ID:

dsi_14854

 Coordinate:

x:18916207-18916498 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-57.8 -57.6 -57.5

Flybase annnotation

exon [x_18916499_18916702_+]; CDS [x_18916499_18916702_+]; exon [x_18916003_18916206_+]; CDS [x_18916003_18916206_+]; intron [x_18916207_18916498_+]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAAGTGCGACCAGCCCTTCAATGTGGACTGCGAGGACCGCACTGAGCTCCGTAAGTTGTTTCCGAAACTATGTCAAGGCAAAGCTAAACTGGTTGCATCATTATTAACTTGCTAATGAGCGCATCAGTTGAAGAGATGAGTTGGTAAAGAATAAGGAGCCTTTTGCCAAAAACGTAGCATACTTTTGGACATCTCTATATTTGAAGCAAATACACCATTACAATGAGCTTTCCAAGAGTAGGCCCACGTCTTTTGGCATTGCCACTTCAGATGATAGCTCATTGCAGTTATGCAGCTCCTTGCTAGACGGAGGAACTAACCCTGTTCGGTTTCCCTTCACAGAGGAGCCCAAGTCCAGCAAGTACTGCCCGCGCAAGAACGGCTTCTTCGCG
*****************************************************************************************************************(((((((..((((.((((((........((((((................((((((((((((.((.((((((((((...(((..((((((...))))))............)))...)))))))))).))..)))).)))))))))))))))))))).)))).)))))))(((....)))((.(((((........))))).)).....********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
 M025
embryo
 O001
Testis
 SRR902008
ovaries
............................................................................................TTGCATCATCATTAACTTGCTAATGAGA................................................................................................................................................................................................................................................................................ 28 2 1 1.00 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................TTCACTGTGGAGCCCAAGTCA.................................... 21 3 2 1.00 2 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................TTGCAGTTATGTAGCTCCTTG.......................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0
.....................................CGCACTGAGCTCCGTAAGTTG.............................................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................................AATGAGCGCATCAGTTGAAGAGATGA............................................................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................TTCACTGTGGAGCCCAAGTCC.................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................GAGGGCCGCACTGAGCTCC...................................................................................................................................................................................................................................................................................................................................................... 19 1 1 1.00 1 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................................................................................................TAGACGGAGGAACTAACCC...................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................TTTGGACATCTCTATATTT.............................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0
............................................................................................................................................................................CGTAGCATACTTTTGGACATCTCTA................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................ATACTTTTGGACATCTCTAA.................................................................................................................................................................................................. 20 1 2 0.50 1 0 0 0 0 0 0 0 0 1
............................................................................................................................................................................................................................................................................................................................................................................CTAGCCCCGCAAGAACGGC......... 19 3 7 0.14 1 0 0 0 1 0 0 0 0 0
................................................................................................................................................TAAGGAATAAGGAGCCC....................................................................................................................................................................................................................................... 17 2 9 0.11 1 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................CAGATGATAGCTCTTT............................................................................................................. 16 1 9 0.11 1 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................................TACTAACCGCGCAAG............... 15 2 20 0.05 1 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................................................TGCGCGCAAGAACGGATT....... 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

