................................................................CCTGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 25 2 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
...........................................................................................................CATGGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 26 3 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
...............................................................................................................ACGGTGAGCGTGAGATGCAGGTGGGCT................................................................................................................ 27 1 20 0.10 2 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TTTTTCACGGTGGGAACGTCAA............................ 22 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TCCCACACTCAGCTCACCATTTTTTC............................................ 26 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................................CATCCCACACTCAGCTCACCATT................................................. 23 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0
........................................................................................................ATTTCGGGCGGTGAGCGTGAGA............................................................................................................................ 22 2 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
......................................................................................................................GCGTGAGATGCAGGTGGGCTATTTGT.......................................................................................................... 26 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0
............................................................................................................CAGGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 25 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................AGGTGGGCTATTTGTGAGCCATGAGAT.............................................................................................. 27 0 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0
..............................................................................................................................TGCAGGTGGGCTATTTGTGAGCCAT................................................................................................... 25 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................AAGAGCGTGAGATGCAGGTGGGCTATTTGT.......................................................................................................... 30 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................TCCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 23 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................GACGGTGAGCGTGAGATGCAGGT..................................................................................................................... 23 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................TCTGGTGAGCGTGAGATGCAGGT..................................................................................................................... 23 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................TTGCGGTGAGCGTGAGATGCGGGT..................................................................................................................... 24 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................ACGTGAGATGCAGGTGGGCTATTTGT.......................................................................................................... 26 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................ACGGTGAGCGTGAGATGCAGGTGGG.................................................................................................................. 25 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................CCGACACTCAGCTCACCATTTTTT............................................. 24 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................ATCCCACACTCAGCTCACCAT.................................................. 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................................TTAACATCCCACACTCAGCTCA...................................................... 22 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................CCCGCACTCAGCTCACCATTTTTT............................................. 24 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................CGGGCGGTGAGCGTGAGATGCAGTT..................................................................................................................... 25 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................GCGGTGAGCGTGAGATGCAGG...................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CCCCAACAGACCTAGTTTT............... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................AGCGTGAGATGCAGGT..................................................................................................................... 16 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................TCCCACACTCAGCTCACCATT................................................. 21 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................CGGGGAGCGTGAGATGCAGGT..................................................................................................................... 21 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................TGCGGTGAGCGTGAGATGCAGGTG.................................................................................................................... 24 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................CGGGCGGTGAGCGTGGGATGCAGGT..................................................................................................................... 25 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................CCTGGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 26 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................CGGGGGGTGAGCGTGAGATGCAGGT..................................................................................................................... 25 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................GATGCAGGTGGGCTATTTGTGAGCCA.................................................................................................... 26 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................TTAGCGTGAGATGCAGGTGGGCTATT............................................................................................................. 26 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................AGGGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 25 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................TATGGTGAGCGTGAGATGCAGGT..................................................................................................................... 23 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................CTTGGTGAGCGTGAGATGCAGGT..................................................................................................................... 23 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................TGTGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 25 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TGTTGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 26 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................TTCGGGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................ATGCGGTGAGCGAGAGATGCAGGT..................................................................................................................... 24 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TAACATCCCACACTCAGCTCACCATG................................................. 26 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................TGGCGGTGAGCGTGAGATGCAGGTG.................................................................................................................... 25 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................CGGGAGGTGAGCGTGAGATGCAGGT..................................................................................................................... 25 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................AGATGCAGGTGGGCTATTT............................................................................................................ 19 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................GACGTCAGGCGGTGAGCGTGA.............................................................................................................................. 21 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................AGACGTCGGGCGGTGAGCGT................................................................................................................................ 20 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................TTCGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 25 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................GGGCGGTGAGCGGGAGATGCAGGT..................................................................................................................... 24 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................CGCGGGGAGCGTGAGATGCAGGT..................................................................................................................... 23 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................AGGCGGTGAGCGTGAGATGCAGT...................................................................................................................... 23 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................TGGGCTATTTGTGAGCCATGAGCT.............................................................................................. 24 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................AGTGAGCGTGAGATGCAGGT..................................................................................................................... 20 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................ATTTGTGAGCCATGAGAT.............................................................................................. 18 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................AAGGTGAGCGTGAGATGCAGGTGGGCT................................................................................................................ 27 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................AGCGTGAGATGCAGGTGGGC................................................................................................................. 20 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................TTCGGGCGGTGAGCGTGAGATGC......................................................................................................................... 23 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................CAGGTGGGCTATTTGTGAGCCATGAGAT.............................................................................................. 28 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................GAGATGCAGGTGGGCTATTT............................................................................................................ 20 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................GCGAGCGTGGGATGCA........................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................GGCGGAGAGCGTGAGATGCAGGT..................................................................................................................... 23 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TTTTCACGGTGGGAACGTCAAGAGAC....................... 26 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................GAGCGTGAGATGCAGGTGGGC................................................................................................................. 