ID:

dsi_14846

 Coordinate:

3r:19612546-19612695 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.3 -18.1 -18.1

Flybase annnotation

CDS [3r_19612696_19612926_-]; exon [3r_19612696_19612926_-]; intron [3r_19612363_19612695_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCCAACGAGTCCAATGGCCAGGTGGAGGATAGTCCACCAGTTATACGCAAGTATGTGATTATATAGTCAAAACCTAGTACAAGTTATAAGGCCAGAAATAATTGGGTAATGTTTTAATTATGATTTTTAAATGGGTTTTAGTCCGAATATTGATACAGTAATTGGGATGTAAAAATAATACAATAATAATTCTGTTTAAATATTAGGAAATTATCAGATTTGGCCTGTTAGGTTGTCCATTTATATTGTA
********************************************************************((((((((.((.(((((((((..((((......))))............))))))))).))..))))))))..(((((.(((((...))))).))))).*********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body
............................................................................................................................................................AGTTATTGGGATGTAAA............................................................................. 17 1 3 1.67 5 2 1 1 0 1 0
............................................................................................................................................................AGTTATTGGGATGTAA.............................................................................. 16 1 3 1.67 5 2 3 0 0 0 0
....................................................................AAAACCTAGTACAAGTTATAAGGC.............................................................................................................................................................. 24 0 1 1.00 1 0 0 0 1 0 0
..............................................................................................................................................CCGAATATTGATACAGTAATTGGGA................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0
............................................................................................................................................................AGTTATTGGGATGTA............................................................................... 15 1 7 0.71 5 3 1 0 0 1 0
.............................................................................................................................................................GTTATTGGGATGTAAA............................................................................. 16 1 6 0.67 4 1 2 1 0 0 0
................................................................................................................TTTAATTATGATGTTTAAATGTGTA................................................................................................................. 25 3 2 0.50 1 1 0 0 0 0 0
...........................................................................................................................................................CAGTTATTGGGATGTAAAC............................................................................ 19 2 2 0.50 1 0 0 0 0 0 1
..............................................................................................GAAATAATTGGGTAATCTTGTT...................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0
............................................................................................................................................................AGTTATTGGGATGTAAAA............................................................................ 18 1 2 0.50 1 1 0 0 0 0 0
..............................................................................................................................................................TTATTGGGATGTAAA............................................................................. 15 1 19 0.21 4 1 0 0 0 3 0
....................................................................................................................................................................GGATGTAAACATAATAGAGTA................................................................. 21 3 7 0.14 1 0 0 0 1 0 0
.........................................................................CGAGTACAAGTTATA.................................................................................................................................................................. 15 1 8 0.13 1 1 0 0 0 0 0
...............................................................................................................................................................TATTGGGATGTAAAA............................................................................ 15 1 20 0.10 2 2 0 0 0 0 0
............................................................................................................ATATTTTTATTATGATTTTTAAA....................................................................................................................... 23 2 10 0.10 1 1 0 0 0 0 0
........................AAGGATAGTCAACCAGATA............................................................................................................................................................................................................... 19 3 11 0.09 1 1 0 0 0 0 0
.....................................................................................................................TTATGATTTTGAAATGGC................................................................................................................... 18 2 18 0.06 1 0 1 0 0 0 0

Anti-sense strand reads

