ID:

dsi_14833

 Coordinate:

3l:14398879-14399028 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [3l_14399029_14399458_-]; exon [3l_14399029_14399458_-]; five_prime_UTR [3l_14399029_14399458_-]; CDS [3l_14399029_14399220_-]; intron [3l_14396669_14399028_-]; intron [3l_14396669_14399028_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ACAAGATAGTCCTGTGCGCCGCCTCCCCCTTTCTGCTGGACTTGCTAAAGGTGAGTGCTCGAATCGGAAACACTGCCTAAAACACCTTTCAATAAGAGAGCTTCTACATAACCTCAAACGTGGCGTACAGTTTGTAAACAGAGAAATCCAATCGCAGAAATAGGTTAATGTTTGGAGCGCAGAGAAACTGACACTCGCACGCAAATGCATACATATGTATAAATAAGGCAGATTTACGCTCCGCTCCAAA
*********************************************************************************************....((..((((.........(((((.((.....))))))).......)))).))........********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 M023
head
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
.............................................................................................AAGAGAGCTTCTACATAACCT........................................................................................................................................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................CTCGAATCGGGAACACTGCCT............................................................................................................................................................................ 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0
.......................................................................................................................................AAACAGAGAAATCCAATCGCA.............................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GAGAAACTGACACTCGCACGCA............................................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0
..............................TTCTGCTGGACTTGCTAAAGG....................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................AATGTTTGGAGCGCAGAGA................................................................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.........................................................CTCGAATCGGGAACACTGCCC............................................................................................................................................................................ 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0
...............................TCTGCTGGACTTGCTAAAGGTG..................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0
.................................TGCTGGACTTGCTAAAGGTGAG................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...........................CCTATCTGCTGGAATTGC............................................................................................................................................................................................................. 18 2 14 0.36 5 0 0 5 0 0 0 0 0 0
.........................................................................................................................................................GCTGAAATAGGTTAATGG............................................................................... 18 2 8 0.13 1 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................TAATGTTTGTAGTGCAGAAAA................................................................ 21 3 9 0.11 1 0 0 0 0 0 0 0 0 1
...AGATAGTCGGGTGCCCCGC.................................................................................................................................................................................................................................... 19 3 14 0.07 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TTTGGAGCTCACAGAAACC............................................................. 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

TGTTCTATCAGGACACGCGGCGGAGGGGGAAAGACGACCTGAACGATTTCCACTCACGAGCTTAGCCTTTGTGACGGATTTTGTGGAAAGTTATTCTCTCGAAGATGTATTGGAGTTTGCACCGCATGTCAAACATTTGTCTCTTTAGGTTAGCGTCTTTATCCAATTACAAACCTCGCGTCTCTTTGACTGTGAGCGTGCGTTTACGTATGTATACATATTTATTCCGTCTAAATGCGAGGCGAGGTTT
**********************************************************************************************....((..((((.........(((((.((.....))))))).......)))).))........********************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 M053
female body
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 M024
male body
......................................................CACGAGCTTAGCCTTTGTGAC............................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
....................CGGAGGGGGAAAGACGACCTGA................................................................................................................................................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................AGCTTAGCCTTTGTGACGGAT........................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................TTGACTGTGAGCGTGCGTTTA............................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................GTCAAACATTTGTCTCTTTAGGTTA.................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................GAAAGTTATTCTCTCGAAGATGTATTG.......................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..........................................................................CGGATTTTGTGGAAAGTTATT........................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................TCGAAGATGTATTGGAGTTTG................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................AAACATTTGTCTCTTTAGGTT................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................TGACTGTGAGCGTGCGTTTA............................................ 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................GAAAGTTATTCTCTCGAAGAT................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................CCAATTACAAACCTCGCGTCT................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................TTCTCTCGGAGATGTATTGGAGT...................................................................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................ACGTCTAAATGCGAGGCGAGGTTT 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................GGCGGAGGGGGAAAGACG...................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................TTGTCGAAAGTTTTTCTCGCGA.................................................................................................................................................... 22 3 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0