GTTCACGCTGGTCGGGAAGTTACACCTGACGCTCCTGGCGTGACTCGAGGCATTCAACAAAGGCTTTGATACAGTTCCGTTTCGATTTGACCAACGTAGTAATAATTGAACGATTACTCGCGTAGTCAACTTCTCTACTCAACCATTTCTTATTCCTCGGAAAACGGTTTTTGCATCGTATGAAAACCTGTAGAGATATAAACTTCGTTTATGTGGTAATGTTACTCGAAAGGTTCTCATCCGGGTGCAGAAAACCGTAACGGTGAAGTCTACTATCGAGTAACGTCAATACGTCGAGGAACGATCTGCCTCCTTGATTGGGACAAGCCAAAGGGAAGTGTCTCCTCGGGTTCAGGTCGTTCATGACGGGCGCGTTCTTGCCGAAGAAGCGC
**********************************************************************(((((((..((((.((((((........((((((................((((((((((((.((.((((((((((...(((..((((((...))))))............)))...)))))))))).))..)))).)))))))))))))))))))).)))).)))))))(((....)))((.(((((........))))).)).....***************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
...............................................................................................................................................................................................................................................................................................................................................................................GGGCGCGTTCTTGCCGAAGAA.... 21 0 1 2.00 2 0 2 0 0 0
.............................CGCTCCTGGCGTGACTCGAGGCAT................................................................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................AGAGATATAACCTTCGTTTATGTGGT............................................................................................................................................................................... 26 1 1 1.00 1 0 0 1 0 0
...............................................................................................................................................................................................................................................................................................AATACGTCGAGGAACGATCTG.................................................................................... 21 0 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................................TTCGGGTTCAGGTCGTTCATGA.......................... 22 1 1 1.00 1 0 0 0 0 1
............................................................AGGCTTTGATACAGTTCCGTTGCGGTT................................................................................................................................................................................................................................................................................................................. 27 2 1 1.00 1 0 0 0 1 0
.................................CCTGGCGTGACTCGAC....................................................................................................................................................................................................................................................................................................................................................... 16 1 4 0.50 2 2 0 0 0 0
.................................CCAGGCGTGACTCGA........................................................................................................................................................................................................................................................................................................................................................ 15 1 5 0.20 1 1 0 0 0 0
................................................................................................................................................................AAAACGGTTTTTGCA......................................................................................................................................................................................................................... 15 0 6 0.17 1 1 0 0 0 0
..............................GCTACAGGCGTGACTCGA........................................................................................................................................................................................................................................................................................................................................................ 18 2 6 0.17 1 1 0 0 0 0
.................................ACAGGCGTGACTCGAGGTA.................................................................................................................................................................................................................................................................................................................................................... 19 3 20 0.10 2 2 0 0 0 0