CGGTTGCTCAGGTTACCGGTCCACCTCCTATCAGGTGGTCAATATGCGTTCATACACTAATATATCAGTTTTGGATCATGTTCAATATTCCGGTCTTTATTAACCCATTACAAAATTAATACTAAAAATTTACCCAAAATCAGGCTTATAACTATGTCATTAACCCTACATTTTTATTATGTTATTATTAAGACAAATTTATAATCCTTTAATAGTCTAAACCGGACAATCCAACAGGTAAATATAACAT
***********************************************************************************((((((((.((.(((((((((..((((......))))............))))))))).))..))))))))..(((((.(((((...))))).))))).******************************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR902009
testis
 M053
female body
 SRR553488
RT_0-2 hours eggs
..............................................................................................................................................................................................................................CGGACAATCCAACAGGTA.......... 18 0 1 1.00 1 1 0 0 0
................................................................................................................................................................................................................................GGCAATCCAACAGGTAAGTAT..... 21 2 1 1.00 1 0 1 0 0
................................................................................................................................................................................................ACAAATTTATCCTCCTTTA....................................... 19 2 7 0.14 1 0 0 1 0
.....................................................................................................................................CCACAATGAGGCTTATA.................................................................................................... 17 2 12 0.08 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:19612496-19612745 - dsi_14846 GCCAACGAGTCCAATGGCCAGGTGGAGGATAGTCCACCAGTTATACGCAAGTATGTG--ATT-ATATAGTCAAAA-CCTAGTACAAGT----T-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAGGCCAGAAATAATTGGGTAATGTTTTAATTATGAT---------------------------------TTT--TAAATGG----------GTTTTAGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAAT-ATTGATACAGTAATTGGGATGT---AAAAATAATACAATAA--------------------------------------------------TAATTCTGTTTAAATATT-AGGAAA--TTATCAGATTTGGCCTGTTAGGTTGTCCA--------------------------------------------------------TTTA-----------------------------------------------------------------------TATTGT-------------------------------------A
droSec2 scaffold_0:20412878-20413132 - GCCAACGAATCCAATGGCCAGGTGGAGGATAGTCCACCAGTTATACGCAAGTATGTG--ATT-ATATAGTCAAAA-CCTAGTACAAGT----T-------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAGGCCACAAGTAATTGGGTAATGTTTTTATTATGAT---------------------------------TTT--TAAATGG----------GTTTAAGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAAT-ATTGATACAGTAATTGGTATGT---AAAAATAATACAATAA--------------------------------------------------TAATTCTGTTTAAATATT-AGGAAA--TTATCAGATTTGGCCTGTTAGGTTGTCCA--------------------------------------------------------TTTA-----------------------------------------------------------------------TATTGTATATA--------------------------------C
dm3 chr3R:20080534-20080765 - GCCAACGAGTCCAATGGCCAGGTGGAGGATAGTCCACCAGTTATACGCAAGTATGTG--ATT-ATGTGGTCAAAA-CCTAGTACAAGT----T-------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAGGCCAGAAATAATTGGGTAATGTTTTTATTATGAT---------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC---------------------CGTAC-ATTGAAACAGTAATTGGGATGTTACAAAAATAATACA-------------------------------------------------------TTTTCTATTTAAATATT-AGGATA--TTATCAGATTTGGCCTGTTAGGTTGTCCA--------------------------------------------------------TTTA-----------------------------------------------------------------------AATTGT-------------------------------------A
droEre2 scaffold_4820:7981849-7982062 + GCCAACGAGACCAACGGCCAGGTGGAGGACAGTCCACCAGTTATCCGCAAGTATGTG--ATT-ATATGGTCAAAA-CCTAATACAAGT----T-------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAGGCCAGAAATAATTGGGTAATGTCTATATTGTA-T---------------------------------TCC--TAAACGG----------GATCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---GCAAAAATGA---------------------------------------------------TA----ATTTGTCTGTTGAAATATT-GGATAA--GTATCAGATTTGGCCTGTTAGGTTATCAA--------------------------------------------------------TTTA-----------------------------------------------------------------------TATTG---------------------------------------
droYak3 3R:26426398-26426584 + GCCAACGAGTCCAACGGCCAGGTGGAGGATAGTCCACCAGTTATCCGCAAGTATGTG--ATT-ATATGGTCAAAA-CCTAATTGAAGT----T-------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAGGCCGGAAATGAGAGGGTGATGTCTATAT--------------------------------------------TAAATGG----------GGTTTAGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAATGGG---------------------------------------------------------------------------------------------------CAAAAA---------AGAT----ATTTT---G----------------------------TTGGCCAGTTAGGTTGTCCA--------------------------------------------------------TTTA-----------------------------------------------------------------------TATTG---------------------------------------
droEug1 scf7180000409798:308308-308546 + GCCAACGAGTCTAACGGTCAGGTGGAGGACAGTCCGCCAGTCATCCGCAAGTATGTA--ATC-ATATAGTCCAAAAATAA---TG--------------------------------------------------------------------------GGGCAAAA----------------------------AC--------T------------------AATTTTGA------------------------------------------------------------G-AGTTAAAATGGGGTTTTGT-AATGTTTTATTGATCTT--TAAATGG----------GTTT---TC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAACTATT----------TTGGAACTT---AAACAAAAT-TAATAG-------------------------------------------TGATATATCTTTTTGATTAAACAAT-AGAAAAGAATATAATA--------------TTGTACA--------------------------------------------------------TATA------------------------------------------------------------------------ATTAT-------------------------------------A