..........................................................................CGGCTTTGGTGGAAAGTT.............................................................................................................................................................. 18 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................................................................................................TGTATACATATTTATTC....................... 17 0 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................TCTTTAGGTTACCGTCGTT.......................................................................................... 19 2 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TCCGACTCGATGCGAGGC....... 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.......TCAGGACACGCGGGTG................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
...........................GGAAAGGCGAGCTGAAC.............................................................................................................................................................................................................. 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:14398829-14399078 - dsi_14833 ACAAGATAGTCCTGTGCGCCGCCTCCCCCTTTCTGCTGGACTTGCTAAAGGTGAGTG-----------------------CTCGAATCGGAAA---------------------------------------------CACT-G------------------C----CTAAAAC-A------CCTTTCAATA-AGA------------------------------------------------------------------------GAGCTT-----------------CTACATAACCTCAAACGTG---------------------------------------------------GCG-------TACAGTTTGTAAACAGAGAAATCCA-ATCGCAG-----------AAATAGGTTAATGTT-----------TG-----GAGCGC------------------------------------------------------AGAGAAACTGACA--CTCGCACGCAA--ATGCATA--CATATGTATA----------------------------AATAAGGCAGA---TTTACG------------------CTCCGCTCCA------A-A---
droSec2 scaffold_0:6870789-6871038 - ACAAGATAGTCCTGTGCGCCGCCTCCCCCTTTCTGCTGGACTTGCTAAAGGTGAGTG-----------------------CTCGATTCGGAAA---------------------------------------------CACT-G------------------C----CTAAAAC-A------CCTTTCAATA-AGA------------------------------------------------------------------------GAGCTT-----------------CTACATAACCTCAAACGTG---------------------------------------------------GCG-------TACAGTTTGTAAACAGAGAAATCCA-ATCGCAG-----------AAATAGGTTAATGTT-----------TG-----GAGCGC------------------------------------------------------AGAGAAACTGACA--CTCGCACGCAA--ATGCATA--CATATGTATA----------------------------AATAACGCAGA---TTTACG------------------CTCCGCTCCA------A-A---
dm3 chr3L:14749804-14750053 - ACAAGATAGTCCTGTGCGCCGCCTCCCCCTTTCTGCTGGACTTGCTAAAGGTAAGTG-----------------------CTCGGTTCGGAAA---------------------------------------------CACT-G------------------C----CTAAAAC-A------CCTTTCAATA-AGA------------------------------------------------------------------------GAGCTT-----------------GTACATAACCTCAAACGTT---------------------------------------------------TCG-------TACAGTTTGTAAACAGAGAAATCCA-ATCGCAG-----------AAATAGGTTAATGTT-----------TG-----GAGCGC------------------------------------------------------AGAGAAACTGACA--CTCGCACGCAA--ATGCATA--CATATGTATA----------------------------AATAACGCAGA---TTTACG------------------CTCCGCTCCA------A-A---
droEre2 scaffold_4784:14716346-14716595 - ACAAGATAGTCCTCTGCGCCGCCTCCCCCTTTCTGCTGGACTTGCTAAAGGTGAGTG-----------------------CTCGGTTCGGAAA---------------------------------------------CACT-G------------------C----CCAAAAC-A------CCTTTCAATA-AGA------------------------------------------------------------------------GAGCTT-----------------GTACATAACCTCAAACGTG---------------------------------------------------GCG-------TACAGTTTGTAAACAGAGAAATCCA-ATCGCAG-----------AAATAGGTTAATGTG-----------TG-----GAGCGC------------------------------------------------------AGAGAAACTGACA--CTCACACGCAA--ATACATA--CATATGTATA----------------------------AATAACGCAGA---TTCACG------------------CTCCGCTCCA------A-A---
droYak3 3L:14837126-14837375 - ACAAGATTGTCCTGTGCGCCGCCTCCCCCTTTCTGCTGGACTTGCTAAAGGTGAGTG-----------------------CTCGGTTCGGAAA---------------------------------------------AAGT-G------------------C----CCAGAAC-A------CCTTTCAATA-AGA------------------------------------------------------------------------GAGCTT-----------------GTACATAACCTCAAACGTG---------------------------------------------------GCG-------TACAGTTTGTAAACAGAGAAATCCA-ATCGCAG-----------AAATAGGTTAATGTG-----------TG-----GAGCGC------------------------------------------------------AGAGAATGAGACA--GTCACACGCAA--ATACATA--CATATGTATA----------------------------AATAACGCAGA---TTCACG------------------CTCCGCTCCA------A-A---
droEug1 scf7180000409456:999321-999572 - ACAAGATAGTCCTATGCGCCGCCTCCCCTTTTCTGCTGGACTTGCTCAAGGTAAGTG-----------------------TTAAA----------CTTTC-----------AAATAA-AT----GTCACTGTAAAAA-TACT-A------------------T----T------T---------TTAAAAAA-AGA------------------------------------------------------------------------GAGTTA----A---CA----CC-TCTCATAACCTCAAACGTG---------------------------------------------------GCG-------TACAGTTTGTAAACAGAGAAATCCA-ATCGCAG-----------AAATAGGTTAACGTG-----------TG-----GAGCGC------------------------------------------------------AGAGAAACTTACACA--CACAATCAA--AT---------TA----------------------------------TATATCGCAGA---TTTACG------------------CTCCGCTCCA------A-A---
droBia1 scf7180000302428:5133164-5133423 + ACAAGATAGTCCTGTGCGCCGCCTCCCCCTTTCTACTGGACTTGCTCAAGGTGAGTG-----------------------CCCCA--------------------------AATTAA-----------CAGTATTAG-CACT-A------------------C----TTAAGCC-GCCCCCCCCTTTGGAAA-AGA------------------------------------------------------------------------GAGTTC--T-GTGGCC----CC-GCACATAACCTCAAACGTG---------------------------------------------------GCG-------TACAGTTTGTAAACAGAGAAATCCA-ATCGCAG-----------AAATAGGTTAATATG-----------TG-----GAGCGC------------------------------------------------------AGAGAAACTTACACA------CACAA--AT--ATA--CACATGTA----------------------------------TCGCAGA---TTTACG------------------CTCCGCTCCA------A-A---