21 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TTATCCCACACTCAGCTCACCATTTTTT............................................. 28 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................CCCACACTCAGCTCACCATTTTTTCA........................................... 26 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................................................................................TTTTTCACGGTGGGAAAGTCAAG........................... 23 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................GGGCTATTTGTGAGCCATG.................................................................................................. 19 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................CCGCGGTGAGCGTGAGATGCAGG...................................................................................................................... 23 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................TGTTTTAACATCCCACACTCAGCT........................................................ 24 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................GTGTTTTAACATCCCACACTCAGCT........................................................ 25 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................AGGGGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 26 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................CCGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 24 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................GGTGAGCGTGCGATGCAGGT..................................................................................................................... 20 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................GGTGGGCTATTTGTGAGCCATGAGAT.............................................................................................. 26 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................TGAGCGTGAGATGCAGGTGGGCTATTT............................................................................................................ 27 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................ACGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 24 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TTTTAACATCCCACACTCAGCTCA...................................................... 24 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................GGCGGTGAGCGTGAGATGCAGG...................................................................................................................... 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
..............................................................................................................AGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 23 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................CGGGCGGAGAGCGTTAGATGCAGGT..................................................................................................................... 25 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................GACGTCGGGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 30 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................ACTGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 25 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................CAGCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 24 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................GAGCGTGAGATGCAGGTGGGCTATTTGT.......................................................................................................... 28 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................GCGGTGAGCGGGAGATGCAGGT..................................................................................................................... 22 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................GGTCGGTGAGCGTGAGATGCAGGT..................................................................................................................... 24 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................TCCCACACTCAGCTCACCA................................................... 19 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................TGAGCGTGAGATGCAGGTGGGCT................................................................................................................ 23 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................TACGGTGAGCGTGAGATGCAGCT..................................................................................................................... 23 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................GTGTTTTAACATCCCACACTCAGC......................................................... 24 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................AACACTCAGCTCACCATTTTTTCACGGT....................................... 28 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................TTGGTGAGCGTGAGATGCAGGT..................................................................................................................... 22 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................CCCACACTCAGCCCACCATTTTTTC............................................ 25 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:4786232-4786481 + dsi_14859 AAC-----------------------------------------------------------------------------------AACCATTGTCACCACCAAAGCCGTTGGTGCCACAAAAATTGCCAAAGGTAAAA-----------------AGATCCCAAAAAG---------------------------------CTAG----------------------------------------------AAAAAAAAAAATACAGATCAAAACAG-------------AGAACTGCAGCCCGCCACTCGCACTCTACGTCCACCCGATAAACACTCGGTACTCTANNNNNNNNGTGCACACAAAATTGTAGGGTGTGAGTCGAGTGGTAAAAAAGTGCCACCCTTGCAG-TTC-T--CTGGATCAAAATCAGCAAGA-ATTATT
droSec2 scaffold_4:1619133-1619225 - AAC-----------------------------------------------------------------------------------AACCATTGTCACCACCAAAGCCGTTGGTGCCACAAAAATTGCCAAAGGTAAAA-----------------AGATCCCAAAAAG---------------------------------CTAG----------------------------------------------AAAAAA---AATACAGA------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAAA----------------
dm3 chrX:5137976-5138144 + AAC----------------AACAACACTAAGACTACAACATCAAACGCTCCAACAG---------CAACAATTAAAATTCAGCAACAACCATTGTCACCACCAAAGCCGTTGGTGCCACAAAAATTGCCAAAGGTAAAA-----------------AGATCCCAAAAA--------------------------------CGCTAG----------------------------------------------AAAACAAA-AATACA------------------------------------------------------------------------------------------------------------------------------------------------------------GATCAAAATCAGCAACA-ATTATT
droEre2 scaffold_4690:2492902-2493057 + CAC------------------------AAAGACTACAACATCAAACGCTCCAACAG---------CAACAATTAAAATTCAGCAACAACCATTGTCACCACCAAAGCCGTTGGTGCCACAAAAATTGCCAAAGGTAAAA-----------------AGATCCCAAAACG---------------------------------CTAG----------------------------------------------AGCAA-----ATACA------------------------------------------------------------------------------------------------------------------------------------------------------------GATTAAAATCTGCAACA-ATTATT
droYak3 X:3327787-3327967 - AACAACCCATATTACCAACAACAACACTAAGACTACAACATCAAACGCTCCAACAG---------CTACAATTAAAATTCAGCAACAACCATTGTCACCACCAAAGCCGTTGGTGCCACAAAAATTGTCAAAGGTAAAA-----------------AGATCCCAAAAAG---------------------------------CTAG----------------------------------------------AAAAAAAA----ACA------------------------------------------------------------------------------------------------------------------------------------------------------------GATCAAAATCAGCAACA-ATTATT
droEug1 scf7180000409182:47463-47607 + AAC-----------------------------------------------------------------------------------AACCATTGTCACCACCAAAGCCGTTGGTGCCACAAAAATTGCCAAAGGTAAAA-----------------AC----CAAAAAA------AAAAGAGAAATTCCACA----AAAATTCTAAAAAAAAA-ACCAA---------------------------------AAAAAC---ATTGCCAAT------------------------------------------------------------------------------------------------------------------------------------------------------CAAGAACAAAATCAGCAACA-ATTATT
droBia1 scf7180000301345:397898-398024 - AAC-----------------------------------------------------------------------------------AACCATTGTCACCGCCAAAGCCGTTGGTGCCACAAAAATTGCCCAAGGTAAAA----------------CAAATCCCGAAAAGTAACAA---------------AAAT----------TA----------------------------------------------A-----------GTAAA----TA---AAAAATAATAT-----------------------------------------------------------------------------------------------------------------------------------CAAGAACCAAATCAGCAACA-AATATT
droTak1 scf7180000414531:16839-16934 - AAC-----------------------------------------------------------------------------------AACCATTGTCACCACCAAAGCCGTTGGTGCCACAAAAATTGCCAAAGGTAAAA-----------------ATATCCCATAAAG---------------------------------CGAA----------------------------------------------AGCAAA---AACAA-------------------------------------------------------------------------------------------------------------------------------------------------------------AAACCCAATCAG------------
droEle1 scf7180000491272:309357-309518 - C-----------------------------TACAACAACAGCAAATGTTCCAACAACAACAACAACAACAATTAAAATTCAACAACAACCATTGTCACCACCCAAGCCGTTGGTGCCACAAAAATTACCAAAGGTAAAA-----------------AAAAAGT----------------------TTCCAAAATTCAAAATGCAAA----------------------------------------------AAAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTCAGCAACA-ATTATT
droRho1 scf7180000779588:165755-165882 + AAC------------------------------------AGCAAATGCTCCAACAACTA---CAACAACAATTAAAATTCAACAACAACCATTGTCACCACCCAAGCCGTTGGTGCCACAAAAATTGCCAAAGGTAAAA----------------AAGATCCCAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTGCAATA-ATAATT
droFic1 scf7180000454045:244044-244150 + AAC-----------------------------------------------------------------------------------AACCATTGTCACCACCAAAGCCGTTGGTGCCACAAAAATTAGCCAAGGTAAAC----------------AAAATCCCGAAAAG---------------------------------CAAA--AAAAA-ATCAA---------------------------------------------ACAAAT------------------------------------------------------------------------------------------------------------------------------------------------------CAAGAACAAAATCAGCA----------
droKik1 scf7180000302698:1357099-1357277 + AAC-----------------------------------------------------------------------------------AACCATTGTCACCACCCAAGCCATTGGTGCCTCAAAAATTGCCAAAGGTAAAGCAAAGAACAAAAATTAAAAATACAGAAAACCTG---GAAAAACATTTTCCAAA----AAAATGCTAA----------------------------------------------AAAAAAAAAAATTAAGA--AAAACA-AGCAACAATTGCAGCAGC----------CACT-GCAA---------------------------------------------------------------------------------------------------------------C-AAAACAGCAACA-A-----
droAna3 scaffold_13117:2568272-2568384 + AAC-----------------------------------------------------------------------------------AACCATTGTCACCACCCAAGCCGTTGGTGCCACAAAAATTGCCAAAGGTAAAA-----------------AATTGTCAAAG-------------------------------------------AAA-ATCAAACGCAGCAAAA----------------------------------------------------GCTGTCACA------------------------------------------------------------------------------------------------------------------------------------------TAGCTGCAGTTTGCAGCT
droBip1 scf7180000396696:557698-557856 - AAC-----------------------------------------------------------------------------------AACCATTGTCACCACCCAAGCCGTTGGTGCCACAAAAATTGCCAAAGGTAACA-----------------AAATTGTCAAAA--------------------------------TGAAAG----AAA-ATCAAAAGCAGCAAGAACCGCA--------------------------------------------------TTGCAGTCGC----------AACT-GCAA-----------------------------------------------------------------------------------------CATTGCAACATCTATTGCAACACCAAAACAACAACA-ACAACA
dp5 XL_group1a:4018287-4018398 - AAC-----------------------------------------------------------------------------------AACCATTGTCACCACCAAAGCCAATGGTGCCACAGAGACTACCAAAGGTAACA-----------------ATGAACCAC--AGCCAAAA-------------------------AACTAA----------------------------------------------AAAAAAAG------------------AGAAACAGTCACAAGAAGT------------------------------------------------------------------------------------------------------------------------------------------------ACAGCC