.....................................................................................................................................................................GGTTTTTGCGTAGTATGAAG............................................................................................................................................................................................................... 20 3 13 0.08 1 0 1 0 0 0
...............................CTACAGGCGTGACTCGA........................................................................................................................................................................................................................................................................................................................................................ 17 2 17 0.06 1 1 0 0 0 0
.............................................................................................................................................................................................................................................................................................................CGATGTGCCCCCTTG............................................................................ 15 2 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................................................................................GGAATGTTTCTCGGAAGG............................................................................................................................................................... 18 3 20 0.05 1 0 0 0 1 0
................................................................................................................................................................AAAAGGGATTTTGCATC....................................................................................................................................................................................................................... 17 2 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................CTTCTCGGGTTCAAGTCTT................................ 19 3 20 0.05 1 0 0 1 0 0
......................................................................................................................................................GATTACTCGGAAAACGG................................................................................................................................................................................................................................. 17 2 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:18916157-18916548 + dsi_14854 CAAGTGCGACCAGCCCTTCAATGTGGACTGCGAGGACCGCACTGAGCTCCGTAAGTTGTTTC----------------------------------------CG---------------------AAACTA-----------TGTCAAGGCAAAG--CTAAACTGGTT--------------GCATCATT--------A----------------------------------------------------------------------------------------------TTAACTTGCTAATGAGCGCATCAGTTGAAGAGATG-------------------------------------------------------------------------------------------------------------------------------AGTTGGTAAAGAATAAGGAGCCTTTTGCCAA--------AAACGTAGCATACTTTTGG---ACATCTCTATATTT---------------------------------------------------------------------------------------------------------------------GAAGCAAATACA-CCATTACAATGAGCTTTCCAAGAGTAG-GCCCACGTCTTTTGG---------------------------------------------------------CATTGCCACT-TCAGATGATA-GCTCATT--------------------GCAGTTATGCAGCTCCT-TGC-TAGACGGAGGAA--CTA-ACC-CTGTT-----CGGTTT-CCCTTC-ACAGAGGA--GCCCAAGTCCAGCAAGTACTGCCCGCGC-AAGAAC-GGCTTCTTCGCG
droSec2 scaffold_8:2307162-2307576 + CAAGTGCGACCAGCCCTTCAATGTGGACTGCGAGGACCGCACTGAGCTCCGTAAGTTGTTTC----------------------------------------CG---------------------AAACTA-----------TGTCAAGGCAAAG--CTAAACTGGTTACTCCAATTACATTGCATC-----------A----------------------------------------------------------------------------------------------TTAACTTGCTAATGGGCGCATCAGTTGAAAAGATG-------------------------------------------------------------------------------------------------------------------------------AGTTGGTAAAGAATAAGGAGCCGTTTGCCAA--------AAACGTAGCATACTTTTGG---ACATCTCTATTTTT---------------------------------------------------------------------------------------------------------------------GAAGCAAATACACCCATTACAATGAGCTTTTCCAGAGTAGGGCCTACGTCTTTTGGG--------------------------------------------------------CATTGCCACTTTCACATGATA-GCTCATT-------------------GGCAGTTATGTAGCTCCTTTGGTTAGACGGAGGAAACCTAAACC-CTGTTC----CGGTTT-CCCCTCACCAGAGGAGGCCCAAGGTCCAGCAAGTATTGGCCGCGCCAAGAACCGGCTTCTT----