droBia1 scf7180000302136:433242-433542 - GCCAACGAGTCCAACGGCCAGGTGGAGGATAGTCCGCCAGTTATTCGCAAGTATGTG--ATT-ATAATGTCTGAA-TCA---------------------------------------------------------------------------CTA--AGGAAAAG----------------------------AA--------T------------------ATCTTTGA------------------------------------------------------------G-ATT-AAAAAGGGACTATGT-ACTGTACA-TATATTTA--TTAAAGG----------GATG---CCCGAGAATGCCAATAGTTTTTATT---ATATTAAATACTAATGACATTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGAATAT---AAAAACAG-----TAATGATTT-----------------TGATAGTAAAACCTTTTTTAA-------TATTCTGATTAAATATT-TGAGAT--CCATCAGATTAAATTTGCTTATTTGTCAA--------------------------------------------------------TATA-----------------------------------------------------------------------TTTTGT-------------------------------------A
droTak1 scf7180000415769:2365939-2366241 + GCCAACGAGTCCAACGGCCAGGTGGAGGATAGTCCACCGGTTATCCGCAAGTATGTATGGTT-AAAAGGTTAAAAGAGAA---TAGGTTATA--------------------------------------------------------------CTA--GGGGAAAA----------------------------TC--------T------------------ATATATCA------------------------------------------------------------G-ATTTTAATAGGGTT-CTTT-AAAGTTA--------------------GCT------------------------------TAATTTTTTTAATGGTATATA---A---TATTTATA---------AAC----------------------------------------------------------------------------------------------------------------------------CAATAGTTCTAAATAAT----------------------------------------------------AAATCCTATTTTAATGGATATTATAAAAAAAATTTAGATAATACATGTTATTATAATTAAAGATATAGGAAA--CCAACAGATTAGCCCTGTTTAGTCGTCAA--------------------------------------------------------TTTA-----------------------------------------------------------------------TGTTGTAA-----------------------------------A
droEle1 scf7180000491008:384350-384634 - GCCAACGAGTCCAATGGCCAGGTGGAGGATAGTCCACCAGTTATCCGCAAGTATGTG--AAA-ATTTTATTCAAAAACAA---AAGGTTACA-TGGACCTAAGATACT-TT------------C----------------------------------------------------------------------------------------------------TTTTCTGA------------------------------------------------------------G-ATGGTAATAGGGAT-GGGTATA---T--------------------TATTATATTT------------------------------TTTCTAAAGAATGTA---A---AACTTGCA---------AAG----------------------------------------------------------------------------------------------------------------------------TAAATATTTAAAATATT-------------------------------TT-----------CAATT--AAGC-----------------TGATAAAAGAAGTTTTTTCATTATATATCATTCTGATAAATTATTAAGGGGA--CTATCAAATAAGGCCTGTCTATTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAATTTA
droRho1 scf7180000779477:158807-159076 - GCCAACGAGTCCAATGGCCAGGTGGAGGATAGCCCACCAGTTATACGCAAGTATGTC--AAT-ATTTCGTCTAAAAACAA---TAGATTATTC-------GAA-----------------------------------------------ATA-CTT--GGGCAAAA----------------------------TA--------TTTTGTTTGT-------TTTTTTTTTA------------------------------------------------------------G-ATTTTAAAAGGGGT-ATATTTA--------------------------------------------------------------------------------------------TTATTTATTGA----------A-------------------------------------------------------A------------------------------------------------------------------------ATATT-------------------------------TC-----------GAAAG--GTTT-----------------TGATAAAAATAATTTTTTTAATACATATGATTCTTATAAACAATTTAAGGGA--CTATCAAATCAGGGCTGTTAGTTTGTACA--------------------------------------------------------TATG------------------------------------------------------T----------------TAATAA-------------------------------------A
droFic1 scf7180000453912:1245339-1245637 - GCCAACGAGTCCAACGGCCAGGTGGAGGATAGTCCACCAGTTATCCGCAAGTATGTG--GTT-GTAGTCTTTAAGAATAG---TAGGTTTCT-TTAGCCTAAA-----------------------------------------------ACC-CTT--TGCCAAAA----------------------------GC--------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATTTTTTTAG-----------------------A---------AACCTTAGGAAGATTGTGTCAAAGATATTTAATTTTTGAAGAACATGTTTAAAAACATAAATTATT-TTAAAGTACTGATTTGAAAATTGGTAAAACTGA---------TTTCAAATTTGTAA-------------------------------------------------------------------------------------AAT----------------------------------------------------GGGGA--TTATAATATCCGTCTTGT------------------------------------------------------------------------------------------------------------------------------AAATAT----------------------ATTGATAAAAACCCTCAG----TTAGATTTTA
droKik1 scf7180000302475:522726-523078 - GCCAACGAGTCCAACGGTCAGGTGGAGGATAGTCCGCCAGTTATACGCAAGTATGTT--ATA-AGATATCCAAAA-GCAAGAACGAGT----CGGGGTTTTAGCTAAT-TT------------A------------------------------A--TAAGGT--TCGGTGTA---------------GGCATAATATAGGGATATTGTTTTTATATGGATATTATGTTTTAAAAATTAAAAAAGGTAATATTTAAAGAAAGCGAAAAATAGTTATTTAAAGTTTATAAAATGTT---------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---------------------TGTAA-AT--------------------------------------------------------------------------------------------------------------------------------------------ATGCGTTTAAAGACGTTAAAAAGAGAGATTATTTGATAACTAAATTCAGTAAATTTAGATACAT-GA-GAAGCAGAAT-TTTTTTTAAATTAATATTAGTTTGTTACAAAGTTT----------------------TACTGT-------------------------------------A