droPer2 scaffold_11:585122-585235 - AAC-----------------------------------------------------------------------------------AACCATTGTCACCACCAAAGCCAATGGTGCCACAGAGACTACCAAAGGTAACA-----------------ATGAACCAC--AGCCAAAA---------------A---------AACTAA----------------------------------------------AAAAAAAAA-----------------AGAAACAGTCACAAGAAGT------------------------------------------------------------------------------------------------------------------------------------------------ACAGCC
droWil2 scf2_1100000004401:464096-464204 - AGC-----------------------------------------------------------------------------------AACCATTGTCACCACCCAAGCCAATGGTGCCACAAAAATTGCCAAAGGTAAAA-----------------AAAACCGAC--ATCAAAG------------------------------------AAACATCAAAACCAACAAAAAT-GTATATTCATTCAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12928:3179226-3179319 + AAC-----------------------------------------------------------------------------------AACCATTGTCACCACCCAAGCCAATGGTCCCAAAAAAATTACCAAAGGTAACA-----------------ACAACAAA---------------------TTCCA---------------------------------------------------------------TACAAACAAATACC---------A--------------------------------------------------------------------------------------------------------------------------------------------------AA----AAATTGC----------A
droMoj3 scaffold_6473:358371-358467 - AAC-----------------------------------------------------------------------------------AACCATTGTCACCTCCCAAGCCAATGGTTCCACAAAAATTACCAAAGGTAAAA-----------------GTAAAAT-----------------------------------------------------CAT------------------------ACAAA----AAAAAAAAATAAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACTGCAACA-G-----
droGri2 scaffold_14853:2300397-2300519 + AAC-----------------------------------------------------------------------------------AACCATTGTCACCACCCAAGCCAATGGTGCCACAAAAGTTACCAAAGGTAAAA-----------------CGAACAAAAATAT---------------------------------CTAT---------------------------------A------GACAAAAAAAAAAAAACAAAAAATAAAAATAA-------------AAAAACACCAC-------------------------------------------------------------------------------------------------------------------------------------------ACACCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AAC-----------------------------------------------------------------------------------AACCATTGTCACCACCAAAGCCGTTGGTGCCACAAAAATTGCCAAAGGTAAAA-----------------AGATCCCAAAAAG---------------------------------CTAG----------------------------------------------AAAAAAAAAAATACAGATCAAAACAG-------------AGAACTGCAGCCCGCCACTCGCACTCTACGTCCACCCGATAAACACTCGGTACTCTANNNNNNNNGTGCACACAAAATTGTAGGGTGTGAGTCGAGTGGTAAAAAAGTGCCACCCTTGCAG-TTC-T--CTGGATCAAAATCAGCAAGA-ATTATTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................TCTACGTCCACCCGATAAACAC..............................................................................................................222042.808560000856000000000000
...........................................................................................................................................................................................................................................................................................................................TCTACGTCCACCCGATAAACACTCG...........................................................................................................252010.50210000010609100013000000
...........................................................................................................................................................................................................................................................................................................................TCTACGTCCACCCGATAAACACTCGGTA........................................................................................................28209.2518500000015732020030000
........................................................................................................................................................................................................................................................................................................................................................................................TGTGAGTCGAGTGGTAAA.....................................................18208.901780000178000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TGTGAGTCGAGTGGTAAAAAA..................................................21208.701740000174000000000000
...........................................................................................................................................................................................................................................................................................................................TCTACGTCCACCCGATAAACACTCGGT.........................................................................................................27206.751350002001311010000000
...............................................................................................................................................................................................................................................................................................................CGCCACTCGCACTCTACGTCCACCCG......................................................................................................................26204.60920000464600000000000
..........................................................................................................................................................................................................................................................................................................................................................................................TGAGTCGAGTGGTAAAAAAGTGCC.............................................24204.0581000000179000010000
..........................................................................................................................................................................................................................................................................................................................................................................................TGAGTCGAGTGGTAAAAAAGTGCCA............................................25203.5571000000170000000000
.....................................................................................................................................................................................................................................................................................................................TCGCACTCTACGTCCACCC.......................................................................................................................19202.3046000046000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TGTGAGTCGAGTGGTAAAAAAGTGCC.............................................26202.30460000000052813000000
.....................................................................................................................................................................................................................................................................................................AACTGCAGCCCGCCACTCGCACTC..................................................................................................................................24202.3046000046000000000000
...........................................................................................................................................................................................................................................................................................................................TCTACGTCCACCCGATAAACACTCGG..........................................................................................................26202.2044004200000020000000
..........................................................................................................................................................................................................................................................................................................................................................................................TGAGTCGAGTGGTAAAAAAGTGC..............................................23201.8537000000132003001000
..........................................................................................................................................................................................................................................................................................................................CTCTACGTCCACCCGATAAACACTCGGTA........................................................................................................29201.2525000000419020000000
........................................................................................................................................................................................................................................................................................................................................................................................TGTGAGTCGAGTGGTAAAAAAGTGC..............................................25201.2525000000100019320000
.................................................................................................................................................................................................................................................................................................................................................................................................................CACCCTTGCAG-TTC-T--CTGGATCAAAATC..............2811.00100100000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TGTGAGTCGAGTGGTAAAAAAGTG...............................................24200.7515000000001410000000
...........................................................................................................................................................................................................................................................................................................................TCTACGTCCACCCGATAAACACTCGGTACT......................................................................................................30200.7515000000150000000000
...............................................................................................................................................................................................................................................................................................................................................................................ATTGTAGGGTGTGAGTCGAGT...........................................................21200.6012000000010000011000
...........................................................................................................................................................................................................................................................................................................................TCTACGTCCACCCGATAAACACTC............................................................................................................24200.551100510050000000000
..........................................................................................................................................................................................................................................................................................................................CTCTACGTCCACCCGATAAACACTCGGT.........................................................................................................28200.45900000008100000000