droTak1 scf7180000415135:461171-461418 - ACAAGATAGTTCTGTGCGCCGCCTCCCCCTTTCTGCTGGACTTGCTCAAGGTGAGTG-----------------------GTTTA--------------------------AA-AGAAA-------------------AACTTA------------------CTTAGTTAAAGC-C------CCCTCTGAAA-AGA------------------------------------------------------------------------GAGTTT----GTACAC----CC-CTACATAACCTCAAACGTG---------------------------------------------------GCG-------TACAGTTTGTAAACAGAGAAATCCA-ATCGCAG-----------AAATAGGTTAATATG-----------TG-----GAGCGC------------------------------------------------------AGAGAAACTTACACA--C----------------A--CAAATATAAC----------------------------AACATCGCAGA---TTTGCG------------------CTCCGCTCCA------A-A---
droEle1 scf7180000491199:1921525-1921745 - ACAAGATTGTCCTATGCGCCGCCTCCCCCTTTCTACTGGATTTGCTCAAGGTAAGTT--------------------------------------------------GCTAGAAAGCGAT-------------------------------------------------ACAAA-A------CCTTATAAAA-AGA------------------------------------------------------------------------GAGTTT----A---------AG-GCACATAACCTCAAACGTG---------------------------------------------------GCG-------TACAGTTTGTAAACAGAGAAATCCC-ATCGCAG-----------AAATAGGTTAATGTG-----------TG-----GAGCGC------------------------------------------------------AGAGACACTTACAC------------------------ATAGGTA----------------------------------TCGCAAA---ATTACG------------------CTCCGCTCCA------A-A---
droRho1 scf7180000777233:56647-56871 + ACAAGATAGTCCTGTGCGCCGCCTCCCCCTTTCTACTGGATTTGCTCAAGGTGAGTT--------------------------------------------------GCTAAAAAAAAAG-----------CATAAAAATCT-A----------------------------------------CTCTAAAA-AGA------------------------------------------------------------------------GAGTTT----A---------TC-GCACATAACCTTAAACGTG---------------------------------------------------GCG-------TACAGTTTGTAAACAGAGAAATCCA-ATCGCAG-----------AAATAGGTTAATGTG-----------GG-----GAGCGC------------------------------------------------------AGAGAAACCTATACA------------------------------TA----------------------------CATAACGCAGA---TTTACG------------------CTCCGCTCCA------A-A---
droFic1 scf7180000453807:205709-205935 - ACAAGATAGTCCTATGCGCCGCCTCCCCCTTTCTGCTGGACTTGCTCAAGGTAAGTG-----------------------G--------GAAA---------------------------------------------AAAC-G------------------T----TTAAAGC-A------CC--ACAAAC-AGA------------------------------------------------------------------------GAGTTA----A---------CC-GCACATAACCTCAAACGTG---------------------------------------------------GCG-------TACAGTTTGTAAACAGAGAAATCCA-ATCGCAG-----------AAATAGGTTAATGTG-----------TG-----GAGCGC------------------------------------------------------AGAGAAACCTACACA--CACA--GAA------ATA----------------------------------------TATCTGCCAGA---TTTACG------------------CTCCGCTCCA------A-A---
droKik1 scf7180000302383:897034-897283 - ACAAGATAGTCCTCTGTGCCGCCTCCCCCTTCCTTCTGGACTTGCTCAAGGTGAGTG-----------------------TAAGA-------AGTGCATCG-----TGCCAAAAGGTG---------------------------------------------------------------------AAAAA-AGA------------------------------------------------------------------------GAGTGGCGCTG---------TC-GTGCATAACCTCAAACGTG---------------------------------------------------GCGTACACTGTACAGTTTGTAAACAGAGAAATCCA-ATGGCAG-----------AAATAGGTTAATGTG-----------TG-----GAGCGC------------------------------------------------------AGAGAAACTTGCACACTCACACTC------GCATA--CGAA----------------------------------TATCTCGGAGA---TTTACG------------------CTCCGCTCCA------A-A---
droAna3 scaffold_13337:4352539-4352885 + ACAAGATAGTCCTCTGTGCCGCCTCGCCATTCCTACTGGACTTGCTGAAGGTGAGTA-----------------------AGAAT-------GGTGCACTGAGAAAAACTAAAAATATAT------TTCTGG------------GATAAGTAAAATAAGTTTC----TGAATAC-A------TC--ACAGAGGAGAAACTGCATAGTCGTGCTTGCATTGTGGCAGAAATATCATTAATTTTCTCTCAGTGTTTAGTGACGTT--TTGGAGCTC--TTGT--------CC-GTACCTAACCTCAAACGTG---------------------------------------------------GCG-------TACAGTTTGTAAACAGAGAAATCCA-ATCGCAG-----------AAATAGGTTAATG-------------TG-----GAGCGC------------------------------------------------------AGAGAAACTTGCA--------------------TA--CACATGTCCAA---------------------------CATCTCGGAGA---TTGGCG------------------CTCCGCTCCA------A-A---
droBip1 scf7180000395450:481254-481546 + ACAAGATTGTCCTCTGTGCCGCGTCGCCGTTCCTACTGGACTTGCTGAAGGTGAGTAATGATTCCATCTTATATAAGTTCCTCGGTTAGGAA----------------------------------------------CACT-A------------------C------------A------CC---------------TGTACTGTCG------------------AATACTATAAAATTTCTCTTAGTGTATGGTGACGTTTTTTGGAGCTC--TGCT--------CCAAAACCTAACCTCAAACGTG---------------------------------------------------GCG-------TACAGTTTGTAAACAGAGAAATCCA-ATCGCAG-----------AAATAGGTTAATG-------------TG-----GAGCGC------------------------------------------------------AGAGAAACTTGCA--------------------TA--CAT--GTCCAA---------------------------CATCTCGGAGA---TTGGCG------------------CTCCGCTCCA------A-A---
dp5 XR_group6:999196-999517 + dps_2962 ACAAAATAGTGCTCTGTGCCGCCTCGCCGTTCCTCCTGGATTTGCTAAAGGTAAGCG-----------------------AGAGT-------AGAGTGTGGAGA-GAGCTAGAGAGAGAGAGAG----------------------------------------------------------------AGAG-AGA------------------------------------------------------------------------GAGTTG--T-GTGGAGTCGGGG-CGACATAACCACAAACGTGGCCAGTCTGAGATTTT--------------------GACTC----------GCG-------TACAGTTTGTAAACAGAGAAACCC--ATCGCAA-----------AAATAGGTTAATGTT-----------TG-----GAGCGC---------------------------------GGCTCCCACAAAAGCAT--TCAGAGAAACTTACT----CACACGCACACATGCACA----CACTTACA----------------------------GAT--GGCAGAGCATTCGCTCTTCCCTGCTCTGCTCTTCTCTGCTCCA------A-A---
droPer2 scaffold_12:1677936-1678257 + ACAAAATAGTGCTCTGTGCCGCCTCGCCGTTCCTCCTGGATTTGCTAAAGGTAAGCG-----------------------AGAGT-------AGAGTGTGGAGA-GAGCTAGAGAGAGAGAGAG----------------------------------------------------------------AGAG-AGA------------------------------------------------------------------------GAGTTG--T-GTGGAGTCGGGG-CGACATAACCACAAACGTGGCCAGTCTGAGATTTT--------------------GACTC----------GCG-------TACAGTTTGTAAACAGAGAAACCC--ATCGCAA-----------AAATAGGTTAATGTT-----------TG-----GAGCGC---------------------------------GGCTCCCACAAAAGCAT--TCAGAGAAACTTACT----CACACGCACACATGCACA----CACTTACA----------------------------GAT--GGCAGAGCATTCGCTCTTCCCTGCTCTGCTCTTCTCTGCTCCA------A-A---