droAna3 scaffold_13340:22416172-22416407 + GCCAACGAATCCAACGGCCAGGTGGAAGATAGTCCTCCAGTTATACGCAAGTATGTT--AGA-ATATTTTAAAT--------------TGT--------------ACT-TT------------CAT---------------TTTTGGTAAACTAT--ATAGGA--TCTATAATATTTTATAAAT------------------------------------------------------------------------------------------------------------------------------------------------ATTTA-------AATGCGGTTA----------------------------------------------------------TTAGTTAATGA----------A-------------------------------------------------------T------------------------------------------------------------------------ATTTT-------------------------------TC-----------GAAAG---ATT------------TGT-----T-------------------------AATTTTTTAA-------------------------------------------------AAAGGATAAATAGAAAAACTG----------------------------------TA---------------------------------------------TTAGCTGTAACTAT----------------------ATGTATATAATTACACAA-----------TTA
droBip1 scf7180000396721:739083-739332 - GCCAACGAATCCAACGGCCAGGTGGAAGATAGTCCTCCAGTTATACGCAAGTATGTG--GTA-AAC-TTTAAA-----------------------------------------------------------------------------ACC-CTTATAGGA--ACTA------------------------------------TTTTATTTATTGAGAATTTATTTTTTA------------------------------------------------------------A-AT--------------------------------ATCAA-------AATAAGGTTG----------------------------------------------------------TTAGTTAACGA----------A-------------------------------------------------------T------------------------------------------------------------------------ATTTT-------------------------------TC-----------AAAAA--TAAT------------TGT-----T-------------------------AATTTGTTTAAA-----AGATAA--ATATCAAAAGTGAACTATAATT------------------------------------------------------------------------------------------------------TTGGTATAAATTCTAGCTGTAACTAT----------------------ATGTATATAATTACACAT-----------TTA
dp5 2:14094373-14094634 - GCCAGCGAATCCAATGGCCAGGTGGAAGACAGTCCCCCTGTTATACGCAAGTATGTT--GAGTAGT---------------------------------------------------------------------------TTCTGGAAAAACAT--TGGGGA--AACATAACATTTTACAGAAAATG--------------------------------------------------------------------AC--------------GAGGGTGAGG----------------------------TGTAGG---C--------------------AATGAAATCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAATTAATGGGGATTCCAATAT---------AAAT----ATTTG---GGTGATA-----AG---------------------------------------------ATAAGGGTTTTA--CG----------------AATTATATTTGA----------------------------------------CTCGGGGGAGACAACAATTGTA----------------------TATACAGATATCTTGTGACGTGGTTTATTAGATTTTA
droPer2 scaffold_0:6347503-6347764 + GCCAGCGAATCCAATGGCCAGGTGGAAGACAGTCCCCCTGTTATACGCAAGTATGTT--GAGTAGT---------------------------------------------------------------------------TTCTGGAAAAACAT--TGGGGA--AACATAACATTCTATAGGAAATG--------------------------------------------------------------------AC--------------GAGGGTGAGG----------------------------TGTAGG---C--------------------AACGAAATCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAATTAATGGGGATTCCAATAT---------AAAT----ATTTG---GGTGATA-----AG---------------------------------------------ATAAGGGTTAAA--CG----------------AATTATATTTGA----------------------------------------CTCGGGGGAGACAACAATTGTA----------------------TATACAGATATCTTGTGACGTGGTTTATAAGAATTTA
droWil2 scf2_1100000004902:3141740-3141795 - GCCAATGAATCCAATGGTCAGGTGGAAGATAGTCCACCTGTTATACGCAAGTACGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13047:10914583-10914894 - dvi_16401 GCCAGCGAATCCAACGGTCAGGTGGAGGATAGTCCACCTGTCATACGCAAGTATGTT--ACC-AAC---CCAAAA-G----------TCGCA--------------CAAATTGAACAGAATTTTAGTATAGGGATATTAGGCCCTTGCAGCATAT--CGGTGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAC----------GGTG---CTGGTAAACAGCAATTTTTTTTTTTTTTAAGATATATACAAA---TATTTATAAGTATGTAA----------G-------------------------------------------------------G---------------T-CACTTCAGCAAGCCCGGTAATCGTTCCACTAGAGTC---TCTTTAAATAAGTAGGATATCTCCGATCTAT--------------------------------------------------------------TGA---------------------------------------------------TAACCAAAGCTAGTTCAGTATCTCGTTTG--------------------------------------------------------TACA-----------------------------------------------------------------------TATTAG-------------------------------------C
droMoj3 scaffold_6540:30860565-30860844 + dmo_2138 GCTAACGAATCCAATGGCCAGGTGGAGGATAGTCCTCCCGTCATACGCAAGTATGTG--TTT-GCAAGCCCAAAA-AGAA---TAGATA-TATATGTGTATAGCATAT-ATATAAT---------------GG--ATTAGGCACTTGTAG---------------------------------------AC-----------------------------------------------------------------AT--------------------------------------------------------------------------------------------GGTG---CAGGTCAAGAGAGAATT----------------------------------------------------------------------------------------------------------------GTATAGGAGAGAAAGG-CGAGTGAGAAAGCCTT---------TTTAAAGAGTGTGA-------------------------------------------------------------------------------------GAA----------------------------------------------------TG--------------TGAATTGAAAATCTTGTTTG--------------------------------------------------------TATATATGAGCTAGGCTATTTATTATAATTATTA----------------------TGTATCTATATCTATATCTATAT-------------------------------------CTA