dm3 chrX:20112290-20112734 + CAAGTGCGACCAGCCCTTCAATGTGGACTGCGAGGACCGCACTGAGCTCCGTAAGTAGCCCATCCCATCACC-----ATTTCTATTTCTAGGCTATTGTTACCGACCCCTTGGGAATGGTCACGAAAACTA-----------TGTCAAGGCAGAGCGCTAAACAGGTTATTCCAATTA-----CATCATTACATCACCATTAACTATG-----------------------TAGGGAGTTAAATTTAAATTCGCCTCTTAAG------------------------TTCAAATTTAGCTTACTAATGAAAGCATCAGTTGAAAGGATG-------------------------------------------------------------------------------------------------------------------------------AATT--------------------------------------TGTAGCATACTTTTGG---ACATCTCTATATTT---------------------------------------------------------------------------------------------------------------------AAAGCAAATACA-CCACTACAATGAGCTATCCAAAAGTT---------------------------------------------A--------------------------------------------------------T--------------------GTAGTTGTGTAGCTCCTTTGG-TAGACGGAGGAA--CTA-ACC-CTGTT-----CGGTTTCCCCTTC-ACAGAGGA--GCCGAAGTCCAGCAAGTACTGCCCGCGC-AAGAAC-GGCTTCTTCGCG
droEre2 scaffold_4690:10206488-10207069 + CAAGTGCGACCAGCCCTTCAATGTGGACTGCGAGGACCGCACGGAGCTCCGTAAGTTGCCCATCCCATGACCCATCAATTACTATTTCCAGGCTGTTGTTTCTGACT-CTCGGGAATGGTCA-AAAAACTG-----------GGTCAAGGCAAAG--CTGAACTGGTTGTTCG----------CATT--------ATCATAAACTATGCATGCAAATGTAAATAGCTCAGCTAGAGAGTT-----TTAGGCCGCATCTTATGCCAACTTAAGATATAGTTTCATTTTTCGGATT---------------AACATCAGTTGGAAACATCAAGGTTTCATATCTTAAAGTTGGTAAAAAAGCCATAAATATATTTATTGGTAAGGAATACGAGA------G-------------------------------------------------------------------GGGAAAAACGCGTTTGCAGA--------AAACGTAGCATACTTTTGG---ACTTCTCTACATTT---------------------------------------------------------------------------------------------------------------------AAAGGCGAGAAA-CCATTGTAATAAGCTGTCCAAAAGTCG-GCACTCAAACTTCAAG---------------------------------------------------------ATCAT-----------A------------ACTTTGATCATAGTTCGTAATACTGATGTAGCTTCT-TGG-TAGCTGGAGTAA--CTA-ACC-CCGCT-----TGGTTT-CCCTTC-ACAGAGGA--GCCCAAGTCCAGCAAGTACTGCCCGCGC-AAGAAC-GGCTTCTTCGCG
droYak3 X:19351731-19351995 + GTTAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATATT--------------------------------------------TATTGGCAAGGAATACGAGAATACAAG-----------------------------------------------------------------------AGGATATTTTTGCAAAAAAAAAAAAAACGTAGCATACTTTTGG---ACTTCTTCATATTC------------------------------------------------------------------------------------------------------------------------------------------ATAAGCTGTCCAAAAGTAG-GCCTACGTCTTTCGTG---------------------------------------------------------ATTGT-----------GGTAAAATCTTAGGCTTAGTTTATAGTTCCTAG------------TTCG-TGG-TAGATGGAGAAC--CTA-ACC-CCGTT-----TGCTTT-CCCTTC-ACAGAGGA--GCCCAAGTCCAGCAAGTACTGCCCGCGC-AAGAAC-GGCTTCTTCGCG
droEug1 scf7180000409230:283836-283893 - CAAGTGCGATCAGCCCTTCAATGTAGACTGCGAGGACCGCACAGAGCTCCGTAAGTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302126:2861208-2861341 + ATTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTATGACAGATTA----------------------------------------------------------TTGTAAGGTTG-CCTTAAGTCTCTAG----------------------------------------------------------------------------------------------------------------------------------AGATTCAATAT--CTA-ACC-CAATC-----GAATTT-CCCTTT-GCAGAGGA--GCCCAAGTCCAGCAAGTACTGCCCCCGC-AAGAAC-GGATTCTTCGCG
droTak1 scf7180000415248:208169-208227 - C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTT-ACAGAGGA--GCCCAAGTCCAGCAAGTACTGCCCGCGC-AAGAAC-GGCTTCTTCGCC
droEle1 scf7180000491272:1164584-1164660 + CTAACTCGATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTTT-CCATTC-ACAGAGGA--GCCCAAGTCCAGCAAGTACTGTCCGCGC-AAGAAC-GGCTTCTTCGCG
droRho1 scf7180000780057:45420-45781 + GAACTGCGACTATCTGCACAACGTGGATTGCGGCGATCGCACAGAGCTGGGTAAGTTGTCTT----------------------------------------TT---------------------AAATACGAAATC-------TTAAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTAAAAGATAATTTTGGATGTGTAGAACAACATTCAGTAAGCTGATAAGTTG--------AAAACTTA-----------------------------AAAAATGAATCAGTTAT-TAGATGACTT-TTCGCTTTA-----------------------------------------------------------AAATCCA----------------------------------------------------------GTTTAATTGTTGTTTTAAATTATTGGAGAGTT---------------------------------------------AAGAGCTTTGAAGCTTAACTTTTTTTGTATATTAAGGAG-TCATATGACA-GAACAGT--------------------ACATTAATATAC------------------------CTC-GTA----TTATCTTTGCTTT-CCC--T-GCAGAGCC--CCCAATCACCACCCCCCACTGCTCCCGC-CTGTAC-GGCATCTTC---