droWil2 scf2_1100000004949:1094188-1094441 + ATAAAATTGTCCTATGTGCCGCCTCACCGTTTTTATTGGATTTGCTTAAGGTGAGTG-----------------------TGTTC--------------------------AAATAA-T-------TTCTGTATAGT-TGCT-A------------------T----T------C---------T------------------------------------------------------------------------------------AGCTA--ATG---------TA-TAACCTAACCTCAAAAGTT--------AAGTTGCT--------------------TACTCGCGTAGGCAAGCG-------TACAGTTTGTAAACAGAGAA------------------------AAATAGGTTAGTGTTATTTTTGTTGCTG-----GAGCA------------------------------------------------------------AAC-TACA--------TGT----ATGCACATACATTTAAATG----------------------------AGAAACCCTCA---ATAA--------------------TTCCACTCTT------GTG---
droVir3 scaffold_13049:16846009-16846190 - ACAAAATCGTGCTCTGTGCGGCTTCTCCATTTCTATTGGACTTGCTAAAGGTGAGTG-----------------------CGCGG------------------------------------------------------------------------------------------------------------CGA------------------------------------------------------------------------GAGCTT--TTG---------TC-AAACATAACCTCAACAAC-------G-----------TTCTTCTGGCATGTGTTTTGTGC----------GCG-------TACAGTTTGTAAACAGAGAAATCAAAGTCGTCGTTCGACTTGCCAAATAGGTTAATATG-----------TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6680:19845395-19845741 + ACAAAATCGTGCTCTGTGCGGCTTCTCCATTTCTGTTGGACCTGCTAAAGGTGAGTA-----------------------CGCGG------------------------------------------------------------------------------------------------------------CGA------------------------------------------------------------------------GAGCTT--T-T---------CT-AAACATAACCTCAACAGCGAC-GACG-----------TTTCGTTGGCATGTGTTTT-TGC----------GCG-------TACAGTTTGTAAACAGAGAAATCAAAATCGTCGTCCGACTTGCCAAATAGGTTATTATG-----------TGTTTGTGCGTGCGTGCGAGTGTGTTTGAATTTGTGAAACGGTTTTGACTCCCCAACA--CAATGTGAATGTAAGCTACATA----------C--ATGCATA--CATTAGTATT-TGAGTGCTCGTGTATATGTGTGAGTTAAGAAATGTGCA---TTCGCG------------------CTCTGCTCCTGGCTTAA-ACAC
droGri2 scaffold_15110:16261062-16261258 + ACAAAATTGTGCTCTGTGCGGCATCGCCATTTCTGTTGGACCTGCTAAAGGTGAGTA--------------------------------------------------------------------------------------------------------------------------------------A-AGA------------------------------------------------------------------------GAGCTT--T-TTTTCATTTTTC-ACACATAACCTCAACCAGCAATAATTTTTTTTTTTTTTGCTGCTGGCATGTGT----TGT----------GTG-------TACAGTTTGTAAACAGAGAAATCAACATCGTTGTCCGACTTGCCAAATAGGTTAATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ACAAGATAGTCCTGTGCGCCGCCTCCCCCTTTCTGCTGGACTTGCTAAAGGTGAGTG-----------------------CTCGAATCGGAAA---------------------------------------------CACT-G------------------C----CTAAAAC-A------CCTTTCAATA-AGA------------------------------------------------------------------------GAGCTT-----------------CTACATAACCTCAAACGTG---------------------------------------------------GCG-------TACAGTTTGTAAACAGAGAAATCCA-ATCGCAG-----------AAATAGGTTAATGTT-----------TG-----GAGCGC------------------------------------------------------AGAGAAACTGACA--CTCGCACGCAA--ATGCATA--CATATGTATA----------------------------AATAAGGCAGA---TTTACG------------------CTCCGCTCCA------A-A---SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................A-AGA------------------------------------------------------------------------GAGCTT-----------------CTACATAACCT.....................................................................................................................................................................................................................................................................................................................................................2112.00200000020000000000
.............................................................................................................................................................................................................................................................................................................................................................................................AAACAGAGAAATCCA-ATCGCA................................................................................................................................................................................................................................................2111.00100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAACTGACA--CTCGCACGCA..............................................................................................................2211.00100000000000010000
..............................TTCTGCTGGACTTGCTAAAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000001000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTT-----------TG-----GAGCGC------------------------------------------------------AGAGA..................................................................................................................................1911.00100000100000000000
...............................TCTGCTGGACTTGCTAAAGGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000001000
.................................TGCTGGACTTGCTAAAGGTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
droSec2
ACAAGATAGTCCTGTGCGCCGCCTCCCCCTTTCTGCTGGACTTGCTAAAGGTGAGTG-----------------------CTCGATTCGGAAA---------------------------------------------CACT-G------------------C----CTAAAAC-A------CCTTTCAATA-AGA------------------------------------------------------------------------GAGCTT-----------------CTACATAACCTCAAACGTG---------------------------------------------------GCG-------TACAGTTTGTAAACAGAGAAATCCA-ATCGCAG-----------AAATAGGTTAATGTT-----------TG-----GAGCGC------------------------------------------------------AGAGAAACTGACA--CTCGCACGCAA--ATGCATA--CATATGTATA----------------------------AATAACGCAGA---TTTACG------------------CTCCGCTCCA------A-A---SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................TCCCCCTTTCTGCTGGACTTGCTAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGA---TTTACG------------------CTCCGCTCC.............2111.0010001