droGri2 scaffold_14624:735203-735258 - GCCAGCGAATCCAACGGACAGGTGGATGATAGTCCACCAGTTATACGCAAGTATGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GCCAACGAGTCCAATGGCCAGGTGGAGGATAGTCCACCAGTTATACGCAAGTATGTG--ATT-ATATAGTCAAAA-CCTAGTACAAGT----T-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAGGCCAGAAATAATTGGGTAATGTTTTAATTATGAT---------------------------------TTT--TAAATGG----------GTTTTAGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAAT-ATTGATACAGTAATTGGGATGT---AAAAATAATACAATAA--------------------------------------------------TAATTCTGTTTAAATATT-AGGAAA--TTATCAGATTTGGCCTGTTAGGTTGTCCA--------------------------------------------------------TTTA-----------------------------------------------------------------------TATTGT-------------------------------------ASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................AAAA-CCTAGTACAAGT----T-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
......................................................................................................................................................................................................................................................................................................................................................................C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAAT-ATTGATACAGTAATTGGGA...............................................................................................................................................................................................................................................................................................................2511.00100000000100000000
droSec2
GCCAACGAATCCAATGGCCAGGTGGAGGATAGTCCACCAGTTATACGCAAGTATGTG--ATT-ATATAGTCAAAA-CCTAGTACAAGT----T-------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAGGCCACAAGTAATTGGGTAATGTTTTTATTATGAT---------------------------------TTT--TAAATGG----------GTTTAAGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAAT-ATTGATACAGTAATTGGTATGT---AAAAATAATACAATAA--------------------------------------------------TAATTCTGTTTAAATATT-AGGAAA--TTATCAGATTTGGCCTGTTAGGTTGTCCA--------------------------------------------------------TTTA-----------------------------------------------------------------------TATTGTATATA--------------------------------CSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........ATCCAATGGCCAGGTGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..CAACGAATCCAATGGCCAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
dm3
GCCAACGAGTCCAATGGCCAGGTGGAGGATAGTCCACCAGTTATACGCAAGTATGTG--ATT-ATGTGGTCAAAA-CCTAGTACAAGT----T-------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAGGCCAGAAATAATTGGGTAATGTTTTTATTATGAT---------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC---------------------CGTAC-ATTGAAACAGTAATTGGGATGTTACAAAAATAATACA-------------------------------------------------------TTTTCTATTTAAATATT-AGGATA--TTATCAGATTTGGCCTGTTAGGTTGTCCA--------------------------------------------------------TTTA-----------------------------------------------------------------------AATTGT-------------------------------------ASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............ATGGCCAGGTGGAGGATAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................AAGGCCAGAAATAATTGGGTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GGCCAGGTGGAGGATAGTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.......AGTCCAATGGCCAGGTGGAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GGCCAGGTGGAGGATAGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000
.....CGAGTCCAATGGCCAGGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000
......................TGGAGGATAGTCCACCAGTTATACGCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAGATTTGGCCTGTTAGGTTGT..................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............AATGGCCAGGTGGAGGATAGTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
........GTCCAATGGCCAGGTGGAGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
......GAGTCCAATGGCCAGGTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA--TTATCAGATTTGGCCTGT..........................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.............ATGGCCAGGTGGAGGATAGTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATATT-AGGATA--TTATCA......................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CCAATGGCCAGGTGGAGGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................AGGATAGTCCACCAGTTATACGCAAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TCCAATGGCCAGGTGGAGGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGGGATGTTACAAAA.....................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
...........CAATGGCCAGGTGGAGGATAGTCCAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AATGGCCAGGTGGAGGATAGTCCACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTGGGATGTTACAAAAA....................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TGGCCAGGTGGAGGATAGTCCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAACAGTAATTGGGATG.............................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GCCAACGAGACCAACGGCCAGGTGGAGGACAGTCCACCAGTTATCCGCAAGTATGTG--ATT-ATATGGTCAAAA-CCTAATACAAGT----T-------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAGGCCAGAAATAATTGGGTAATGTCTATATTGTA-T---------------------------------TCC--TAAACGG----------GATCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---GCAAAAATGA---------------------------------------------------TA----ATTTGTCTGTTGAAATATT-GGATAA--GTATCAGATTTGGCCTGTTAGGTTATCAA--------------------------------------------------------TTTA-----------------------------------------------------------------------TATTG---------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......AGACCAACGGCCAGGTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000