droFic1 scf7180000453910:271272-271643 - GAACTGCGACTATCTGCACAACGTGGATTGCGGCGATCGCACAGAGCTGGGTAAGCTTTAAT----------------------------------------TA---------------------AAGCAATAAACCAATAATAGCATGACTGAACCGTGAACA---------------------------------------------------------------------------------------------------------------------------------------------TGATAGCA------------------------------------------------------------------------------------------------------------------TTCAAT------------CGAAAACAAAATAACATAAAAAAAAACTACATACTTTGAAG--------GAACAC--------------------------------------------------------------------------------GAAAATTTAAAATCCGAATTTATATTTATTACTAATTTATAGTTGTTAATTGTTTTCGAAATTCATTCAATCAATTACGCTTATAAT--TGAATTA---------------------------------------------------------------------------------------------T-TTTAATTACA-GAA-----------------------------------AAACGTTAGT-AAAACATAAATA--TTA-ATCATTGATCTAATTAA--T-TTTTTC-ACAGAGCC--CCCAATCACCACCCCCCACTGCTCCCGC-CTGTAC-GGCATCTTC---
droKik1 scf7180000302395:579768-579830 + TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCATTT-ACAGAGGA--ACCCAAATCCAGCAAGTACTGCCCCCGC-AAGAAC-GGTTTCTTCGCC
droAna3 scaffold_13417:1672747-1673091 - CAAGTGTGACCAGCCCTTCAATGTCGACTGCGAGGATCGTACGGAATTGCGTAAGTGGACTT----------------------------------------GA---------------------AAATTAATAATT-------TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAGAGGCAGTTAAAAAGCAAGGTTTTTTTTA---ATTTTTCCACACTCTTTAGCCAAAAGGTTAAAACTTAATTAAAATCTGTGCTTGAATAAAATTTGAAAACTTGT-----------------------------------------------------------------TTTA-GAATTAAAATTTGACTTTAAA-------GACTAGATCTTTTGAAAACTTGTTTTCAAATTAATAGAAAATTAA-----------------------------------------AATGA----------------------------------AAAT----------------------------GTGTTTC-CTGTTTGGATTAT--T-TTTTTT-ACAGAGGA--GCCCAAGTCCAGCAAGTACTGTCCCTGT-AAGAAC-GGATTCTTCGCC
droBip1 scf7180000396621:199231-199304 + CAAGTGTGACCAGCCCTTCAATGTCGACTGCGAGGATCGTACCGAACTGCGTAAGTGGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTT-GAAATTATTTTA
dp5 XL_group1e:7150092-7150169 - A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTG-GTT-TTAAT-----TGATTT-CCATTT-ATAGAGGA--GCCCAAGTCCAGCAAGTATTGTCCGCGT-AAGAAC-GGGTTCTTTGCC
droPer2 scaffold_13:1403862-1403939 + A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTG-GTT-TTAAT-----TGATTT-CCATTT-ATAGAGGA--GCCCAAGTCCAGCAAGTATTGTCCACGT-AAGAAC-GGGTTCTTTGCC
droWil2 scf2_1100000004909:6633955-6634017 - CAAATGTGATCAGCCCTTCAATGTAGATTGCGAAGATCGCACAGAGCTACGTAAGTTTCTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C
droVir3 scaffold_13042:540743-540807 + CAAATGCGATCAGCCCTTCAACGTGGACTGCGAGGATCGCACAGAGCTGCGTAAGTTTTGCC----------------------------------------CA---------------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6308:612123-612189 - CAAATGCGATCAGCCCTTCAATGTGGACTGCGAGGATCGCACGCTCTTGCGTAAGTAATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCAAA
droGri2 scaffold_15203:5861125-5861184 + CAAGTGCGATCAGCCCTTCAATGTAGACTGTGAGGATCGGACGGAGTTGCGTAAGTTGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CAAGTGCGACCAGCCCTTCAATGTGGACTGCGAGGACCGCACTGAGCTCCGTAAGTTGTTTC----------------------------------------CG---------------------AAACTA-----------TGTCAAGGCAAAG--CTAAACTGGTT--------------GCATCATT--------A----------------------------------------------------------------------------------------------TTAACTTGCTAATGAGCGCATCAGTTGAAGAGATG-------------------------------------------------------------------------------------------------------------------------------AGTTGGTAAAGAATAAGGAGCCTTTTGCCAA--------AAACGTAGCATACTTTTGG---ACATCTCTATATTT---------------------------------------------------------------------------------------------------------------------GAAGCAAATACA-CCATTACAATGAGCTTTCCAAGAGTAG-GCCCACGTCTTTTGG---------------------------------------------------------CATTGCCACT-TCAGATGATA-GCTCATT--------------------GCAGTTATGCAGCTCCT-TGC-TAGACGGAGGAA--CTA-ACC-CTGTT-----CGGTTT-CCCTTC-ACAGAGGA--GCCCAAGTCCAGCAAGTACTGCCCGCGC-AAGAAC-GGCTTCTTCGCGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................CGCACTGAGCTCCGTAAGTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000100000000
...............................................................................................................................................................................................................................................................................................................AATGAGCGCATCAGTTGAAGAGATG-------------------------------------------------------------------------------------------------------------------------------A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGACGGAGGAA--CTA-ACC-C.................................................................................1911.00100100000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGG---ACATCTCTATATTT---------------------------------------------------------------------------------------------------------------------................................................................................................................................................................................................................................................................................................1911.00100001000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTAGCATACTTTTGG---ACATCTCTA..........................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTTTGG---ACATCTCTAA.........................................................................................................................................................................................................................................................................................................................................................................................................................2020.50100000000000010000