...................................................................................................................................................................................................................................................................................................................................................................................TAGGGTGTGAGTCGAGTGGTAAAAAAG.................................................27200.40800000017000000000
............................................................................................................................................................................................................................................................................................................................................................................AAAATTGTAGGGTGTGAGTCGAGT...........................................................24200.35700000004020010000
...............................................................................................................................................................................................................................................................................................................CGCCACTCGCACTCTACGTCCACCCGA.....................................................................................................................27200.30600000003300000000
.............................................................................................................................................................................................................................................................................................................................................................................................GTCGAGTGGTAAAAAAGTGCCACCCT........................................26200.30600000000015000000
..........................................................................................................................................................................................................................................................................................................................................................................................TGAGTCGAGTGGTAAAAAAGTGCCACCC.........................................28200.30600000006000000000
........................................................................................................................................................................................................................................................................................................................................................................................TGTGAGTCGAGTGGTAAAAAAGT................................................23200.30600000000033000000
........................................................................................................................................................................................................................................................................................................................................................................................TGTGAGTCGAGTGGTA.......................................................16200.25500000000005000000
..........................................................................................................................................................................................................................................................................................................................CTCTACGTCCACCCGATAAACACTCGG..........................................................................................................27200.25500000000050000000
..................................................................................................................................................................................................................................................................................................................................................................................GTAGGGTGTGAGTCGAGTGG.........................................................20200.25500000000100004000
...........................................................................................................................................................................................................................................................................................................................TCTACGTCCACCCGATAAACACTCGGTACTC.....................................................................................................31200.20400000040000000000
................................................................................................................................................................................................................................................................................................................................................................................TTGTAGGGTGTGAGTCGAGTGGTA.......................................................24200.20400000000002020000
.........................................................................................................................................................................................................................................................................................................................................................................CACAAAATTGTAGGGTGTGAGTCGAG............................................................26200.20400000000020020000
..........................................................................................................................................................................................................................................................................................................................................................................ACAAAATTGTAGGGTGTGAGTCGAG............................................................25200.20400000010030000000
........................................................................................................................................................................................................................................................................................................................................................................................TGTGAGTCGAGTGGTAAAAAAGTGCCA............................................27200.20400000000004000000
............................................................................................................................................................................................................................................................................................................................................................................AAAATTGTAGGGTGTGAGTCGAGTGG.........................................................26200.20400000000040000000
................................................................................................................................................................................................................................................................................................................................................................................TTGTAGGGTGTGAGTCGAGTGGTAA......................................................25200.20400000002000020000
................................................................................................................................................................................................................................................................................................................................................................................TTGTAGGGTGTGAGTCGAGTGGTAAA.....................................................26200.20400000001021000000
....................................................................................................................................................................................................................................................................................AG-------------AGAACTGCAGCCCGCCACT.........................................................................................................................................21200.15300000000000003000
............................................................................................................................................................................................................................................................................................................................CTACGTCCACCCGATAAACACTCGG..........................................................................................................25200.15300030000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................TGGTAAAAAAGTGCCACCCTTGCAG-T.................................26200.15300000010002000000
.................................................................................................................................................................................................................................................................................................................................................................................TGTAGGGTGTGAGTCGAGTGG.........................................................21200.15300000000110001000
.......................................................................................................................................................................................................................................................................................................................GCACTCTACGTCCACCCGATAAACAC..............................................................................................................26200.15300000003000000000
.........................................................................................................................................................................................................................................................................................................................................................................CACAAAATTGTAGGGTGTGAG.................................................................21200.15300000011010000000
................................................................................................................................................................................................................................................................................................................................................................................TTGTAGGGTGTGAGTCGAG............................................................19200.15300000000200001000
..................................................................................................................................................................................................................................................................................................................CACTCGCACTCTACGTCCACCCGA.....................................................................................................................24200.10200000020000000000
...........................................................................................................................................................................................................................................................................................................................................................................CAAAATTGTAGGGTGTGAGTC...............................................................21200.10200000010000010000