.........ACCAACGGCCAGGTGGAGGACAGTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
..........................GGACAGTCCACCAGTTATCCGCAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
droYak3
GCCAACGAGTCCAACGGCCAGGTGGAGGATAGTCCACCAGTTATCCGCAAGTATGTG--ATT-ATATGGTCAAAA-CCTAATTGAAGT----T-------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAGGCCGGAAATGAGAGGGTGATGTCTATAT--------------------------------------------TAAATGG----------GGTTTAGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAATGGG---------------------------------------------------------------------------------------------------CAAAAA---------AGAT----ATTTT---G----------------------------TTGGCCAGTTAGGTTGTCCA--------------------------------------------------------TTTA-----------------------------------------------------------------------TATTG---------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..CAACGAGTCCAACGGCCAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
droEug1
GCCAACGAGTCTAACGGTCAGGTGGAGGACAGTCCGCCAGTCATCCGCAAGTATGTA--ATC-ATATAGTCCAAAAATAA---TG--------------------------------------------------------------------------GGGCAAAA----------------------------AC--------T------------------AATTTTGA------------------------------------------------------------G-AGTTAAAATGGGGTTTTGT-AATGTTTTATTGATCTT--TAAATGG----------GTTT---TC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAACTATT----------TTGGAACTT---AAACAAAAT-TAATAG-------------------------------------------TGATATATCTTTTTGATTAAACAAT-AGAAAAGAATATAATA--------------TTGTACA--------------------------------------------------------TATA------------------------------------------------------------------------ATTAT-------------------------------------ASizeHit CountTotal NormTotal
No Reads
droBia1
GCCAACGAGTCCAACGGCCAGGTGGAGGATAGTCCGCCAGTTATTCGCAAGTATGTG--ATT-ATAATGTCTGAA-TCA---------------------------------------------------------------------------CTA--AGGAAAAG----------------------------AA--------T------------------ATCTTTGA------------------------------------------------------------G-ATT-AAAAAGGGACTATGT-ACTGTACA-TATATTTA--TTAAAGG----------GATG---CCCGAGAATGCCAATAGTTTTTATT---ATATTAAATACTAATGACATTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGAATAT---AAAAACAG-----TAATGATTT-----------------TGATAGTAAAACCTTTTTTAA-------TATTCTGATTAAATATT-TGAGAT--CCATCAGATTAAATTTGCTTATTTGTCAA--------------------------------------------------------TATA-----------------------------------------------------------------------TTTTGT-------------------------------------ASizeHit CountTotal NormTotal
No Reads
droTak1
GCCAACGAGTCCAACGGCCAGGTGGAGGATAGTCCACCGGTTATCCGCAAGTATGTATGGTT-AAAAGGTTAAAAGAGAA---TAGGTTATA--------------------------------------------------------------CTA--GGGGAAAA----------------------------TC--------T------------------ATATATCA------------------------------------------------------------G-ATTTTAATAGGGTT-CTTT-AAAGTTA--------------------GCT------------------------------TAATTTTTTTAATGGTATATA---A---TATTTATA---------AAC----------------------------------------------------------------------------------------------------------------------------CAATAGTTCTAAATAAT----------------------------------------------------AAATCCTATTTTAATGGATATTATAAAAAAAATTTAGATAATACATGTTATTATAATTAAAGATATAGGAAA--CCAACAGATTAGCCCTGTTTAGTCGTCAA--------------------------------------------------------TTTA-----------------------------------------------------------------------TGTTGTAA-----------------------------------ASizeHit CountTotal NormTotal
No Reads
droEle1
GCCAACGAGTCCAATGGCCAGGTGGAGGATAGTCCACCAGTTATCCGCAAGTATGTG--AAA-ATTTTATTCAAAAACAA---AAGGTTACA-TGGACCTAAGATACT-TT------------C----------------------------------------------------------------------------------------------------TTTTCTGA------------------------------------------------------------G-ATGGTAATAGGGAT-GGGTATA---T--------------------TATTATATTT------------------------------TTTCTAAAGAATGTA---A---AACTTGCA---------AAG----------------------------------------------------------------------------------------------------------------------------TAAATATTTAAAATATT-------------------------------TT-----------CAATT--AAGC-----------------TGATAAAAGAAGTTTTTTCATTATATATCATTCTGATAAATTATTAAGGGGA--CTATCAAATAAGGCCTGTCTATTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAATTTASizeHit CountTotal NormTotal
No Reads
droRho1
GCCAACGAGTCCAATGGCCAGGTGGAGGATAGCCCACCAGTTATACGCAAGTATGTC--AAT-ATTTCGTCTAAAAACAA---TAGATTATTC-------GAA-----------------------------------------------ATA-CTT--GGGCAAAA----------------------------TA--------TTTTGTTTGT-------TTTTTTTTTA------------------------------------------------------------G-ATTTTAAAAGGGGT-ATATTTA--------------------------------------------------------------------------------------------TTATTTATTGA----------A-------------------------------------------------------A------------------------------------------------------------------------ATATT-------------------------------TC-----------GAAAG--GTTT-----------------TGATAAAAATAATTTTTTTAATACATATGATTCTTATAAACAATTTAAGGGA--CTATCAAATCAGGGCTGTTAGTTTGTACA--------------------------------------------------------TATG------------------------------------------------------T----------------TAATAA-------------------------------------ASizeHit CountTotal NormTotal