droSec2
CAAGTGCGACCAGCCCTTCAATGTGGACTGCGAGGACCGCACTGAGCTCCGTAAGTTGTTTC----------------------------------------CG---------------------AAACTA-----------TGTCAAGGCAAAG--CTAAACTGGTTACTCCAATTACATTGCATC-----------A----------------------------------------------------------------------------------------------TTAACTTGCTAATGGGCGCATCAGTTGAAAAGATG-------------------------------------------------------------------------------------------------------------------------------AGTTGGTAAAGAATAAGGAGCCGTTTGCCAA--------AAACGTAGCATACTTTTGG---ACATCTCTATTTTT---------------------------------------------------------------------------------------------------------------------GAAGCAAATACACCCATTACAATGAGCTTTTCCAGAGTAGGGCCTACGTCTTTTGGG--------------------------------------------------------CATTGCCACTTTCACATGATA-GCTCATT-------------------GGCAGTTATGTAGCTCCTTTGGTTAGACGGAGGAAACCTAAACC-CTGTTC----CGGTTT-CCCCTCACCAGAGGAGGCCCAAGGTCCAGCAAGTATTGGCCGCGCCAAGAACCGGCTTCTT----SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATACTTTTGG---ACATCT.............................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
dm3
CAAGTGCGACCAGCCCTTCAATGTGGACTGCGAGGACCGCACTGAGCTCCGTAAGTAGCCCATCCCATCACC-----ATTTCTATTTCTAGGCTATTGTTACCGACCCCTTGGGAATGGTCACGAAAACTA-----------TGTCAAGGCAGAGCGCTAAACAGGTTATTCCAATTA-----CATCATTACATCACCATTAACTATG-----------------------TAGGGAGTTAAATTTAAATTCGCCTCTTAAG------------------------TTCAAATTTAGCTTACTAATGAAAGCATCAGTTGAAAGGATG-------------------------------------------------------------------------------------------------------------------------------AATT--------------------------------------TGTAGCATACTTTTGG---ACATCTCTATATTT---------------------------------------------------------------------------------------------------------------------AAAGCAAATACA-CCACTACAATGAGCTATCCAAAAGTT---------------------------------------------A--------------------------------------------------------T--------------------GTAGTTGTGTAGCTCCTTTGG-TAGACGGAGGAA--CTA-ACC-CTGTT-----CGGTTTCCCCTTC-ACAGAGGA--GCCGAAGTCCAGCAAGTACTGCCCGCGC-AAGAAC-GGCTTCTTCGCGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................................................................................................................................................................................GATG-------------------------------------------------------------------------------------------------------------------------------AATT--------------------------------------TGTAGCATACTTTTGG---A..................................................................................................................................................................................................................................................................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCGCGC-AAGAAC-GGC.........1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................TGAAAGGATG-------------------------------------------------------------------------------------------------------------------------------AATT--------------------------------------TGTAGCATACTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................TCGCCTCTTAAG------------------------TTCAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATT--------------------------------------TGTAGCATACTTTTGG---ACATC..............................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--------------------------------------TGTAGCATACTTTTGG---ACATC..............................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGCATACTTTTGG---ACATCTC............................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAGCTCCTTTGG-TAG.....................................................................................................1812.0020000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAA--CTA-ACC-CTGTT-----CGGT....................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................TG-------------------------------------------------------------------------------------------------------------------------------AATT--------------------------------------TGTAGCATACTTTTGG---ACATC..............................