dm3
ACAAGATAGTCCTGTGCGCCGCCTCCCCCTTTCTGCTGGACTTGCTAAAGGTAAGTG-----------------------CTCGGTTCGGAAA---------------------------------------------CACT-G------------------C----CTAAAAC-A------CCTTTCAATA-AGA------------------------------------------------------------------------GAGCTT-----------------GTACATAACCTCAAACGTT---------------------------------------------------TCG-------TACAGTTTGTAAACAGAGAAATCCA-ATCGCAG-----------AAATAGGTTAATGTT-----------TG-----GAGCGC------------------------------------------------------AGAGAAACTGACA--CTCGCACGCAA--ATGCATA--CATATGTATA----------------------------AATAACGCAGA---TTTACG------------------CTCCGCTCCA------A-A---SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................CTGCTGGACTTGCTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1817.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000130000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TT-----------TG-----GAGCGC------------------------------------------------------AGAGAAACTGA............................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
........................CCCCCTTTCTGCTGGACTTGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2215.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005
.....................................................................................................................................................................................................................................................................................................ACATAACCTCAAACGTT---------------------------------------------------TCG-------T...............................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................TTCTGCTGGACTTGCTAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000100000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACGCAGA---TTTACG------------------CTCCG.................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000
......................CTCCCCCTTTCTGCTGGACTTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CCCTTTCTGCTGGACTTGCTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...............................TCTGCTGGACTTGCTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................GCCGCCTCCCCCTTTCTGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTAAGTG-----------------------CTCGGTTCGGAAA---------------------------------------------C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
ACAAGATAGTCCTGTGCGCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................CCCCCTTTCTGCTGGACTTGCTAAAGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................AGCTT-----------------GTACATAACCTCAAACGTT---------------------------------------------------TCG-------T...............................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
......TAGTCCTGTGCGCCGCCTCCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..................CCGCCTCCCCCTTTCTGCTGGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TCCCCCTTTCTGCTGGACTTGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGACA--CTCGCACGCAA--ATGCA......................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TAGTCCTGTGCGCCGCCTCCCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-----GAGCGC------------------------------------------------------AGAGAAACTGAC...........................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............GCGCCGCCTCCCCCTTTCTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................CGGTTCGGAAA---------------------------------------------CACT-G------------------C----CTAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TTCTGCTGGACTTGCTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................AACGTT---------------------------------------------------TCG-------TACAGTTTGTAAAC..................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CGCCTCCCCCTTTCTGCTGGACTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGGTTAATGTT-----------TG-----GAGCGC------------------------------------------------------.......................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGGTTAATGTT-----------TG-----GAGCG..............................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACGCAA--ATGCATA--CATATG............................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..................CCGCCTCCCCCTTTCTGCTGGACTTGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...AGATAGTCCTGTGCGCCGCCTCCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTT-----------TG-----GAGCGC------------------------------------------------------AGAGAAACC..............................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................CGCAG-----------AAATAGGTTAATGTT-----------TG-----GAG................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................GTG-----------------------CTCGGTTCGGAAA---------------------------------------------CACT-G------------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CTGCTGGACTTGCTAAAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTT-----------TG-----GAGCGC------------------------------------------------------AGAGAAA................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....ATAGTCCTGTGCGCCGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
.....................................................................................TTCGGAAA---------------------------------------------CACT-G------------------C----CTAAAAC-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
ACAAGATAGTCCTGTGCGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................GGTAAGTG-----------------------CTCGGTTCGGAAA---------------------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................TGCTAAAGGTAAGTG-----------------------CTCGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................CTCCCCCTTTCTGCTGGACTTGCTAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................ACAGTTTGTAAACAGAGAAA...........................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