No Reads
droFic1
GCCAACGAGTCCAACGGCCAGGTGGAGGATAGTCCACCAGTTATCCGCAAGTATGTG--GTT-GTAGTCTTTAAGAATAG---TAGGTTTCT-TTAGCCTAAA-----------------------------------------------ACC-CTT--TGCCAAAA----------------------------GC--------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATTTTTTTAG-----------------------A---------AACCTTAGGAAGATTGTGTCAAAGATATTTAATTTTTGAAGAACATGTTTAAAAACATAAATTATT-TTAAAGTACTGATTTGAAAATTGGTAAAACTGA---------TTTCAAATTTGTAA-------------------------------------------------------------------------------------AAT----------------------------------------------------GGGGA--TTATAATATCCGTCTTGT------------------------------------------------------------------------------------------------------------------------------AAATAT----------------------ATTGATAAAAACCCTCAG----TTAGATTTTASizeHit CountTotal NormTotal
No Reads
droKik1
GCCAACGAGTCCAACGGTCAGGTGGAGGATAGTCCGCCAGTTATACGCAAGTATGTT--ATA-AGATATCCAAAA-GCAAGAACGAGT----CGGGGTTTTAGCTAAT-TT------------A------------------------------A--TAAGGT--TCGGTGTA---------------GGCATAATATAGGGATATTGTTTTTATATGGATATTATGTTTTAAAAATTAAAAAAGGTAATATTTAAAGAAAGCGAAAAATAGTTATTTAAAGTTTATAAAATGTT---------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---------------------TGTAA-AT--------------------------------------------------------------------------------------------------------------------------------------------ATGCGTTTAAAGACGTTAAAAAGAGAGATTATTTGATAACTAAATTCAGTAAATTTAGATACAT-GA-GAAGCAGAAT-TTTTTTTAAATTAATATTAGTTTGTTACAAAGTTT----------------------TACTGT-------------------------------------ASizeHit CountTotal NormTotal
No Reads
droAna3
GCCAACGAATCCAACGGCCAGGTGGAAGATAGTCCTCCAGTTATACGCAAGTATGTT--AGA-ATATTTTAAAT--------------TGT--------------ACT-TT------------CAT---------------TTTTGGTAAACTAT--ATAGGA--TCTATAATATTTTATAAAT------------------------------------------------------------------------------------------------------------------------------------------------ATTTA-------AATGCGGTTA----------------------------------------------------------TTAGTTAATGA----------A-------------------------------------------------------T------------------------------------------------------------------------ATTTT-------------------------------TC-----------GAAAG---ATT------------TGT-----T-------------------------AATTTTTTAA-------------------------------------------------AAAGGATAAATAGAAAAACTG----------------------------------TA---------------------------------------------TTAGCTGTAACTAT----------------------ATGTATATAATTACACAA-----------TTASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............ACGGCCAGGTGGAAGATAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
............AACGGCCAGGTGGAAGATAGTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
..........................AGATAGTCCTCCAGTTATACGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.................CCAGGTGGAAGATAGTCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
droBip1
GCCAACGAATCCAACGGCCAGGTGGAAGATAGTCCTCCAGTTATACGCAAGTATGTG--GTA-AAC-TTTAAA-----------------------------------------------------------------------------ACC-CTTATAGGA--ACTA------------------------------------TTTTATTTATTGAGAATTTATTTTTTA------------------------------------------------------------A-AT--------------------------------ATCAA-------AATAAGGTTG----------------------------------------------------------TTAGTTAACGA----------A-------------------------------------------------------T------------------------------------------------------------------------ATTTT-------------------------------TC-----------AAAAA--TAAT------------TGT-----T-------------------------AATTTGTTTAAA-----AGATAA--ATATCAAAAGTGAACTATAATT------------------------------------------------------------------------------------------------------TTGGTATAAATTCTAGCTGTAACTAT----------------------ATGTATATAATTACACAT-----------TTASizeHit CountTotal NormTotal
No Reads
dp5
GCCAGCGAATCCAATGGCCAGGTGGAAGACAGTCCCCCTGTTATACGCAAGTATGTT--GAGTAGT---------------------------------------------------------------------------TTCTGGAAAAACAT--TGGGGA--AACATAACATTTTACAGAAAATG--------------------------------------------------------------------AC--------------GAGGGTGAGG----------------------------TGTAGG---C--------------------AATGAAATCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAATTAATGGGGATTCCAATAT---------AAAT----ATTTG---GGTGATA-----AG---------------------------------------------ATAAGGGTTTTA--CG----------------AATTATATTTGA----------------------------------------CTCGGGGGAGACAACAATTGTA----------------------TATACAGATATCTTGTGACGTGGTTTATTAGATTTTASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........CAATGGCCAGGTGGAAGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010000
..............................AGTCCCCCTGTTATACGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
...............GGCCAGGTGGAAGACAGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..CAGCGAATCCAATGGCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..CAGCGAATCCAATGGCCAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
...........................GACAGTCCCCCTGTTATACGCAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
droPer2