..................................................................................................................................................................................................................................................................................................................CACTCGCACTCTACGTCCACCCGATAAA.................................................................................................................28200.10200000000020000000
.............................................................................................................................................................................................................................................................................................................................................................................AAATTGTAGGGTGTGAGTCGAGTGGT........................................................26200.10200000002000000000
..........................................................................................................................................................................................................................................................................................................................................................................ACAAAATTGTAGGGTGTGAG.................................................................20200.10200000001000001000
.......................................................................................................................................................................................................................................................................................................................GCACTCTACGTCCACCCGATAAACACT.............................................................................................................27200.10200000001100000000
...........................................................................................................................................................................................................................................................................................................................................................................................GAGTCGAGTGGTAAAAAAGTGC..............................................22200.10200000000002000000
................................................................................................................................................................................................................................................................................................................................................................................TTGTAGGGTGTGAGTCGAGA...........................................................20200.10200000000020000000
............................................................................................................................................................................................................................................................................................................................................................................AAAATTGTAGGGTGTGAGTCGAG............................................................23200.10200000001001000000
.........................................................................................................................................................................................................................................................................................................................................................................CACAAAATTGTAGGGTGTGAGTCGA.............................................................25200.10200000011000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAAGTGCCACCCTTGCAG-TTC-T--C..........................27200.10200010010000000000
...................................................................................................................................................................................................................................................................................................................................................................................TAGGGTGTGAGTCGAGTG..........................................................18200.10200000000000002000
.............................................................................................................................................................................................................................................................................................................................................................................AAATTGTAGGGTGTGAGTCGA.............................................................21200.10200000011000000000
...........................................................................................................................................................................................................................................................................................................................................................................................GAGTCGAGTGGTAAAAAAGTGCCACCCT........................................28200.10200000000002000000
...........................................................................................................................................................................................................................................................................................................................................................................CAAAATTGTAGGGTGTGAGTCGAGTGG.........................................................27200.10200000002000000000
................................................................................................................................................................................................................................................................................................................................................................................TTGTAGGGTGTGAGTCGAGTGGTAAAA....................................................27200.10200000000000020000
..........................................................................................................................................................................................................................................................................................................................................................................................TGAGTCGAGTGGTAAAAAAGTGCA.............................................24200.10200000000000020000
....................................................................................................................................................................................................................................................................................................................................................................................AGGGTGTGAGTCGAGTGGTAA......................................................21200.10200000000000002000
................................................................................................................................................................................................................................................................................................................................................................................TTGTAGGGTGTGAGTCGAGTGGTAAAAA...................................................28200.10200000000000020000
...................................................................................................................................................................................................................................................................................................................................................................................TAGGGTGTGAGTCGAGTGG.........................................................19200.10200000000001001000
.............................................................................................................................................................................................................................................................................................................................................................................AAATTGTAGGGTGTGAGTCGAGT...........................................................23200.10200000001010000000
.............................................................................................................................................................................................................................................................................................................................................................................AAATTGTAGGGTGTGAGTCGAGTGGTAAA.....................................................29200.10200000002000000000
.....................................................................................................................................................................................................................................................................................................................................................................................GGGTGTGAGTCGAGTGGTTT......................................................20200.05100000000000001000
..........................................................................................................................................................................................................................................................................................................................................................................................TGAGTCGAGTGGTAAAAAAGTGCCACCA.........................................28200.05100000001000000000
........................................................................................................................................................................................................................................................................................................TGCAGCCCGCCACTCGCACTCTACGTC............................................................................................................................27200.05100000000000010000
..................................................................................................................................................................................................................................................................................................................CACTCGCACTCTACGTCCACCT.......................................................................................................................22200.05110000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................GGGTGTGAGTCGAGTGGTAAAAAAGT................................................26200.05100000000000001000
...........................................................................................................................................................................................................................................................................................................................TCTACGTCCACCCGATAAACACTCGGTACTCTA...................................................................................................33200.05100000010000000000