....................GCCTCCCCCTTTCTGCTGGACTTGCTAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TTCTGCTGGACTTGCTATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTAAGTG-----------------------CTCGGTTCGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
......TAGTCCTGTGCGCCGCCTCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TGTGCGCCGCCTCCCCCTTTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...........................CCTTTCTGCTGGACTTGCTAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TAAGTG-----------------------CTCGGTTCGGAAA---------------------------------------------CA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................CCTCCCCCTTTCTGCTGGACTTGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......AGTCCTGTGCGCCGCCTCCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................CCTCAAACGTT---------------------------------------------------TCG-------TACAGT..........................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CTCCCCCTTTCTGCTGGACTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ACAAGATAGTCCTCTGCGCCGCCTCCCCCTTTCTGCTGGACTTGCTAAAGGTGAGTG-----------------------CTCGGTTCGGAAA---------------------------------------------CACT-G------------------C----CCAAAAC-A------CCTTTCAATA-AGA------------------------------------------------------------------------GAGCTT-----------------GTACATAACCTCAAACGTG---------------------------------------------------GCG-------TACAGTTTGTAAACAGAGAAATCCA-ATCGCAG-----------AAATAGGTTAATGTG-----------TG-----GAGCGC------------------------------------------------------AGAGAAACTGACA--CTCACACGCAA--ATACATA--CATATGTATA----------------------------AATAACGCAGA---TTCACG------------------CTCCGCTCCA------A-A---SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...AGATAGTCCTCTGCGCCGCCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
......................CTCCCCCTTTCTGCTGGACTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
.......................TCCCCCTTTCTGCTGGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
droYak3
ACAAGATTGTCCTGTGCGCCGCCTCCCCCTTTCTGCTGGACTTGCTAAAGGTGAGTG-----------------------CTCGGTTCGGAAA---------------------------------------------AAGT-G------------------C----CCAGAAC-A------CCTTTCAATA-AGA------------------------------------------------------------------------GAGCTT-----------------GTACATAACCTCAAACGTG---------------------------------------------------GCG-------TACAGTTTGTAAACAGAGAAATCCA-ATCGCAG-----------AAATAGGTTAATGTG-----------TG-----GAGCGC------------------------------------------------------AGAGAATGAGACA--GTCACACGCAA--ATACATA--CATATGTATA----------------------------AATAACGCAGA---TTCACG------------------CTCCGCTCCA------A-A---SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................CTCCCCCTTTCTGCTGGACTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000
................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGGTTAATGTG-----------TG-----GAG................................................................................................................................................................................................1911.00100100000000
droEug1
ACAAGATAGTCCTATGCGCCGCCTCCCCTTTTCTGCTGGACTTGCTCAAGGTAAGTG-----------------------TTAAA----------CTTTC-----------AAATAA-AT----GTCACTGTAAAAA-TACT-A------------------T----T------T---------TTAAAAAA-AGA------------------------------------------------------------------------GAGTTA----A---CA----CC-TCTCATAACCTCAAACGTG---------------------------------------------------GCG-------TACAGTTTGTAAACAGAGAAATCCA-ATCGCAG-----------AAATAGGTTAACGTG-----------TG-----GAGCGC------------------------------------------------------AGAGAAACTTACACA--CACAATCAA--AT---------TA----------------------------------TATATCGCAGA---TTTACG------------------CTCCGCTCCA------A-A---SizeHit CountTotal NormTotal
No Reads
droBia1
ACAAGATAGTCCTGTGCGCCGCCTCCCCCTTTCTACTGGACTTGCTCAAGGTGAGTG-----------------------CCCCA--------------------------AATTAA-----------CAGTATTAG-CACT-A------------------C----TTAAGCC-GCCCCCCCCTTTGGAAA-AGA------------------------------------------------------------------------GAGTTC--T-GTGGCC----CC-GCACATAACCTCAAACGTG---------------------------------------------------GCG-------TACAGTTTGTAAACAGAGAAATCCA-ATCGCAG-----------AAATAGGTTAATATG-----------TG-----GAGCGC------------------------------------------------------AGAGAAACTTACACA------CACAA--AT--ATA--CACATGTA----------------------------------TCGCAGA---TTTACG------------------CTCCGCTCCA------A-A---SizeHit CountTotal NormTotal
No Reads
droTak1
ACAAGATAGTTCTGTGCGCCGCCTCCCCCTTTCTGCTGGACTTGCTCAAGGTGAGTG-----------------------GTTTA--------------------------AA-AGAAA-------------------AACTTA------------------CTTAGTTAAAGC-C------CCCTCTGAAA-AGA------------------------------------------------------------------------GAGTTT----GTACAC----CC-CTACATAACCTCAAACGTG---------------------------------------------------GCG-------TACAGTTTGTAAACAGAGAAATCCA-ATCGCAG-----------AAATAGGTTAATATG-----------TG-----GAGCGC------------------------------------------------------AGAGAAACTTACACA--C----------------A--CAAATATAAC----------------------------AACATCGCAGA---TTTGCG------------------CTCCGCTCCA------A-A---SizeHit CountTotal NormTotal
No Reads
droEle1
ACAAGATTGTCCTATGCGCCGCCTCCCCCTTTCTACTGGATTTGCTCAAGGTAAGTT--------------------------------------------------GCTAGAAAGCGAT-------------------------------------------------ACAAA-A------CCTTATAAAA-AGA------------------------------------------------------------------------GAGTTT----A---------AG-GCACATAACCTCAAACGTG---------------------------------------------------GCG-------TACAGTTTGTAAACAGAGAAATCCC-ATCGCAG-----------AAATAGGTTAATGTG-----------TG-----GAGCGC------------------------------------------------------AGAGACACTTACAC------------------------ATAGGTA----------------------------------TCGCAAA---ATTACG------------------CTCCGCTCCA------A-A---SizeHit CountTotal NormTotal
No Reads
droRho1