GCCAGCGAATCCAATGGCCAGGTGGAAGACAGTCCCCCTGTTATACGCAAGTATGTT--GAGTAGT---------------------------------------------------------------------------TTCTGGAAAAACAT--TGGGGA--AACATAACATTCTATAGGAAATG--------------------------------------------------------------------AC--------------GAGGGTGAGG----------------------------TGTAGG---C--------------------AACGAAATCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAATTAATGGGGATTCCAATAT---------AAAT----ATTTG---GGTGATA-----AG---------------------------------------------ATAAGGGTTAAA--CG----------------AATTATATTTGA----------------------------------------CTCGGGGGAGACAACAATTGTA----------------------TATACAGATATCTTGTGACGTGGTTTATAAGAATTTASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................................................................................................................................................GTGAGG----------------------------TGTAGG---C--------------------AACGAAATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002000002
....................................................................................................................................................................................................................................................................................GTGAGG----------------------------TGTAGG---C--------------------AACGAAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
droWil2
GCCAATGAATCCAATGGTCAGGTGGAAGATAGTCCACCTGTTATACGCAAGTACGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......GAATCCAATGGTCAGGTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200020
..CAATGAATCCAATGGTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
................................TCCACCTGTTATACGCAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.....TGAATCCAATGGTCAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
....ATGAATCCAATGGTCAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
........................GAAGATAGTCCACCTGTTATACGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000
..CAATGAATCCAATGGTCAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
............................ATAGTCCACCTGTTATACGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
droVir3
GCCAGCGAATCCAACGGTCAGGTGGAGGATAGTCCACCTGTCATACGCAAGTATGTT--ACC-AAC---CCAAAA-G----------TCGCA--------------CAAATTGAACAGAATTTTAGTATAGGGATATTAGGCCCTTGCAGCATAT--CGGTGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAC----------GGTG---CTGGTAAACAGCAATTTTTTTTTTTTTTAAGATATATACAAA---TATTTATAAGTATGTAA----------G-------------------------------------------------------G---------------T-CACTTCAGCAAGCCCGGTAATCGTTCCACTAGAGTC---TCTTTAAATAAGTAGGATATCTCCGATCTAT--------------------------------------------------------------TGA---------------------------------------------------TAACCAAAGCTAGTTCAGTATCTCGTTTG--------------------------------------------------------TACA-----------------------------------------------------------------------TATTAG-------------------------------------CSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..CAGCGAATCCAACGGTCAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000010000000000000000000000000000000000000000000000000000000
...............................GTCCACCTGTCATACGCAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................TTTTAAGATATATACAAA---T..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000010000000000000000000000000000000000000000
.......................GGAGGATAGTCCACCTGTCATACGCAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000100000000000000000000000000000000000000000000000000000000000
....GCGAATCCAACGGTCAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA---------------------------------------------------TAACCAAAGCTAGTTCAGT.........................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
GCTAACGAATCCAATGGCCAGGTGGAGGATAGTCCTCCCGTCATACGCAAGTATGTG--TTT-GCAAGCCCAAAA-AGAA---TAGATA-TATATGTGTATAGCATAT-ATATAAT---------------GG--ATTAGGCACTTGTAG---------------------------------------AC-----------------------------------------------------------------AT--------------------------------------------------------------------------------------------GGTG---CAGGTCAAGAGAGAATT----------------------------------------------------------------------------------------------------------------GTATAGGAGAGAAAGG-CGAGTGAGAAAGCCTT---------TTTAAAGAGTGTGA-------------------------------------------------------------------------------------GAA----------------------------------------------------TG--------------TGAATTGAAAATCTTGTTTG--------------------------------------------------------TATATATGAGCTAGGCTATTTATTATAATTATTA----------------------TGTATCTATATCTATATCTATAT-------------------------------------CTASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGGAGAGAAAGG-CGAGA.................................................................................................................................................................................................................................................................................................................................................................................................2012.002200000
..................................................................................................................AT---------------GG--ATTAGGCACTTGTAG---------------------------------------A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.CTAACGAATCCAATGGCCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
droGri2
GCCAGCGAATCCAACGGACAGGTGGATGATAGTCCACCAGTTATACGCAAGTATGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 11:10 PM