....................................................................................................................................................................................................................................................................................................................................................................................AGGGTGTGAGTCGAGTGGT........................................................19200.05100000000000001000
......................................................................................................................................................................................................................................................................................................................CGCACTCTACGTCCACCCGATAAACACT.............................................................................................................28200.05100010000000000000
...........................................................................................................................................................................................................................................................................................................................TCTACGTCCACCCGATA...................................................................................................................17200.05100000000100000000
.............................................................................................................................................................................................................................................................................................................................................................................................GTCGAGTGGTAAAAAAGTGCCACCCA........................................26200.05100000001000000000
...................................................................................................................................................................................................................................................................................................................................................................................................TGGTAAAAAAGTGCCACCCTTGCAG-A.................................26200.05100000010000000000
.................................................................................................................................................................................................................................................................................................................................................................................TGTAGGGTGTGAGTCGAGTGGTA.......................................................23200.05100000000010000000
..................................................................................................................................................................................................................................................................................................................CACTCGCACTCTACGTCCACCCGATA...................................................................................................................26200.05100000000010000000
...............................................................................................................................................................................................................................................................................................................................................................................ATTGTAGGGTGTGAGTCGAG............................................................20200.05100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................CACAAAATTGTAGGGTGTGAGTCGATA...........................................................27200.05100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................ACACAAAATTGTAGGG.......................................................................16200.05100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................GTGAGTCGAGTGGTAAAAAAG.................................................21200.05100000000000010000
...................................................................................................................................................................................................................................................................................................................................................................................TAGGGTGTGAGTCGAGTGGTAAAA....................................................24200.05100000000100000000
...................................................................................................................................................................................................................................................................................................................................................................................TAGGGTGTGAGTCGA.............................................................15200.05100000010000000000
........................................................................................................................................................................................................................................................................................................TGCAGCCCGCCACTCGCACTCTACGTA............................................................................................................................27200.05100000000000010000
....................................................................................................................................................................................................................................................................................AG-------------AGAACTGCAGCCCGCCACTCGC......................................................................................................................................24200.05100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................CGAGTGGTAAAAAAGTGC..............................................18200.05100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................TGTGAGTCGAGTGGTAAAAAAGTGCCACCCT........................................31200.05100000001000000000
.........................................................................................................................................................................................................................................................................................................................................................................................GTGAGTCGAGTGGTA.......................................................15200.05100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................AAGTGCCACCCTTGCAG-TTC-T--CTGG.......................25200.05100000001000000000
.............................................................................................................................................................................................................................................................................................................................................................................................GTCGAGTGGTAAAAAAGTGCCACCCTT.......................................27200.05100000000001000000
..........................................................................................................................................................................................................................................................................................................................CTCTACGTCCACCCGATAAACACTCGGTACTC.....................................................................................................32200.05100000010000000000
............................................................................................................................................................................................................................................................................................................................CTACGTCCACCCGATAAACACTCGGT.........................................................................................................26200.05100000010000000000
.....................................................................................................................................................................................................................................................................................................................TCGCACTCTACGTCCACCCGATAAACA...............................................................................................................27200.05100000000100000000
.........................................................................................................................................................................................................................................................................................................................................................................CACAAAATTGTAGGGTGTGA..................................................................20200.05100000001000000000
...........................................................................................................................................................................................................................................................................................................................TCTACGTCCACCCGATAAACACTCGGTAC.......................................................................................................29200.05100000000000001000
.................................................................................................................................................................................................................................................................................................................CCACTCGCACTCTACGTCCACCCGA.....................................................................................................................25200.05100000000000010000
.....................................................................................................................................................................................................................................................................................................................................CCCGATAAACACTCGGTA........................................................................................................18200.05100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................CACACAAAATTGTAGGGTGTGAG.................................................................23200.05100000000010000000
...................................................................................................................................................................................................................................................................................................................................................................................................TGGTAAAAAAGTGCCACCCTTGCA....................................24200.05100000000000010000
............................................................................................................................................................................................................................................................................................................................................................................................AGTCGAGTGGTAAAAAAGTG...............................................20200.05100000000010000000