ACAAGATAGTCCTGTGCGCCGCCTCCCCCTTTCTACTGGATTTGCTCAAGGTGAGTT--------------------------------------------------GCTAAAAAAAAAG-----------CATAAAAATCT-A----------------------------------------CTCTAAAA-AGA------------------------------------------------------------------------GAGTTT----A---------TC-GCACATAACCTTAAACGTG---------------------------------------------------GCG-------TACAGTTTGTAAACAGAGAAATCCA-ATCGCAG-----------AAATAGGTTAATGTG-----------GG-----GAGCGC------------------------------------------------------AGAGAAACCTATACA------------------------------TA----------------------------CATAACGCAGA---TTTACG------------------CTCCGCTCCA------A-A---SizeHit CountTotal NormTotal
No Reads
droFic1
ACAAGATAGTCCTATGCGCCGCCTCCCCCTTTCTGCTGGACTTGCTCAAGGTAAGTG-----------------------G--------GAAA---------------------------------------------AAAC-G------------------T----TTAAAGC-A------CC--ACAAAC-AGA------------------------------------------------------------------------GAGTTA----A---------CC-GCACATAACCTCAAACGTG---------------------------------------------------GCG-------TACAGTTTGTAAACAGAGAAATCCA-ATCGCAG-----------AAATAGGTTAATGTG-----------TG-----GAGCGC------------------------------------------------------AGAGAAACCTACACA--CACA--GAA------ATA----------------------------------------TATCTGCCAGA---TTTACG------------------CTCCGCTCCA------A-A---SizeHit CountTotal NormTotal
No Reads
droKik1
ACAAGATAGTCCTCTGTGCCGCCTCCCCCTTCCTTCTGGACTTGCTCAAGGTGAGTG-----------------------TAAGA-------AGTGCATCG-----TGCCAAAAGGTG---------------------------------------------------------------------AAAAA-AGA------------------------------------------------------------------------GAGTGGCGCTG---------TC-GTGCATAACCTCAAACGTG---------------------------------------------------GCGTACACTGTACAGTTTGTAAACAGAGAAATCCA-ATGGCAG-----------AAATAGGTTAATGTG-----------TG-----GAGCGC------------------------------------------------------AGAGAAACTTGCACACTCACACTC------GCATA--CGAA----------------------------------TATCTCGGAGA---TTTACG------------------CTCCGCTCCA------A-A---SizeHit CountTotal NormTotal
No Reads
droAna3
ACAAGATAGTCCTCTGTGCCGCCTCGCCATTCCTACTGGACTTGCTGAAGGTGAGTA-----------------------AGAAT-------GGTGCACTGAGAAAAACTAAAAATATAT------TTCTGG------------GATAAGTAAAATAAGTTTC----TGAATAC-A------TC--ACAGAGGAGAAACTGCATAGTCGTGCTTGCATTGTGGCAGAAATATCATTAATTTTCTCTCAGTGTTTAGTGACGTT--TTGGAGCTC--TTGT--------CC-GTACCTAACCTCAAACGTG---------------------------------------------------GCG-------TACAGTTTGTAAACAGAGAAATCCA-ATCGCAG-----------AAATAGGTTAATG-------------TG-----GAGCGC------------------------------------------------------AGAGAAACTTGCA--------------------TA--CACATGTCCAA---------------------------CATCTCGGAGA---TTGGCG------------------CTCCGCTCCA------A-A---SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................GTA-----------------------AGAAT-------GGTGCACTGAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
droBip1
ACAAGATTGTCCTCTGTGCCGCGTCGCCGTTCCTACTGGACTTGCTGAAGGTGAGTAATGATTCCATCTTATATAAGTTCCTCGGTTAGGAA----------------------------------------------CACT-A------------------C------------A------CC---------------TGTACTGTCG------------------AATACTATAAAATTTCTCTTAGTGTATGGTGACGTTTTTTGGAGCTC--TGCT--------CCAAAACCTAACCTCAAACGTG---------------------------------------------------GCG-------TACAGTTTGTAAACAGAGAAATCCA-ATCGCAG-----------AAATAGGTTAATG-------------TG-----GAGCGC------------------------------------------------------AGAGAAACTTGCA--------------------TA--CAT--GTCCAA---------------------------CATCTCGGAGA---TTGGCG------------------CTCCGCTCCA------A-A---SizeHit CountTotal NormTotal
No Reads
dp5
ACAAAATAGTGCTCTGTGCCGCCTCGCCGTTCCTCCTGGATTTGCTAAAGGTAAGCG-----------------------AGAGT-------AGAGTGTGGAGA-GAGCTAGAGAGAGAGAGAG----------------------------------------------------------------AGAG-AGA------------------------------------------------------------------------GAGTTG--T-GTGGAGTCGGGG-CGACATAACCACAAACGTGGCCAGTCTGAGATTTT--------------------GACTC----------GCG-------TACAGTTTGTAAACAGAGAAACCC--ATCGCAA-----------AAATAGGTTAATGTT-----------TG-----GAGCGC---------------------------------GGCTCCCACAAAAGCAT--TCAGAGAAACTTACT----CACACGCACACATGCACA----CACTTACA----------------------------GAT--GGCAGAGCATTCGCTCTTCCCTGCTCTGCTCTTCTCTGCTCCA------A-A---SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................G-AGA------------------------------------------------------------------------GAGTTG--T-GTGGAGTCGG...................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.CAAAATAGTGCTCTGTGCCGCCTCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
...........CTCTGTGCCGCCTCGCCGTTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.........................GCCGTTCCTCCTGGATTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.....................................................................................................................GAGAGAG----------------------------------------------------------------AGAG-AGA------------------------------------------------------------------------GAGTTG--...............................................................................................................................................................................................................................................................................................................................................................................20160.0610000010000
droPer2
ACAAAATAGTGCTCTGTGCCGCCTCGCCGTTCCTCCTGGATTTGCTAAAGGTAAGCG-----------------------AGAGT-------AGAGTGTGGAGA-GAGCTAGAGAGAGAGAGAG----------------------------------------------------------------AGAG-AGA------------------------------------------------------------------------GAGTTG--T-GTGGAGTCGGGG-CGACATAACCACAAACGTGGCCAGTCTGAGATTTT--------------------GACTC----------GCG-------TACAGTTTGTAAACAGAGAAACCC--ATCGCAA-----------AAATAGGTTAATGTT-----------TG-----GAGCGC---------------------------------GGCTCCCACAAAAGCAT--TCAGAGAAACTTACT----CACACGCACACATGCACA----CACTTACA----------------------------GAT--GGCAGAGCATTCGCTCTTCCCTGCTCTGCTCTTCTCTGCTCCA------A-A---SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................GTTCCTCCTGGATTTGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
........................CGCCGTTCCTCCTGGATTTGCTAAAGAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