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT--------------------------------------TGTAGCATACTTTTGG---ACAT...............................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GCCCTTCAATGTGGACTGCGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................CCGTAAGTAGCCCATCCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTTTGG---ACATCTCTATATT......................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............CCTTCAATGTGGACTGCGAGGACCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACTGCCCGCGC-AAGAAC-GGC.........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.....................TGTGGACTGCGAGGACCGCACTGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................TA-----------TGTCAAGGCAGAGCGCTAAACAGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT--------------------------------------TGTAGCATACTTTTGG---ACATC..............................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................GAAAACTA-----------TGTCAAGGCAGAGCGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................TCACGAAAACTA-----------TGTCAAGGCAGAGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................TGAAAGGATG-------------------------------------------------------------------------------------------------------------------------------AATT--------------------------------------TGTAGCAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCCCTTC-ACAGAGGA--GCCG............................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCCCGCGC-AAGAAC-GGC.........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................TGAAAGGATG-------------------------------------------------------------------------------------------------------------------------------AATT--------------------------------------TGTAGCATACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................TG-------------------------------------------------------------------------------------------------------------------------------AATT--------------------------------------TGTAGCATACTTTTGG---ACATA..............................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-ACAGAGGA--GCCGAAGTC.......................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.................................................................................................................................................................................................................................................................................................................................AAGGATG-------------------------------------------------------------------------------------------------------------------------------AATT--------------------------------------TGTAGCATACTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CAAGTGCGACCAGCCCTTCAATGTGGACTGCGAGGACCGCACGGAGCTCCGTAAGTTGCCCATCCCATGACCCATCAATTACTATTTCCAGGCTGTTGTTTCTGACT-CTCGGGAATGGTCA-AAAAACTG-----------GGTCAAGGCAAAG--CTGAACTGGTTGTTCG----------CATT--------ATCATAAACTATGCATGCAAATGTAAATAGCTCAGCTAGAGAGTT-----TTAGGCCGCATCTTATGCCAACTTAAGATATAGTTTCATTTTTCGGATT---------------AACATCAGTTGGAAACATCAAGGTTTCATATCTTAAAGTTGGTAAAAAAGCCATAAATATATTTATTGGTAAGGAATACGAGA------G-------------------------------------------------------------------GGGAAAAACGCGTTTGCAGA--------AAACGTAGCATACTTTTGG---ACTTCTCTACATTT---------------------------------------------------------------------------------------------------------------------AAAGGCGAGAAA-CCATTGTAATAAGCTGTCCAAAAGTCG-GCACTCAAACTTCAAG---------------------------------------------------------ATCAT-----------A------------ACTTTGATCATAGTTCGTAATACTGATGTAGCTTCT-TGG-TAGCTGGAGTAA--CTA-ACC-CCGCT-----TGGTTT-CCCTTC-ACAGAGGA--GCCCAAGTCCAGCAAGTACTGCCCGCGC-AAGAAC-GGCTTCTTCGCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................GACTGCGAGGACCGCACGGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001000
............GCCCTTCAATGTGGACTGCGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
droYak3
GTTAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATATT--------------------------------------------TATTGGCAAGGAATACGAGAATACAAG-----------------------------------------------------------------------AGGATATTTTTGCAAAAAAAAAAAAAACGTAGCATACTTTTGG---ACTTCTTCATATTC------------------------------------------------------------------------------------------------------------------------------------------ATAAGCTGTCCAAAAGTAG-GCCTACGTCTTTCGTG---------------------------------------------------------ATTGT-----------GGTAAAATCTTAGGCTTAGTTTATAGTTCCTAG------------TTCG-TGG-TAGATGGAGAAC--CTA-ACC-CCGTT-----TGCTTT-CCCTTC-ACAGAGGA--GCCCAAGTCCAGCAAGTACTGCCCGCGC-AAGAAC-GGCTTCTTCGCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