.............................................................................................................................................................................................................................................................................................................................................................................AAATTGTAGGGTGTGAGT................................................................18200.05100000000000001000
.............................................................................................................................................................................................................................................................................................................................TACGTCCACCCGATAAACACTCGGT.........................................................................................................25200.05100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................AATTGTAGGGTGTGAGTCGAG............................................................21200.05100000000000001000
........................................................................................................................................................................................................................................................................................................................................................................ACACAAAATTGTAGGGTGTGA..................................................................21200.05100000010000000000
.................................................................................................................................................................................................................................................................................................................................................................................TGTAGGGTGTGAGTCGAGTGGTAAA.....................................................25200.05100000000100000000
.................................................................................................................................................................................................................................................................................................................................................................................TGTAGGGTGTGAGTCGAGTGGTAAAA....................................................26200.05100000000010000000
...................................................................................................................................................................................................................................................................................................................................................................................................TGGTAAAAAAGTGCCACCCTTG......................................22200.05100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................TGTGAGTCGAGTGGTAAAAAAGTGCCACCC.........................................30200.05100000001000000000
................................................................................................................................................................................................................................................................................................................................................................................TTGTAGGGTGTGAGTCGA.............................................................18200.05100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................CACAAAATTGTAGGGTGTGAGTCGAGTGG.........................................................29200.05100000001000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTGCCACCCTTGCAG-TTC-T--CTGG.......................27200.05100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................ACACAAAATTGTAGGGTGTG...................................................................20200.05100000000000001000
....................................................................................................................................................................................................................................................................................................................................................................................AGGGTGTGAGTCGAGTGGTAAAAA...................................................24200.05100000001000000000
........................................................................................................................................................................................................................................................................................................................................................................................TGTGAGTCGAGTGGTAAAAAAGTGCT.............................................26200.05100000000100000000
....................................................................................................................................................................................................................................................................................AG-------------AGAACTGCAGCCCGCCACTCGCAAA...................................................................................................................................27200.05100000000000010000
....................................................................................................................................................................................................................................................................................AG-------------AGAACTGCAGCCCGCCAC..........................................................................................................................................20200.05100000000000001000
......................................................................................................................................................................................................................................................................................................................................................................................GGTGTGAGTCGAGTGGTAAAAAA..................................................23200.05100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................CAAAATTGTAGGGTGTGAG.................................................................19200.05100000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................TAGGGTGTGAGTCGAGTTT.........................................................19200.05100000000000001000
....................................................................................................................................................................................................................................................................................................................................................................................AGGGTGTGAGTCGAGTGG.........................................................18200.05100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................ACAAAATTGTAGGGTGTGAGTCGA.............................................................24200.05100000000000010000
...................................................................................................................................................................................................................................................................................................................................................................................TAGGGTGTGAGTCGAGTGGTAAAAAA..................................................26200.05100000000010000000
..........................................................................................................................................................................................................................................................................................................................................................................................TGAGTCGAGTGGTAAAAAAGTGCCACA..........................................27200.05100000001000000000
........................................................................................................................................................................................................................................................................................................................................................................................TGTGAGTCGAGTGGTAAAAAAGTGCCAC...........................................28200.05100000001000000000
.......................................................................................................................................................................................................................................................................................................................................CGATAAACACTCGGTACTCT....................................................................................................20200.05110000000000000000
...........................................................................................................................................................................................................................................................................................................................TCTACGTCCACCCGATAAAC................................................................................................................20200.05100000000001000000
.............................................................................................................................................................................................................................................................................................................................TACGTCCACCCGATAAACACTCGGTAC.......................................................................................................27200.05100010000000000000
....................................................................................................................................................................................................................................................................................................................................................................................AGGGTGTGAGTCGAGTGGTAAAAAAG.................................................26200.05100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................ACACAAAATTGTAGGGTGTGAGTCGAG............................................................27200.05100000010000000000
.........................................................................................................................................................................................................................................................................................................................ACTCTACGTCCACCCGATA...................................................................................................................19200.05100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................TGAGTCGAGTGGTAAAAAAGT................................................21200.05100000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................GTAGGGTGTGAGTCGA.............................................................16200.05100000010000000000
droSec2
AAC-----------------------------------------------------------------------------------AACCATTGTCACCACCAAAGCCGTTGGTGCCACAAAAATTGCCAAAGGTAAAA-----------------AGATCCCAAAAAG---------------------------------CTAG----------------------------------------------AAAAAA---AATACAGA------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAAA----------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