............................................................................................................................................................................................................................................................................GAGTTG--T-GTGGAGTCGGGG-C...............................................................................................................................................................................................................................................................................................................................................................2011.001000001
droWil2
ATAAAATTGTCCTATGTGCCGCCTCACCGTTTTTATTGGATTTGCTTAAGGTGAGTG-----------------------TGTTC--------------------------AAATAA-T-------TTCTGTATAGT-TGCT-A------------------T----T------C---------T------------------------------------------------------------------------------------AGCTA--ATG---------TA-TAACCTAACCTCAAAAGTT--------AAGTTGCT--------------------TACTCGCGTAGGCAAGCG-------TACAGTTTGTAAACAGAGAA------------------------AAATAGGTTAGTGTTATTTTTGTTGCTG-----GAGCA------------------------------------------------------------AAC-TACA--------TGT----ATGCACATACATTTAAATG----------------------------AGAAACCCTCA---ATAA--------------------TTCCACTCTT------GTG---SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTG-----GAGCA------------------------------------------------------------AAC-TACA--------TGT----ATGC.......................................................................................................2211.00101000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTGTTATTTTTGTTGCTG-----...................................................................................................................................................................................................2211.00101000
..................................ATTGGATTTGCTTAAGGTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
....AATTGTCCTATGTGCCGCCTCACCGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
.................................................................................................................................................................................................................................................................................................................AAGTT--------AAGTTGCT--------------------TACTCGCG.................................................................................................................................................................................................................................................................................................2111.00101000
............................GTTTTTATTGGATTTGCTTAAGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.50100010
droVir3
ACAAAATCGTGCTCTGTGCGGCTTCTCCATTTCTATTGGACTTGCTAAAGGTGAGTG-----------------------CGCGG------------------------------------------------------------------------------------------------------------CGA------------------------------------------------------------------------GAGCTT--TTG---------TC-AAACATAACCTCAACAAC-------G-----------TTCTTCTGGCATGTGTTTTGTGC----------GCG-------TACAGTTTGTAAACAGAGAAATCAAAGTCGTCGTTCGACTTGCCAAATAGGTTAATATG-----------TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................AAACAGAGAAATCAAAGTCGT.................................................................................................................................................................................................................................................2112.002000000000020000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................TTCTGGCATGTGTTTTGT......................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000100000000000000000000000000000
......TCGTGCTCTGTGCGGCTTCTCCATTTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000001000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................CAGAGAAATCAAAGTCGTCGT..............................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................CTGGCATGTGTTTTGTGC----------GCG-------................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
.CAAAATCGTGCTCTGTGCGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
....................................................GAGTG-----------------------CGCGG------------------------------------------------------------------------------------------------------------CGA------------------------------------------------------------------------GAGCTT--...............................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.......CGTGCTCTGTGCGGCTTCTCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
ACAAAATCGTGCTCTGTGCGGCTTCTCCATTTCTGTTGGACCTGCTAAAGGTGAGTA-----------------------CGCGG------------------------------------------------------------------------------------------------------------CGA------------------------------------------------------------------------GAGCTT--T-T---------CT-AAACATAACCTCAACAGCGAC-GACG-----------TTTCGTTGGCATGTGTTTT-TGC----------GCG-------TACAGTTTGTAAACAGAGAAATCAAAATCGTCGTCCGACTTGCCAAATAGGTTATTATG-----------TGTTTGTGCGTGCGTGCGAGTGTGTTTGAATTTGTGAAACGGTTTTGACTCCCCAACA--CAATGTGAATGTAAGCTACATA----------C--ATGCATA--CATTAGTATT-TGAGTGCTCGTGTATATGTGTGAGTTAAGAAATGTGCA---TTCGCG------------------CTCTGCTCCTGGCTTAA-ACACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.CAAAATCGTGCTCTGTGCGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.................GCGGCTTCTCCATTTCTGTTGGACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
...........................................GCTAAAGGTGAGTA-----------------------CGCGG------------------------------------------------------------------------------------------------------------CG................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
droGri2
ACAAAATTGTGCTCTGTGCGGCATCGCCATTTCTGTTGGACCTGCTAAAGGTGAGTA--------------------------------------------------------------------------------------------------------------------------------------A-AGA------------------------------------------------------------------------GAGCTT--T-TTTTCATTTTTC-ACACATAACCTCAACCAGCAATAATTTTTTTTTTTTTTGCTGCTGGCATGTGT----TGT----------GTG-------TACAGTTTGTAAACAGAGAAATCAACATCGTTGTCCGACTTGCCAAATAGGTTAATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 12:11 AM