CAAGTGCGATCAGCCCTTCAATGTAGACTGCGAGGACCGCACAGAGCTCCGTAAGTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
ATTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTATGACAGATTA----------------------------------------------------------TTGTAAGGTTG-CCTTAAGTCTCTAG----------------------------------------------------------------------------------------------------------------------------------AGATTCAATAT--CTA-ACC-CAATC-----GAATTT-CCCTTT-GCAGAGGA--GCCCAAGTCCAGCAAGTACTGCCCCCGC-AAGAAC-GGATTCTTCGCGSizeHit CountTotal NormTotal
No Reads
droTak1
C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTT-ACAGAGGA--GCCCAAGTCCAGCAAGTACTGCCCGCGC-AAGAAC-GGCTTCTTCGCCSizeHit CountTotal NormTotal
No Reads
droEle1
CTAACTCGATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTTT-CCATTC-ACAGAGGA--GCCCAAGTCCAGCAAGTACTGTCCGCGC-AAGAAC-GGCTTCTTCGCGSizeHit CountTotal NormTotal
No Reads
droRho1
GAACTGCGACTATCTGCACAACGTGGATTGCGGCGATCGCACAGAGCTGGGTAAGTTGTCTT----------------------------------------TT---------------------AAATACGAAATC-------TTAAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTAAAAGATAATTTTGGATGTGTAGAACAACATTCAGTAAGCTGATAAGTTG--------AAAACTTA-----------------------------AAAAATGAATCAGTTAT-TAGATGACTT-TTCGCTTTA-----------------------------------------------------------AAATCCA----------------------------------------------------------GTTTAATTGTTGTTTTAAATTATTGGAGAGTT---------------------------------------------AAGAGCTTTGAAGCTTAACTTTTTTTGTATATTAAGGAG-TCATATGACA-GAACAGT--------------------ACATTAATATAC------------------------CTC-GTA----TTATCTTTGCTTT-CCC--T-GCAGAGCC--CCCAATCACCACCCCCCACTGCTCCCGC-CTGTAC-GGCATCTTC---SizeHit CountTotal NormTotal
No Reads
droFic1
GAACTGCGACTATCTGCACAACGTGGATTGCGGCGATCGCACAGAGCTGGGTAAGCTTTAAT----------------------------------------TA---------------------AAGCAATAAACCAATAATAGCATGACTGAACCGTGAACA---------------------------------------------------------------------------------------------------------------------------------------------TGATAGCA------------------------------------------------------------------------------------------------------------------TTCAAT------------CGAAAACAAAATAACATAAAAAAAAACTACATACTTTGAAG--------GAACAC--------------------------------------------------------------------------------GAAAATTTAAAATCCGAATTTATATTTATTACTAATTTATAGTTGTTAATTGTTTTCGAAATTCATTCAATCAATTACGCTTATAAT--TGAATTA---------------------------------------------------------------------------------------------T-TTTAATTACA-GAA-----------------------------------AAACGTTAGT-AAAACATAAATA--TTA-ATCATTGATCTAATTAA--T-TTTTTC-ACAGAGCC--CCCAATCACCACCCCCCACTGCTCCCGC-CTGTAC-GGCATCTTC---SizeHit CountTotal NormTotal
No Reads
droKik1
TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCATTT-ACAGAGGA--ACCCAAATCCAGCAAGTACTGCCCCCGC-AAGAAC-GGTTTCTTCGCCSizeHit CountTotal NormTotal
No Reads
droAna3
CAAGTGTGACCAGCCCTTCAATGTCGACTGCGAGGATCGTACGGAATTGCGTAAGTGGACTT----------------------------------------GA---------------------AAATTAATAATT-------TT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAGAGGCAGTTAAAAAGCAAGGTTTTTTTTA---ATTTTTCCACACTCTTTAGCCAAAAGGTTAAAACTTAATTAAAATCTGTGCTTGAATAAAATTTGAAAACTTGT-----------------------------------------------------------------TTTA-GAATTAAAATTTGACTTTAAA-------GACTAGATCTTTTGAAAACTTGTTTTCAAATTAATAGAAAATTAA-----------------------------------------AATGA----------------------------------AAAT----------------------------GTGTTTC-CTGTTTGGATTAT--T-TTTTTT-ACAGAGGA--GCCCAAGTCCAGCAAGTACTGTCCCTGT-AAGAAC-GGATTCTTCGCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGCAAGTACTGTCCCC......................1911.001010000
droBip1
CAAGTGTGACCAGCCCTTCAATGTCGACTGCGAGGATCGTACCGAACTGCGTAAGTGGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTT-GAAATTATTTTASizeHit CountTotal NormTotal
No Reads
dp5
A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTG-GTT-TTAAT-----TGATTT-CCATTT-ATAGAGGA--GCCCAAGTCCAGCAAGTATTGTCCGCGT-AAGAAC-GGGTTCTTTGCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTG-GTT-TTAAT-----TGATTT-CCATTT-ATAGAGGA--GCCCAAGTCCAGCAAGTATTGTCCACGT-AAGAAC-GGGTTCTTTGCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
CAAATGTGATCAGCCCTTCAATGTAGATTGCGAAGATCGCACAGAGCTACGTAAGTTTCTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
CAAATGCGATCAGCCCTTCAACGTGGACTGCGAGGATCGCACAGAGCTGCGTAAGTTTTGCC----------------------------------------CA---------------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
CAAATGCGATCAGCCCTTCAATGTGGACTGCGAGGATCGCACGCTCTTGCGTAAGTAATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCAAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CAAGTGCGATCAGCCCTTCAATGTAGACTGTGAGGATCGGACGGAGTTGCGTAAGTTGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 05:18 PM