AAC----------------AACAACACTAAGACTACAACATCAAACGCTCCAACAG---------CAACAATTAAAATTCAGCAACAACCATTGTCACCACCAAAGCCGTTGGTGCCACAAAAATTGCCAAAGGTAAAA-----------------AGATCCCAAAAA--------------------------------CGCTAG----------------------------------------------AAAACAAA-AATACA------------------------------------------------------------------------------------------------------------------------------------------------------------GATCAAAATCAGCAACA-ATTATTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................CATTGTCACCACCAAAGCC...................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................CACCAAAGCCGTTGGTGCCACA.......................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................ATTAAAATTCAGCAACCG.......................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CAC------------------------AAAGACTACAACATCAAACGCTCCAACAG---------CAACAATTAAAATTCAGCAACAACCATTGTCACCACCAAAGCCGTTGGTGCCACAAAAATTGCCAAAGGTAAAA-----------------AGATCCCAAAACG---------------------------------CTAG----------------------------------------------AGCAA-----ATACA------------------------------------------------------------------------------------------------------------------------------------------------------------GATTAAAATCTGCAACA-ATTATTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................TCAGCAACAACCATTGTCAC.............................................................................................................................................................................................................................................................................................................................................................2011.0010100000
droYak3
AACAACCCATATTACCAACAACAACACTAAGACTACAACATCAAACGCTCCAACAG---------CTACAATTAAAATTCAGCAACAACCATTGTCACCACCAAAGCCGTTGGTGCCACAAAAATTGTCAAAGGTAAAA-----------------AGATCCCAAAAAG---------------------------------CTAG----------------------------------------------AAAAAAAA----ACA------------------------------------------------------------------------------------------------------------------------------------------------------------GATCAAAATCAGCAACA-ATTATTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................TGTCACCACCAAAGCCGTTGGTGCCA.........................................................................................................................................................................................................................................................................................................................................2611.00101000000000
.....................................................................................CAACCATTGTCACCACCAAAGCCGTTG...............................................................................................................................................................................................................................................................................................................................................2711.00100000010000
droEug1
AAC-----------------------------------------------------------------------------------AACCATTGTCACCACCAAAGCCGTTGGTGCCACAAAAATTGCCAAAGGTAAAA-----------------AC----CAAAAAA------AAAAGAGAAATTCCACA----AAAATTCTAAAAAAAAA-ACCAA---------------------------------AAAAAC---ATTGCCAAT------------------------------------------------------------------------------------------------------------------------------------------------------CAAGAACAAAATCAGCAACA-ATTATTSizeHit CountTotal NormTotal
No Reads
droBia1
AAC-----------------------------------------------------------------------------------AACCATTGTCACCGCCAAAGCCGTTGGTGCCACAAAAATTGCCCAAGGTAAAA----------------CAAATCCCGAAAAGTAACAA---------------AAAT----------TA----------------------------------------------A-----------GTAAA----TA---AAAAATAATAT-----------------------------------------------------------------------------------------------------------------------------------CAAGAACCAAATCAGCAACA-AATATTSizeHit CountTotal NormTotal
No Reads
droTak1
AAC-----------------------------------------------------------------------------------AACCATTGTCACCACCAAAGCCGTTGGTGCCACAAAAATTGCCAAAGGTAAAA-----------------ATATCCCATAAAG---------------------------------CGAA----------------------------------------------AGCAAA---AACAA-------------------------------------------------------------------------------------------------------------------------------------------------------------AAACCCAATCAG------------SizeHit CountTotal NormTotal
No Reads
droEle1
C-----------------------------TACAACAACAGCAAATGTTCCAACAACAACAACAACAACAATTAAAATTCAACAACAACCATTGTCACCACCCAAGCCGTTGGTGCCACAAAAATTACCAAAGGTAAAA-----------------AAAAAGT----------------------TTCCAAAATTCAAAATGCAAA----------------------------------------------AAAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTCAGCAACA-ATTATTSizeHit CountTotal NormTotal
No Reads
droRho1
AAC------------------------------------AGCAAATGCTCCAACAACTA---CAACAACAATTAAAATTCAACAACAACCATTGTCACCACCCAAGCCGTTGGTGCCACAAAAATTGCCAAAGGTAAAA----------------AAGATCCCAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTGCAATA-ATAATTSizeHit CountTotal NormTotal
No Reads
droFic1
AAC-----------------------------------------------------------------------------------AACCATTGTCACCACCAAAGCCGTTGGTGCCACAAAAATTAGCCAAGGTAAAC----------------AAAATCCCGAAAAG---------------------------------CAAA--AAAAA-ATCAA---------------------------------------------ACAAAT------------------------------------------------------------------------------------------------------------------------------------------------------CAAGAACAAAATCAGCA----------SizeHit CountTotal NormTotal
No Reads
droKik1
AAC-----------------------------------------------------------------------------------AACCATTGTCACCACCCAAGCCATTGGTGCCTCAAAAATTGCCAAAGGTAAAGCAAAGAACAAAAATTAAAAATACAGAAAACCTG---GAAAAACATTTTCCAAA----AAAATGCTAA----------------------------------------------AAAAAAAAAAATTAAGA--AAAACA-AGCAACAATTGCAGCAGC----------CACT-GCAA---------------------------------------------------------------------------------------------------------------C-AAAACAGCAACA-A-----SizeHit CountTotal NormTotal
No Reads
droAna3
AAC-----------------------------------------------------------------------------------AACCATTGTCACCACCCAAGCCGTTGGTGCCACAAAAATTGCCAAAGGTAAAA-----------------AATTGTCAAAG-------------------------------------------AAA-ATCAAACGCAGCAAAA----------------------------------------------------GCTGTCACA------------------------------------------------------------------------------------------------------------------------------------------TAGCTGCAGTTTGCAGCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................TGTCACCACCCAAGCCGTTGGT.............................................................................................................................................................................................................................................................................................................................................2211.001100000
droBip1
AAC-----------------------------------------------------------------------------------AACCATTGTCACCACCCAAGCCGTTGGTGCCACAAAAATTGCCAAAGGTAACA-----------------AAATTGTCAAAA--------------------------------TGAAAG----AAA-ATCAAAAGCAGCAAGAACCGCA--------------------------------------------------TTGCAGTCGC----------AACT-GCAA-----------------------------------------------------------------------------------------CATTGCAACATCTATTGCAACACCAAAACAACAACA-ACAACASizeHit CountTotal NormTotal
No Reads
dp5
AAC-----------------------------------------------------------------------------------AACCATTGTCACCACCAAAGCCAATGGTGCCACAGAGACTACCAAAGGTAACA-----------------ATGAACCAC--AGCCAAAA-------------------------AACTAA----------------------------------------------AAAAAAAG------------------AGAAACAGTCACAAGAAGT------------------------------------------------------------------------------------------------------------------------------------------------ACAGCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................TGCCACAGAGACTACCAAAG..........................................................................................................................................................................................................................................................................................................................2011.0010100000000
droPer2
AAC-----------------------------------------------------------------------------------AACCATTGTCACCACCAAAGCCAATGGTGCCACAGAGACTACCAAAGGTAACA-----------------ATGAACCAC--AGCCAAAA---------------A---------AACTAA----------------------------------------------AAAAAAAAA-----------------AGAAACAGTCACAAGAAGT------------------------------------------------------------------------------------------------------------------------------------------------ACAGCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................CACAGAGACTACCAAAGGTAACA-----------------ATGAAC.............................................................................................................................................................................................................................................................................................2911.001100000
droWil2
AGC-----------------------------------------------------------------------------------AACCATTGTCACCACCCAAGCCAATGGTGCCACAAAAATTGCCAAAGGTAAAA-----------------AAAACCGAC--ATCAAAG------------------------------------AAACATCAAAACCAACAAAAAT-GTATATTCATTCAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................CAAGCCAATGGTGCCACAAAAATTGCCA.............................................................................................................................................................................................................................................................................................................................2811.00100010
droVir3
AAC-----------------------------------------------------------------------------------AACCATTGTCACCACCCAAGCCAATGGTCCCAAAAAAATTACCAAAGGTAACA-----------------ACAACAAA---------------------TTCCA---------------------------------------------------------------TACAAACAAATACC---------A--------------------------------------------------------------------------------------------------------------------------------------------------AA----AAATTGC----------ASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
AAC-----------------------------------------------------------------------------------AACCATTGTCACCTCCCAAGCCAATGGTTCCACAAAAATTACCAAAGGTAAAA-----------------GTAAAAT-----------------------------------------------------CAT------------------------ACAAA----AAAAAAAAATAAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACTGCAACA-G-----SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................GTTCCACAAAAATTACCAAAGAGC.......................................................................................................................................................................................................................................................................................................................2411.001000001
droGri2
AAC-----------------------------------------------------------------------------------AACCATTGTCACCACCCAAGCCAATGGTGCCACAAAAGTTACCAAAGGTAAAA-----------------CGAACAAAAATAT---------------------------------CTAT---------------------------------A------GACAAAAAAAAAAAAACAAAAAATAAAAATAA-------------AAAAACACCAC-------------------------------------------------------------------------------------------------------------------------------------------ACACCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 10:13 PM